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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14907#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 17 consensus length = 1237 fasta sequence
[CGAAAACACCGTGCAGCAGCGAAACAGCAGAAACCCGCGA-CGCAGAACGGAAAACCGAAGTCTCCTCGATGGACTCCTCCGCGGCGTCGGCGGCGGCTGCGGCGGCGGCGCCGGTGGTGCTGGTGACGAACGACGACGGCATCGACGCGCCGGGACTCCGCTTCCTCGTCGGCCAGCTCGTCGCCGCCCGCCGCTACCGCGTCCTCGTCTGCGCGCCCGACACAGACAGGTCAGGTGTTAGCCAC-TCCATCACATGGCGCCCT-GCACTCCGC-TGTAAACGAGTTGATATAGATGGTGCTACAGCATTTGCAGCCTCAGGGACTCC-TGCTGACTGTGCTTCTTTAGGCATATCTGGGAAGCTCTTTGATGG-TTTGGTTCCTGATCT-GGTAGTCAGTGGAATC-AATGTTGGCAAC-AATTG-TGGATGCCATGTTATCTATTC-TGGAACAGTTGGCGGTGCTAGGGAGGCATTCTTGTACGGGATTCCTTCATTAGCCATGTCATATGATTGGGTCGCAAGTCAGAGCAGTGTTAACGACCTCAAAGTAGCTGCAGAGGTTGTTATGCCTCTGATAAATAATGTGATGGCTGAGATAAAGAATGGGACATATCCTCAAGGATCATTC-TTG--AATAT--A-GATATACCAACTGATGCTGCACACCACAAGGGATACAAAATTACAAAGCAAGGAAGGTATATGG-CCA-GAA-TTGGTT--GGGAGCAAACAG-TTTATAAGAAGCCTGCGGTAGAAAGTTACCAGACAG-CAAACATGGATGTTGACAGTGAAAAGGACAGTGAAGTAGATACTTCAT-CAGAGAATGACCTATTGTTTAAAAGAGTG-CTTGTGAGGCGAAGTTATGATGAAGAGGAAGGGGATGATATCGACCACAAGTGCCTTGTAGATGGATATATTACTGTTACCCCTTTGGGAGCTCTATCCCG---CG---CA---G-AAG-CTG--ATGTCATACCATACTACAAAGCTTGCTTGTCACGTCTGTGATCAGGATACTTTTGTGGCCCACTAAACTGAAAAAGTTGGTGTCATGGTTGCAAGTTGCAAATAAAGTTGCATGAATTTCAGTTATTCTAGATGATTGTTACTGATGTATTGCCATATTATGTACTTCCGTGATTATTCAGAGCATATGTATCACATAGCTCTTACTATTTATAACTACAGTTCCACAATAATTCTTTGGTATTATATTTTTCTGAGACTTGTTGCATATAGAGCTATATCAATTACGTTTT]
[+] EMBL CF196246 [CGAAAACACCGTGCAGCAGCGAAACAGCAGAAACCCGCGAGCGCAGAACGGAAAACCGAAGTCTCCTCGATGGACTCCTCCGCGGCGTCGGCGGCGGCTGCGGCGGCGGCGCCGGTGGTGCTGGTGACGAACGACGACGGCATCGACGCGCCGGGACTCCGCTTCCTCGNNNNCCAGCTCGTCGCCGCCCGCCGCTACCGCGTCCTCGTCTGCGCGCCCG ]
[+] EMBL AU162321 [ TGCAGCAGCGAAACAGCAGAAACCCGCGAGCGCAGAACGGAAAACCGAAGTCTCCTCGATGGACTCCTCCGCGGCGTCGGCGGCGGCTGCGGCGGCGGCGCGGTTGGTGCTGGTGACGAACGACGACGGCATCGACGCGCCGGGACTCCGCTTCCTCGTCGGCCAGCTCGTCGCCGCCCGCCGCTACCGCGTCCTCGTCTGCGCGCCCGACACAGACAGGTCAGGTGTTAGCCACTTCCATCACATGGCGCCCTNGCACTCCGCTTGTAAACGAGTTGATATAGATGGTGCTACAGCATTTGCAGCCTCAGGGACTCCTTGCTGACTGTGCTTCTTTAGGCATATCTGGGAAGCTCTTTGATGGTTTTGGTTCCTGATCTGGGAAGTNAGTGGAt ]
