These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14813#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1086 fasta sequence [CGGCGGAATTCGCTGTTGGAGTGAGTATTCATCGAGGCAAAGCTCGAATTTTTGGTACTATCCGATTGGTGGCGAAGCAGC-GGCGGAGCGAGAGAAAATCGCTGTAGGAATCGGGGGAGAAGGAGGAGTAGATAGAGGGAGGTGGATTGAGCTGTGGGAGGTTAGGTTGGTGATTGGTAGAGGAGGAGGAGGAGGAGATGGAGAGGAAGGTGGTGGTGGTGTGCGCGGTGGTCGGCTTCCTCGGCGTCCTCTCGGCGGCGCTCGGCTTCGCGGCGGAGGGCACACGCGTCAAGGTTTCAGATGTGCAAACTTCTTCTCCAGGTCAATGCATATACCCAAGAAGCCCAGCCTTAGCCCTAGGGTTAATATCTGCGGTTGCTCTTATGGTCGCCCAGTCTATTATAAATACAGTGGCTGGTTGCATCTGTTGT-AAGAGGCATCCAGTTCCCTCAGACACTAACTGGAGCGTAGCTCT-GATCTCATTCATCGTGTCTTGGGCCACTTTCATAATCGCGTTCCTTCTCCTACTGACCGGAGCTGCACTTAACGATCAACGGGGTGAGGAGAACATGTACTTTGGCAGCTTCTGCTACGTTGTCAAGCCAGGGGTCTTTTCTGGAGGGGCAGTGCTCTCACTTGCCAGCGTGGCACTGGCAATAGTTTACTACGTTGCCCTATCATCGGCGAAAAGTCCACCAAATTGGGGTCCCCAGCAGAACCAAGGCAT-CGCCATGGGCCAACCTGTGATCCCTCCACAGAGCAGCGAACCGGTGTTTGTCCACGAGGACACCTACAATCGGCAGCAATTCCCATAAATCATGATCTGTGCAAGCTGTTTCGAGGGCCATTCTGATACATTATGTTTGGTTTGTATAGGCCTCCAGGTTAGAACAGTAGCAGTAACAATTGTTGTTAGGTAGAGTCATGTTTTTTGCTTTCTTCTTCCCCCTCTTTCTTGAGCGCTACTGTCGCACGTTCTGCTTCATCACAGCGGATATTCGATTTTACATGAACCGGGCAATGTTGAAGAAAGCTTGAGTTTCTTGCTATTTGCAAATTCTGAAGGTTTTACAAAAANAAAAAAAA] [+] EMBL AK061552 [CGGCGGAATTCGCTGTTGGAGTGAGTATTCATCGAGGCAAAGCTCGAATTTTTGGTACTATCCGATTGGTGGCGAAGCAGC GGCGGAGCGAGAGAAAATCGCTGTAGGAATCGGGGGAGAAGGAGGAGTAGATAGAGGGAGGTGGATTGAGCTGTGGGAGGTTAGGTTGGTGATTGGTAGAGGAGGAGGAGGAGGAGATGGAGAGGAAGGTGGTGGTGGTGTGCGCGGTGGTCGGCTTCCTCGGCGTCCTCTCGGCGGCGCTCGGCTTCGCGGCGGAGGGCACACGCGTCAAGGTTTCAGATGTGCAAACTTCTTCTCCAGGTCAATGCATATACCCAAGAAGCCCAGCCTTAGCCCTAGGGTTAATATCTGCGGTTGCTCTTATGGTCGCCCAGTCTATTATAAATACAGTGGCTGGTTGCATCTGTTGT AAGAGGCATCCAGTTCCCTCAGACACTAACTGGAGCGTAGCTCT GATCTCATTCATCGTGTCTTGGGCCACTTTCATAATCGCGTTCCTTCTCCTACTGACCGGAGCTGCACTTAACGATCAACGGGGTGAGGAGAACATGTACTTTGGCAGCTTCTGCTACGTTGTCAAGCCAGGGGTCTTTTCTGGAGGGGCAGTGCTCTCACTTGCCAGCGTGGCACTGGCAATAGTTTACTACGTTGCCCTATCATCGGCGAAAAGTCCACCAAATTGGGGTCCCCAGCAGAACCAAGGCAT CGCCATGGGCCAACCTGTGATCCCTCCACAGAGCAGCGAACCGGTGTTTGTCCACGAGGACACCTACAATCGGCAGCAATTCCCATAAATCATGATCTGTGCAAGCTGTTTCGAGGGCCATTCTGATACATTATGTTTGGTTTGTATAGGCCTCCAGGTTAGAACAGTAGCAGTAACAATTGTTGTTAGGTAGAGTCATGTTTTTTGCTTTCTTCTTCCCCCTCTTTCTTGAGCGCTACTGTCGCACGTTCTGCTTCATCACAGCGGATATTCGATTTTACATGAACCGGGCAATGTTGAAGAAAGCTTGA ] [+] EMBL AU082359 [ TGTTGGAGTGAGTATTCATCGAGGCAAAGCTCGAATTTTTGGTACTATCCGATTGGTGGCGA CAGCNGGCGGA CGAGAGAAAATCGCTGTAGGAATCGGGGGAGAAGGAGGAGTAGATAGAGGGAGGTGGATTGAGCTGTGGGAGGTTAGGTTGGTGATTGGTAGAGGAGGAGGAGGAGGAGATGGAGAGGAAGGTGGTGGTGGTNTGCGCGGTGGTCGGCTTCCTCGGCGTCCTCTCGGCGGCGCTCGGCTTCGCGGCGGAGGGCACACGCGTCAAGGTTTCAGATGTGCAAACTTCTTCTCCAGGTCAATGCATATACCCAAGAAGCCCAGCCTTAGCCCTAGGGTTAATATCTGCGGTTTCTCTTATGGTCGCCCAGTCTATTATAAATACAGTNGCTNGTTCCATCTGTTGTAAAGAAGCATCCAGTTCCCTCAGA ] [+] EMBL AK122142 [ GAGTATTCATCGAGGCAAAGCTCGAATTTTTGGTACTATCCGATTGGTGGCGAAGCAGC GGCGGAGCGAGAGAAAATCGCTGTAGGAATCGGGGGAGAAGGAGGAGTAGATAGAGGGAGGTGGATTGAGCTGTGGGAGGTTAGGTTGGTGATTGGTAGAGGAGGAGGAGGAGGAGATGGAGAGGAAGGTGGTGGTGGTGTGCGCGGTGGTCGGCTTCCTCGGCGTCCTCTCGGCGGCGCTCGGCTTCGCGGCGGAGGGCACACGCGTCAAGGTTTCAGATGTGCAAACTTCTTCTCCAGGTCAATGCATATACCCAAGAAGCCCAGCCTTAGCCCTAGGGTTAATATCTGCGGTTGCTCTTATGGTCGCCCAGTCTATTATAAATACAGTGGCTGGTTGCATCTGTTGT