These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14917#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1001 fasta sequence [GAGCCGCCGCCTCCCGTACTCCCTTGCGAGCTGGGGTTTTAGCGGCGGCGGCGAGAGAGGAGGAGGAGGAGGAGAGGGGAAGATGAGCCGGAGCCTGGGGATCCCGGTGAAGCTGCTGCACGAGGCGGCGGGGCACGTGGTGACGGTGGAGCTCAAGACCGGCGAGGTGTACCGCGGCGCCATGGTGGAGTGCGAGGACAACTGGAACTGCCAGCTCGACAACATCACCTTCACCGCCAAGGATGGCAAGGTGTTGCAGCTGGAGCACGTCTTCATCAGAGGAAGCAGAGTGAGATTTATGATTATACCGGATATGCTCAAGAACGCACCCATGTTCAAGCGCCTGGAAGCAAGGATTAGGGGCAAAGGATCAGCTCTTGGAGTCGGGCGTGGCCGCGCGGTTGCAATGCGTGCCCCGTCTGCTGCTGGTCGTTGTGTTGGTCCTGTTGCACGGGGTTTTGCACCTCCCTTTATGAAATTCAATGCCTGTACTTATTATCTTGTCTTAAGTCGTTGATGCTTTAATGTGAAATTCACTGCTTATAATTTTTACACTCCCCGCCGTTGCTTTTTTTCTGTACTCTCTCGTTCCGCGGCTGATTCGTAACTCTTTTCCTAATTTAATTTTACCTCTCTTCTCTTACATTTTTTTACTCCTCTGTTGTTGTTTGCACGGTCGGTCCAACTTCCATCATCTATGCTTTTATTCCTATGTGTATTTCTTCTCCTCTCGTTGCCCCTCTTAATTTGTTTTTCTGATATCTATTCTATTTCTTTATGACTTTTTCCCATGTCTTCTTCCAATATAGCCTTTCATCTTAACTTTTTCCCTCATTGTCCTGTGTTTTTCACTCGTTCTCTTCTTGTAGGCTCTTGGCCCAAAGTGCTATCATATTTTACAGACGTATGCAGTGGTTCTTGTGTCACGTCTTTGTCTCGAGTAGTATAAATGTACTTATCATATACGAAGTTAGNTTGTGGATGTGAGCTTTATTCTCATA] [+] EMBL BE039814 [GAGCCGCCGCCTCCCGTACTCCCTTGCGAGCTGGGGTTTTAGCGGCGGCGGCGAGAGAGGAGGAGGAGGAGGAGAGGGGAAGATGAGCCGGAGCCTGGGGATCCCGGTGAAGCTGCTGCACGAGGCGGCGGGGCACGTGGTGACGGTGGAGCTCAAGACCGGCGAGGTGTACCGCGGCGCCATGGTGGAGTGCGAGGACAACTGGAACTGCCAGCTCGACAACATCACCTTCACCGCCAAGGATGGCAAGGTGTTGCAGCTGGAGCACGTCTTCATCAGAGGAAGCAGAGTGAGATTTATGATTATACCGGATATGCTCAAGAACGCACCCATGTTCAAGCGCCTGGAAGCAAGGATTAGGGGCAAAGGATCAGCTCTTGGAGTCGGGCGTGGCCGCGCGGTTGCAATGCGTGCCCCGTCTGCTGCTGGTCGTTGTGTTGGTCCTGTTGCACGGGGTTTTGCACCTCCCTTTATGAAATTCAATGCCTGTACTTATTATCTTGTCTTAAGTCGTTGATGCTTTAATGTGAAATTCACTGCTTATAATTTTTACACTCCCCGCCGTTGCTTTTTTTCTGTACTCTCTCGTTCCGCGGCTGATTCGTAACTCTTTTCCTAATTTAATTTTACCTCTCTTCTCTTACATTTTTTTACTCCTCTGTTGTTGTTTGCACGGTCGGTCCAACTTCCATCATCTATGCTTTTATTCCTATGTGTATTTCTTCTCCTCTCGTTGCCCCTCTTAATTTGTTTTTCTGATATCTATTCTATTTCTTTATGACTTTTTCCCATGTCTTCTTCCAATATAGCCTTTCATCTTAACTTTTTCCCTCATTGTCCTGTGTTTTTCACTCGTTCTCTTCTTGTAGGCTCTTGGCCCAAAGTGCTATCATATTTTACAGACGTATGCAGTGGTTCTTGTGTCACGTCTTTGTCTCGAGTAGTATAAATGTACTTATCATATACGAAGTTAGNTTGTGGATGTGAGCTTTATTCTCATA] consensusID : consensus_14917#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 915 fasta sequence [TCTCTTTTTTTTCCCTGTCCGCTTTGCTTCGCCTGAGCCCTGAGCCGCCGCCTCCCGTACTCCCTTGCGAGCTGGGGTTTTAGCGGCGGCGGCGAGAGGAGAGGAGGAGGAGGAGAGGGGAAGATGAGCCGGAGCCTGGGGATCCCGGTGAAGCTGCTGCACGAGGCGGCGGGGCACGTGGTGACGGTGGAGCTCAAGACCGGCGAGGTGTACCGCGGCGCCATGGTGGAGTGCGAGGACAACTGGAACTGCCA-GCTCGACAACATCACCTTCACCGCCAAGGATGGCAAGG-TGTCGCAGCTGGAGCACGTCTTCATCAGAGGAAGCAGAGTGAGATTTATGATTATACCGGATA-TGCTCAAGAACGCACCCA-TGTTCAAG-CGCCTGGAA-GCAAGGATTAGGGGCAAAGGATCAGCTATTGGA-GT-CGG-GCGTGGCCGTGCGGTTGCAATGCGTGCCCGGGCTGCTGCTGGTCGTGGTGGTGGTCCTGTTGGACGGGGTGGT-GCACCTCCGGTGAGGAGATAGATTGTCTGTCATCTATTATCTGCCTGAGGAAGTTGATGCCTTAATTTGAAAACATTGCTTGAGAATTAAACAGCCAGTGTGCATCTTGTCTGATCAATCCGCTTAAAGGAGGATGCATGCATGTTGGTGGCGTCGATTTCATGTATTTTTAATGTTAGATATGGTAGGTTGAGTATGATATTTCAAAGGTAGAAACATTGTGTTCGTTAACCTGATTTGAATGACAAGACCAGTTTCCCCTGTCATTGAGCGAATTTCCTTTTGTATCTACCAGTTTAGTGGCCGTTTGGAACGCAGTGATTCTTAAAATTCATGTGCTCCAAAGGCCTAGTGGTTATCTGGCAACTTCCTGAATCGGATGCTTCTTATAAGTTATTATAACGCACTTTGTAT] [+] EMBL AK061178 [TCTCTTTTTTTTCCCTGTCCGCTTTGCTTCGCCTGAGCCCTGAGCCGCCGCCTCCCGTACTCCCTTGCGAGCTGGGGTTTTAGCGGCGGCGGCGAGAGGAGAGGAGGAGGAGGAGAGGGGAAGATGAGCCGGAGCCTGGGGATCCCGGTGAAGCTGCTGCACGAGGCGGCGGGGCACGTGGTGACGGTGGAGCTCAAGACCGGCGAGGTGTACCGCGGCGCCATGGTGGAGTGCGAGGACAACTGGAACTGCCA GCTCGACAACATCACCTTCACCGCCAAGGATGGCAAGG TGTCGCAGCTGGAGCACGTCTTCATCAGAGGAAGCAGAGTGAGATTTATGATTATACCGGATA TGCTCAAGAACGCACCCA TGTTCAAG CGCCTGGAA GCAAGGATTAGGGGCAAAGGATCAGCTATTGGA GT CGG GCGTGGCCGTGCGGTTGCAATGCGTGCCCGGGCTGCTGCTGGTCGTGGTGGTGGTCCTGTTGGACGGGGTGGT GCACCTCCGGTGAGGAGATAGATTGTCTGTCATCTATTATCTGCCTGAGGAAGTTGATGCCTTAATTTGAAAACATTGCTTGAGAATTAAACAGCCAGTGTGCATCTTGTCTGATCAATCCGCTTAAAGGAGGATGCATGCATGTTGGTGGCGTCGATTTCATGTATTTTTAATGTTAGATATGGTAGGTTGAGTATGATATTTCAAAGGTAGAAACATTGTGTTCGTTAACCTGATTTGAATGACAAGACCAGTTTCCCCTGTCATTGAGCGAATTTCCTTTTGTATCTACCAGTTTAGTGGCCGTTTGGAACGCAGTGATTCTTAAAATTCATGTGCTCCAAAGGCCTAGTGGTTATCTGGCAACTTCCTGAATCGGATGCTTCTTATAAGTTATTATAACGCAC ] [+] EMBL AK121552 [ TGCTTCGCCTGAGCCCTGAGCCGCCGCCTCCCGTACTCCCTTGCGAGCTGGGGTTTTAGCGGCGGCGGCGAGAGGAGAGGAGGAGGAGGAGAGGGGAAGATGAGCCGGAGCCTGGGGATCCCGGTGAAGCTGCTGCACGAGGCGGCGGGGCACGTGGTGACGGTGGAGCTCAAGACCGGCGAGGTGTACCGCGGCGCCATGGTGGAGTGCGAGGACAACTGGAACTGCCA GCTCGACAACATCACCTTCACCGCCAAGGATGGCAAGG TGTCGCAGCTGGAGCACGTCTTCATCAGAGGAAGCAGAGTGAGATTTATGATTATACCGGATA TGCTCAAGAACGCACCCA TGTTCAAG CGCCTGGAA GCAAGGATTAGGGGCAAAGGATCAGCTATTGGA GT CGG GCGTGGCCGTGCGGTTGCAATGCGTGCCCGGGCTGCTGCTGGTCGTGGTGGTGGTCCTGTTGGACGGGGTGGT GCACCTCCGGTGAGGAGATAGATTGTCTGTCATCTATTATCTGCCTGAGGAAGTTGATGCCTTAATTTGAAAACATTGCTTGAGAATTAAACAGCCAGTGTGCATCTTGTCTGATCAATCCGCTTAAAGGAGGATGCATGCATGTTGGTGGCGTCGATTTCATGTATTTTTAATGTTAGATATGGTAGGTTGAGTATGATATTTCAAAGGTAGAAACATTGTGTTCGTTAACCTGATTTGAATGACAAGACCAGTTTCCCCTGTCATTGAGCGAATTTCCTTTTGTATCTACCAGTTTAGTGGCCGTTTGGAACGCAGTGATTCTTAAAATTCATGTGCTCCAAAGGCCTAGTGGTTATCTGGCAACTTCCTGAATCGGATGCTTCTTATAAGTTATTATAACGCACTTTGTAT] [+] EMBL