[+] EMBL BP184971 [ aCGA GGCAGAACGGAAAACCGAAGTCTCCTCGATGGACTCCTCCGCGGCGTCGGCGGCGGCTGCGGCGGCGGCGCCGGTGGTGCTGGTGACGAACGACGACGGCATCGACGCGCCGGGACTCCGCTTCCTCGTCGGCCAGCTCGTCGCCGCCCGCCGCTACCGCGTCCTCGTCTGCGCGCCCGACACAGACAGGTCAGGTGTTAGCCAC TCCATCACATGGCGCCCT GCACTCCGC TGTAAACGAGTTGATATAGATGGTGCTACAGCATTTGCAGCCTCAGGGACTCC TGCTGACTGTGCTTCTTTAGGCATATCTGGGAAGCTCTTTGATGG TTTGGTTCCTGATCT GGTAGTCAGTGGAATC AATGTTGGCAAC AATTG TGGATGCCATGTTATCTATTC TGGAACAGTTGGCGGTGCTAGGGAGGCATTCTTGTACGGGATTCCTTCATTAGCCATGTCATATGATTGGGTCGCAAGTCAGAGCAGTGTTAACGACCTCAAAGTAGCTGCAGAGGTTGTTATGCCTCTGATAAATAATGTGATGGCTGAGATAAAGAATGGGACATATCCTCAAGGATCATTC TTG AATAT A GATATACCAACTGATGCTGCACACCACAAGGGATACAAAATT ]
[+] EMBL AK058694 [ CGCAGAACGGAAAACCGAAGTCTCCTCGATGGACTCCTCCGCGGCGTCGGCGGCGGCTGCGGCGGCGGCGCCGGTGGTGCTGGTGACGAACGACGACGGCATCGACGCGCCGGGACTCCGCTTCCTCGTCGGCCAGCTCGTCGCCGCCCGCCGCTACCGCGTCCTCGTCTGCGCGCCCGACACAGACAGGTCAGGTGTTAGCCAC TCCATCACATGGCGCCCT GCACTCCGC TGTAAACGAGTTGATATAGATGGTGCTACAGCATTTGCAGCCTCAGGGACTCC TGCTGACTGTGCTTCTTTAGGCATATCTGGGAAGCTCTTTGATGG TTTGGTTCCTGATCT GGTAGTCAGTGGAATC AATGTTGGCAAC AATTG TGGATGCCATGTTATCTATTC TGGAACAGTTGGCGGTGCTAGGGAGGCATTCTTGTACGGGATTCCTTCATTAGCCATGTCATATGATTGGGTCGCAAGTCAGAGCAGTGTTAACGACCTCAAAGTAGCTGCAGAGGTTGTTATGCCTCTGATAAATAATGTGATGGCTGAGATAAAGAATGGGACATATCCTCAAGGATCATTC TTG AATAT A GATATACCAACTGATGCTGCACACCACAAGGGATACAAAATTACAAAGCAAGGAAGGTATATGG CCA GAA TTGGTT GGGAGCAAACAG TTTATAAGAAGCCTGCGGTAGAAAGTTACCAGACAG CAAACATGGATGTTGACAGTGAAAAGGACAGTGAAGTAGATACTTCAT CAGAGAATGACCTATTGTTTAAAAGAGTG CTTGTGAGGCGAAGTTATGATGAAGAGGAAGGGGATGATATCGACCACAAGTGCCTTGTAGATGGATATATTACTGTTACCCCTTTGGGAGCTCTATCCCG CG CA G AAG CTG ATGTCATACCATACTACAAAGCTTGCTTGTCACGTCTGTGATCAGGATACTTTTGTGGCCCACTAAACTGAAAAAGTTGGTGTCATGGTTGCAAGTTGCAAATAAAGTTGCATGAATTTCAGTTATTCTAGATGATTGTTACTGATGTATTGCCATATTATGTACTTCCGTGATTATTCAGAGCATATGTATCACATAGCTCTTACTATTTATAACTACAGTTCCACAATAATTCTTTGGTATTATATTTTTCTGAGACTTGTTGCATATAGAGC ]