AAGAGGCATCCAGTTCCCTCAGACACTAACTGGAGCGTAGCTCT GATCTCATTCATCGTGTCTTGGGCCACTTTCATAATCGCGTTCCTTCTCCTACTGACCGGAGCTGCACTTAACGATCAACGGGGTGAGGAGAACATGTACTTTGGCAGCTTCTGCTACGTTGTCGAGCCAGGGGTCTTTTCTGGAGGGGCAGTGCTCTCACTTGCCAGCGTGGCACTGGCAATAGTTTACTACGTTGCCCTATCATCGGCGAAAAGTCCACCAAATTGGGGTCCCCAGCAGAACCAAGGCAT CGCCATGGGCCAACCTGTGATCCCTCCACAGAGCAGCGAACCGGTGTTTGTCCACGAGGACACCTACAATCGGCAGCAATTCCCATAAATCATGATCTGTGCAAGCTGTTTCGAGGGCCATTCTGATACATTATGTTTGGTTTGTATAGGCCTCCAGGTTAGAACAGTAGCAGTAACAATTGTTGTTAGGTAGAGTCATGTTTTTTGCTTTCTTCTTCCCCCTCTTTCTTGAGCGCTACTGTCGCACGTTCTGCTTCATCACAGCGGATATTCGATTTTACATGAACCGGGCAATGTTGAAGAAAGCTTGA ] [+] EMBL AK098848 [ AGCAGC GGCGGAGCGAGAGAAAATCGCTGTAGGAATCGGGGGAGAAGGAGGAGTAGATAGAGGGAGGTGGATTGAGCTGTGGGAGGTTAGGTTGGTGATTGGTAGAGGAGGAGGAGGAGGAGATGGAGAGGAAGGTGGTGGTGGTGTGCGCGGTGGTCGGCTTCCTCGGCGTCCTCTCGGCGGCGCTCGGCTTCGCGGCGGAGGGCACACGCGTCAAGGTTTCAGATGTGCAAACTTCTTCTCCAGGTCAATGCATATACCCAAGAAGCCCAGCCTTAGCCCTAGGGTTAATATCTGCGGTTGCTCTTATGGTCGCCCAGTCTATTATAAATACAGTGGCTGGTTGCATCTGTTGT AAGAGGCATCCAGTTCCCTCAGACACTAACTGGAGCGTAGCTCT GATCTCATTCATCGTGTCTTGGGCCACTTTCATAATCGCGTTCCTTCTCCTACTGACCGGAGCTGCACTTAACGATCAACGGGGTGAGGAGAGCATGTACTTTGGCAGCTTCTGCTACGTTGTCAAGCCAGGGGTCTTTTCTGGAGGGGCAGTGCTCTCACTTGCCAGCGTGGCACTGGCAATAGTTTACTACGTTGCCCTATCATCGGCGAAAAGTCCACCAAATTGGGGTCCCCAGCAGAACCAAGGCAT CGCCATGGGCCAACCTGTGATCCCTCCACAGAGCAGCGAACCGGTGTTTGTCCACGAGGACACCTACAATCGGCAGCAATTCCCATAAATCATGATCTGTGCAAGCTGTTTCGAGGGCCATTCTGATACATTATGTTTGGTTTGTATAGGCCTCCAGGTTAGAACAGTAGCAGTAACAATTGTTGTTAGGTAGAGTCATGTTTTTTGCTTTCTTCTTCCCCCTCTTTCTTGAGCGCTACTGTCGCACGTTCTGCTTCATCACAGCGGATATTCGATTTTACATGAACCG ] [+] EMBL OSS3638A [ AGGAGGAGTAGATAGAGGGAGGTGGATTGANCTGTGGGAGGTTAGGTTGGTGATTGGTAGAGGAGGAGGAGGAGGAGATGGAGAGGAAGGTGGTGGTGGTGTGCGCGGTGGTCGGCTTCCTCGGCGTCCTCTCGGCGGCGCTCGGCTTCGCGGCGGAGGGCACACGCGTCAAGGTTTCAAATGTGCAAACTTCTTCTCCAGGTCAATGCATATACCCAAGAAGCCCAGCCTTAGCCCTAGGGTTAATATCTGCGGTTGCTCTTATGGTCGCCCAGTCTATTATAAATACAGTGGCTGGTTGCATCTGTTGT AAGAGGCATCCAGTTCCCTCAGACACTAACTGGAGCGTAG TCTNNATCTCATTC ] [+] EMBL OSS2530A [ GGAGGAGTAGATAGAGGGAGGTGGATTGAGCTGTGGGAGGTTAGGTTGGTGATTGGTAGAGGAGGAGGAGGAGGAGATGGAGAGGAAGGTGGTGGTGGTGTGCGCGGTGGTCGGCTTCCTCGGCGTCCTCTCGGCGGCGCTCGGCTTCGCGGCGGAGGGCACACGCGTCAAGGTTTCAGATGTGCAAACTTCTTCTCCAGGTCAATGCATATACCCAAGAAGCCCAGCCTTAGCCCTAGGGTTAATATCTGCGGTTGCTCTTATGGTCGCCCAGTCTATTATAAATACAGTGGCTGGTTGCATCTGTTGT AAGAGGCATCCAGTTCCCTCAGACACTAA ] [+] EMBL OSS2533A [ GGAGGAGTAGATAGAGGGAGGTGGATTGAGCTGTGGGAGGTTAGGTTGGTGATTGGTAGAGGAGGAGGAGGAGGAGATGGAGAGGAAGGTGGTGGTGGTGTGCGCGGTGGTCGGCTTCCTCGGCGTCCTCTCGGCGGCGCTCGGCTTCGCGGCGGAGGGCACACGCGTCAAGGTTTCAGATGTGCAAACTTCTTCTCCAGGTCAATGCATATACCCAAGAAGCCCAGCCTTAGCCCTAGGGTTAATATCTGCGGTTGCTCTTATGGTCGCCCAGTCTATTATAAATACAGTGGCTGGTTGCATCTGTTGT AAGAGGCATCCAGTTCCCTCAGACACTAA ] [+] EMBL AU082454 [ CGTGGCACTGGCAATAGTTTACTACGTTNCCCTATCATCGGCGAAAAGTCCACCAAATTGGGGTCCCCANCAGAACCAAGGCATCCGCCATGGGCCAACCTGTGATCCCTCCACAGAGCAGCGAACCGGTGTTTGTCCACGAGGACACCTACAATCGGCAGCAATTCCCATAAATCATGATCTGTGCAAGCTGTTTCGAGGGCCATTCTGATACATTATGTTTGGTTTGTATAGGCCTCCAGGTTAGAACAGTAGCAGTAACAATTGTTGTTAGGTAGAGTCATGTTTTTTGCTTTCTTCTTCCCCCTCTTTCTTGAGCGCTACTGTCGCACGTTCTGCTTCATCACAGCGGATATTCGATTTTACATGAACCGGGCAATGTTGAAGAAAGCTTGAGTTTCTTGCTATTTGCAAATTCTGAAGGTTTTACAAAAANAA ] [+] EMBL AU222970 [ ATAGTTTANTACGTTGCCCTATCATCGGCGAAAAGTCCNCCAAATTGGGGTCCCCAGCAGAACCAAGGCAT CGCCATGGGCCAACCTGTGATCCCTCCACAGAGCAGCGAACCGGTGTTTGTCCNCGAGGACACCTACAATCGGCAGCAATTCCCATAAATCATGATCTGTGCAAGCTGTTTCGAGGGCCATTNTGATACATTATGTTTGGTTTGTATAGGCCTCCAGGTTAGAACAGTAGCAGTAACAATTGTTGTTAGGTAGAGTCATGTTTTTTGCTTTCTTCTTCCCCCTCTTTCTTGAGCGCTACTGTCGCACGTTNTGCTTCATCACAGCGGATATTCGATTTTACATGAACCGGGCAATGTTGAAGAAAGCTTGAGTTTCTTGCTATTTGCAAATTNTGAAGGTTTTTCAAAAAAAAAAAAAA] consensusID : consensus_14813#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 864 fasta sequence [TTATTCTTGCAAGGGAATTCATATGAGTGGTTCACATGATGGCTAAATAGAATAACTTTTGCATAGATTTCAAGTGCAATTAGTAATGTGAAGTGCAATTCTACCTTTTTCTTGGAACATCTTTGGGGGGTTAGCTGTGCTTTATTCTAAGGTAGGGTTCAGATCAGAATGTTGTGGCTTATTTTGCGGAAGTCCTGATTCCTGAATGCTATATTTTAGCAAAATACTCTGCTATTTGTTATTTGCCATAACGTCGTCCTGGATATTGTTACATTCTGCAGGGCCACTTTCATAATCGCGTTCCTTCTCCTACTGACCGGAGCTGCACTTAACGATCAACGGGGTGAGGAGAACATGTACTTTGGCAGCTTCTGCTACGTTGTCAAGCCAGGGGTCTTTTCTGGAGGGGCAGTGCTCTCACTTGCCAGCGTGGCACTGGCAATAGTTTACTACGTTGCCCTATCATCGGCGAAAAGTCCACCAAATTGGGGTCCCCAGCAGAA-CCAAGGCATCGCCATGGGCCAACCTGTGATCCCTCCACAGAGCAGCGAACCGGTGTTTGTCCACGAGGACACCTACAATCGGCAGCAATTCCCATAAATCATGATCTGTGCAAGCTGTTTCGAGGGCCATTTTGATACATTATGTTTGGTTTGTATAGGCCTCCAGGTTAGAACAGTAGCAGTAACAATTGTTGTTAGGTAGAGTCATGTTTTTTGCTTTCTTCTTCCCCCTCTTTCTTGAGCGCTACTGTCGCACGTTTTGCTTCATCCCAGCAGATATTCGATTTTACATGAACTGGGCAATGTTGAAGAAAGCTTGAGTTTCTTGCTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CB671340 [TTATTCTTGCAAGGGAATTCATATGAGTGGTTCACATGATGGCTAAATAGAATAACTTTTGCATAGATTTCAAGTGCAATTAGTAATGTGAAGTGCAATTCTACCTTTTTCTTGGAACATCTTTGGGGGGTTAGCTGTGCTTTATTCTAAGGTAGGGTTCAGATCAGAATGTTGTGGCTTATTTTGCGGAAGTCCTGATTCCTGAATGCTATATTTTAGCAAAATACTCTGCTATTTGTTATTTGCCATAACGTCGTCCTGGATATTGTTACATTCTGCAGGGCCACTTTCATAATCGCGTTCCTTCTCCTACTGACCGGAGCTGCACTTAACGATCAACGGGGTGAGGAGAACATGTACTTTGGCAGCTTCTGCTACGTTGTCAAGCCAGGGGTCTTTTCTGGAGGGGCAGTGCTCTCACTTGCCAGCGTGGCACTGGCAATAGTTTACTACGTTGCCCTATCATCGGCGAAAAGTCCACCAAATTGGGGTCCCCAGCAGAA CCAAGGCATCGCCATGGGCCAACCTGTGATCCCTCCACAGAGCAGCGAACCGGTGTTTGTCCACGAGGACACCTACAATCGGCAGCAATTCCCATAAATCATGATCTGTGCAAGCTGT ] [-] EMBL CA759942 [ GAAGTCCTGATTCCTGAATGCTATATCTTAGCAAAATACTTTGCTATTTGTTATTTGCCATAACGTCGTCCTGGATATTGTTACATTCTGCAGGGCCACTTTNATAATCGCGTTCCTTCTCCTACTGACCGGAGCTGCACTTAATGATCAACGGGGTGAGGAGAACATGTACTTTGGCAGCTTTTGCTACGTTGTCAAGCCAGGGGTCTTTTCTGGAGGGGCAGTGCTCTCACTTGCCAGCGTGGCACTGGCAATAGTTTACTATGTTGCCCTATTATCGGCGAAAAGTCCCCCAAATTGGGGTCCCCAGCAGAA CCAAGGGATCGCCATGGGCCAACCTGTGATCCCTCCACAGAGCAGCGAACCGGTGTTTGTCCCCGAGGACACCTACAATCGGCAGCAATTCCCATAAATCATGATCTGTGCAAGCTGTTTCGAGGGCCATTTTGATACATTATGTTTGGTTTGTATAGGCCTCCAGGTTAGAACAGTAGCAGTAACAATTGTTGTTAGGTAGAGTCATGTTTTTTGCTTTCTTCTTCCCCCTCTTTCTTGAGCGCTACTGTCGCACGTTTTGCTTCATCCCAGCAGATATTCGATTTTACATGAACTGGGCAATGTTGAAGAAAGCTTGAGTTTCTTGCTGTTAAAAAAAAAAAAAAAAAA ] [+] EMBL C97242 [ CAATAGTTT