AK059292 [ GCTTCGCCTGAGCCCTGAGCCGCCGCCTCCCGTACTCCCTTGCGAGCTGGGGTTTTAGCGGCGGCGGCGAGAGGAGAGGAGGAGGAGGAGAGGGGAAGATGAGCCGGAGCCTGGGGATCCCGGTGAAGCTGCTGCACGAGGCGGCGGGGCACGTGGTGACGGTGGAGCTCAAGACCGGCGAGGTGTACCGCGGCGCCATGGTGGAGTGCGAGGACAACTGGAACTGCCA GCTCGACAACATCACCTTCACCGCCAAGGATGGCAAGG TGTCGCAGCTGGAGCACGTCTTCATCAGAGGAAGCAGAGTGAGATTTATGATTATACCGGATA TGCTCAAGAACGCACCCA TGTTCAAG CGCCTGGAA GCAAGGATTAGGGGCAAAGGATCAGCTATTGGA GT CGG GCGTGGCCGTGCGGTTGCAATGCGTGCCCGGGCTGCTGCTGGTCGTGGTGGTGGTCCTGTTGGACGGGGTGGT GCACCTCCGGTGAGGAGATAGATTGTCTGTCATCTATTATCTGCCTGAGGAAGTTGATGCCTTAATTTGAAAACATTGCTTGAGAATTAAACAGCCAGTGTGCATCTTGTCTGATCAATCCGCTTAAAGGAGGATGCATGCATGTTGGTGGCGTCGATTTCATGTATTTTTAATGTTAGATATGGTAGGTTGAGTATGATATTTCAAAGGTAGAAACATTGTGTTCGTTAACCTGATTTGAATGACAAGACCAGT ] [+] EMBL OSC27711 [ GCTGGGGTTTTAGCGGCGGCGGCGAGAGGAGAGGAGGAGGAGGAGAGGGGAAGATGAGCCGGAGCCTGGGGATCCCGGTGAAGCTGCTGCACGAGGCGGCGGGGCACGTGGTGACGGTGGAGCTCAAGACCGGCGAGGTGTACCGCGGCGCCATGGTGGAGTGCGAGGACAACTGGAACTGCCACGCTCGACAACATCACCTTCACCGCCAAGGATGGCAAGGTTGTCGCAGCTGNAGCACGTCTTCATCACAGGAAGCACAGTGAGATTTATGATTATACCGGATATTGNTCAAGAACGCACCCATTGTTCAAG CGNCTGGAACGCAACGATTANGGGGANANGNTCACCTATTGTANGT CGGTNCGTGnaccttg ] [+] EMBL AU031242 [ ccgGGATA TGCTCAAGAACGCACCCA TGTTCAAGCCGCCTGGAA GCAAGGATTAGGGGCAAAGGATCAGCTATTGGA GTCCGG GCGTGGCCGTGCGGTTGCAATGCGTGCCCGGGCTGCTGCTGGTCGTGGTGGTGGTCCTGTTGGACGGGGTGGTNGC CCTCCGGTGAGGAGATAGATTGTCTGTCATCTATTATCTGCCTGAGGAAGTTGATGCCTTAATTTGAAAACATTGCTTGAGAATTAAACAGCCAGTGTGCATCTTGTCTGATCAATCCGCTTAAAGGAGGATGCATGCATGTTGGTGGCGTCGATTTCATGTATTTTTAATGTTAGATATGGTAGGTTGAGTATGATATTTCAAAGGTAGAAACATTGTGTTCGTTAACCTGATTTGAATGACAAGACCAGTTTCCCCTGTCATTGAGCGAATTTCaaaaa ] consensusID : consensus_14917#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 707 fasta sequence [CCCCTCGCCTCCATCTCTCTCATCTGCCCTCCTCGACTCGACTCGACTCCCCTCCGCCGCCGCCGCCGCCATCTTCCTCCTCCACCAGACCACCACCACCACCAACAACAACTCGTCGTCGCGTCTGCCTAGCTAGGGTTTCCCTTCTCTACCCAACCCTAGGAGGAAGATGAGCCGCAGCCTTGGTATCCCAGTGAAGCTGCTGCACGAGGCGGCGGGGCACGTGGTGACCGTGGAGCTCAAGACCGGCGAGGTGTACCGCGGCTCCATGGTCGAGTGCGAGGACAACTGGAACTGCCAGCTCGACAACATCACCTTCACCGCCAAGGACGGCAAGGTCTCCCAGCTGGAGCACGTCTTCATCAGAGGAAGCAGGGTCAGGTTCATGATCATACCCGACATGCTCAAGAACGCCCCCATG-TTCAAGCGCCTCGAGGCTAGGATTAGGGGTAAAGGCTCAGCTATT-GGTGTTGGCCGTGGCCGTGCCGTTGCTATGCGTGCTCGGGCTGCTGCTGGTCGTGGTGGTGGTCCAGTTGGACGGGGTGGTGCACCTCCTGTGAGGCGGTAGATTTACGGGCAGCTCATTGTATGCTGTTATGATATGGAGGAAGTCCAGGGAGTCTTTGTGTTCATCATCCAAAACGTTGGTTCAGCAGCCAGAGTGCATGTGAGCTAAGCTTATGTACCTCCATCCAGTTTAGTTTGCC] [+] EMBL