Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 14869 cluster # 14869       Sequences # 18       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_14869#0 length = 1610 sequences # 16  
consensus_14869#1 length = 587 sequences # 2  

consensusID : consensus_14869#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 16
consensus length = 1610
fasta sequence
                              [AGCAGGAGTGGAGAGGAGAATCCGCCGCTGCGCCGTCTTCTTCTCCATTGAAGCCAAGCTCCCCCAGGCCTTCTCGTTCTCCCCCTCCTCCTCGAGCTCTCGCTGGTGCGGGGAGCGAAGTGGAGAGGAGAGGCCGAGAGGGACGAGAGATCGAGAGGGAGAGGGAGCACCGAAGCAGCGGGCGGCAGCATGCGGCCTTCGCTCCGTACTATCTATTTTCTTCTTTTGCTACTTCCACATGTGG-TTTTTTCTAGACCACTCTTTCCACTACCAAGCAAGAGTAATGGAATAGAGAAGAGACCCTTACAAACTTTTCGACCATATAACATTGCTCACCGTGGCTCAAATGGGGAAATTCCTGAGGAAACAGCTGCTGC-TTACCTGAGGGCTATTGAAGAAGGTGCGGATTTTATA-GAAACGGACATCCTTGCTAGCAAAGAT-GGGGCCTTGATCTGCTTTCATGATGTAACACTGGATGCTACAACTGACGTTGCCAGCCGCAA-GGAGTTTTCCAATAGAAGAAGAACCTACGA-GGT-GGAATGGTTCAACGCTACTGGCTGGTTTGTAGTGGACTTCACACTTGAGGAACTTAAAACACTGAAAGTCAATCAGCGATACCCATTCAGAGACCAACAATACAAT-GGCAAGTTTTCAATTATCACATTTGAAGAATTCATTTCTATTGCCTTGGATGCAAGCAGAACTGTCGGAATATACCCAGAGATGAAAGATCCAGTTTTTATCAACAAGCATGTCAAGTGGGATGGTGGGAAGAAGTTTGAGGACAAATTTGTGGATACCTTACTGAAGTATGGATATAAAGGCCAATATATGTCAGAAAATTGGCTGAAGCAGCCGTTGTTTATACAATCTTTTGCTCCTACTTCCCTTGTACATGCATCAAAGTTGACAGACTCTCCCAAGATATTCCTGATTGACGATTTCTCAGTGAGAACACAAGATACAAACCAGTCATACTGGGACATCACTTCTGATGACTACCTAGCATATATTAGTAACTATGTTGTTGGCCTTGGTCCA-TGGAAAGATACGGTTGTTCCAGC-AGCCAAAAACTATACGATGGCACCGACTGATCTTGTTGCAAGAGCACATGCT-CATAATCTTCAGGTACACCCGTACACATACAGGAACGAGA-ACCAATTCCTGCACCTCAACTTCCATCAGGACCCTTATGCTGAGTATGATTTCTGGATAAACA-GCATGGGGGTCGATGGATTGTTCACTGATTTCACTGGATCCCTGCACCGTTACCAGGAACTGGTAGCTCCACATGCGAAGGATGAAACTGCAAACAGCCTCCTAGTAAAAATTGCTCAAATGATCTCCCAATATGAAGGTTTCTGATCATGTTTTCCATTTTTCCGTTAATCGACATGCTTATATACACGCATTAGTGATCAAGGGTGACCTTGAATGTTACAGAACAAAAAAAAAAAGAAAAAAATACTTGTTTTCTGGTGGCTAGCAGTTAGAACGGATTGTAGACACCTCTATAACTATAAATCCCTGAATTGCGGGGAGAAATTTCTACAGTTGTAATAATTGTCTTTAAAACAGTTGTATCTGATTAGTTCCTTGAAACAAAGTTC]

