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Oryza sativa
cluster # 1482 cluster # 1482       Sequences # 2       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1482#0 length = 1742 sequences # 2  

consensusID : consensus_1482#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1742
fasta sequence
                              [TGCTAGTTCAGCATATATAAGCTCTGCAGTACATGGATCTAGTTCCTTTTATGATGGCGTACCTAAAGGAATACCATTATACTCCATGCAAGGGACAGCACTACATGCAAATTTGGGATCTGACCGGCATGGGAGTTTATCAAGTTCAGTTCCAGGCATACGTACTAGAGAAAATCATTTCAGTAACATGCACCGAGATGGGAGCATCAGTGACTCAATGAATAGCAGCTCGTCTATACCAGGTGATATCATTTCCAACTCTGATAATTCAGGATCGTTCACCAGACCAGCATTGTCTCTGGAGACAAGTT-GAAACCCCGTGGAGTTCTGGTGGCACATCTTCAGGAGCATCGCTTATCTGTCAATGATATTGCTGTATCAACCGACAATACCTTTTTCGTAACAGCTTCAGATGACTCAAGTGTCAAGATATGGGATACAAGAAAATTGGAAAAGGACATTGCCTTCAGATCTAGGTTAACATATAGCCTCGGTAGTAGCCGAGCTCTATGTACGACAATGCTTCATGGTACTCCCCAAGTTATTGTTGGTGCTAGTGATGGAACATTGCACTTGTTTTCTGTTGACTGCGCACGTGGTGTA-GGGAGTGTCATCGAAAGGTATTCTGGCATTGTTGATGTAAAAAGGAAAGATTTGAAAGAAGGTGCAATTCTCAGTGTTGTGAACTGTTCCACAGAGAGTTTTAGCCCAACCATTCTTTTCAGCACTGAACATTGTGGCATACATAAATGGGATACAAGGACCAATGCTGAGTCTTGGTCATTTAGATCTTCACCAGAGGAGGGCTATGTATCGGCACTTGTAGTGGGCCAGTGCGGGAATTGGTTCATCTCTGGGTCTTCAAGAGGCGTTCTTACGTTGTGGGATAATAGGTTTTTGCTTCCCGTTAACTCATGGAAATATTTGCCAGCAACCCCTATAGAGAAATTGTGCTTGTTTATACCACCACCGAATTCAATTTCTTCTTCCGGGAGACCTGTGGTTTTTGTTGCTGCAGGCTGCAATGAAGTTACCCTATGGGATGCTGAGAATGGAAGCCGTCACCAGATATTTAGAACAGCAAGTACTGAGAATGAAGCTGTTGTACCAAAGGCACCATCAATACATCCAAATACCAGAGATGAGACCCGGCCAGCGAATTATAATTACCGAATTGAAGAATTATGTGACCCGCCTCCACGCCTTCCAGGCATCCGCTCTTTGCTTCCTTTGCCAGGAGGGGACCTATTGACCGGAGGAACGGACTTGAAGATACGCTACTGGGATCAGGCCAGGCCTGAGCAAAGCTTCTGTATAGCCGGTCCCTCGGTGAAAGGAGCTGGAAACGACGAGACGTACGATATAAGATCCAGCTCTTGTGTACAAGTTGTGCAGGAAATATGCAGACAGCCCACGACGGCGTCGAGGCTAACCCACAAGACGCAGCTCGCCATGGCCGCCGCGGATTCCGCGGGGTGCCACCGAGACGCGATCCTCGCGCTGGCCTCCGTGAACTTGTCGAGCCACAGGCTCATCTCGGGAAGCAGAGACGGCGCCGTCAAGGCGTGGAAGTAGCCCGCCTCTCCTCTGCTCCGTCCATCTGGTAAGAGATGGCGTCCCCATGTACATATTAACCTCTGCTTAATTAGGCTTACACTGTTGCACATGACATTAGACACGGTACATGTAATCCTCACCGATGTACATAAGATGATGATGATTTCTACCAATACAAAGCAAGA]