NTAC TTGCCTTATCACCGGCG AAAGTCCACCAAAATTGGGTCCCCAGCAGAACCCAAGGCATCGCCATGGGCCAACCTGTGATCCCTCCACAGAGCAGCGAACCGGTGTTTGTCCACGAGGACACCTACAATCGGCAGCAATTCCCATAAATCATGATCTGTGCAAGCTGTTTCGAGGGCCATTCTGATACATTATGTTTGGTTTGTATAGGCCTCCAGGTTAGAACAGTAGCAGTAACAATTGTTGTTAGGTAGAGTCATGTTTTTTGCTTTCTTCTTCCCCCTCTTTCTTGAGCGCTACTGTCGCACGTTCTGCTTCATCACAGCGGATATTCGATTTTACATGAACCGGGCAATGTTGAAGAAAGCTTGAGTTTCTTGCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_14813#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 800 fasta sequence [TGGTTCACATGATGGCTAAATAGAATAACTTTTGCATAGATTTCAAGTGCAATTAGTAATGTGAAGTGCAATTCTACCTTTTTCTTGGAACATCTTTGGGGGGTTAGCTGTGCTTTATTCTAAGGTAGGGTTCAGATCAGAATGTTGTGGCTTATTTTGCGGAAGTCCTGATTCCTGAATGCTATATTTTAGCAAAATACTCTGCTATTTGTTATTTGCCATAACGTCGTCCTGGATATTGTTACATTCTGCAGGGCCACTTTCATAATCGCGTTCCTTCTCCTACTGACCGGAGCTGCACTTAACGATCAACGGGGTGAGGAGAACATGTACTTTGGCAGCTTCTGCTACGTTGTCAAGCCAGGGGTCTTTTCTGGAGGGGCAGTGCTCTCACTTGCCAGCGTGGCACTGGCAATAGTTTACTACGTTGCCCTATCATCGGCGAAAAGTCCACCAAATTGGGGTCCCCAGCAGAACCAAGGCATCGCCATGGGCCAACCTGTGATCCCTCCACAGAGCAGCGAACCGGTGTTTGTCCACGAGGACACCTACAATCGGCAGCAATTCCCATAAATCATGATCTGTGCAAGCTGTTTCGAGGGCCATTCTGATACATTATGTTTGGTTTGTATAGGCCTCCAGGTTAGAACAGTAGCAGTAACAATTGTTGTTAGGTAGAGTCATGTTTTTTGCTTTCTTCTTCCCCCTCTTTCTTGAGCGCTACTGTCGCACGTTCTGCTTCATCACAGCGGATATTCGATTTTACATGAACCGGGCAATGTTGAAGAAAAAAAAAAGGA] [-] EMBL CB671341 [TGGTTCACATGATGGCTAAATAGAATAACTTTTGCATAGATTTCAAGTGCAATTAGTAATGTGAAGTGCAATTCTACCTTTTTCTTGGAACATCTTTGGGGGGTTAGCTGTGCTTTATTCTAAGGTAGGGTTCAGATCAGAATGTTGTGGCTTATTTTGCGGAAGTCCTGATTCCTGAATGCTATATTTTAGCAAAATACTCTGCTATTTGTTATTTGCCATAACGTCGTCCTGGATATTGTTACATTCTGCAGGGCCACTTTCATAATCGCGTTCCTTCTCCTACTGACCGGAGCTGCACTTAACGATCAACGGGGTGAGGAGAACATGTACTTTGGCAGCTTCTGCTACGTTGTCAAGCCAGGGGTCTTTTCTGGAGGGGCAGTGCTCTCACTTGCCAGCGTGGCACTGGCAATAGTTTACTACGTTGCCCTATCATCGGCGAAAAGTCCACCAAATTGGGGTCCCCAGCAGAACCAAGGCATCGCCATGGGCCAACCTGTGATCCCTCCACAGAGCAGCGAACCGGTGTTTGTCCACGAGGACACCTACAATCGGCAGCAATTCCCATAAATCATGATCTGTGCAAGCTGTTTCGAGGGCCATTCTGATACATTATGTTTGGTTTGTATAGGCCTCCAGGTTAGAACAGTAGCAGTAACAATTGTTGTTAGGTAGAGTCATGTTTTTTGCTTTCTTCTTCCCCCTCTTTCTTGAGCGCTACTGTCGCACGTTCTGCTTCATCACAGCGGATATTCGATTTTACATGAACCGGGCAATGTTGAAGAAAAAAAAAAGGA] consensusID : consensus_14813#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 586 fasta sequence [GCTCCCGGAAATTTCCCCCGGTTTCGACCCCACGCTGTCCGACTTTAACGATCAACCGGGTTGAGGGAGAACACTGTACTTTGCAGCTTCTGCTACGTTGTCAAGCCCAGGGTTCTTTTCTGGAGGGCCAGTGCTCTCACTTGCCAGCGTGCACTGCAATAGTTTACTACGTTGCCCTATCATCGGCGAAAAGTCCACCCAATTGGGGTCCCCAGCAGAACCAAGGCATCGCCATGGGCCAACCTGTGATCCCTCCACAGAGCAGCGAACCGGTGTTTGTCCACGAGGACACCTACATCGGCAGCAATTCCCATAAATCATGATCTGTGCAAGCTGTTTCGAGGCCATTCTGATACATTATGTTTGGTTTGTATAGGCCTCCAGGTTAGAACAGTACAGTAACATTGTTGCTAGGTAGAGTCATGTTTTTTTGCTTTCTTCTTCCCCCTCTTTCTTGAGCGCTACTGTCGCACGTTCTGCTTCATCACAGCGGATATTCGATTTTACATGAACTGGCATGTTGAAGAAAGCTTGAGTTTCTTGCTGTTTCAACCTCCTGAAGGTTTTACATGATAATTGGATCAAA] [+] EMBL BI798155 [GCTCCCGGAAATTTCCCCCGGTTTCGACCCCACGCTGTCCGACTTTAACGATCAACCGGGTTGAGGGAGAACACTGTACTTTGCAGCTTCTGCTACGTTGTCAAGCCCAGGGTTCTTTTCTGGAGGGCCAGTGCTCTCACTTGCCAGCGTGCACTGCAATAGTTTACTACGTTGCCCTATCATCGGCGAAAAGTCCACCCAATTGGGGTCCCCAGCAGAACCAAGGCATCGCCATGGGCCAACCTGTGATCCCTCCACAGAGCAGCGAACCGGTGTTTGTCCACGAGGACACCTACATCGGCAGCAATTCCCATAAATCATGATCTGTGCAAGCTGTTTCGAGGCCATTCTGATACATTATGTTTGGTTTGTATAGGCCTCCAGGTTAGAACAGTACAGTAACATTGTTGCTAGGTAGAGTCATGTTTTTTTGCTTTCTTCTTCCCCCTCTTTCTTGAGCGCTACTGTCGCACGTTCTGCTTCATCACAGCGGATATTCGATTTTACATGAACTGGCATGTTGAAGAAAGCTTGAGTTTCTTGCTGTTTCAACCTCCTGAAGGTTTTACATGATAATTGGATCAAA] consensusID : consensus_14813#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 437 fasta sequence [AGTGCTCTCACTTGCCAGCGTGGCACTGGCAATAGTTTACTACGTTGCCCTATCATCGGCGAAAAGTCCACCAAATTGGGGTCCCCAGCAGAACCAAGGCATCGCCATGGGCCAACCTGTGATCCCTCCACAGAGCAGCGAACCGGTGTTTGTCCACGAGGACACCTACAATCGGCAGCAATTCCCATAAATCATGATCTGTGCAAGCTGTTTCG-AGGGCCATTCTGATACATTATGTTTGGTTTGTATAGGCCT-CCAGGTTAGAACAGTAGCAGTAACAATTGTTGTTAGGTAGAGTCATGTTTTTTTTTTTTTTTTTCCCCCTCTTTCTTGAGCGCTACTGTCGCACGTTCTGCTTCATCACAGCGGATATTCGATTTTACATGAACCGGGCAATGTTGAAGAAAGCTTGAGTTTCTTGCGTTTGGGCCGCAAGC] [-] EMBL BI305511 [AGTGCTCTCACTTGCCAGCGTGGCACTGGCAATAGTTTACTACGTTGCCCTATCATCGGCGAAAAGTCCACCAAATTGGGGTCCCCAGCAGAACCAAGGCATCGCCATGGGCCAACCTGTGATCCCTCCACAGAGCAGCGAACCGGTGTTTGTCCACGAGGACACCTACAATCGGCAGCAATTCCCATAAATCATGATCTGTGCAAGCTGTTTCG AGGGCCATTTTGATACATTATGTTTGGTTTGTATAGGCCT CCAGGTTAGAACAGTAGCAGTAACAATTGTTGTTAGGTAGAGTCATGTTTTTTTTTTTTTTTTTCCCCCTCTTTCTTGAGCGCTACTGTCGCACGTTCTGCTTCATCACAGCGGATATTCGATTTTACATGAACCGGGCAATGTT AAGAAAGCTT AGTTTCTTGCGTTTGGGCC ] [-] EMBL BU673373 [ ACTTGCCAGCGTGGCACTGGCAATAGTTTACTACGTTGCCCTATCATCGGCGAAAAGTCCACCAAATTGGGGTCCCCAGCAGAACCAAGGCATCGCCATGGGCCAACCTGTGATCCCTCCACAGAGCAGCGAACCGGTGTTTGTCCACGAGGACACCTACAATCGGCAGCAATTCCCATAAATCATGATCTGTGCAAGCTGTTTCG AGGGCCATTCTGATACATTATGTTTGGTTTGTATAGGCCT CCAGGTTAGAACAGTAGCAGTAACAATTGTTGTTAGGTAGAGTCATGTTTTTTTTTTTTTTTTTCCCCCTCTTTCTTGAGCGCTACTGTCGCACGTTCTGCTTCATCACAGCGGATATTCGATTTTACATGAACCGGGCAATGTTGAAGAAAGCTTGAGTTTCTTGCTGTTGAGCCGCAAGC] [-] EMBL CB967447 [ CCAGCGTGGCACTGGCAATAGTTTACTACGTTGCCCTATCATCGGCGAAAAGTCCACCGAATTGGGGTCCCCAGCAGAACCAAGGCATCGCCATGGGCCAACCTGTGATCCCTCCACAGAGCAGCGAACCGGTGTTTGTCCACGAGGACACCTACAATCGGCAGCAATTCCCATAAATCATGATCTGTGCAAGCTGTTTCGNAGGGCCATTCTGATACATTATGTTTGGTTTGTATAGGCCTGCCAGGTTAGAACAGTAGCAGTAACAATTGTTGTTAGGTAGAGTCATG TTTTTTTTTTTTTTTTCCCCCTCTTTCTTGAGCGCTACTGTCGCACGTTCTGCTTCATCACAGCGGATATTCGATTTTACATGAACCGGGCAATGTTGAAGAAAGCTTGAGTTTCTTG ] consensusID : consensus_14813#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 241 fasta sequence [TACAATTNAATTGGTTTGGGTTTGGTAATTAAGGGCCTCCAAGGGTTAGAACAGTAGCAGTAACAATTGTTGTTAGGTAGAGTCATGTTTTTTGCTTTCTTCTTCCCCCTCTTTCTTGAGCGCTACTGTCGCACGTTCTGCTTCATCACAGCGGATATTCGATTTTACATGAACCGGGCAATGTTGAAGAAAGCTTGAGTTTCTTGCTATTTGCAAATTCTGAAGGTTTTACAAAAAAAAA] [+] EMBL AU082453 [TACAATTNAATTGGTTTGGGTTTGGTAATTAAGGGCCTCCAAGGGTTAGAACAGTAGCAGTAACAATTGTTGTTAGGTAGAGTCATGTTTTTTGCTTTCTTCTTCCCCCTCTTTCTTGAGCGCTACTGTCGCACGTTCTGCTTCATCACAGCGGATATTCGATTTTACATGAACCGGGCAATGTTGAAGAAAGCTTGAGTTTCTTGCTATTTGCAAATTCTGAAGGTTTTACAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14813#1 ------------------------------------------------------------ consensus_14813#2 ------------------------------------------------------------ consensus_14813#4 ------------------------------------------------------------ consensus_14813#3 ------------------------------------------------------------ consensus_14813#0 CGGCGGAATTCGCTGTTGGAGTGAGTATTCATCGAGGCAAAGCTCGAATTTTTGGTACTA 60 consensus_14813#5 ------------------------------------------------------------ consensus_14813#1 ------------------------------------------------------------ consensus_14813#2 ------------------------------------------------------------ consensus_14813#4 ------------------------------------------------------------ consensus_14813#3 ------------------------------------------------------------ consensus_14813#0 TCCGATTGGTGGCGAAGCAGCGGCGGAGCGAGAGAAAATCGCTGTAGGAATCGGGGGAGA 120 consensus_14813#5 ------------------------------------------------------------ consensus_14813#1 ------------------------------------------------------------ consensus_14813#2 ------------------------------------------------------------ consensus_14813#4 ------------------------------------------------------------ consensus_14813#3 ------------------------------------------------------------ consensus_14813#0 AGGAGGAGTAGATAGAGGGAGGTGGATTGAGCTGTGGGAGGTTAGGTTGGTGATTGGTAG 180 consensus_14813#5 ------------------------------------------------------------ consensus_14813#1 ------------------------------TTATTCTTGCAAGGGAATTCATATGAGTGG 30 consensus_14813#2 ---------------------------------------------------------TGG 3 consensus_14813#4 ------------------------------------------------------------ consensus_14813#3 ------------------------------------------------------------ consensus_14813#0 AGGAGGAGGAGGAGGAGATGGAGAGGAAGGTGGTGGTGGTGTGCGCGGTGGTCGGCTTCC 240 consensus_14813#5 ------------------------------------------------------------ consensus_14813#1 TTCACATGATGGCTAAATAGAATAACTTTTGCATAGATTTCAAGTGCAATTAGTAATGTG 90 consensus_14813#2 TTCACATGATGGCTAAATAGAATAACTTTTGCATAGATTTCAAGTGCAATTAGTAATGTG 63 consensus_14813#4 ------------------------------------------------------------ consensus_14813#3 ------------------------------------------------------------ consensus_14813#0 TCGGCGTCCTCTCGGCGGCGCTCGGCTTCGCGGCGGAGGGCACACGCGTCAAGGTTTCAG 300 consensus_14813#5 ------------------------------------------------------------ consensus_14813#1 AAGTGCAATTCTACCTTTTTCTTGGAACATCTTTGGGGGGTTAGCTGTGCTTTATTCTAA 150 consensus_14813#2 AAGTGCAATTCTACCTTTTTCTTGGAACATCTTTGGGGGGTTAGCTGTGCTTTATTCTAA 123 consensus_14813#4 ------------------------------------------------------------ consensus_14813#3 ------------------------------------------------------------ consensus_14813#0 ATGTGCAAACTTCTTCTCCAGGTCAATGCATATACCCAAGAAGCCCAGCCTTAGCCCTAG 360 consensus_14813#5 ------------------------------------------------------------ consensus_14813#1 GGTAGGGTTCAGATCAGAATGTTGTGG---CTTATTTTGCGGAAGTCCTGATTCCTGAAT 207 consensus_14813#2 GGTAGGGTTCAGATCAGAATGTTGTGG---CTTATTTTGCGGAAGTCCTGATTCCTGAAT 180 consensus_14813#4 ------------------------------------------------------------ consensus_14813#3 ------------------------------------------------------------ consensus_14813#0 GGTTAATATCTGCGGTTGCTCTTATGGTCGCCCAGTCTATTATAAATACAGTGGCTGGTT 420 consensus_14813#5 ------------------------------------------------------------ consensus_14813#1 GCTATATTTTAGCAAAATACTCTGCTATTT--GTTATTTGCCATAACGTCGTCCTGGATA 265 consensus_14813#2 GCTATATTTTAGCAAAATACTCTGCTATTT--GTTATTTGCCATAACGTCGTCCTGGATA 238 consensus_14813#4 ------------------------------------------------------------ consensus_14813#3 ------------------------------------------------------------ consensus_14813#0 GCATCTGTTGTAAGAGGCATCCAGTTCCCTCAGACACTAACTGGAGCGTAGCTCTGATCT 480 consensus_14813#5 ------------------------------------------------------------ consensus_14813#1 TTGTTACATTCTGCAGGGCCACTTTCATAATCGCGTTCCTTCTCCTACTGACCGGAGCTG 325 consensus_14813#2 TTGTTACATTCTGCAGGGCCACTTTCATAATCGCGTTCCTTCTCCTACTGACCGGAGCTG 298 consensus_14813#4 ------------------------------------------------------------ consensus_14813#3 --------------------GCTCCCGGAAATTTCCCCCGGTTTCGACCCCACGCTGTCC 40 consensus_14813#0 CATTCATCGTGTCTTGGGCCACTTTCATAATCGCGTTCCTTCTCCTACTGACCGGAGCTG 540 consensus_14813#5 ------------------------------------------------------------ consensus_14813#1 CACTT-AACGATCAACGGGGT--GAGGAGAACA-TGTACTTTGGCAGCTTCTGCTACGTT 381 consensus_14813#2 CACTT-AACGATCAACGGGGT--GAGGAGAACA-TGTACTTTGGCAGCTTCTGCTACGTT 354 consensus_14813#4 ------------------------------------------------------------ consensus_14813#3 GACTTTAACGATCAACCGGGTTGAGGGAGAACACTGTACTTTG-CAGCTTCTGCTACGTT 99 consensus_14813#0 CACTT-AACGATCAACGGGGT--GAGGAGAACA-TGTACTTTGGCAGCTTCTGCTACGTT 596 consensus_14813#5 ------------------------------------------------------------ consensus_14813#1 GTCAAGCC-AGGGGTCTTTTCTGGAGGGGCAGTGCTCTCACTTGCCAGCGTGGCACTGGC 440 consensus_14813#2 GTCAAGCC-AGGGGTCTTTTCTGGAGGGGCAGTGCTCTCACTTGCCAGCGTGGCACTGGC 413 consensus_14813#4 ------------------------------AGTGCTCTCACTTGCCAGCGTGGCACTGGC 30 consensus_14813#3 GTCAAGCCCAGGGTTCTTTTCTGGAGGGCCAGTGCTCTCACTTGCCAGCGTG-CACTG-C 157 consensus_14813#0 GTCAAGCC-AGGGGTCTTTTCTGGAGGGGCAGTGCTCTCACTTGCCAGCGTGGCACTGGC 655 consensus_14813#5 ------------------------------------------------------------ consensus_14813#1 AATAGTTTACTACGTTGCCCTATCATCGGCGAAAAGTCCACCAAATTGGGGTCCCCAGCA 500 consensus_14813#2 AATAGTTTACTACGTTGCCCTATCATCGGCGAAAAGTCCACCAAATTGGGGTCCCCAGCA 473 consensus_14813#4 AATAGTTTACTACGTTGCCCTATCATCGGCGAAAAGTCCACCAAATTGGGGTCCCCAGCA 90 consensus_14813#3 AATAGTTTACTACGTTGCCCTATCATCGGCGAAAAGTCCACCCAATTGGGGTCCCCAGCA 217 consensus_14813#0 AATAGTTTACTACGTTGCCCTATCATCGGCGAAAAGTCCACCAAATTGGGGTCCCCAGCA 715 consensus_14813#5 ------------------------------------------------------------ consensus_14813#1 GAACCAAGGCATCGCCATGGGCCAACCTGTGATCCCTCCACAGAGCAGCGAACCGGTGTT 560 consensus_14813#2 GAACCAAGGCATCGCCATGGGCCAACCTGTGATCCCTCCACAGAGCAGCGAACCGGTGTT 533 consensus_14813#4 GAACCAAGGCATCGCCATGGGCCAACCTGTGATCCCTCCACAGAGCAGCGAACCGGTGTT 150 consensus_14813#3 GAACCAAGGCATCGCCATGGGCCAACCTGTGATCCCTCCACAGAGCAGCGAACCGGTGTT 277 consensus_14813#0 GAACCAAGGCATCGCCATGGGCCAACCTGTGATCCCTCCACAGAGCAGCGAACCGGTGTT 