[+] EMBL C26626               [AGCAGGAGTGGAGAGGAGAATCCGCCGCTGCGCCGTCTTCTTCTCCATTGAAGCCAAGNTCCCCCAGGCCTTCTCGTTCTCCCCCTCCTCCTCGAGCTCTCGCTGGTGCGGGGAGCGAAGTGNAGAGGAGAGGCCGAGAGGGACGAGAGATCGAGAGGGAGAGGGAGCACCGAAGCAGCGGGCGGCA NATGCGGCCTTCGCTCCGTACTATCTATTTTCTTCTTTTGCTACTTCCACATGTGG TTTTTTCTAGACCACTCTTTCCACTACCAAGCAAGAGTAATGGAATAGAGAAGAGACCCTTACAAACTTTTCGACCATATAACATTGCTCACCGTGGCTCAAATGGGGAAATTCCTGAGGAAACAGCTGCTGC TTACCTNAGGGCTATTGAGGAAGGTGCGGA TTTATA GAAc                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL OSS11193A            [     GAGTGGAGAGGAGAATCCGCCGCTGCGCCGTCTTCTTCTCCATTGAAGCCAAGCTCCCCCAGGCCTTCTCGTTCTCCCCCTCCTCCTCGAGCTCTCGCTGGTGCGGGGAGCGAAGTGGAGAGGAGAGGCCGAGAGGGACGAGAGATCGAGAGGGAGAGGGAGCACCGAAGCAGCGGGCGGCAG ATGCGGCCTTCGCTCCGTACTATCTATTTTCTTCTTTTGCTACTTCCACATGTGG TTTTTTCTAGACCACTCTTTCCACTACCAAGCAAGAGTAATGGAATAGAGAAGAGACCCTTACAAACTTTTCGACCATATAACATTGCTCACCGTGGTNCAAATGGGGAAATTCCTGAGGAAACAGTTG TGG TTACCTGAGGGTTATTGAAGAAGGTGCGGGTTTTATA GGAACGGACATCCTTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL AK066596             [           AGAGGAGAATCCGCCGCTGCGCCGTCTTCTTCTCCATTGAAGCCAAGCTCCCCCAGGCCTTCTCGTTCTCCCCCTCCTCCTCGAGCTCTCGCTGGTGCGGGGAGCGAAGTGGAGAGGAGAGGCCGAGAGGGACGAGAGATCGAGAGGGAGAGGGAGCACCGAAGCAGCGGGCGGCAGCATGCGGCCTTCGCTCCGTACTATCTATTTTCTTCTTTTGCTACTTCCACATGTGG TTTTTTCTAGACCACTCTTTCCACTACCAAGCAAGAGTAATGGAATAGAGAAGAGACCCTTACAAACTTTTCGACCATATAACATTGCTCACCGTGGCTCAAATGGGGAAATTCCTGAGGAAACAGCTGCTGC TTACCTGAGGGCTATTGAAGAAGGTGCGGATTTTATA GAAACGGACATCCTTGCTAGCAAAGAT GGGGCCTTGATCTGCTTTCATGATGTAACACTGGATGCTACAACTGACGTTGCCAGCCGCAA GGAGTTTTCCAATAGAAGAAGAACCTACGA GGT GGAATGGTTCAACGCTACTGGCTGGTTTGTAGTGGACTTCACACTTGAGGAACTTAAAACACTGAAAGTCAATCAGCGATACCCATTCAGAGACCAACAATACAAT GGCAAGTTTTCAATTATCACATTTGAAGAATTCATTTCTATTGCCTTGGATGCAAGCAGAACTGTCGGAATATACCCAGAGATGAAAGATCCAGTTTTTATCAACAAGCATGTCAAGTGGGATGGTGGGAAGAAGTTTGAGGACAAATTTGTGGATACCTTACTGAAGTATGGATATAAAGGCCAATATATGTCAGAAAATTGGCTGAAGCAGCCGTTGTTTATACAATCTTTTGCTCCTACTTCCCTTGTACATGCATCAAAGTTGACAGACTCTCCCAAGATATTCCTGATTGACGATTTCTCAGTGAGAACACAAGATACAAACCAGTCATACTGGGACATCACTTCTGATGACTACCTAGCATATATTAGTAACTATGTTGTTGGCCTTGGTCCA TGGAAAGATACGGTTGTTCCAGC AGCCAAAAACTATACGATGGCACCGACTGATCTTGTTGCAAGAGCACATGCT CATAATCTTCAGGTACACCCGTACACATACAGGAACGAGA ACCAATTCCTGCACCTCAACTTCCATCAGGACCCTTATGCTGAGTATGATTTCTGGATAAACA GCATGGGGGTCGATGGATTGTTCACTGATTTCACTGGATCCCTGCACCGTTACCAGGAACTGGTAGCTCCACATGCGAAGGATGAAACTGCAAACAGCCTCCTAGTAAAAATTGCTCAAATGATCTCCCAATATGAAGGTTTCTGATCATGTTTTCCATTTTTCCGTTAATCGACATGCTTATATACACGCATTAGTGATCAAGGGTGACCTTGAATGTTACAGAACAAAAAAAAAAAGAAAAAAATACTTGTTTTCTGGTGGCTAGCAGTTAGAACGGATTGTAGACACCTCTATAACTATAAATCCCTGAATTGCGGGGAGAAATTTCTACAGTTGTAATAATTGTCTTTAAAACAGTTGTATCTGATTAGTTCCTTGAAACAAAGTTC]
[+] EMBL AK061563             [                                                       AAGCTCCCCCAGGCCTTCTCGTTCTCCCCCTCCTCCTCGAGCTCTCGCTGGTGCGGGGAGCGAAGTGGAGAGGAGAGGCCGAGAGGGACGAGAGATCGAGAGGGAGAGGGAGCACCGAAGCAGCGGGCGGCAGCATGCGGCCTTCGCTCCGTACTATCTATTTTCTTCTTTTGCTACTTCCACATGTGG TTTTTTCTAGACCACTCTTTCCACTACCAAGCAAGAGTAATGGAATAGAGAAGAGACCCTTACAAACTTTTCGACCATATAACATTGCTCACCGTGGCTCAAATGGGGAAATTCCTGAGGAAACAGCTGCTGC TTACCTGAGGGCTATTGAAGAAGGTGCGGATTTTATA GAAACGGACATCCTTGCTAGCAAAGAT GGGGCCTTGATCTGCTTTCATGATGTAACACTGGATGCTACAACTGACGTTGCCAGCCGCAA GGAGTTTTCCAATAGAAGAAGAACCTACGA GGT GGAATGGTTCAACGCTACTGGCTGGTTTGTAGTGGACTTCACACTTGAGGAACTTAAAACACTGAAAGTCAATCAGCGATACCCATTCAGAGACCAACAATACAAT GGCAAGTTTTCAATTATCACATTTGAAGAATTCATTTCTATTGCCTTGGATGCAAGCAGAACTGTCGGAATATACCCAGAGATGAAAGATCCAGTTTTTATCAACAAGCATGTCAAGTGGGATGGTGGGAAGAAGTTTGAGGACAAATTTGTGGATACCTTACTGAAGTATGGATATAAAGGCCAATATATGTCAGAAAATTGGCTGAAGCAGCCGTTGTTTATACAATCTTTTGCTCCTACTTCCCTTGTACATGCATCAAAGTTGACAGACTCTCCCAAGATATTCCTGATTGACGATTTCTCAGTGAGAACACAAGATACAAACCAGTCATACTGGGACATCACTTCTGATGACTACCTAGCATATATTAGTAACTATGTTGTTGGCCTTGGTCCA TGGAAAGATACGGTTGTTCCAGC AGCCAAAAACTATACGATGGCACCGACTGATCTTGTTGCAAGAGCACATGCT CATAATCTTCAGGTACACCCGTACACATACAGGAACGAGA ACCAATTCCTGCACCTCAACTTCCATCAGGACCCTTATGCTGAGTATGATTTCTGGATAAACA GCATGGGGGTCGATGGATTGTTCACTGATTTCACTGGATCCCTGCACCGTTACCAGGAACTGGTAGCTCCACATGCGAAGGATGAAACTGCAAACAGCCTCCTAGTAAAAATTGCTCAAATGATCTCCCAATATGAAGGTTTCTGATCATGTTTTCCATTTTTCCGTTAATCGACATGCTTATATACACGCATTAGTGATCAAGGGTGACCTTGAAT                                                                                                                                                                              ]
[+] EMBL C26006               [                                                                                                CTCTCGCTGGTGCGGGGAGCGAAGTGNAGAGGAGAGGCCGAGAGGGACGAGAGATCGAGAGGGAGAGGGAGCACCGAAGCAGCGGGCGGCA CATGCGGCCTTCGCTCCGTACTATCTATTTTCTTCTTTTGCTACTTCCACATGTGG TTTTTTCTAGACCACTCTTTCCACTACCAAGCAAGAGTAATGGAATAGAGAAGAGACCCTTACAAACTTTTCGACCATATAACATTGCTCACCGTGGCTCAAATGGGGAAATTCCTGAGGAAACAGCTGCTGCTTTACCTGAGGGCTATTGAAGAAGGTGCGGATTTTATAGGNAACGGACATCCTTTCTAGCAAAGATGGGGGCCTT ATCTGCTTTCATGAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL OSC103051            [                                                                                                                                              ccnAGAGATCGAGAGGGAGAGGGAGCACCGAAGCAGCGGGCGGCA NATGCGGCCTTCGCTCCGTACTATCTATTTTCTTCTTTTGCTACTTCCACATGTGGTTTTTTTCTAGACCACTCTTTCCACTACCAAGCAAGAGTAATGGAATAGAGAAGAGACCCTTACAAACTTTTCGACCATATAACATTGCTCACCGTGGCTCAAATGGGGAAATTCCTGAGGAAACAGCTGCTGC TTACCTAAGGGCTATTGAAGAAGGTGCGGATTTTATA GAAACGGACATCCTTNCTAGCAAAGAT GGGGCCTTGATCTGCTTTCATGATGTAACACTGGATGCTACAACTGACGTTGCCAGCCGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CF280763             [                                                                                                                                                               AGAGGGAGCACCGAAGCAGCGGGCGGCAGCATGCGGCCTTCGCTCCGTACTATCTATTTTCTTCTTTTGCTACTTCC CATGTGG TTTTTTCTAGACCACTCTTTCCACTACCAAGCAAGAGTAATGGAATAGAGAAGAGACCCTTACAAACTTTTCGACCATATAACATTGCTCACCGTGGCTCAAATGGGGAAATTCCTGAGGAAACAGCTGCTGC TTACCTGAGGGCTATTGAAGAAGGTGCGGATTTTATA GAAACGGACATCCTTGCTAGCAAAGAT GGGGCCTTGATCTGCTTTCATGATGTAACACTGGATGCTACAACTGACGTTGCCAGCCGCAAGGGAGTTTTCCAATAGAAGAAGAACCTACGAGGGT GGAATGGTTCAACGCTACTGGCTGGTTTGTAGTGGACTTCACACTTGAGGAACTTAAAACACTGAAAGTCAATCAGCGATACCCATTCAGAGACCAACAATACAATGGGCAAGTTTTCAATTATCACATTTGAAGAATTCATTTCTATTGCCTTGGATGC AGCAGAACTGTCGGAATATCCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CF280185             [                                                                                                                                                               AGAGGGAGCACCGAAGCAGCGGGCGGCAGCATGCGGCCTTCGCTCCGTACTATCTATTTTCTTCTTTTGCTACTTCC CATGTGG TTTTTTCTAGACCACTCTTTCCACTACCAAGCAAGAGTAATGGAATAGAGAAGAGACCCTTACAAACTTTTCGACCATATAACATTGCTCACCGTGGCTCAAATGGGGAAATTCCTGAGGAAACAGCTGCTGC TTACCTGAGGGCTATTGAAGAAGGTGCGGATTTTATA GAAACGGACATCCTTGCTAGCAAAGAT GGGGCCTTGATCTGCTTTCATGATGTAACACTGGATGCTACAACTGACGTTGCCAGCCGCAA GGAGTTTTCCAATAGAAGAAGAACCTACGA GGTNGGAATGGTTCAACGCTACTGGCTGGTTTGTAGTGGACTTCACACTTGAGGAACTTAAAACACTGAAAGTCAATCAGCGATACCCATTCAGAGACCAACAATACAAT GGCAAGTTTTCAATTATCACATTTGAAGAATTCATTTCTATTGCCTTGGATGCAAGCAGAACTGTCGGAATta                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CF280392             [                                                                                                                                                               AGAGGGAGCACCGAAGCAGCGGGCGGCAGCATGCGGCCTTCGCTCCGTACTATCTATTTTCTTCTTTTGCTACTTCCACATGTGG TTTTTTCTAGACCACTCTTTCCACTACCAAGCAAGAGTAATGGAATAGAGAAGAGACCCTTACAAACTTTTCGACCATATAACATTGCTCACCGTGGCTCAAATGGGGAAATTCCTGAGGAAACAGCTGCTGC TTACCTGAGGGCTATTGAAGAAGGTGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL CA762969             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               TGTGGATACCTTACTGACGTAGGGATATAAAGGCCAATATATGTCAGAAAATTGGCTGAAGCAGCCGTTGTTTATACAATCTTTTGCTCCTACTTCCCTTGTACATGCATCAAAGTTGACAGACTCTCCCAAGATATTCCTGATTGACGATTTCTCAGTGAGAACACAAGATACAAACCAGTCATACTGGGACATCACTTCTGATGACTACCTAGCATATATTAGTAACTATGTTGTTGGCCTTGGTCCA TGGAAAGATACGGTTGTTCCAGC AGCCAAAAACTATACGATGGCACCGACTGATCTTGTTGCAAGAGCACATGCT CATAATCTTCAGGTACACCCGTACACATACAGGAACGAGA ATCAATTCCTGCACCTCAACTTCCATCAGGACCCTTATGCTGAGTATGATTTCTGGATAAACA GCATGGGGGTCGATGGATTGTTCACTGATTTCACTGGATCCCTGCACCGTTACCAGGAACTGGTAGCTCCACATGCGAAGGATGAAACTGCAAACAGCCTCCTAGTAAAAAATGCTCAAATGATCTCCCAATATGAAGGTTTCTGATCATGTTTTCCATTTTTCCGTTAATCGACATGCTTATATACACGCATTAGTGATCAAGGGTGACCTTGAATGTTACAGAACAAAAAAAAA                                                                                                                                                           ]
[+] EMBL AU100753             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        TGCATCAAAGTTGACAGACTCTCCCAAGATATTCCTGATTGACGATTTCTCAGTGAGNACACAAGATACAANCCAGTCATACTGGGACATCACTTCTGATGACTACCTAGCATATATTAGTAACTATGTTGTTGGCCTTGGTCCA TGGAAAGATACGGTTGTTCCAGC AGCCAAAAACTATACGATGGCACCGACTGATCTTGTTGCAAGAGCACATGCT CATAATCTTCAGGTACACCCGTACACATACAGGAACGAGA ACCAATTCCTGCACCTCAACTTCCATCAGGACCCTTATGCTGAGTATGATTTCTGGATAAACA GCATGGGGGTCGATGGATTGTTCACTGATTTCACTGGATCCCTGCACCGTTACCAGGAACTGGTAGCTCCACATGCGAAGGATGAAACTGCAAACAGCCTCCTAGTAAAAATTGCTCAAATGATCTCCCAATATGAAGGTTTCTGATCATGTTTTCCATTTTTCCGTTAATCGACATGCTTATATACACGCATTAGTGATCAAGGGTGACCTTGAATGTTACAGAACAAAAAAAA                                                                                                                                                            ]
[+] EMBL BM418623             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               gaAACCCAAGATCCAAACCAGTCATACTGGGACATCACTTCTGATGACTACCTAGCATATATTAGTAACTATGTTGTTGGCCTTGGTCCACTGGAAAGATACGGTTGTTCCAGCAAGCC  AAACTATACGATGGCACCGACTGATCTTGTTGCAAGAGCACATGCT CATAATCTTCAGGTACACCCGTACACATACAGGAACGAGA ATCAATTCCTGCACCTCAACTTCCATCAGGACCCTTATGCTGAGTATGATTTCTGGATAAACA GCATGGGGGTCGATGGATTGTTCACTGATTTCACTGGATCCCTGCACCGTTACCAGGAACTGGTAGCTCCACATGCGAAGGATGAAACTGC AACAGCCTCCTAGTAAAAATTGCTCAAATGATCTCCC ATATGAAGGTTTCTGATCATGTTTTCCATTTTTCCGTTAATCGACATGCTTATATACACGCATTAGTGATCAAGGGTGACCTTGAATGTTACAGAACAAAAAAAA                                                                                                                                                            ]
[+] EMBL AU222483             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ATGTTGTTGGCCTTGGTCCA TGGAAAGATACGGTTGTTCCAGC AGCCAAAAACTATACGATGGCACCGACTGATCTTGTTGCAAGAGCACATGCT CATAATCTTCAGGTACACCCGTACACATACAGGAACGAGA ACCAATTCCTGCACCTCAACTTCCATCAGGACCCTTATGCTGAGTATGATTTCTGGATAAACA GCATGGGGGTCGATGGATTGTTCACTGATTTCACTGGATCCCTGCACCGTTACCAGGAACTGGTAGCTCCACATGCGAAGGATGAAACTGCAAACAGCCTCCTAGTAAAAATTGCTCAAATGATCTCCCAATATGAAGGTTTCTGATCATGTTTTCCATTTTTCCGTTAATCGACATGCTTATATACACGCATTAGTGATCAAGGGTGACCTTGAATGTTACAGAACAAAAA                                                                                                                                                               ]
[+] EMBL AU102174             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                CTTGGTCCA TGGAAAGATACGGTTGTTCCAGC AGCCAAAAACTATACGATGGCACCGACTGATCTTGTTGCAAGAGCACATGCT CATAATCTTCAGGTACACCCGTACACATACAGGAACGAGA ACCAATTCCTGCACCTCAACTTCCATCAGGACCCTTATGCTGAGTATGATTTCTGGATAAACA GCATGGGGGTCGATGGATTGTTCACTGATTTCACTGGATCCCTGCACCGTTACCAGGAACTGGTAGCTCCACATGCGAAGGATGAAACTGCAAACAGCCTCCTAGTAAAAATTGCTCAAATGATCTCCCAATATGAAGGTTTCTGATCATGTTTTCCATTTTTCCGTTAATCGACATGCTTATATACACGCATTAGTGATCAAGGGTGACCTTGAATGTTACAGAACAAAAA                                                                                                                                                               ]
[+] EMBL AU086017             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             GCACATGCTCCATAATCTTCAGGTACACCCGTACACATACAGGAACGAGANACCAATTCCTGCACCTCAACTTCCATCAGGACCCTTATGCTGAGTATGATTTCTGGATAAACANGCATGGGGGTCGATGGATTGTTCACTGATTTCACTGGATCCCTGCACCGTTACCAGGAACTGGTAGCTCCACATGCGAAGGATGAAACTGCAAACAGCCTCCTAGTAAAAATTGCTCAAATGATCTCCCAATATGAAGGTTTCTGATCATGTTTTCCATTTTTCCGTTAATCGACATGCTTATATACACGCATTAGTGATCAAGGGTGACCTTGAATGTTACAGAACAAA                                                                                                                                                                 ]
[-] EMBL CF280186             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     T CATAATCTTCAGGTACACCCGTACACATACAGGAACGAGA ACCAATTCCTGCACCTCAACTTCCATCAGGACCCTTATGCTGAGTATGATTTCTGGATAAACA GCATGGGGGTCGATGGATTGTTCACTGATTTCACTGGATCCCTGCACCGTTACCAGGAACTGGTAGCTCCACATGCGAAGGATGAAACTGCAAACAGCCTCCTAGTAAAAATTGCTCAAATGATCTCCCAATATGAAGGTTTCTGATCATGTTTTCCATTTTTCCGTTAATCGACATGCTTATATACACGCATTAGTGATCAAGGGTGACCTTGAATGTTACAGAACAAAAAA                                                                                                                                                              ]