[+] EMBL AK112107             [TGCTAGTTCAGCATATATAAGCTCTGCAGTACATGGATCTAGTTCCTTTTATGATGGCGTACCTAAAGGAATACCATTATACTCCATGCAAGGGACAGCACTACATGCAAATTTGGGATCTGACCGGCATGGGAGTTTATCAAGTTCAGTTCCAGGCATACGTACTAGAGAAAATCATTTCAGTAACATGCACCGAGATGGGAGCATCAGTGACTCAATGAATAGCAGCTCGTCTATACCAGGTGATATCATTTCCAACTCTGATAATTCAGGATCGTTCACCAGACCAGCATTGTCTCTGGAGACAAGTT GAAACCCCGTGGAGTTCTGGTGGCACATCTTCAGGAGCATCGCTTATCTGTCAATGATATTGCTGTATCAACCGACAATACCTTTTTCGTAACAGCTTCAGATGACTCAAGTGTCAAGATATGGGATACAAGAAAATTGGAAAAGGACATTGCCTTCAGATCTAGGTTAACATATAGCCTCGGTAGTAGCCGAGCTCTATGTACGACAATGCTTCATGGTACTCCCCAAGTTATTGTTGGTGCTAGTGATGGAACATTGCACTTGTTTTCTGTTGACTGCGCACGTGGTGTA GGGAGTGTCATCGAAAGGTATTCTGGCATTGTTGATGTAAAAAGGAAAGATTTGAAAGAAGGTGCAATTCTCAGTGTTGTGAACTGTTCCACAGAGAGTTTTAGCCCAACCATTCTTTTCAGCACTGAACATTGTGGCATACATAAATGGGATACAAGGACCAATGCTGAGTCTTGGTCATTTAGATCTTCACCAGAGGAGGGCTATGTATCGGCACTTGTAGTGGGCCAGTGCGGGAATTGGTTCATCTCTGGGTCTTCAAGAGGCGTTCTTACGTTGTGGGATAATAGGTTTTTGCTTCCCGTTAACTCATGGAAATATTTGCCAGCAACCCCTATAGAGAAATTGTGCTTGTTTATACCACCACCGAATTCAATTTCTTCTTCCGGGAGACCTGTGGTTTTTGTTGCTGCAGGCTGCAATGAAGTTACCCTATGGGATGCTGAGAATGGAAGCCGTCACCAGATATTTAGAACAGCAAGTACTGAGAATGAAGCTGTTGTACCAAAGGCACCATCAATACATCCAAATACCAGAGATGAGACCCGGCCAGCGAATTATAATTACCGAATTGAAGAATTATGTGACCCGCCTCCACGCCTTCCAGGCATCCGCTCTTTGCTTCCTTTGCCAGGAGGGGACCTATTGACCGGAGGAACGGACTTGAAGATACGCTACTGGGATCAGGCCAGGCCTGAGCAAAGCTTCTGTATAGCCGGTCCCTCGGTGAAAGGAGCTGGAAACGACGAGACGTACGATATAAGATCCAGCTCTTGTGTACAAGTTGTGCAGGAAATATGCAGACAGCCCACGACGGCGTCGAGGCTAACCCACAAGACGCAGCTCGCCATGGCCGCCGCGGATTCCGCGGGGTGCCACCGAGACGCGATCCTCGCGCTGGCCTCCGTGAACTTGTCGAGCCACAGGCTCATCTCGGGAAGCAGAGACGGCGCCGTCAAGGCGTGGAAGTAGCCCGCCTCTCCTCTGCTCCGTCCATCTGGTAAGAGATGGCGTCCCCATGTACATATTAACCTCTGCTTAATTAGGCTTACACTGTTGCACATGACATTAGACACGGTACATGTAATCCTCACCGATGTACATAAGATGATGATGATTTCTACCAATACAAAGCAAGA]
[+] EMBL CF305100             [                                                                                                                                                                                                                                 