[+] EMBL CA753523 [ AAAACCGAAGTCTCCTCGATGGACTCCTCCGCGGCGTCGGCGGCGGCTGCGGCGGCGGCGCCGGTGGTGCTGGTGACGAACGACGACGGCATCGACGCGCCGGGACTCCGCTTCCTCGTCGGCCAGCTCGTCGCCGCCCGCCGCTACCGCGTCCTCGTCTGCGCGCCCGACACAGACATGTCAGGTGTTAGCCAC TCCATCACATGGCGCCCT GCACTCCGC TGTAAACGAGTTGATATAGATGGTGCTACAGCATTTGCAGCCTCAGGGACTCC TGCTGACTGTGCTTCTTTAGGCATATCTGGGAAGCTCTTTGATGG TTTGGTTCCTGATCT GGTAGTCAGTGGAATC AATGTTGGCAAC AATTG TGGATGCCATGTTATCTATTC TGGAACAGTTGGCGGTGCTAGGGAGGCATTCTTGTACGGGATTCCTTCATTAGCCATGTCATATGATTGGGTCGCAAGTCAGAGCAGTGTNAACGACCTCAAAGTAGCTGCAGAAGTTNGTATGCCTCTGATAAATANTGTGATGGCTGAGATAAAGAATGGGACATATTCTC AGGATCATNC TGG AATAT GATATA CAACTGATGCTGCACA CACAAGGGATACAAA TACAAA CAA GAAGGTta ]
[+] EMBL CB658852 [ AAAACCGAAGTCTCCTCGATGGACTCCTCCGCGGCGTCGGCGGCGGCTGCGGCGGCGGCGCCGGTGGTGCTGGTGACGAACGACGACGGCATCGACGCGCCGGGACTCCGCTTCCTCGTCGGCCAGCTCGTCGCCGCCCGCCGCTACCGCGTCCTCGTCTGCGCGCCCGACACAGACAGGTCAGGTGTTAGCCAC TCCATCACATGGCGCCCT GCACTCCGC TGTAAACGAGTTGATATAGATGGTGCTACAGCATTTGCAGCCTCAGGGACTCC TGCTGACTGTGCTTCTTTAGGCATATCTGGGAAGCTCTTTGATGG TTTGGTTCCTGATCT GGTAGTCAGTGGAATC AATGTTGGCAAC AATTG TGGATGCCATGTTATCTATTC TGGAACAGTTGGCGGTGCTAGGGAGGCATTCTTGTACGGGATTCCTTCATTAGCCATGTCATATGATTGGGTCGCAAGTCAGAGCAGTGTTAACGACCTCAAAGTAGCTGCAGAGGTTGTTATGCCTCTGATAAATAATGTGATGGCTGAGATAAAGAATGGGACATATCCTCAAGGATCATTC TTG AATAT A GATATACCAACTGATGCTGCACACCACAAGGGATACAAAATTACAAAGCAAGGAAGGTATATGG CCA GAA TTGGTT GGGAGCAAACAG TTTATAAGAAGCCTGCGGTAGANAGTTACCAGACAG CAAACATGGATGTTGACAGTGAAAAGGACAGTGAAGTAGATACTTCAT CAGAGAAT ]
[+] EMBL AU165332 [ GAAGTCTCCTCGATGGACTCCTCCGCGGCGTCGGCGGCGGCTGCGGCGGCGGCGCC GTGGTGCTGGTAACGAACGACGACGGCATCNACGCGCCGGGACTCCGCTTCCTCGTCGGCCAGCTCGTCGCCGCCCGCCGCTACCGCTTCCTCGTTTGCNCGCCCNACACAGACAGGTCAGGTGTTAGCCAC TCCATCACATGGCGCCCT GCACTCCGC TGTAAACGAGTTGATATAGATGGTGCTACAGCATTTGCAGCCTCAGGGACTCC TGCTGACTGTGCTTCTTTAGGCATATCTGGGAAGCTCTTTAATGG TTTGGTTCCTGATCT GGTAGTNAGTGGAATCAAATGTTTGGAACAAATTGTTGGATGCCATGTAATCTATTCTTGGAACAGTTGGCGGTGCTAGGGAGGAATTCTTTTACGGGATTCC TNAATAG CATG ]
[+] EMBL CB655929 [ AAGTCTCCTCGATGGACTCCTCCGCGGCGTCGGCGGCGGCTGCGGCGGCGGCGCCGGTGGTGCTGGTGACGAACGACGACGGCATCGACGCGCCGGGACTCCGCTTCCTCGTCGGCCAGCTCGTCGCCGCCCGCCGCTACCGCGTCCTCGTCTGCGCGCCCGACACAGACAGGTCAGGTGTTAGCCAC TCCATCACATGGCGCCCT GCACTCCGC TGTAAACGAGTTGATATAGATGGTGCTACAGCATTTGCAGCCTCAGGGACTCC TGCTGACTGTGCTTCTTTAGGCATATCTGGGAAGCTCTTTGATGG TTTGGTTCCTGATCT GGTAGTCAGTGGAATC AATGTTGGCAAC AATTG TGGATGCCATGTTATCTATTC