These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14845#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1358 fasta sequence [TACTTACCCTCCCTTCTGATCCCCTGTTTCCCCTGGTCATGGCGGCGAGATCTCCGTGTAGGAGTGAGATCGCCGCCTCCTCCTCATGGTGTTTCCTGGTGCGGCGCGCGTGAGAGCTCGGCCCGAGCCCGAGCCCTCTCGCTTTTGCCGTGCCGGATCTGATTCTGTCCGTGCTAGTGTTAGTGTCACGTTTTGGTGTAGACAGTAGACTCATGAAACGAGGAGAGGCTTTTTTGTAGGATGGGTCAACTTTTAGGAACTTGTCCAAAGTTTAACAACTCTCAAGGATGAACTGGGAATAGTGGCGCTGTTATACATTAGGAGTTGGTCTGCGAGAAATTTGGATGGGATTAGTTGCGGATCTTCCATCAGCTAGTGGAGCTTAAAGATACTGATGTGTTGTCCGTACTGAAATGCACTTCTTTGCCTTGGCAAAACCCCAGTCTCCCCCATAAATTTAGTTTTGTTTGCTTAGCTTTACCAAATGCCATCAGCATACATGGTGTAAAATCATATACTTTTGTAACGAACGAATTGTGTTTATTTGCATTTCAACTAGTGCTTTCTTCCTAATTTATCAGGACTATCGAGATGGCAACTGCAACTGCTCCGAGATTGTGCTTTCCTAAACCCGGCGCGGCCATTGCTCCGGCGACCAAGAGCCCTTCCTTCATTGGTTACGCAAAGCAAACATTGAACATGTCAGGCCTAAGGATCTCCAACAAGTTCAGGGTGTCCGCGACAGCGGTGCACAAGGTAAAGCTTATAGGCCCGGACGGTGTCGAGCACGAGTTTGAAGCCCCTGAAGATA-CCT-AC-ATTCTCGAGGCCGC-TGAAA-CTGCCGGGGTGGAGCTGCCATTCTCATGCCGTGCTGGATCATGCTCCACATGTGCGGGTAAGATGTCATCGGGAGAAGTTGATCAGTCGGAAGGATCCTTCCTCGACGAGAACCAGATGGGCGAGGGATACGTTCTGACATGCATTTCGTACCCTAAGGCGGATTGCGTCATTCACACCCACAAGGAGGAAGAACTCTACT-AGGTCGCTCTTTTTATGCTTCTGTGGGCACATTTGCTGA-TTTCAAAGTGGACTCGCTGTTCAGTTAGTTTTCGCTATCCAAAAAATGGCCATATCTTTGTA-TTAGTCTTTTGATGGGACCGTGTCATATGAGTTGTGACAATAATTGTCGTAGTCCTGTTCAGCATTTCAAATTGCGTTTGTTCAATTCACAGCAGGTCCAACTTCCAACGATGACATGTTATCAGAAGTTGTGTGTAATGGTATTATTGTGGATCACTTCCAGTAGGAAAAAAAAAACTTGTCCTTTCTCCAAAAAATATTTTGCAAGATGAATCAGAAGT] [+] EMBL AK103416 [TACTTACCCTCCCTTCTGATCCCCTGTTTCCCCTGGTCATGGCGGCGAGATCTCCGTGTAGGAGTGAGATCGCCGCCTCCTCCTCATGGTGTTTCCTGGTGCGGCGCGCGTGAGAGCTCGGCCCGAGCCCGAGCCCTCTCGCTTTTGCCGTGCCGGATCTGATTCTGTCCGTGCTAGTGTTAGTGTCACGTTTTGGTGTAGACAGTAGACTCATGAAACGAGGAGAGGCTTTTTTGTAGGATGGGTCAACTTTTAGGAACTTGTCCAAAGTTTAACAACTCTCAAGGATGAACTGGGAATAGTGGCGCTGTTATACATTAGGAGTTGGTCTGCGAGAAATTTGGATGGGATTAGTTGCGGATCTTCCATCAGCTAGTGGAGCTTAAAGATACTGATGTGTTGTCCGTACTGAAATGCACTTCTTTGCCTTGGCAAAACCCCAGTCTCCCCCATAAATTTAGTTTTGTTTGCTTAGCTTTACCAAATGCCATCAGCATACATGGTGTAAAATCATATACTTTTGTAACGAACGAATTGTGTTTATTTGCATTTCAACTAGTGCTTTCTTCCTAATTTATCAGGACTATCGAGATGGCAACTGCAACTGCTCCGAGATTGTGCTTTCCTAAACCCGGCGCGGCCATTGCTCCGGCGACCAAGAGCCCTTCCTTCATTGGTTACGCAAAGCAAACATTGAACATGTCAGGCCTAAGGATCTCCAACAAGTTCAGGGTGTCCGCGACAGCGGTGCACAAGGTAAAGCTTATAGGCCCGGACGGTGTCGAGCACGAGTTTGAAGCCCCTGAAGATA CCT AC ATTCTCGAGGCCGC TGAAA