CAGCTCGTCTATACCAGGTGATATCATTTCCAACTCTGATAATTCAGGATCGTTCACCAGACCAGCATTGTCTCTGGAGACAAGTTGGAAACCCCGTGGAGTTCTGGTGGCACATCTTCAGGAGCATCGCTTATCTGTCAATGATATTGCTGTATCAACCGACAATACCTTTTTCGTAACAGCTTCAGATGACTCAAGTGTCAAGATATGGGATACAAGAAAATTGGAAAAGGACATTGCCTTCAGATCTAGGTTAACATATAGCCTCGGTAGTAGCCGAGCTCTATGTACGACAATGCTTCATGGTACTCCCCAAGTTATTGTTGGTGCTAGTGATGGAACATTGCACTTGTTTTCTGTTGACTGCGCACGTGGTGTANGGGAGTGTCATCGAAAGGTATTCTGGCATTGTTGATGTAAAAAGGAAAGATTTGAAAGAAGGTGCAATTCTCAGTGTTGTGAACTGTTCCACAGAGAGTTTTAGCCCAACCATTCTTTTCAGCACTGAACATTGTGGCATACATA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]


>consensus_1482#0 TGCTAGTTCAGCATATATAAGCTCTGCAGTACATGGATCTAGTTCCTTTTATGATGGCGT ACCTAAAGGAATACCATTATACTCCATGCAAGGGACAGCACTACATGCAAATTTGGGATC TGACCGGCATGGGAGTTTATCAAGTTCAGTTCCAGGCATACGTACTAGAGAAAATCATTT CAGTAACATGCACCGAGATGGGAGCATCAGTGACTCAATGAATAGCAGCTCGTCTATACC AGGTGATATCATTTCCAACTCTGATAATTCAGGATCGTTCACCAGACCAGCATTGTCTCT GGAGACAAGTTGAAACCCCGTGGAGTTCTGGTGGCACATCTTCAGGAGCATCGCTTATCT GTCAATGATATTGCTGTATCAACCGACAATACCTTTTTCGTAACAGCTTCAGATGACTCA AGTGTCAAGATATGGGATACAAGAAAATTGGAAAAGGACATTGCCTTCAGATCTAGGTTA ACATATAGCCTCGGTAGTAGCCGAGCTCTATGTACGACAATGCTTCATGGTACTCCCCAA GTTATTGTTGGTGCTAGTGATGGAACATTGCACTTGTTTTCTGTTGACTGCGCACGTGGT GTAGGGAGTGTCATCGAAAGGTATTCTGGCATTGTTGATGTAAAAAGGAAAGATTTGAAA GAAGGTGCAATTCTCAGTGTTGTGAACTGTTCCACAGAGAGTTTTAGCCCAACCATTCTT TTCAGCACTGAACATTGTGGCATACATAAATGGGATACAAGGACCAATGCTGAGTCTTGG TCATTTAGATCTTCACCAGAGGAGGGCTATGTATCGGCACTTGTAGTGGGCCAGTGCGGG AATTGGTTCATCTCTGGGTCTTCAAGAGGCGTTCTTACGTTGTGGGATAATAGGTTTTTG CTTCCCGTTAACTCATGGAAATATTTGCCAGCAACCCCTATAGAGAAATTGTGCTTGTTT ATACCACCACCGAATTCAATTTCTTCTTCCGGGAGACCTGTGGTTTTTGTTGCTGCAGGC TGCAATGAAGTTACCCTATGGGATGCTGAGAATGGAAGCCGTCACCAGATATTTAGAACA GCAAGTACTGAGAATGAAGCTGTTGTACCAAAGGCACCATCAATACATCCAAATACCAGA GATGAGACCCGGCCAGCGAATTATAATTACCGAATTGAAGAATTATGTGACCCGCCTCCA CGCCTTCCAGGCATCCGCTCTTTGCTTCCTTTGCCAGGAGGGGACCTATTGACCGGAGGA ACGGACTTGAAGATACGCTACTGGGATCAGGCCAGGCCTGAGCAAAGCTTCTGTATAGCC GGTCCCTCGGTGAAAGGAGCTGGAAACGACGAGACGTACGATATAAGATCCAGCTCTTGT GTACAAGTTGTGCAGGAAATATGCAGACAGCCCACGACGGCGTCGAGGCTAACCCACAAG ACGCAGCTCGCCATGGCCGCCGCGGATTCCGCGGGGTGCCACCGAGACGCGATCCTCGCG CTGGCCTCCGTGAACTTGTCGAGCCACAGGCTCATCTCGGGAAGCAGAGACGGCGCCGTC AAGGCGTGGAAGTAGCCCGCCTCTCCTCTGCTCCGTCCATCTGGTAAGAGATGGCGTCCC CATGTACATATTAACCTCTGCTTAATTAGGCTTACACTGTTGCACATGACATTAGACACG GTACATGTAATCCTCACCGATGTACATAAGATGATGATGATTTCTACCAATACAAAGCAA GA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)