>consensus_14869#0 AGCAGGAGTGGAGAGGAGAATCCGCCGCTGCGCCGTCTTCTTCTCCATTGAAGCCAAGCT CCCCCAGGCCTTCTCGTTCTCCCCCTCCTCCTCGAGCTCTCGCTGGTGCGGGGAGCGAAG TGGAGAGGAGAGGCCGAGAGGGACGAGAGATCGAGAGGGAGAGGGAGCACCGAAGCAGCG GGCGGCAGCATGCGGCCTTCGCTCCGTACTATCTATTTTCTTCTTTTGCTACTTCCACAT GTGGTTTTTTCTAGACCACTCTTTCCACTACCAAGCAAGAGTAATGGAATAGAGAAGAGA CCCTTACAAACTTTTCGACCATATAACATTGCTCACCGTGGCTCAAATGGGGAAATTCCT GAGGAAACAGCTGCTGCTTACCTGAGGGCTATTGAAGAAGGTGCGGATTTTATAGAAACG GACATCCTTGCTAGCAAAGATGGGGCCTTGATCTGCTTTCATGATGTAACACTGGATGCT ACAACTGACGTTGCCAGCCGCAAGGAGTTTTCCAATAGAAGAAGAACCTACGAGGTGGAA TGGTTCAACGCTACTGGCTGGTTTGTAGTGGACTTCACACTTGAGGAACTTAAAACACTG AAAGTCAATCAGCGATACCCATTCAGAGACCAACAATACAATGGCAAGTTTTCAATTATC ACATTTGAAGAATTCATTTCTATTGCCTTGGATGCAAGCAGAACTGTCGGAATATACCCA GAGATGAAAGATCCAGTTTTTATCAACAAGCATGTCAAGTGGGATGGTGGGAAGAAGTTT GAGGACAAATTTGTGGATACCTTACTGAAGTATGGATATAAAGGCCAATATATGTCAGAA AATTGGCTGAAGCAGCCGTTGTTTATACAATCTTTTGCTCCTACTTCCCTTGTACATGCA TCAAAGTTGACAGACTCTCCCAAGATATTCCTGATTGACGATTTCTCAGTGAGAACACAA GATACAAACCAGTCATACTGGGACATCACTTCTGATGACTACCTAGCATATATTAGTAAC TATGTTGTTGGCCTTGGTCCATGGAAAGATACGGTTGTTCCAGCAGCCAAAAACTATACG ATGGCACCGACTGATCTTGTTGCAAGAGCACATGCTCATAATCTTCAGGTACACCCGTAC ACATACAGGAACGAGAACCAATTCCTGCACCTCAACTTCCATCAGGACCCTTATGCTGAG TATGATTTCTGGATAAACAGCATGGGGGTCGATGGATTGTTCACTGATTTCACTGGATCC CTGCACCGTTACCAGGAACTGGTAGCTCCACATGCGAAGGATGAAACTGCAAACAGCCTC CTAGTAAAAATTGCTCAAATGATCTCCCAATATGAAGGTTTCTGATCATGTTTTCCATTT TTCCGTTAATCGACATGCTTATATACACGCATTAGTGATCAAGGGTGACCTTGAATGTTA CAGAACAAAAAAAAAAAGAAAAAAATACTTGTTTTCTGGTGGCTAGCAGTTAGAACGGAT TGTAGACACCTCTATAACTATAAATCCCTGAATTGCGGGGAGAAATTTCTACAGTTGTAA TAATTGTCTTTAAAACAGTTGTATCTGATTAGTTCCTTGAAACAAAGTTC