CTGCCGGGGTGGAGCTGCCATTCTCATGCCGTGCTGGATCATGCTCCACATGTGCGGGTAAGATGTCATCGGGAGAAGTTGATCAGTCGGAAGGATCCTTCCTCGACGAGAACCAGATGGGCGAGGGATACGTTCTGACATGCATTTCGTACCCTAAGGCGGATTGCGTCATTCACACCCACAAGGAGGAAGAACTCTACT AGGTCGCTCTTTTTATGCTTCTGTGGGCACATTTGCTGA TTTCAAAGTGGACTCGCTGTTCAGTTAGTTTTCGCTATCCAAAAAATGGCCATATCTTTGTA TTAGTCTTTTGATGGGACCGTGTCATATGAGTTGTGACAATAATTGTCGTAGTCCTGTTCAGCATTTAAAATTGCGTTTGTTCAATTCACAGCAGGTCCAACTTCCAACGATGACATGTTATCAGAAGTTGTGTGTAATGGTATTATTGTGGATCACTTCCAGTAGGAAAAAATTGACTTG ] [+] EMBL AU085797 [ TTGTGCTTTCCTAAACCCGGCGCGGCCATTGCTCCGGCGACCAAGAGCCCTTCCTTCATTGGTTACGCAAAGCAAACATTGAACATGTCAGGCCTAAGGATCTCCAACAAGTTCAGGGTGTCCGCGACAGCGGTGCACAAGGTAAAGCTTATAGGCCCGGACGGTGTCGAGCACGAGTTTGAAGCCCCTGAAGATA CCT AC ATTCTCGAGGCCGC TGAAA CTGCCGGGGTGGAGCTGCCATTCTCATGCCGTGCTGGATCATGCTCCACATGTGCGGGTAAGATGTCATCGGGAGAAGTTGATCAGTCGGAAGGATCCTTCCTCGACGAGAACCAGATGGGCGAGGGATACGTTCTGACATGCATTTCGTACCCTAAGGCGGATTGCGTCATTCACACCCACAAGGAGGAAGAACTCTACT AGGTCGCTCTTTTTATGCTTCTGTGGGCACATTTGCTGA TTTCAAAGTGGACTCGCTGTTCAGTTAGTTTTCGCTATCCAAAAAATGGCCATATCTTTGTA TTAGTCTTTTGATGGGACCGTGTCATATGAGTTGTGACAATAATTGTCGTAGTCCTGTTCAGCATTTCAAATTGCGTTTGTTCAATTCACAGCAGGTCCAACTTCCAACGATGACATGTTATCAGAAGTTGTGTGTAATGGTATTATTGTGGATCACTTCCAGTAGGAAAAAA ] [-] EMBL CF279625 [ GTGTCCGCGACAGCGGTGCACAAGGTAAAGCTTATAGGCCCGGACGGTGTCGAGCACGAGTTTGAAGCCCCTGAAGATA CCT AC ATTCTCGAGGCCGC TGAAA CTGCCGGGGTGGAGCTGCCATTCTCATGCCGTGCTGGATCATGCTCCACATGTGCGGGTAAGATGTCATCGGGAGAAGTTGATCAGTCGGAAGGATCCTTCCTCGACGAGAACCAGATGGGCGAGGGATACGTTTTGACATGCATTTCGTACCCTAAGGCGGATTGCGTCATTCACACCCACAAGGAGGAAGAACTCTACT AGGTCGCTCTTTTTATGCTTCTGTGGGCACATTTGCTGA TTTCAAAGTGGACTCGCTGTTCAGTTAGTTTTCGCTATCCAAAAAATGGCCATATCTTTGTA TTAGTCTTTTGATGGGACCGTGTCATATGAGTTGTGACAATAATTGTCGTAGTCCTGTTCAGCATTTCAAATTGCGTTTGTTCAATTCACAGCAGGTCCAACTTCCAACGATGACATGTTATCAGAAGTTGTGTGTAATGGTATTATTGTGGATCACTTCCAGTAGGAAAAAAAAA ] [-] EMBL CF277880 [ CTTATAGGCCCGGACGGTGTCGAGCACGAGTTTGAAGCCCCTGAAGATA CCT AC ATTCTCGAGGCCGC TGAAA CTGCCGGGGTGGAGCTGCCATTCTCATGCCGTGCTGGATCATGCTCCACATGTGCGGGTAAGATGTCATCGGGAGAAGTTGATCAGTCGGAAGGATCCTTCCTCGACGAGAACCAGATGGGCGAGGGATACGTTTTGACATGCATTTCGTACCCTAAGGCGGATTGCGTCATTCACACCCACAAGGAGGAAGAACTCTACT AGGTCGCTCTTTTTATGCTTCTGTGGGCACATTTGCTGA TTTCAAAGTGGACTCGCTGTTCAGTTAGTTTTCGCTATCCAAAAAATGGCCATATCTTTGTA TTAGTCTTTTGATGGGACCGTGTCATATGAGTTGTGACAATAATTGTCGTAGTCCTGTTCAGCATTTCAAATTGCGTTTGTTCAATTCACAGCAGGTCCAACTTCCAACGATGACATGTTATCAGAAGTTGTGTGTAATGGTATTATTGTGGATCACTTCCAGTAGGAAAAAAAAA ] [+] EMBL BI798476 [ cccCCCCTGAAGATACCCTCACTTTTCTGGAGCCCTCTTGAAACCTCCCGGGGTGGA CTCCCATTCTCAT CCGT