775 consensus_14813#5 ------------------------------------------------------------ consensus_14813#1 TGTCCACGAGGACACCTACAATCGGCAGCAATTCCCATAAATCATGATCTGTGCAAGCTG 620 consensus_14813#2 TGTCCACGAGGACACCTACAATCGGCAGCAATTCCCATAAATCATGATCTGTGCAAGCTG 593 consensus_14813#4 TGTCCACGAGGACACCTACAATCGGCAGCAATTCCCATAAATCATGATCTGTGCAAGCTG 210 consensus_14813#3 TGTCCACGAGGACACCTACA-TCGGCAGCAATTCCCATAAATCATGATCTGTGCAAGCTG 336 consensus_14813#0 TGTCCACGAGGACACCTACAATCGGCAGCAATTCCCATAAATCATGATCTGTGCAAGCTG 835 consensus_14813#5 ------------------------------------------------------------ consensus_14813#1 TTTCGAGGGCCATTTTGATACATTATGTTTGGTTTGTATAGGCCTCCA--GGTTAGAACA 678 consensus_14813#2 TTTCGAGGGCCATTCTGATACATTATGTTTGGTTTGTATAGGCCTCCA--GGTTAGAACA 651 consensus_14813#4 TTTCGAGGGCCATTCTGATACATTATGTTTGGTTTGTATAGGCCTCCA--GGTTAGAACA 268 consensus_14813#3 TTTCGAGG-CCATTCTGATACATTATGTTTGGTTTGTATAGGCCTCCA--GGTTAGAACA 393 consensus_14813#0 TTTCGAGGGCCATTCTGATACATTATGTTTGGTTTGTATAGGCCTCCA--GGTTAGAACA 893 consensus_14813#5 -------TACAATTNAATTGGTTTGGGTTTGGTAATTAAGGGCCTCCAAGGGTTAGAACA 53 * *** * ** ******* ** ******** ********** consensus_14813#1 GTAGCAGTAACAATTGTTGTTAGGTAGAGTCATGTTTTTT-GCTTTCTTCTTCCCCCTCT 737 consensus_14813#2 GTAGCAGTAACAATTGTTGTTAGGTAGAGTCATGTTTTTT-GCTTTCTTCTTCCCCCTCT 710 consensus_14813#4 GTAGCAGTAACAATTGTTGTTAGGTAGAGTCATGTTTTTT-TTTTTTTTTTTCCCCCTCT 327 consensus_14813#3 GTA-CAGTAACA-TTGTTGCTAGGTAGAGTCATGTTTTTTTGCTTTCTTCTTCCCCCTCT 451 consensus_14813#0 GTAGCAGTAACAATTGTTGTTAGGTAGAGTCATGTTTTTT-GCTTTCTTCTTCCCCCTCT 952 consensus_14813#5 GTAGCAGTAACAATTGTTGTTAGGTAGAGTCATGTTTTTT-GCTTTCTTCTTCCCCCTCT 112 *** ******** ****** ******************** *** ** ********** consensus_14813#1 TTCTTGAGCGCTACTGTCGCACGTTTTGCTTCATCCCAGCAGATATTCGATTTTACATGA 797 consensus_14813#2 TTCTTGAGCGCTACTGTCGCACGTTCTGCTTCATCACAGCGGATATTCGATTTTACATGA 770 consensus_14813#4 TTCTTGAGCGCTACTGTCGCACGTTCTGCTTCATCACAGCGGATATTCGATTTTACATGA 387 consensus_14813#3 TTCTTGAGCGCTACTGTCGCACGTTCTGCTTCATCACAGCGGATATTCGATTTTACATGA 511 consensus_14813#0 TTCTTGAGCGCTACTGTCGCACGTTCTGCTTCATCACAGCGGATATTCGATTTTACATGA 1012 consensus_14813#5 TTCTTGAGCGCTACTGTCGCACGTTCTGCTTCATCACAGCGGATATTCGATTTTACATGA 172 ************************* ********* **** ******************* consensus_14813#1 ACTGGGCAATGTTGAAGAAAGCTTGAGTTTCTTGCTGTTAAAAAAAAAAAAAAAAAAAAA 857 consensus_14813#2 ACCGGGCAATGTTGAAGAAAAAAAAAAGGA------------------------------ 800 consensus_14813#4 ACCGGGCAATGTTGAAGAAAGCTTGAGTTTCTTGCGTTTGGGCCGCAAGC---------- 437 consensus_14813#3 ACTGGC--ATGTTGAAGAAAGCTTGAGTTTCTTGCTGTTTCAACCTCCTGAAGGTTTTAC 569 consensus_14813#0 ACCGGGCAATGTTGAAGAAAGCTTGAGTTTCTTGCTATTTGCAAATTCTGAAGGTTTTAC 1072 consensus_14813#5 ACCGGGCAATGTTGAAGAAAGCTTGAGTTTCTTGCTATTTGCAAATTCTGAAGGTTTTAC 232 ** ** ************ * consensus_14813#1 AAAAAAA---------- 864 consensus_14813#2 ----------------- consensus_14813#4 ----------------- consensus_14813#3 ATGATAATTGGATCAAA 586 consensus_14813#0 AAAAANAAAAAAAA--- 1086 consensus_14813#5 AAAAAAAAA-------- 241 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||