AK103689 [CCCCTCGCCTCCATCTCTCTCATCTGCCCTCCTCGACTCGACTCGACTCCCCTCCGCCGCCGCCGCCGCCATCTTCCTCCTCCACCAGACCACCACCACCACCAACAACAACTCGTCGTCGCGTCTGCCTAGCTAGGGTTTCCCTTCTCTACCCAACCCTAGGAGGAAGATGAGCCGCAGCCTTGGTATCCCAGTGAAGCTGCTGCACGAGGCGGCGGGGCACGTGGTGACCGTGGAGCTCAAGACCGGCGAGGTGTACCGCGGCTCCATGGTCGAGTGCGAGGACAACTGGAACTGCCAGCTCGACAACATCACCTTCACCGCCAAGGACGGCAAGGTCTCCCAGCTGGAGCACGTCTTCATCAGAGGAAGCAGGGTCAGGTTCATGATCATACCCGACATGCTCAAGAACGCCCCCATG TTCAAGCGCCTCGAGGCTAGGATTAGGGGTAAAGGCTCAGCTATT GGTGTTGGCCGTGGCCGTGCCGTTGCTATGCGTGCTCGGGCTGCTGCTGGTCGTGGTGGTGGTCCAGTTGGACGGGGTGGTGCACCTCCTGTGAGGCGGTAGATTTACGGGCAGCTCATTGTATGCTGTTATGATATGGAGGAAGTCCAGGGAGTCTTTGTGTTCATGATCCAAAACGTTGGTTCAGCAGCCAGAGTGCATGTGAGCTAAGCTTATGTACCTCCATCCAGTTTAGTTTGC ] [+] EMBL CF309010 [CCCCTCGCCTCCATCTCTCTCATCTGCCCTCCTCGACTCGACTCGACTCCCCTCCGCCGCCGCCGCCGCCATCTTCCTCCTCCACCAGACCACCACCACCACCAACAACAACTCGTCGTCGCGTCTGCCTAGCTAGGGTTTCCCTTCTCTACCCAACCCTAGGAGGAAGATGAGCCGCAGCCTTGGTATCCCAGTGAAGCTGCTGCACGAGGCGGCGGGGCACGTGGTGACCGTGGAGCTCAAGACCGGCGAGGTGTACCGCGGCTCCATGGTCGAGTGCGAGGACAACTGGAACTGCCAGCTCGACAACATCACCTTCACCGCCAAGGACGGCAAGGTCTCCCAGCTGGAGCACGTCTTCATCAGAGGAAGCAGGGTCAGGTTCATGATCATACCCGACATGCTCAAGAACGCCCCCATG TTCAAGCGCCTCGGGGCTAGGATTAGGGGTAAAGGCTCA CTATTGGGTGTTGGCCGTGGCCGTGCCGTTGCTATGCGTGCTCGGGCTGC ] [+] EMBL CF296983 [CCCCTCGCCTCCATCTCTCTCATCTGCCCTCCTCGACTCGACTCGACTCCCCTCCGCCGCCGCCGCCGCCATCTTCCTCCTCCACCAGACCACCACCACCACCAACAACAACTCGTCGTCGCGTCTGCCTAGCTAGGGTTTCCCTTCTCTACCCAACCCTAGGAGGAAGATGAGCCGCAGCCTTGGTATCCCAGTGAAGCTGCTGCACGAGGCGGCGGGGCACGTGGTGACCGTGGAGCTCAAGACCGGCGAGGTGTACCGCGGCTCCATGGTCGAGTGCGAGGACAACTGGAACTGCCAGCTCGACAACATCACCTTCACCGCCAAGGACGGCAAGGTCTCCCAGCTGGAGCACGTCTTCATCAGAGGAAGCAGGGTCAGGTTCATGATCATACCCGACATGCT ] [+] EMBL AK061193 [ CCCTCGCCTCCATCTCTCTCATCTGCCCTCCTCGACTCGACTCGACTCCCCTCCGCCGCCGCCGCCGCCATCTTCCTCCTCCACCAGACCACCACCACCACCAACAACAACTCGTCGTCGCGTCTGCCTAGCTAGGGTTTCCCTTCTCTACCCAACCCTAGGAGGAAGATGAGCCGCAGCCTTGGTATCCCAGTGAAGCTGCTGCACGAGGCGGCGGGGCACGTGGTGACCGTGGAGCTCAAGACCGGCGAGGTGTACCGCGGCTCCATGGTCGAGTGCGAGGACAACTGGAACTGCCAGCTCGACAACATCACCTTCACCGCCAAGGACGGCAAGGTCTCCCAGCTGGAGCACGTCTTCATCAGAGGAAGCAGGGTCAGGTTCATGATCATACCCGACATGCTCAAGAACGCCCCCATG TTCAAGCGCCTCGAGGCTAGGATTAGGGGTAAAGGCTCAGCTATT