CTGGATCATGCTCCACATGTGCGGGTAAGATGTCATCGGGAGAAGTTGATCAGTCGGAAGGATCCTTCCTCGACGAGAACCAGATGGGCGAGGGATACGTTCTGACATGCATTTCGTACCCTAAGGCGGATTGCGTCATTCACACCCACAAGGAGGAAGAACTCTACT AGGTCGCTCTTTTTATGCTTCTGTGGGCACATTTGCTGA TTTCAAAGTGGACTCGCTGTTCAGTTAGTTTTCGCTATCCAAAAAATGGCCATATCTTTGTACTTAGTCTTTTGATGGGACCGTGTCATATGAGTTGTGACAATAATTGTCGTAGTCCTGTTCAGCATTTCAAACTGCGTTTGTTCAATTCACAGCAGGTCCAACTTCCAACGATGACATGTTATCAGAAGTTGTGTGTAATGGTATTATTGTGGATCACTTCCAGTAGGAAAAAAAA ] [-] EMBL CF279597 [ CCGGGGTGGAGCTGCCATTCTCATGCCGTGCTGGATCATGCTCCACATGTGCGGGTAAGATGTCATCGGGAGAAGTTGATCAGTCGGAAGGATCCTTCCTCGACGAGAACCAGATGGGCGAGGGATACGTTCTGACATGCATTTCGTACCCTAAGGCGGATTGCGTCATTCACACCCACAAGGAGGAAGAACTCTACT AGGTCGCTCTTTTTATGCTTCTGTGGGCACATTTGCTGA TTTCAAAGTGGACTCGCTGTTCAGTTAGTTTTCGCTATCCAAAAAATGGCCATATC TAGTN TTAGTCTTTTGATGGGACCGAGTCATATGAGTTGTGACAATAAAAGTCGTAGTCCTGTTCAGCATTTCAAATTGCGTTTGTTCAATTCACAGCAGGTCCAACTTCCAACGATGACATGTTATCAGAAGTTGTGTGTAATGGTATTATTGTGGATCACTTCCAGTAGGAAAAAAAAAACTTGTCCTTTCTCCAAAAAA ] [-] EMBL BU667038 [ CTGGATCATGCTCCACATGTGCGGGTAAGATGTCATCGGGAGAAGTTGATCAGTCGGAAGGATCCTTCCTCGACGAGAACCAGATGGGCGA GGATAC TTCTGACAAGCATTTCGTACCCTAA GCGGATTGCGTCATTCACACCCACAAGGAGGAAGAACTCTACTNCGGTCGCTCTTTTTAT CTTCTGT GGCACATT CTGATTTTCAAAGT GACTCCCTGTTCAGTTAGTTTTCG ] [+] EMBL CF312303 [ CTTCCTCGACGAGAACCAGATGGGCGAGGGATACGTTCTGACATGCATTTCGTACCCTAAGGCGGATTGCGTCATTCACACCCACAAGGAGGAAGAACTCTACT AGGTCGCTCTTTTTATGCTTCTGTGGGCACATTTGCTGA TTTCAAAGTGGACTCGCTGTTCAGTTAGTTTTCGCTATCCAAAAAATGGCCATATCTTTGTA TTAGTCTTTTGATGGGACCGTGTCATATGAGTTGTGACAATAATTGTCGTAGTCCTGTTCAGCATTTCAAATTGCGTTTGTTCAATTCACAGCAGGTCCAACTTCCAACGATGACATGTTATCAGAAGTTGTGTGTAATGGTATTATTGTGGATCACTTCCAGTAGGAAAAAATTGACTTGTCCTTTCTCCACACGCTATTTTGCAAGATGAATCAGAAGT] consensusID : consensus_14845#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 897 fasta sequence [TGGACTGAAGGAGTAGAAACCATCTTTTCGACTCGGCTTGACCCAACCCAACCTACCTCGCGATCCCCCCCTCCTCCGCCGCCGTCTCGTCGAGAGAGAGAGAGAGAGAAGGACTATCGAGATGGCAACTGCAACTGCTCCGAGATTGTGCTTTCCTAAACCCGGCGCGGCCATTGCTCCGGCGACCAAGAGCCCTTCCTTCATTGGTTACGCAAAGCAAACATTGAACATGTCAGGCCTAAGGATCTCCAACAAGTTCAGGGTGTCCGCGACA-GCG-GTG-CACAAGGTAAAGC-TTATA-GGCCCGGACGGTGTC-GAGCACGAG-TTTGAA-GCCCCTGAAGATACCTACATTC-TCGA--GGCCGCTGAAACT-GCCGGGGTGGAGCTGCCATTCTCATGCCGTGC-TGGATCATGCTCCACATGTGC-GGGTAAGATGTCATCGGGAGAAGTTGATCAGTCGGAAGGATCCTTCCTCGACGAGAACCAGATGGGCGA-GGGATACGTTCTGACATGCATTTCGTACCCTAAGGCGGATTGCGTCATTCACACCCACAAGGAGGAAGAACTCTACTAGGTCGCTCTTTTTATGCTTCTGTGGGCACATTTGCTGATTTCAAAGTGGACTCGCTGCTCAGTTAGTTTTCGCTATCCAAAAAATGGCCATATCTTTGTATTAGTCTTTTGATGGGACCGTGTCATATGAGTTGTGACAATAATTGTCGTAGTCCTGTTCAGCATTTCAAACTGCGTTTGTTCAATTCACAGCAGGTCCAACTTCCAACGATGACATGTTATCAGAAGTTGTGTGTAAAGGTATTATTGTGGATCACTTCCAGTTGGAAAAAATTGACTTGNCCTTTCTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGCGG] [+] EMBL