These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1484#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 609 fasta sequence [AAATTCTTGATAAACTTCTCGGTCGTGATCACGATTCTCAATCGCATAGTTCAAGTACGAAAACTGAAACTCATACATCAGTAGATACTGGCAGTCGAGCAACAGATGAAAAACATCACAATGCCGATGGACAAACAACAGCAAGTCATACAGTTCAACACGAAGGCGTCAATATCAAATCATCAGTTTCGTCAGATCTCANATCAACTGTTTCAATTGAAAACCAAAATCGAATCAATGAACTCGTTACAAAATTAGGCTCAACTCATAAACAAATCGACGAGTATTCAAAAAAACAAACAGCTAANATCGATGAACAAATCCNACGTGATATCGATGCAGTCGTTACTCGTACACAAACACGACNAGCTGAACTTCTTCGAAAGGCTAATGAACATACNACACANATCGATNCTGAATATCGTGCACAATTACCAAAAATGGTTGAAGAAATTGATGCTGCTNAAGCAAAACGTATTGCTGANATTGAAATCGAATTANATAATCATNCAGCCGAAATCTTAGAAGCAGCTCGAAAGGGAATCGATGAATTAAATNACANAGCTTCGAATCTCANAATTACNGCTTTTATGGACGCACAAAGCAAAG] [+] EMBL CA754637 [AAATTCTTGATAAACTTCTCGGTCGTGATCACGATTCTCAATCGCATAGTTCAAGTACGAAAACTGAAACTCATACATCAGTAGATACTGGCAGTCGAGCAACAGATGAAAAACATCACAATGCCGATGGACAAACAACAGCAAGTCATACAGTTCAACACGAAGGCGTCAATATCAAATCATCAGTTTCGTCAGATCTCANATCAACTGTTTCAATTGAAAACCAAAATCGAATCAATGAACTCGTTACAAAATTAGGCTCAACTCATAAACAAATCGACGAGTATTCAAAAAAACAAACAGCTAANATCGATGAACAAATCCNACGTGATATCGATGCAGTCGTTACTCGTACACAAACACGACNAGCTGAACTTCTTCGAAAGGCTAATGAACATACNACACANATCGATNCTGAATATCGTGCACAATTACCAAAAATGGTTGAAGAAATTGATGCTGCTNAAGCAAAACGTATTGCTGANATTGAAATCGAATTANATAATCATNCAGCCGAAATCTTAGAAGCAGCTCGAAAGGGAATCGATGAATTAAATNACANAGCTTCGAATCTCANAATTACNGCTTTTATGGACGCACAAAGCAAAG] consensusID : consensus_1484#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 607 fasta sequence [GACAAGCTGAACTTCTTCGAAAGGCTAATGAACATACAACACAAATCGATACTGAATATCGTGCACAATTACAAAAAATGGTCGAAGAAATCGATGCTACTAAAGCAAAACGTATTGCTGCAATTGAAATCGAATTAAATAATCATCAAGCCGAAATCTTAGAAGCAGCTCGAAAGGAAATCGATGAATTAAATAACAAAGCTTCGAATCTCAAAATTACGGCTTTAATGGACGCACAAAGCAAAGCTGCTACAGATGCTGAAGCACTTACAGCTCAAGCAGCTAATCTAGGTTCAGCTGCAACTGTTCATCAAGCAAAAGGTACAACAACAATTAAGACCGAAGTTTCGGGAGCAGCAACGACCACCACAGCAGGTGCAGCAACAGCTAATTCGAGTTGTAGCAGTGGCAGTTGTTCGACAGCGACNAGCAAAGAAGCTTGCATGTCTAGTGGCGCTAAAACATGTTCTGATTCACACAAAACAGAATCAACCCAACACCAATCATCAACACGCANACATTAATTTAGTTTAGTTTTCGATGATNATAAAGAANACAACAACGTATTACTGATCGATCATGATGATTAACTTTCTTTTTTCATAGT] [+] EMBL CA753732 [GACAAGCTGAACTTCTTCGAAAGGCTAATGAACATACAACACAAATCGATACTGAATATCGTGCACAATTACAAAAAATGGTCGAAGAAATCGATGCTACTAAAGCAAAACGTATTGCTGCAATTGAAATCGAATTAAATAATCATCAAGCCGAAATCTTAGAAGCAGCTCGAAAGGAAATCGATGAATTAAATAACAAAGCTTCGAATCTCAAAATTACGGCTTTAATGGACGCACAAAGCAAAGCTGCTACAGATGCTGAAGCACTTACAGCTCAAGCAGCTAATCTAGGTTCAGCTGCAACTGTTCATCAAGCAAAAGGTACAACAACAATTAAGACCGAAGTTTCGGGAGCAGCAACGACCACCACAGCAGGTGCAGCAACAGCTAATTCGAGTTGTAGCAGTGGCAGTTGTTCGACAGCGACNAGCAAAGAAGCTTGCATGTCTAGTGGCGCTAAAACATGTTCTGATTCACACAAAACAGAATCAACCCAACACCAATCATCAACACGCANACATTAATTTAGTTTAGTTTTCGATGATNATAAAGAANACAACAACGTATTACTGATCGATCATGATGATTAACTTTCTTTTTTCATAGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1484#0 ---------AAATTCTTGATAAACTTCTCGGTCGTG-ATCACGATTCTCAATCGCATAGT 50 consensus_1484#1 GACAAGCTGAACTTCTTCGAAAGGCTAATGAACATACAACACAAATCGATACTGAATA-- 58 ** ***** ** * * * * * *** * ** * * *** consensus_1484#0 TCAAGTACGAAAACTGAAACTCAT-ACATCAGTAGATACTGGCAGTCGAGCAACAGATGA 109 consensus_1484#1 TCGTGCACAATTACAAAAAATGGTCGAAGAAATCGATGCTACTAAAGCAA-AACGTATTG 117 ** * ** * ** *** * * * * * *** ** * * *** ** consensus_1484#0 AAAACATCACAATGCCGATGGACAAACAACAGC---AAGTCATA----CAGTTCAACACG 162 consensus_1484#1 CTGCAATTGAAATCGAATTAAATAATCATCAAGCCGAAATCTTAGAAGCAGCTCGAAAGG 177 ** *** * * ** ** ** ** ** ** *** ** * * * consensus_1484#0 AAGGCGTCAATATCAAATCATCAGTTTCGTCAGATCTCANATCAACTGTTTCAATTGAAA 222 consensus_1484#1 AAATCGATGA-ATTAAATAACAAAGCT--TCGAATCTCAAAATTACGGCTTTAATGGACG 234 ** ** * ** **** * * * ** ****** * ** * ** *** ** consensus_1484#0 ACCAAAATCGAATCAATGAACTCGTTACAAAATTAGGCTCAACTCATAAACAAATCGACG 282 consensus_1484#1 CACAAAGCAAAGCTGCTACA---GATGCTGAAGCACTTACAGCTCA--AGCAGCTAATCT 289 **** * * * * * * ** * ** **** * ** * * consensus_1484#0 AGTATTCAAAAAAACAAACAGCTAANATCGATGAACAAATCCNACGTGATATCGATGCAG 342 consensus_1484#1 AG-GTTCAGCTGCA---ACTGTT--CATCAAGCAAAAGGTACAACAACA-ATTAAGACCG 342 ** **** * ** * * *** * ** * * * ** * ** * * * consensus_1484#0 TCGTTACTCGTACACAAAC-ACGACNAGCTGAACTTCTTCGAAAGGCTAATGAACATACN 401 consensus_1484#1 AAGTTTCGGGAGCAGCAACGACCACCACAGCAGGTGCAGCAACAGCTAATTCGAGTTGTA 402 *** * * ** *** ** ** * * * * * * ** * * * * consensus_1484#0 ACACANATCGATNCTGAATATCGTGCACAATTACCAAAAATGGTTGAAGAAATTGATGCT 461 consensus_1484#1 GCAGTGGCAGTTGTTCGACA------GCGACNAGCAAAGAAGCTTGCATGT-CTAGTGGC 455 ** * * * * * * * * **** * * *** * * ** consensus_1484#0 GCTNAAGCAAAACGTA--TTGCTGANATTGAAATCGAATTANA--TAATCATNCAGCCGA 517 consensus_1484#1 GCTAAAACATGTTCTGATTCACACAAAACAGAATCAACCCAACACCAATCATCAACACGC 515 *** ** ** * * * * * **** * * ****** * ** consensus_1484#0 AATCTTAGAAGCAGCTCGAAAGGGAAT--CGATGAATTAAATNACANAGCTTCG--AATC 573 consensus_1484#1 ANACATTAATTTAGTTTAGTTTTCGATGATNATAAAGAANACAACAACGTATTACTGATC 575 * * * * ** * ** ** ** * * *** * * *** consensus_1484#0 --TCANAATTACNGCTTTTATGGACGCACAAAGCAAAG 609 consensus_1484#1 GATCATGATGATTAACTTTCTTTTTTCATAGT------ 607 *** ** * *** * ** * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||