consensusID : consensus_14869#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 587
fasta sequence
                              [AAAGTTGACAGACTCTCCCAAGATATTCCTGATTGACGATTTCTCAGTGAGAACACAAGATACAAACCAGTCATACTGGGACATCACTTCTGATGACTACCTAGCATATATTAGTAACTATGTTGTTGGCCTTGGTCCATGGAAAGATACGGTTGTTCCAGCAGCCAAAAACTATACGATGGCACCGACTGATCTTGTTGCAAGAGCACATGCTCATAATCTTCAGGTACACCCGTACACATACAGGAACGAGAACCAATTCCTGCACCTCAACTTCCATCAGGACCCTTATGCTGAGTATGATTTCTGGATAAACAGCATGGGGGTCGATGGATTGTTCACTGATTTCACTGGATCCAAGCACAA--TACCAGGAACTGGTAGCTCCACATGCGAAGGATGAAACAAAAAACAGCCTCCTAGTAAAAATTGCTCAAATGATCTCCCAATATGAAGGTTTCTGATCATGTTTTCCATTTTTCCGTTAATCGACATGCTTATATACACGCATTAGTGATCAAGGGTGACCTTGAATGTTGCGTTTTAAAAAAAAAAAAAAAAAAAAAGTCATGCCGTTACGTAGCGTATC]