CF277881 [TGGACTGAAGGAGTAGAAACCATCTTTTCGACTCGGCTTGACCCAACCCAACCTACCTCGCGATCCCCCCCTCCTCCGCCGCCGTCTCGTCGAGAGAGAGAGAGAGAGAAGGACTATCGAGATGGCAACTGCAACTGCTCCGAGATTGTGCTTTCCTAAACCCGGCGCGGCCATTGCTCCGGCGACCAAGAGCCCTTCCTTCATTGGTTACGCAAAGCAAACATTGAACATGTCAGGCCTAAGGATCTCCAACAAGTTCAGGGTGTCCGCGACA GCG GTG CACAAGGTAAAGC TTATA GGCCCGGACGGTGTC GAGCACGAG TTTGAA GCCCCTGAAGATACCTACATTC TCGA GGCCGCTGAAACT GCCGGGGTGGAGCTGCCATTCTCATGCCGTGC TGGATCATGCTCCACATGTGC GGGTAAGATG ] [+] EMBL CB097137 [ TCGACTCGGCTTGACCCAACCCAACCTACCTCGCGATCCCCC CCTCCGCCGCCGTCTCG GAGAGAGAGAGAGAAGGACTATCGAGATGGCAACTGCAACTGCTCCGAGATTGTGCTTTCCTAAACCCGGCGCGGCCATTGCTCCGGCGACCAAGAGCCCTTCCTTCATTGGTTACGCAAAGCAAACATTGAACATGTCAGGCCTAAGGATCTCCAACAAGTTCAGGGTGTCCGCGACA GCG GTG CACAAGGTAAAGC TTATA GGCCCGGACGGTGTC GAGCACGAG TTTGAA GCCCCTGAAGATACCTACATTC TCGA GGCCGCTGAAACT GCCGGGGTGGAGCTGCCATTCTCATGCCGTGC TGGATCATGCTCCACATGTGC GGGTAAGATGTCATCGGGAGAAGTTGATCAGTCGGAAGGATCCTTCCTCGACGAGAACCAGATGGGCGA GGGATACGTTCTGACATGCATTTCGTACCCTAAGGCGGATTGCGTCATTCACACCCACAAGGAGGAAGAACTCTACTAGGTCGCTCTTTTTATGCTTCTGTGGGCACATTTGCTGATTTCAAAGTGGACTCGCTGCTCAGTTAGTTTTCGCTATCCAAAAAATGGCCATATCTTTGTATTAGTCTTTTGATGGGACCGTGTCATATGAGTTGTGACAATAATTGTCGTAGTCCTGNTCAGCATTTCAAACTGCGNTTGGTCAATTCACAGCAGGTCCAACTTCCAACGATGACATGNTATCAana ] [+] EMBL CF279596 [ CGGCTTGACCCAACCCAACCTACCTCGCGATCCCCCCCTCCTCCGCCGCCGTCTCGTCGAGAGAGAGAGAGAGAGAAGGACTATCGAGATGGCAACTGCAACTGCTCCGAGATTGTGCTTTCCTAAACCCGGCGCGGCCATTGCTCCGGCGACCAAGAGCCCTTCCTTCATTGGTTACGCAAAGCAAACATTGAACATGTCAGGCCTAAGGATCTCCAACAAGTTCAGGGTGTCCGCGACA GCG GTG CACAAGGTAAAGC TTATA GGCCCGGACGGTGTC GAGCACGAG TTTGAA GCCCCTGAAGATACCTACATTC TCGA GGCCGCTGAAACTGGCCGGGGTGGAGCTGCCATTCTCATGCCGTGC TGGATCATGCTCCACATGTGC GGGTAAGATGTCATCGGGAGAAGTTGATCAGTCGGAAGGATCCTTCCTCGACGAGAACCAGATGGGCGAGGGGATACGTTCTGACATGCATTTCGTACCCTAAGGCGGATTGCGTCATTCACACCCACAAGGAGGAAGAACTCTACTAGGTCGCTCTTTTTATGCTTCTGTGGGCACATTTGC ] [+] EMBL C27992 [ CAACCCAACCTACCTCGCGATCCCCCCCTCCTCCGCCGCCGTCTCGTCGAGAGAGAGAGAGAGAGAAGGACTATCGAGATGGCAACTGCAACTGCTCCGAGATTGTGCTTTCCTAAACCCGGCGCGGCCATTGCTCCGGCGACCAAGAGCCCTTCCTTCATTGGTTACGCAAAGCAAACATTGAACATGTCAGGCCTAAGGTTCTCCAACAAGTTCAGGGTGTCCGCGACA CGTNNG CACAAGGTAAAGC TTATA GGCCCGGACGGTGTC GAGCACGAGTTTTNAA GCCCCTGAAGATACCTACATTC T ] [+] EMBL AU063700 [ CTACCTCGCGATCCCCCCCTCCTCCGCCGCCGTCTCGTCGAGAGAGAGAGAGAGAGAAGGACTATCGAGATGGCAACTGCAACTGCTCCGAGATTGTGCTTTCCTAAACCCGGCGCGGCCATTGCTCCGGCGACCAAGAGCCCTTCCTTCATTGGTTACGCAAAGCAAACATTGAACATGTCAGGCCTAAGGATCTCCAACAAGTTCAGGGTGTCCGCGACA GTG CNA CA AAGGTAAAGC TTATA GGCCCGGACGGTGTC GAGCACGAG TTTGAA GCCCCTNAAGATACCTACATTC TCGA GGCCGCTGAAACT GCCGGGGTGGAGCTGCCATTCTCATGCCGTGCTTGGATCATGCTTCACATGTTCNGGGTAAGATGTCATCGGGAGAAGTTGATCAGTCGGAAGGATCCTTCCTCGACGAGAACCAGATGGGCGA NGGATACGTT TTACATGCATTTNG ACCt ] [+] EMBL AU063708 [ CTACCTCGCGATCCCCCCCTCCTCCGCCGCCGTCTCGTCGAGAGAGAGAGAGAGAGAAGGACTATCGAGATGGCAACTGCAACTGCTCCGAGATTGTGCTTTCCTAAACCCGGCGCGGCCATTGCTCCGGCGACCAAGAGCCCTTCCTTCATTGGTTACGCAAAGCAAACATTGAACATGTCAGGCCTAAGGATCTCCAACAAGTTCAGGGTGTCCGCGACA GTG NCGACA AAGGTAAAGCTTTATAGGGCCNGGACGGTGTCGGAGCACGAG TTTGAAGGCCCCTGAAGATACCTACATTCTTNGAGGGGCCGCTGAAAC ] [+] EMBL CA759961 [ TCGTCGAGAGAGAGAGAGAGAGAAGGACTATCGAGATGGCAACTGCAACTGCTCCGAGATTGTGCTTTCCTAAACCCGGCGCGGCCATTGCTCCGGCGACCAAGAGCCCTTCCTTCATTGGTTACGCAAAGCAAACATTGAACATGTCAGGCCTAAGGATCTCCAACAAGTTCAGGGTGTCCGCGACA GCG GTG CACAAGGTAAAGC TTATA GGCCCGGACGGTGTC GAGCACGAG TTTGAA GCCCCTGAAGATACCTACATTC TCGA GGCCGCTGAAACT GCCGGGGTGGAGCTGCCATTCTCATGCCGTGC TGGATCATGCTCCACATGTGC GGGTAAGATGTCATCGGGAGAAGTTGATCAGTCGGAAGGATCCTTCCTCGACGAGAACCAGATGGGCGA GGGATACGTTCTGACATGCATTTCGTACCCTAAGGCGGATTGCGTCATTCACACCCACAAGGAGGAAGAACTCTACTAGGTCGCTCTTTTTATGCTTCTGTGGGCACATTTGCTGATTTCAAAGTGGACTCGCTGCTCAGTTAGTTTTCGCTATCCAAAAAATGGCCATATCTTTGTATTAGTCTTTTGATGGGACCGTGTCATATGAGTTGTGACAATAATTGTCGTAGTCCTGTTCAGCATTTCAAACTGCGTTTGTTCAATTCACAGCAGGTCCAACTTCCAACGATGACATGTTATCAGAAGTTGTGTGTAAA ] [+] EMBL OS0812A [ TCGTCGAGAGAGANANAGAGAGAAGGACTATCGAGATGGCAACTGCAACTGCTCCGAGATTGTNCTTTCCTAAACCCGGCGCGGCCATTGCTCCGGCGACCAAGAGCCCTTCCTTCATTGGTTACGCAAAGCAAACATTGAACATGTCAGGCCTAAGGATCTCCAACAAGTTCAGGGTGTCCGCGACAGGTN GT CACAAGGTAAAGC TTATA GGCCCGGACGGTGTC GAGCACGAG TTTGAA GCCCCTGAAGATACCTACATTC TCGA GGCCGCTGAAACT GCCGGGGTGGNGCTGCCATTNTNATGCCGTGC TGGA ] [+] EMBL OSRF [ gccgcCGAG TTTGAA GCCCCTGAAGATACCTACATTC TCGA GGCCGCTGAAACT GCCGGGGTGGAGCTGCCATTCTCATGCCGTGC TGGATCATGCTCCACATGTGC GGGTAAGATGTCATCGGGAGAAGTTGATCAGTCGGAAGGATCCTTCCTCGACGAGAACCAGATGGGCGA GGGATACGTTCTGACATGCATTTCGTACCCTAAGGCGGATTGCGTCATTCACACCCACAAGGAGGAAGAACTCTACTAGGTCGCTCTTTTTATGCTTCTGTGGGCACATTTGCTGATTTCAAAGTGGACTCGCTGTTCAGTTAGTTTTCGCTATCCAAAAAATGGCCATATCTTTGTATTAGTCTTTTGATGGGACCGTGTCATATGAGTTGTGACAATAATTGTCGTAGTCCTGTTCAGCATTTCAAATTGCGTTTGTTCAATTCACAGCAGGTCCAACTTCCAACGATGACATGTTATCAGAAGTTGTGTGTAATGGTATTATTGTGGATCACTTCCAGTTGGAAAAAATTGACTTGNCCTTTCTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGCGG] consensusID : consensus_14845#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 463 fasta sequence [GGGGAGGGAAACGTTTTGACAAGCATTTTGTCCCCTAAGGGGGATTGGGTCATTCCCCCCCCCAAGGAGGAAGAACTTTAAAAGGGGGCTTTTTTTAAGGTTTTGGGGGCCCATTTGTTGATTTCAAAGGGGACTCCCTGTTCAGTTAGTTTTCGCTATCCAAAAAAAGGCCAAATCTTTGGATTAGTTTTTTGAGGGGGCCGGGTCATATGAGTTGGGCCAAAAATTGTGGGAGTCCTGTTCAGCATTTCAAAAGGGGTTTGTTCAATTCCCAGCAGGTCCAACTTCCAACGATGACATGTTATCAAAAGTTGGGGGGAAAGGGATTATTGGGGATCCCTTCCAGTAGGAAAAAATTGATTTGTCCTTTTTCCCCCCGGTTTTTTGCAAAATGAATCAAAAGTTCCGCCCTTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CF312302 [GGGGAGGGAAACGTTTTGACAAGCATTTTGTCCCCTAAGGGGGATTGGGTCATTCCCCCCCCCAAGGAGGAAGAACTTTAAAAGGGGGCTTTTTTTAAGGTTTTGGGGGCCCATTTGTTGATTTCAAAGGGGACTCCCTGTTCAGTTAGTTTTCGCTATCCAAAAAAAGGCCAAATCTTTGGATTAGTTTTTTGAGGGGGCCGGGTCATATGAGTTGGGCCAAAAATTGTGGGAGTCCTGTTCAGCATTTCAAAAGGGGTTTGTTCAATTCCCAGCAGGTCCAACTTCCAACGATGACATGTTATCAAAAGTTGGGGGGAAAGGGATTATTGGGGATCCCTTCCAGTAGGAAAAAATTGATTTGTCCTTTTTCCCCCCGGTTTTTTGCAAAATGAATCAAAAGTTCCGCCCTTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14845#0 TACTTACCCTCCCTTCTGATCCCCTGTTTCCCCTGGTCATGGCGGCGAGATCTCCGTGTA 60 consensus_14845#1 ------------------------------------------------------------ consensus_14845#2 ------------------------------------------------------------ consensus_14845#0 GGAGTGAGATCGCCGCCTCCTCCTCATGGTGTTTCCTGGTGCGGCGCGCGTGAGAGCTCG 120 consensus_14845#1 ------------------------------------------------------------ consensus_14845#2 ------------------------------------------------------------ consensus_14845#0 GCCCGAGCCCGAGCCCTCTCGCTTTTGCCGTGCCGGATCTGATTCTGTCCGTGCTAGTGT 180 consensus_14845#1 ------------------------------------------------------------ consensus_14845#2 ------------------------------------------------------------ consensus_14845#0 TAGTGTCACGTTTTGGTGTAGACAGTAGACTCATGAAACGAGGAGAGGCTTTTTTGTAGG 240 consensus_14845#1 ------------------------------------------------------------ consensus_14845#2 ------------------------------------------------------------ consensus_14845#0 ATGGGTCAACTTTTAGGAACTTGTCCAAAGTTTAACAACTCTCAAGGATGAACTGGGAAT 300 consensus_14845#1 ------------------------------------------------------------ consensus_14845#2 ------------------------------------------------------------ consensus_14845#0 AGTGGCGCTGTTATACATTAGGAGTTGGTCTGCGAGAAATTTGGATGGGATTAGTTGCGG 360 consensus_14845#1 ------------------------------------------------------------ consensus_14845#2 ------------------------------------------------------------ consensus_14845#0 ATCTTCCATCAGCTAGTGGAGCTTAAAGATACTGATGTGTTGTCCGTACTGAAATGCACT 420 consensus_14845#1 ------------------------------------------------------------ consensus_14845#2 ------------------------------------------------------------ consensus_14845#0 TCTTTGCCTTGGCAAAACCCCAGTCTCCCCCATAAATTTAGTTTTGTTTGCTTAGCTTTA 480 consensus_14845#1 ------------------------------------------------TGGACTGAAGGA 12 consensus_14845#2 ------------------------------------------------------------ consensus_14845#0 CCAAATGCCATCAGCAT-ACATGGTGTAAAATCATATACTTTTGTAACGAACGAATTGTG 539 consensus_14845#1 GTAGAAACCATCTTTTCGACTCGGCTTGACCCAACCCAACCT---ACCTCGCGATCCCCC 69 consensus_14845#2 ------------------------------------------------------------ consensus_14845#0 TTTATTTGCATTTCAACTAGTGCTTTCTTCCTAATTTATCAGGACTATCGAGATGGCAAC 599 consensus_14845#1 CCTCCTCCGCCGCCGTCTCGTCGAGAGAGAGAGAGAGAGAAGGACTATCGAGATGGCAAC 129 consensus_14845#2 ------------------------------------------------------------ consensus_14845#0 TGCAACTGCTCCGAGATTGTGCTTTCCTAAACCCGGCGCGGCCATTGCTCCGGCGACCAA 659 consensus_14845#1 TGCAACTGCTCCGAGATTGTGCTTTCCTAAACCCGGCGCGGCCATTGCTCCGGCGACCAA 189 consensus_14845#2 ------------------------------------------------------------ consensus_14845#0 GAGCCCTTCCTTCATTGGTTACGCAAAGCAAACATTGAACATGTCAGGCCTAAGGATCTC 719 consensus_14845#1 GAGCCCTTCCTTCATTGGTTACGCAAAGCAAACATTGAACATGTCAGGCCTAAGGATCTC 249 consensus_14845#2 ------------------------------------------------------------ consensus_14845#0 CAACAAGTTCAGGGTGTCCGCGACAGCGGTGCACAAGGTAAAGCTTATAGGCCCGGACGG 779 consensus_14845#1 CAACAAGTTCAGGGTGTCCGCGACAGCGGTGCACAAGGTAAAGCTTATAGGCCCGGACGG 309 consensus_14845#2 ------------------------------------------------------------ consensus_14845#0 TGTCGAGCACGAGTTTGAAGCCCCTGAAGATACCTACATTCTCGAGGCCGCTGAAACTGC 839 consensus_14845#1 TGTCGAGCACGAGTTTGAAGCCCCTGAAGATACCTACATTCTCGAGGCCGCTGAAACTGC 369 consensus_14845#2 ------------------------------------------------------------ consensus_14845#0 CGGGGTGGAGCTGCCATTCTCATGCCGTGCTGGATCATGCTCCACATGTGCGGGTAAGAT 899 consensus_14845#1 CGGGGTGGAGCTGCCATTCTCATGCCGTGCTGGATCATGCTCCACATGTGCGGGTAAGAT 429 consensus_14845#2 ------------------------------------------------------------ consensus_14845#0 GTCATCGGGAGAAGTTGATCAGTCGGAAGGATCCTTCCTCGACGAGAACCAGATGGGCGA 959 consensus_14845#1 GTCATCGGGAGAAGTTGATCAGTCGGAAGGATCCTTCCTCGACGAGAACCAGATGGGCGA 489 consensus_14845#2 -------------------------------------------------------GGGGA 5 ** ** consensus_14845#0 GGGATACGTTCTGACATGCATTTCGTACCCTAAGGCGGATTGCGTCATTCACACCCACAA 1019 consensus_14845#1 GGGATACGTTCTGACATGCATTTCGTACCCTAAGGCGGATTGCGTCATTCACACCCACAA 549 consensus_14845#2 GGGAAACGTTTTGACAAGCATTTTGTCCCCTAAGGGGGATTGGGTCATTCCCCCCCCCAA 65 **** ***** ***** ****** ** ******** ****** ******* * *** *** consensus_14845#0 GGAGGAAGAACTCTACTAGGTCGCTCTTTTTATGCTTCTGTGGGCACATTTGCTGATTTC 1079 consensus_14845#1 GGAGGAAGAACTCTACTAGGTCGCTCTTTTTATGCTTCTGTGGGCACATTTGCTGATTTC 609 consensus_14845#2 GGAGGAAGAACTTTAAAAGGGGGCTTTTTTTAAGGTTTTGGGGGCCCATTTGTTGATTTC 125 ************ ** *** *** ****** * ** ** **** ****** ******* consensus_14845#0 AAAGTGGACTCGCTGTTCAGTTAGTTTTCGCTATCCAAAAAATGGCCATATCTTTGTATT 1139 consensus_14845#1 AAAGTGGACTCGCTGCTCAGTTAGTTTTCGCTATCCAAAAAATGGCCATATCTTTGTATT 669 consensus_14845#2 AAAGGGGACTCCCTGTTCAGTTAGTTTTCGCTATCCAAAAAAAGGCCAAATCTTTGGATT 185 **** ****** *** ************************** ***** ******* *** consensus_14845#0 AGTCTTTTGATGGGACCGTGTCATATGAGTTGTGACAATAATTGTCGTAGTCCTGTTCAG 1199 consensus_14845#1 AGTCTTTTGATGGGACCGTGTCATATGAGTTGTGACAATAATTGTCGTAGTCCTGTTCAG 729 consensus_14845#2 AGTTTTTTGAGGGGGCCGGGTCATATGAGTTGGGCCAAAAATTGTGGGAGTCCTGTTCAG 245 *** ****** *** *** ************* * *** ****** * ************ consensus_14845#0 CATTTCAAATTGCGTTTGTTCAATTCACAGCAGGTCCAACTTCCAACGATGACATGTTAT 1259 consensus_14845#1 CATTTCAAACTGCGTTTGTTCAATTCACAGCAGGTCCAACTTCCAACGATGACATGTTAT 789 consensus_14845#2 CATTTCAAAAGGGGTTTGTTCAATTCCCAGCAGGTCCAACTTCCAACGATGACATGTTAT 305 ********* * ************* ********************************* consensus_14845#0 CAGAAGTTGTGTGTAATGGTATTATTGTGGATCACTTCCAGTAGGAAAAAAAAAACTTGT 1319 consensus_14845#1 CAGAAGTTGTGTGTAAAGGTATTATTGTGGATCACTTCCAGTTGGAAAAAATTGACTTGN 849 consensus_14845#2 CAAAAGTTGGGGGGAAAGGGATTATTGGGGATCCCTTCCAGTAGGAAAAAATTGATTTGT 365 ** ****** * * ** ** ******* ***** ******** ******** * *** consensus_14845#0 CCTTTCTCCAAAAAATATTTTGCAAGATGAATCAGAAGT--------------------- 1358 consensus_14845#1 CCTTTCTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGCGG------------ 897 consensus_14845#2 CCTTTTTCCCCCCGGTTTTTTGCAAAATGAATCAAAAGTTCCGCCCTTGTAAAAAAAAAA 425 ***** *** ** * ** * ** consensus_14845#0 -------------------------------------- consensus_14845#1 -------------------------------------- consensus_14845#2 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 463 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||