TGGAACAGTTGGCGGTGCTAGGGAGGCATTCTTGTACGGGATTCCTTCATTAGCCATGTCATATGATTGGGTCGCAAGTCAGAGCAGTGTTAACGACCTCAAAGTAGCTGCAGAGGTTGTTATGCCTCTGATAAATAATGTGATGGCTGAGATAAAGAATGGGACATATCCTCAAGGATCATTC TTG AATAT A GATATACCAACTGATGCTGCACACCACAAGGGATACAAAATTACAAAGCAAGGAAGGTATATGG CCA GAA TTGGTT GGGAGCAAACAG TTTATAAGAAGCCTGCGGTAGAAAGTTACCAGACAG CAAACATGGATGTTGACAGTGAAAAGGACAGTGAAGTAGATACTTCAT CAGAGAATGACCTATTGTTTAAAAGAGTG CTTGTGAGGCGAAGTTATGATGAAGAGGAA ]
[+] EMBL AK102805 [ CCTCCGCGGCGTCGGCGGCGGCTGCGGCGGCGGCGCCGGTGGTGCTGGTGACGAACGACGACGGCATCGACGCGCCGGGACTCCGCTTCCTCGTCGGCCAGCTCGTCGCCGCCCGCCGCTACCGCGTCCTCGTCTGCGCGCCCGACACAGACAGGTCAGGTGTTAGCCAC TCCATCACATGGCGCCCT GCACTCCGC TGTAAACGAGTTGATATAGATGGTGCTACAGCATTTGCAGCCTCAGGGACTCC TGCTGACTGTGCTTCTTTAGGCATATCTGGGAAGCTCTTTGATGG TTTGGTTCCTGATCT GGTAGTCAGTGGAATC AATGTTGGCAAC AATTG TAGATGCCATGTTATCTATTC TGGAACAGTTGGCGGTGCTAGGGAGGCATTCTTGTACGGGATTCCTTCATTAGCCATGTCATATGATTGGGTCGCAAGTCAGAGCAGTGTTAACGACCTCAAAGTAGCTGCAGAGGTTGTTATGCCTCTGATAAATAATGTGATGGCTGAGATAAAGAATGGGACATATCCTCAAGGATCATTC TTG AATAT A GATATACCAACTGATGCTGCACACCACAAGGGATACAAAATTACAAAGCAAGGAAGGTATATGG CCA GAA TTGGTT GGGAGCAAACAG TTTATAAGAAGCCTGCGGTAGAAAGTTACCAGACAG CAAACATGGATGTTGACAGTGAAAAGGACAGTGAAGTAGATACTTCAT CAGAGAATGACCTATTGTTTAAAAGAGTG CTTGTGAGGCGAAGTTATGATGAAGAGGAAGGGGATGATATCGACCACAAGTGCCTTGTAGATGGATATATTACTGTTACCCCTTTGGGAGCTCTATCCCG CG CA G AAG CTG ATGTCATACCATACTACAAAGCTTGCTTGTCACGTCTGTGATCAGGATACTTTTGTGGCCCACTAAACTGAAAAAGTTGGTGTCATGGTTGCAAGTTGCAAATAAAGTTGCATGAATTTCAGTTATTCTAGATGATTGTTACTGATGTATTGCCATATTATGTACTTCCGTGATTATTCAGAGCATATGTATCACATAGCTCTTACTATTTATAACTACAGTTCCACAATAATTCTTTGGTATTATATTTTTCTGA ]
[-] EMBL CB658853 [ AATTG TGGATGCCATGTTATCTATTC TGGAACAGTTGGCGGTGCTAGGGAGGCATTCTTGTACGGGATTCCTTCATTAGCCATGTCATATGATTGGGTCGCAAGTCAGAGCAGTGTTAACGACCTCAAAGTAGCTGCAGAGGTTGTTATGCCTCTGATAAATAATGTGATGGCTGAGATAAAGAATGGGACATATCCTCAAGGATCATTC TTG AATAT A GATATACCAACTGATGCTGCACACCACAAGGGATACAAAATTACAAAGCAAGGAAGGTATATGG CCA GAA TTGGTT GGGAGCAAACAG TTTATAAGAAGCCTGCGGTAGAAAGTTACCAGACAG CAAACATGGATGTTGACAGTGAAAAGGACAGTGAAGTAGATACTTCAT CAGAGAATGACCTATTGTTTAAAAGAGTG CTTGTGAGGCGAAGTTATGATGAAGAGGAAGGGGATGATATCGACCACAAGTGCCTTGTAGATGGATATATTACTGTTACCCCTTTGGGAGCTCTATCCCG CG CA G AAG CTG ATGTCATACCATACTACAAAGCTTGCTTGTCACGTCTGTGATCAGGATACTTTTGTGGCCCACTAAACTGAAAAAGTTGGTGTCATGGTTGCAAGTTGCAAATAAAGTTGCATGAATTTCAGTTATTCTAGATGATTGTTACTGATGTATTGCCATATTATGTACTTCCGTGATTATTCAGAGCATATGTATCACATAGCTCTTACTATTTATAACTACAGTTCCACAATAATTCTTTGGTATTATATTTTTCTGAGACGTGTTGCATATAGAGCTATATCAATTACGTTTT]