[-] EMBL CF280764             [AAAGTTGACAGACTCTCCCAAGATATTCCTGATTGACGATTTCTCAGTGAGAACACAAGATACAAACCAGTCATACTGGGACATCACTTCTGATGACTACCTAGCATATATTAGTAACTATGTTGTTGGCCTTGGTCCATGGAAAGATACGGTTGTTCCAGCAGCCAAAAACTATACGATGGCACCGACTGATCTTGTTGCAAGAGCACATGCTCATAATCTTCAGGTACACCCGTACACATACAGGAACGAGAACCAATTCCTGCACCTCAACTTCCATCAGGACCCTTATGCTGAGTATGATTTCTGGATAAACAGCATGGGGGTCGATGGATTGTTCACTGATTTCACTGGATCCAAGCACAA  TACCAGGAACTGGTAGCTCCACATGCGAAGGATGAAACAAAAAACAGCCTCCTAGTAAAAATTGCTCAAATGATCTCCCAATATGAAGGTTTCTGATCATGTTTTCCATTTTTCCGTTAATCGACATGCTTATATACACGCATTAGTGATCAAGGGTGACCTTGAATGTTGCGTTTTAAAAAAAAAAAAAAAAAAAAAGTCATGCCGTTACGTAGCGTATC]
[-] EMBL CF280393             [                                                                                                                                                AGATACGGTTGTTCCAGCAGCCAAAAACTATACGATGGCACCGACTGATCTTGTTGCAAGAGCACATGCTCATAATCTTCAGGTACACCCGTACACATACAGGAACGAGAACCAATTCCTGCACCTCAACTTCCATCAGGACCCTTATGCTGAGTATGATTTCTGGATAAACAGCATGGGGGTCGATGGATTGTTCACTGATTTCACTGGATCAAAAAACAAGTTACCAGGAACTGGTAGCTCCACATGCGAAGGATGAAAAAAAAAACAGCCTCCTAGTAAAAATTGCTCAAATGATCTCCCAATATGAAGGTTTCTGATCATGTTTTCCATTTTTCCGTTAATCGACATGCTTATATACACGCATTAGTGATCAAGGGTG                                                               ]