GGTGTTGGCCGTGGCCGTGCCGTTGCTATGCGTGCTCGGGCTGCTGCTGGTCGTGGTGGTGGTCCAGTTGGACGGGGTGGTGCACCTCCTGTGAGGCGGTAGATTTACGGGCAGCTCATTGTATGCTGTTATGATATGGAGGAAGTCCAGGGAGTCTTTGTGTTCATCATCCAAAACGTTGGTTCAGCAGCCAGAGTGCATGTGAGCTAAGCTTATGTACCTCCATCCAGTTTAGTTTGC ] [+] EMBL AK061558 [ CTGCCCTCCTCGACTCGACTCGACTCCCCTCCGCCGCCGCCGCCGCCATCTTCCTCCTCCACCAGACCACCACCACCACCAACAACAACTCGTCGTCGCGTCTGCCTAGCTAGGGTTTCCCTTCTCTACCCAACCCTAGGAGGAAGATGAGCCGCAGCCTTGGTATCCCAGTGAAGCTGCTGCACGAGGCGGCGGGGCACGTGGTGACCGTGGAGCTCAAGACCGGCGAGGTGTACCGCGGCTCCATGGTCGAGTGCGAGGACAACTGGAACTGCCAGCTCGACAACATCACCTTCACCGCCAAGGACGGCAAGGTCTCCCAGCTGGAGCACGTCTTCATCAGAGGAAGCAGGGTCAGGTTCATGATCATACCCGACATGCTCAAGAACGCCCCCATG TTCAAGCGCCTCGAGGCTAGGATTAGGGGTAAAGGCTCAGCTATT GGTGTTGGCCGTGGCCGTGCCGTTGCTATGCGTGCTCGGGCTGCTGCTGGTCGTGGTGGTGGTCCAGTTGGACGGGGTGGTGCACCTCCTGTGAGGCGGTAGATTTACGGGCAGCTCATTGTATGCTGTTATGATATGGAGGAAGTCCAGGGAGTCTTTGTGTTCATCATCCAAAACGTTGGTTCAGCAGCCAGAGTGCATGTGAGCTAAGCTTATGTACCTCCATCCAGTTTAGTTTGC ] [+] EMBL C27983 [ ACCCAACCCTAGGAGGAAGATGAGCCGCAGCCTTGGTATCCCAGTGAAGCTGCTGCACGAGGCGGCGGGGCACGTGGTGACCGTGGAGCTCAAGACCGGCGAGGTGTACCGCGGCTCCATGGTCGAGTGCGAGGACAACTGGAACTGCCAGCTCGACAACATCACCTTCACCGCCAAGGACGGCAAGGTCTCCCAGCTGGAGCACGTCTTCATCAGAGGAAGCAGGGTCAGGTTCATGATCATACCCGACATGCTCAAGAACGCCCCCATG TTCAAGCGCCTCGAGGCTAGGATTAGGGGTAAAGGCTCAGCTATT GGTNTTGGCCGTGGCCGTGCCGTTGCTATNCGTTCTCGGGCTGCTtc ] [-] EMBL CF320128 [ CGAGGACAACTGGAACTGCCAGCTCGACAACATTCCCTTCACCGCCAAGG CGGCAAGGTCTCCCAGCTGGAGCACGTCTTCATCAGAGGAAGCAGGGTCAGGTTCATGATCATACCCGACATGCTCAAGAACGCCCCCATG TTCAAGCGCCTCGAGGCTAGGATTAGGGGTAAAGGCTCAGCTATT GGTGTTGGCCGTGGCCGTGCCGTTGCTATGCGTGCTCGGGCTGCTGCTGGTCGTGGTGGTGGTCCAGTTGGACGGGGTGGTGCACCTCCTGTGAGGCGGTAGATTTACGGGCAGCTCATTGTATGCTGTTATGATATGGAGGAAGTCCAGGGAGTCTTTGTGTTCATCATCCAAAACGTTGGTTCAGCAGCCAGAGTGCATGTGAGCTAAGCTTATGTACCTCCATCCAGTTTAGTTTGCC] [+] EMBL AU085795 [ GCTCGACAACATCACCTTCACCGCCAAGGACGGCAAGGTCTCCCAGCTGGAGCACGTCTTCATCAGAGGAAGCAGGGTCAGGTTCATGATCATACCCGACATGCTCAAGAACGCCCCCATG TTCAAGCGCCTCGAGGCTAGGATTAGGGGTAAAGGCTCAGCTATT GGTGTTGGCCGTGGCCGTGCCGTTGCTATGCGTGCTCGGGCTGCTGCTGGTCGTGGTGGTGGTCCAGTTGGACGGGGTGGTGCACCTCCTGTGAGGCGGTAGATTTACGGGCAGCTCATTGTATGCTGTTATGATATGGNGGAAGTCCAGGGAGTCTTTGTGTTCATCATCCAAAACGTTGGTTCAGCAGCCAGAGTGCATGTGAGCTAAGCTTATGTACCTCCATCCAGTTTAGTTTGC ] [-] EMBL CF296982 [ GGCAAGGTCTCCCAGCTGGAGCACGTCTTCATCAGAGGAAGCAGGGTCAGGTTCATGATCATACCCGACATGCTCAAGAACGCCCCCA G TTCAAGCGCCTCGAGGCTAGGATTAGGGGTAAAGGCTCAGCTATT GGTGTTGGCCGTGGCCGTGCCGTTGCTATGCGTGCTCGGGCTGCTGCTGGTCGTGGTGGTGGTCCAGTTGGACGGGGTGGTGCACCTCCTGTGAGGCGGTAGATTTACGGGCAGCTCATTGTATGCTGTTATGATATGGAGGAAGTCCAGGGAGTCTTTGTGTTCATCATCCAAAACGTTGGTTCAGCAGCCAGAGTGCATGTGAGCTAAGCTTATGTACCTCCATCCAGTTTAGTTTGCC] [-] EMBL