[-] EMBL CB655930 [ ATCTATTC TGGAACAGTTGGCGGTGCTAGGGAGGCATTCTTGTACGGGATTCCTTCATTAGCCATGTCATATGATTGGGTCGCAAGTCAGAGCAGTGTTAACGACCTCAAAGTAGCTGCAGAGGTTGTTATGCCTCTGATAAATAATGTGATGGCTGAGATAAAGAATGGGACATATCCTCAAGGATCATTC TTG AATAT A GATATACCAACTGATGCTGCACACCACAAGGGATACAAAATTACAAAGCAAGGAAGGTATATGG CCA GAA TTGGTT GGGAGCAAACAG TTTATAAGAAGCCTGCGGTAGAAAGTTACCAGACAG CAAACATGGATGTTGACAGTGAAAAGGACAGTGAAGTAGATACTTCAT CAGAGAATGACCTATTGTTTAAAAGAGTG CTTGTGAGGCGAAGTTATGATGAAGAGGAAGGGGATGATATCGACCACAAGTGCCTTGTAGATGGATATATTACTGTTACCCCTTTGGGAGCTCTATCCCG CG CA G AAG CTG ATGTCATACCATACTACAAAGCTTGCTTGTCACGTCTGTGATCAGGATACTTTTGTGGCCCACTAAACTGAAAAAGTTGGTGTCATGGTTGCAAGTTGCAAATAAAGTTGCATGAATTTCAGTTATTCTAGATGATTGTTACTGATGTATTGCCATATTATGTACTTCCGTGATTATTCAGAGCATATGTATCACATAGCTCTTACTATTTAT ]
[+] EMBL AU030916 [ AGNATGGGACATATCCTCAAGGATCATTC TTG NATAT A GATATACCAACTGATGCTGCACNCCACAAGGGATNCAAAATTACAAAGCAAGGAAGGTATATGG CCA GAA TTGGTT GGGAGCAAACAG TTTATAAGAAG CTGCGGTAGAAAGTTACCAGACAG CAAACATGGATGTTGACAGTGAAAAGGACAGTGAAGTAGATACTTCATCCAGAGAATGACCTATTGTTTAAAAGAGTG CTTGTGAGGCGAAGTTATGATGAAGAGGAAGGGGATGATATCGACCACAAGTGCCTTGTAGATGGATATATTACTGTTACCCCTTTGGGAGCTCTATCCCG CG CA G AAG CTG ATGTCATACCATACTACAAAGCTTGCTTGTCACGTCTGTGATCAGGATACTTTTGTGGCCCACTAAACTGAAAAAGTTGGTGTCATGGTTGCAAGTTGCAAATAAAGTTGCATGAATTTCAGTTATTCTAGATGATTGTTACTGATGTATTGCCATATTATGTACTTCCGTGATTATTCAGAGCATATGTATCACATAGCTCTTACTATTTATAACTACAGTTCCACAATAATTCTTTGGTATTAaaaaa ]
[+] EMBL BI808425 [ caatTTCTTTGAAAATATTAAGGATATCCC CTGATGCTGCACACCACAAGGGATAC AAATTAC AAGCAAGGAAGGTATATGG CCA GAA TTGGTT GGGAGC AACAG TTTATAAGAAGCCTGCGGTAGAAAGTTACCAGACAG CAAACATGGATGTTGACAGTGAAAAGGACAGTGAAGTAGATACTTCAT CAGAGAATGACCTATTGTTTAAAAGAGTG CTTGTGAGGCGAAGTTATGATGAAGAGGAAGGGGATGATATCGACCACAAGTGCCTTGTAGATGGATATATTACTGTTACCCCTTTGGGAGCTCTATCCCG CG CA G AAG CTG ATGTCATACCATACTACAAAGCTTGCTTGTCAC GTGATCAGGATACTTTTGTGGCCCACTAAACTGAAAAAGTTGGTGTCATGGTTGCAAGTTGCAAATAAAGTTGCATGAATTTCAGTCATTCTAGATGATTGTTACTGATGTATTGCCATATTATGTACTTCCGTGATTATTCAGAGCATATGTATCACATAGCTCTTACTATTTATAACTACAGTTCCACAATAAaaaa ]