>consensus_14869#1 AAAGTTGACAGACTCTCCCAAGATATTCCTGATTGACGATTTCTCAGTGAGAACACAAGA TACAAACCAGTCATACTGGGACATCACTTCTGATGACTACCTAGCATATATTAGTAACTA TGTTGTTGGCCTTGGTCCATGGAAAGATACGGTTGTTCCAGCAGCCAAAAACTATACGAT GGCACCGACTGATCTTGTTGCAAGAGCACATGCTCATAATCTTCAGGTACACCCGTACAC ATACAGGAACGAGAACCAATTCCTGCACCTCAACTTCCATCAGGACCCTTATGCTGAGTA TGATTTCTGGATAAACAGCATGGGGGTCGATGGATTGTTCACTGATTTCACTGGATCCAA GCACAATACCAGGAACTGGTAGCTCCACATGCGAAGGATGAAACAAAAAACAGCCTCCTA GTAAAAATTGCTCAAATGATCTCCCAATATGAAGGTTTCTGATCATGTTTTCCATTTTTC CGTTAATCGACATGCTTATATACACGCATTAGTGATCAAGGGTGACCTTGAATGTTGCGT TTTAAAAAAAAAAAAAAAAAAAAAGTCATGCCGTTACGTAGCGTATC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_14869#0      AGCAGGAGTGGAGAGGAGAATCCGCCGCTGCGCCGTCTTCTTCTCCATTGAAGCCAAGCT 60
consensus_14869#1      ------------------------------------------------------------
                                                                                   