CF309011 [ GCAAGGTCTCCCAGCTGGAGCACGTCTTCATCAGAGGAAGCAGGGTCAGGTTCATGATCATACCCGACATGCTCAAGAACGCCCCCATGNTTCAAGCGCCTCGGGGCTAGGATTAGGGGTAAAGGCTCAGCTATT GGTGTTGGCCGTGGCCGTGCCGTTGCTATGCGTGCTCGGGCTGCTGCTGGTCGTGGTGGTGGTCCAGTTGGACGGGGTGGTGCACCTCCTGTGAGGCGGTAGATTTACGGGCAGCTCATTGTATGCTGTTATGATATGGAGGAAGTCCAGGGAGTCTTTGTGTTCATCATCCAAAACGTTGGTTCAGCAGCCAGAGTGCATGTGAGCTAAGCTTATGTACCTCCATCCAGTTTAGTTTGCC] [-] EMBL OSA312768 [ TCGTGGTGGTGGTCCAGTTGGAC GGGTGGTGCACCTCCTGTGAGGCGGTAGATTTACGGGCAGCTCATTGTATGCTGTTATGATATGGAGGAAGTCCAGGGAGTCTTTGTGTTCATCATCCAAAACGTTGGTTCAGCAGCCAGAGTGCATGTGAGCTAAGCTTATGTACCTCCATCCAGTTTAGTTTGCC] consensusID : consensus_14917#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 690 fasta sequence [ATGGACTGAAGGAGTAGAAATCCGCCGCCGCCGCCGCCATCTTCCTCCTCCACCAGACCACCACCACCACCAACAACAACTCGTCGTCGCGTCTGCCTAGCTAGGGTTTCCCTTCTCTACCCAACCCTAGGAGGAAGATGAGCCGCAGCCTTGGTATCCCAGTGAAGCTGCTGCACGAGGCGGCGGGGCACGTGGTGACCGTGGAGCTCAAGACCGGCGAGGTGTACCGCGGCTCCATGGTCGAGTGCGAGGACAACTGGAACTGCCAGCTCGACAACATCACCTTCACCGCCAAGGACGGCAAGGTCTCCCAGCTGGAGCACGTCTTCATCAGAGGAAGCAGGGTCAGGTTCATGATCATACCCGACATGCTCAAGAACGCCCCCATGTTCAAGCGCCTCGAGGCTAGGATTAGGGGTAAAGGCTCAGCTATTGGGTGTTGGCCGTGGCCGTGCCGTTGCTATGCGTGCTCGGGCTGCTGCTGGTCGTGGTGGGTGGTCCAGTTGGACGGGGGTGGTGCACCTCCTGTGAGGCGGTAGATTTACGGGCAGCTCATTGTATGCTGTTATGATATGGNAGGAAGTCCAGGGGAGTCTTTGTGTTCATCATCCAAAACCGTTGGTTCAGCAGCCAGAGTGCATGTGAGCTAAGCTTATGTACCTCCATCCAGTTTAGTTTGCCTGTGTGCAG] [+] EMBL CF320127 [ATGGACTGAAGGAGTAGAAATCCGCCGCCGCCGCCGCCATCTTCCTCCTCCACCAGACCACCACCACCACCAACAACAACTCGTCGTCGCGTCTGCCTAGCTAGGGTTTCCCTTCTCTACCCAACCCTAGGAGGAAGATGAGCCGCAGCCTTGGTATCCCAGTGAAGCTGCTGCACGAGGCGGCGGGGCACGTGGTGACCGTGGAGCTCAAGACCGGCGAGGTGTACCGCGGCTCCATGGTCGAGTGCGAGGACAACTGGAACTGCCAGCTCGACAACATCACCTTCACCGCCAAGGACGGCAAGGTCTCCCAGCTGGAGCACGTCTTCATCAGAGGAAGCAGGGTCAGGTTCATGATCATACCCGACATGCTCAAGAACGCCCCCATGTTCAAGCGCCTCGAGGCTAGGATTAGGGGTAAAGGCTCAGCTATTGGGTGTTGGCCGTGGCCGTGCCGTTGCTATGCGTGCTCGGGCTGCTGCTGGTCGTGGTGGGTGGTCCAGTTGGACGGGGGTGGTGCACCTCCTGTGAGGCGGTAGATTTACGGGCAGCTCATTGTATGCTGTTATGATATGGNAGGAAGTCCAGGGGAGTCTTTGTGTTCATCATCCAAAACCGTTGGTTCAGCAGCCAGAGTGCATGTGAGCTAAGCTTATGTACCTCCATCCAGTTTAGTTTGCCTGTGTGCAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14917#2 CCCCTCGCCTCCATCTCTCTCATCTGCCCTCCTCGACTCGACTCGACTCCCCTCCGCCGC 60 consensus_14917#3 -------------------------------ATGGACT-GAAGGAGTAGAAATCCGCCGC 28 consensus_14917#1 ---------------------------------------------TCTCTTTTTTTTCCC 