[+] EMBL BM038595 [ taATATGGCCCAGGAATTTGGTTTGGGGACCAAACAGTTTTATAAGAAGCCT CGGTAGAAAGTTACCAGACAGCCTAACATGGATGTTGACAGTGAAAAGGACAGTGAAGTAGATACTTCAT CAGAGAATGACCTATTGTTTAAAAGAGTGTCTTGTGAGGCGAAGTTATGATGAAGAGGAAGGGGATGATATCGACCACAAGTGCCTTGTAGATGGATATATTACTGTTACCCCTTTGGGAGCTCTATCCCG CG CA G AAG CTG ATGTCATACCATACTACAAAGCTTGCTTGTCACGTCTGTGATCAGGATACTTTTGTGGCCCACTAAACTGAAAAAGTTGGTGTCATGGTTGCAAGTTGCAAATAAAGTTGCATGAATTTCAGTCATTCTAGATGATTGTTACTGATGTATTGCCATATTATGTACTTCCGTGATTATTCAGAGCATATGTATCACATAGCTCTTACTATTTATAAaaa ]
[+] EMBL C98512 [ TGGTT GGGAGCAAACAG TTTATAAGAANCCTGCGGTAGAAAGTTNCCAGACAG CAAACATGGATGTTGACAGTGAAAAGGACAGTGAAGTAGATACTTCAT CAGAGAATGACCTATTGTTTAAAAGAGTG CTTGTGAGGCGAAGTTATGATGAAGAGGAAGGGGATGATATCGACCACAAGTGCCTTGTAGATGGATATATTACTGTTACCCCTTTGGGAGCTCTATCCCG CG CA G AAG CTG ATGTCATACCATACTACAAAGCTTGCTTGTCACGTCTGTGATCAGGATACTTTTGTGGCCCACTAAACTGAAAAAGTTGGTGTCATGGTTGCAAGTTGCAAATAAAGTTGCATGAATTTCAGTTATTCTAGATGATTGTTACTGATGTATTGCCATATTATGTACTTCCGTGATTATTCAGAGCATATGTATCACATAGCTCTTACTATTTATAACTACAG TCCACAAAAA ]
[+] EMBL BI808426 [ AGAAGCCTGCGGTAGAAAGTTACCAGACAG CAAACATGGATGTTGACAGTGAAAAGGACAGTGAAGTAGATACTTCAT CAGAGAATGACCTATTGTTTAAAAGAGTG CTTGTGAGGCGAAGTTATGATGAAGAGGAAGGGGATGATATCGACCACAAGTGCCTTGTAGATGGATATATTACTGTTACCCCTTTGGGAGCTCTATCCCGGCCCGGCCCAAAGGAAAGCCTGGAATGTCATACCATACTACAAAGCTTGCTTGTCAC GTGATCAGGATACTTTTGTGGCCCACTAAACTGAAAAAGTTGGTGTCATGGTTGCAAGTTGCAAATAAAGTTGCATGAATTTCAGTCATTCTAGATGATTGTTACTGATGTATTGCCATATTATGTACTTCCGTGATTATTCAGAGCATATGTATCACATAGCTCTTACTATTTATAACTACAGTTCCACAATAAaaaa ]
[+] EMBL CB683176 [ AAGAGGAAGGGGATGATATCGACCACAAGTGCCTTGTAGATGGATATATTACTGTTACCCCTTTGGGAGCTCTATCCCG CG CA G AAG CTG ATGTCATACCATACTACAAAGCTTGCTTGTCACGTCTGTGATCAGGATACTTTTGTGGCCCACTAAACTGAAAAAGTTGGTGTCATGGTTGCAAGTTGCAAATAAAGTTGCATGAATTTCAGTTATTCTAGATGATTGTTACTGATGTATTGCCATATTATGTACTTCCGTGATTATTCAGAGCATATGTATCACATAGCTCTTACTATTTATAACTACAGTTCCACAATAATTCTTTGG ]
consensusID : consensus_14907#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 343 fasta sequence