consensus_14869#0      CCCCCAGGCCTTCTCGTTCTCCCCCTCCTCCTCGAGCTCTCGCTGGTGCGGGGAGCGAAG 120
consensus_14869#1      ------------------------------------------------------------
                                                                                   

consensus_14869#0      TGGAGAGGAGAGGCCGAGAGGGACGAGAGATCGAGAGGGAGAGGGAGCACCGAAGCAGCG 180
consensus_14869#1      ------------------------------------------------------------
                                                                                   

consensus_14869#0      GGCGGCAGCATGCGGCCTTCGCTCCGTACTATCTATTTTCTTCTTTTGCTACTTCCACAT 240
consensus_14869#1      ------------------------------------------------------------
                                                                                   

consensus_14869#0      GTGGTTTTTTCTAGACCACTCTTTCCACTACCAAGCAAGAGTAATGGAATAGAGAAGAGA 300
consensus_14869#1      ------------------------------------------------------------
                                                                                   

consensus_14869#0      CCCTTACAAACTTTTCGACCATATAACATTGCTCACCGTGGCTCAAATGGGGAAATTCCT 360
consensus_14869#1      ------------------------------------------------------------
                                                                                   

consensus_14869#0      GAGGAAACAGCTGCTGCTTACCTGAGGGCTATTGAAGAAGGTGCGGATTTTATAGAAACG 420
consensus_14869#1      ------------------------------------------------------------
                                                                                   

consensus_14869#0      GACATCCTTGCTAGCAAAGATGGGGCCTTGATCTGCTTTCATGATGTAACACTGGATGCT 480
consensus_14869#1      ------------------------------------------------------------
                                                                                   

consensus_14869#0      ACAACTGACGTTGCCAGCCGCAAGGAGTTTTCCAATAGAAGAAGAACCTACGAGGTGGAA 540
consensus_14869#1      ------------------------------------------------------------
                                                                                   

consensus_14869#0      TGGTTCAACGCTACTGGCTGGTTTGTAGTGGACTTCACACTTGAGGAACTTAAAACACTG 600
consensus_14869#1      ------------------------------------------------------------
                                                                                   