15 consensus_14917#0 ------------------------------------------------------------ consensus_14917#2 CGCCGCCGCCATCTTCCTCCTCCACCAGACCACCACCACCACCAACAACAACTCGTCGTC 120 consensus_14917#3 CGCCGCCGCCATCTTCCTCCTCCACCAGACCACCACCACCACCAACAACAACTCGTCGTC 88 consensus_14917#1 TGTCCGCTTTGCTTCGCCTGAGCCCTGAGCCGCCGCCTCC-CGTACTCCCTTGCGAGCTG 74 consensus_14917#0 --------------------------GAGCCGCCGCCTCC-CGTACTCCCTTGCGAGCTG 33 ** ** ** ** * ** * ** * consensus_14917#2 GCGTCTGCCTAGCTAGGGTTTCCCTTCTCTACCCAACCCTAGGAGGAAGATGAGCCGCAG 180 consensus_14917#3 GCGTCTGCCTAGCTAGGGTTTCCCTTCTCTACCCAACCCTAGGAGGAAGATGAGCCGCAG 148 consensus_14917#1 GGGTTTTAGCGGCGGCGGCGAGAGGAGAGGAGGAGGAGGAGAGGGGAAGATGAGCCGGAG 134 consensus_14917#0 GGGTTTTAGCGGCGGCGGCGAGAGAGGAGGAGGAGGAGGAGAGGGGAAGATGAGCCGGAG 93 * ** * ** ** * * ************* ** consensus_14917#2 CCTTGGTATCCCAGTGAAGCTGCTGCACGAGGCGGCGGGGCACGTGGTGACCGTGGAGCT 240 consensus_14917#3 CCTTGGTATCCCAGTGAAGCTGCTGCACGAGGCGGCGGGGCACGTGGTGACCGTGGAGCT 208 consensus_14917#1 CCTGGGGATCCCGGTGAAGCTGCTGCACGAGGCGGCGGGGCACGTGGTGACGGTGGAGCT 194 consensus_14917#0 CCTGGGGATCCCGGTGAAGCTGCTGCACGAGGCGGCGGGGCACGTGGTGACGGTGGAGCT 153 *** ** ***** ************************************** ******** consensus_14917#2 CAAGACCGGCGAGGTGTACCGCGGCTCCATGGTCGAGTGCGAGGACAACTGGAACTGCCA 300 consensus_14917#3 CAAGACCGGCGAGGTGTACCGCGGCTCCATGGTCGAGTGCGAGGACAACTGGAACTGCCA 268 consensus_14917#1 CAAGACCGGCGAGGTGTACCGCGGCGCCATGGTGGAGTGCGAGGACAACTGGAACTGCCA 254 consensus_14917#0 CAAGACCGGCGAGGTGTACCGCGGCGCCATGGTGGAGTGCGAGGACAACTGGAACTGCCA 213 ************************* ******* ************************** consensus_14917#2 GCTCGACAACATCACCTTCACCGCCAAGGACGGCAAGGTCTCCCAGCTGGAGCACGTCTT 360 consensus_14917#3 GCTCGACAACATCACCTTCACCGCCAAGGACGGCAAGGTCTCCCAGCTGGAGCACGTCTT 328 consensus_14917#1 GCTCGACAACATCACCTTCACCGCCAAGGATGGCAAGGTGTCGCAGCTGGAGCACGTCTT 314 consensus_14917#0 GCTCGACAACATCACCTTCACCGCCAAGGATGGCAAGGTGTTGCAGCTGGAGCACGTCTT 273 ****************************** ******** * ***************** consensus_14917#2 CATCAGAGGAAGCAGGGTCAGGTTCATGATCATACCCGACATGCTCAAGAACGCCCCCAT 420 consensus_14917#3 CATCAGAGGAAGCAGGGTCAGGTTCATGATCATACCCGACATGCTCAAGAACGCCCCCAT 388 consensus_14917#1 CATCAGAGGAAGCAGAGTGAGATTTATGATTATACCGGATATGCTCAAGAACGCACCCAT 374 consensus_14917#0 CATCAGAGGAAGCAGAGTGAGATTTATGATTATACCGGATATGCTCAAGAACGCACCCAT 333 *************** ** ** ** ***** ***** ** ************** ***** consensus_14917#2 GTTCAAGCGCCTCGAGGCTAGGATTAGGGGTAAAGGCTCAGCTATTGG-TGTTGGCCGTG 