[TTCGSGGCVGGBTTGAAGTAGATACTTCATCAGAGAATGACCTATTGTTTAAAAGAGTGCTTGTGAGGCGAAGTTATGATGAAGAGGAAGGGGATGATATCGACCACAAGTGCCTTGTAGATGGATATATTACTGTTACCCCTTTGGGAGCTCTATCCCGCGCRGAAGCTGATGTCATACCATACTACCAAAGCTTGCYTGTCACSTCTGTKDATCMAGGRTACYTTTGKKGGCCMCYWAACYKGAAAAGGTTGGGKTAADGGTTGCMARGTKSMAATTARGGTGBSCGKAATTCACGGTATTCYMGARWGRATGKWMCGAWGTDATTKSSMYAWTTATGTRC]
[+] EMBL AA752671 [TTCGSGGCVGGBTTGAAGTAGATACTTCATCAGAGAATGACCTATTGTTTAAAAGAGTGCTTGTGAGGCGAAGTTATGATGAAGAGGAAGGGGATGATATCGACCACAAGTGCCTTGTAGATGGATATATTACTGTTACCCCTTTGGGAGCTCTATCCCGCGCRGAAGCTGATGTCATACCATACTACCAAAGCTTGCYTGTCACSTCTGTKDATCMAGGRTACYTTTGKKGGCCMCYWAACYKGAAAAGGTTGGGKTAADGGTTGCMARGTKSMAATTARGGTGBSCGKAATTCACGGTATTCYMGARWGRATGKWMCGAWGTDATTKSSMYAWTTATGTRC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14907#0 CGAAAACACCGTGCAGCAGCGAAACAGCAGAAACCCGCGACGCAGAACGGAAAACCGAAG 60
consensus_14907#1 ------------------------------------------------------------
consensus_14907#0 TCTCCTCGATGGACTCCTCCGCGGCGTCGGCGGCGGCTGCGGCGGCGGCGCCGGTGGTGC 120
consensus_14907#1 ------------------------------------------------------------
consensus_14907#0 TGGTGACGAACGACGACGGCATCGACGCGCCGGGACTCCGCTTCCTCGTCGGCCAGCTCG 180
consensus_14907#1 ------------------------------------------------------------
consensus_14907#0 TCGCCGCCCGCCGCTACCGCGTCCTCGTCTGCGCGCCCGACACAGACAGGTCAGGTGTTA 240
consensus_14907#1 ------------------------------------------------------------
consensus_14907#0 GCCACTCCATCACATGGCGCCCTGCACTCCGCTGTAAACGAGTTGATATAGATGGTGCTA 300
consensus_14907#1 ------------------------------------------------------------
consensus_14907#0 CAGCATTTGCAGCCTCAGGGACTCCTGCTGACTGTGCTTCTTTAGGCATATCTGGGAAGC 360
consensus_14907#1 ------------------------------------------------------------
consensus_14907#0 TCTTTGATGGTTTGGTTCCTGATCTGGTAGTCAGTGGAATCAATGTTGGCAACAATTGTG 420
consensus_14907#1 ------------------------------------------------------------
consensus_14907#0 GATGCCATGTTATCTATTCTGGAACAGTTGGCGGTGCTAGGGAGGCATTCTTGTACGGGA 480
consensus_14907#1 ------------------------------------------------------------
consensus_14907#0 TTCCTTCATTAGCCATGTCATATGATTGGGTCGCAAGTCAGAGCAGTGTTAACGACCTCA 540
consensus_14907#1 ------------------------------------------------------------
consensus_14907#0 AAGTAGCTGCAGAGGTTGTTATGCCTCTGATAAATAATGTGATGGCTGAGATAAAGAATG 600