consensus_14869#0      AAAGTCAATCAGCGATACCCATTCAGAGACCAACAATACAATGGCAAGTTTTCAATTATC 660
consensus_14869#1      ------------------------------------------------------------
                                                                                   

consensus_14869#0      ACATTTGAAGAATTCATTTCTATTGCCTTGGATGCAAGCAGAACTGTCGGAATATACCCA 720
consensus_14869#1      ------------------------------------------------------------
                                                                                   

consensus_14869#0      GAGATGAAAGATCCAGTTTTTATCAACAAGCATGTCAAGTGGGATGGTGGGAAGAAGTTT 780
consensus_14869#1      ------------------------------------------------------------
                                                                                   

consensus_14869#0      GAGGACAAATTTGTGGATACCTTACTGAAGTATGGATATAAAGGCCAATATATGTCAGAA 840
consensus_14869#1      ------------------------------------------------------------
                                                                                   

consensus_14869#0      AATTGGCTGAAGCAGCCGTTGTTTATACAATCTTTTGCTCCTACTTCCCTTGTACATGCA 900
consensus_14869#1      ------------------------------------------------------------
                                                                                   

consensus_14869#0      TCAAAGTTGACAGACTCTCCCAAGATATTCCTGATTGACGATTTCTCAGTGAGAACACAA 960
consensus_14869#1      --AAAGTTGACAGACTCTCCCAAGATATTCCTGATTGACGATTTCTCAGTGAGAACACAA 58
                         **********************************************************

consensus_14869#0      GATACAAACCAGTCATACTGGGACATCACTTCTGATGACTACCTAGCATATATTAGTAAC 1020
consensus_14869#1      GATACAAACCAGTCATACTGGGACATCACTTCTGATGACTACCTAGCATATATTAGTAAC 118
                       ************************************************************

consensus_14869#0      TATGTTGTTGGCCTTGGTCCATGGAAAGATACGGTTGTTCCAGCAGCCAAAAACTATACG 1080
consensus_14869#1      TATGTTGTTGGCCTTGGTCCATGGAAAGATACGGTTGTTCCAGCAGCCAAAAACTATACG 178
                       ************************************************************

consensus_14869#0      ATGGCACCGACTGATCTTGTTGCAAGAGCACATGCTCATAATCTTCAGGTACACCCGTAC 1140
consensus_14869#1      ATGGCACCGACTGATCTTGTTGCAAGAGCACATGCTCATAATCTTCAGGTACACCCGTAC 238
                       ************************************************************

consensus_14869#0      ACATACAGGAACGAGAACCAATTCCTGCACCTCAACTTCCATCAGGACCCTTATGCTGAG 1200
consensus_14869#1      ACATACAGGAACGAGAACCAATTCCTGCACCTCAACTTCCATCAGGACCCTTATGCTGAG 298
                       ************************************************************

consensus_14869#0      TATGATTTCTGGATAAACAGCATGGGGGTCGATGGATTGTTCACTGATTTCACTGGATCC 1260
consensus_14869#1      TATGATTTCTGGATAAACAGCATGGGGGTCGATGGATTGTTCACTGATTTCACTGGATCC 358
                       ************************************************************

consensus_14869#0      CTGCACCGTTACCAGGAACTGGTAGCTCCACATGCGAAGGATGAAACTGCAAACAGCCTC 1320
consensus_14869#1      AAGCACAAT-ACCAGGAACTGGTAGCTCCACATGCGAAGGATGAAACAAAAAACAGCCTC 417
                         ****  * *************************************   **********

consensus_14869#0      CTAGTAAAAATTGCTCAAATGATCTCCCAATATGAAGGTTTCTGATCATGTTTTCCATTT 1380
consensus_14869#1      CTAGTAAAAATTGCTCAAATGATCTCCCAATATGAAGGTTTCTGATCATGTTTTCCATTT 477
                       ************************************************************

consensus_14869#0      TTCCGTTAATCGACATGCTTATATACACGCATTAGTGATCAAGGGTGACCTTGAATGTTA 1440
consensus_14869#1      TTCCGTTAATCGACATGCTTATATACACGCATTAGTGATCAAGGGTGACCTTGAATGTTG 537
                       *********************************************************** 

consensus_14869#0      CAGAACAAAAAAAAAAAGAAAAAAATACTTGTTTTCTGGTGGCTAGCAGTTAGAACGGAT 1500
consensus_14869#1      CGTTTTAAAAAAAAAAAAAAAAAAAAAGTCATG--CCGTTACGTAGCGTATC-------- 587
                       *     *********** ******* * *  *   * * *   ****   *         

consensus_14869#0      TGTAGACACCTCTATAACTATAAATCCCTGAATTGCGGGGAGAAATTTCTACAGTTGTAA 1560
consensus_14869#1      ------------------------------------------------------------
                                                                                   

consensus_14869#0      TAATTGTCTTTAAAACAGTTGTATCTGATTAGTTCCTTGAAACAAAGTTC 1610
consensus_14869#1      --------------------------------------------------
                                                                         




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)