consensus_14907#1 ------------------------------------------------------------
consensus_14907#0 GGACATATCCTCAAGGATCATTCTTGAATATAGATATACCAACTGATGCTGCACACCACA 660
consensus_14907#1 ------------------------------------------------------------
consensus_14907#0 AGGGATACAAAATTACAAAGCAAGGAAGGTATATGGCCAGAATTGGTTGGGAGCAAACAG 720
consensus_14907#1 ------------------------------------------------------------
consensus_14907#0 TTTATAAGAAGCCTGCGGTAGAAAGTTACCAGACAGCAAACATGGATGTTGACAGTGAAA 780
consensus_14907#1 -----------------------------------------------------TTCGSGG 7
*
consensus_14907#0 AGGACAGTGAAGTAGATACTTCATCAGAGAATGACCTATTGTTTAAAAGAGTGCTTGTGA 840
consensus_14907#1 CVGGBT-TGAAGTAGATACTTCATCAGAGAATGACCTATTGTTTAAAAGAGTGCTTGTGA 66
* *****************************************************
consensus_14907#0 GGCGAAGTTATGATGAAGAGGAAGGGGATGATATCGACCACAAGTGCCTTGTAGATGGAT 900
consensus_14907#1 GGCGAAGTTATGATGAAGAGGAAGGGGATGATATCGACCACAAGTGCCTTGTAGATGGAT 126
************************************************************
consensus_14907#0 ATATTACTGTTACCCCTTTGGGAGCTCTATCCCGCGCAGAAGCTGATGTCATACCATACT 960
consensus_14907#1 ATATTACTGTTACCCCTTTGGGAGCTCTATCCCGCGCRGAAGCTGATGTCATACCATACT 186
************************************* **********************
consensus_14907#0 AC-AAAGCTTGCTTGTCACGTCTGTGA--TCAGGATACTTTTGTGGCCCACTAAACTGAA 1017
consensus_14907#1 ACCAAAGCTTGCYTGTCACSTCTGTKDATCMAGGRTACYTTTGKKGGCCMCYWAACYKGA 246
** ********* ****** ***** *** *** **** * ** * *** *
consensus_14907#0 AAAG-TTGGTGTCATGGTTGCAAGTTGCAAATAAAGTTGCATGAATTTCA-GTTATTCTA 1075
consensus_14907#1 AAAGGTTGGGKTAADGGTTGCMARGTKSMAATTARGGTGBSCGKAATTCACGGTATTCYM 306
**** **** * * ****** * * *** * * ** * * **** * *****
consensus_14907#0 GA-TGATTGTTACTGATGTATTGCCATATT-ATGTACTTCCGTGATTATTCAGAGCATAT 1133
consensus_14907#1 GARWGRATGKWMCGAWGTDATTKSSMYAWTTATGTRC----------------------- 343
** * ** * *** * * **** *
consensus_14907#0 GTATCACATAGCTCTTACTATTTATAACTACAGTTCCACAATAATTCTTTGGTATTATAT 1193
consensus_14907#1 ------------------------------------------------------------
consensus_14907#0 TTTTCTGAGACTTGTTGCATATAGAGCTATATCAATTACGTTTT 1237
consensus_14907#1 --------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||