479 consensus_14917#3 GTTCAAGCGCCTCGAGGCTAGGATTAGGGGTAAAGGCTCAGCTATTGGGTGTTGGCCGTG 448 consensus_14917#1 GTTCAAGCGCCTGGAAGCAAGGATTAGGGGCAAAGGATCAGCTATTGG-AGTCGGGCGTG 433 consensus_14917#0 GTTCAAGCGCCTGGAAGCAAGGATTAGGGGCAAAGGATCAGCTCTTGG-AGTCGGGCGTG 392 ************ ** ** *********** ***** ****** **** ** ** **** consensus_14917#2 GCCGTGCCGTTGCTATGCGTGCTCGGGCTGCTGCTGGTCGTGGTGG-TGGTCCAGTTGGA 538 consensus_14917#3 GCCGTGCCGTTGCTATGCGTGCTCGGGCTGCTGCTGGTCGTGGTGGGTGGTCCAGTTGGA 508 consensus_14917#1 GCCGTGCGGTTGCAATGCGTGCCCGGGCTGCTGCTGGTCGTGGTGG-TGGTCCTGTTGGA 492 consensus_14917#0 GCCGCGCGGTTGCAATGCGTGCCCCGTCTGCTGCTGGTCGTTGTGT-TGGTCCTGTTGCA 451 **** ** ***** ******** * * ************** *** ****** **** * consensus_14917#2 CGGGG-TGGTGCACCTCCTGTGAGGCGGTAGATTTACGGGCAGCTCATTGTAT-GC---- 592 consensus_14917#3 CGGGGGTGGTGCACCTCCTGTGAGGCGGTAGATTTACGGGCAGCTCATTGTAT-GC---- 563 consensus_14917#1 CGGGG-TGGTGCACCTCCGGTGAGGAGATAGATTGTCTGTCATCT-ATTATCT-GCCTGA 549 consensus_14917#0 CGGGG-TTTTGCACCTCCCTTTATGAAATTCAATGCCTGT--ACTTATTATCTTGTCTTA 508 ***** * ********* * * * * * * * * ** *** * * * consensus_14917#2 ---------TGTTATGATATGGA--GGAAGTCCAGGG-AGTC-----------TTTGTGT 629 consensus_14917#3 ---------TGTTATGATATGGNA-GGAAGTCCAGGGGAGTC-----------TTTGTGT 602 consensus_14917#1 GGAAGTTGATGCCTTAATTTGAAA-ACATTGCTTGAGAATTAAACA------GCCAGTGT 602 consensus_14917#0 AGTCGTTGATGCTTTAATGTGAAATTCACTGCTTATAATTTTTACACTCCCCGCCGTTGC 568 ** * ** ** * * * ** consensus_14917#2 TCATCAT-CCAAAAC-GTTGGTTCA--GCAGCCAGAGTGCATGT-----GAGCTAAGCTT 680 consensus_14917#3 TCATCAT-CCAAAACCGTTGGTTCA--GCAGCCAGAGTGCATGT-----GAGCTAAGCTT 654 consensus_14917#1 GCATCTTGTCTGATCAATCCGCTTAAAGGAGGATGCATGCATGTTGGTGGCGTCGATTTC 662 consensus_14917#0 TTTTTTTCTGTACTCTCTCGTTCCGCGGCTGATTCGTAACTCTTTTCCTAATTTAATTTT 628 * * * * * * * * * * consensus_14917#2 ATGTACCTCCATC--CAGTTTAGTTTGCC------------------------------- 707 consensus_14917#3 ATGTACCTCCATC--CAGTTTAGTTTGCCTGTGTGCAG---------------------- 690 consensus_14917#1 ATGTATTTTTAATGTTAGATATGGTAGGTTGAGTATGATATTTCAAAGGTAGAAACATTG 722 consensus_14917#0 ACCTCTCTTCTCT--TACATTTTTTTACTCCTCTGTTGTTGTTTGCACGGTCGGTCCAAC 686 * * * * * * consensus_14917#2 ------------------------------------------------------------ consensus_14917#3 ------------------------------------------------------------ consensus_14917#1 TGTTCGTTAACCTGATTTGAATGACAAGACCAGTTTCCCCTGTCATTGAGCGAATTTCCT 782 consensus_14917#0 TTCCATCATCTATGCTTTTATTCCTATGTGTATTTCTTCTCCTCTCGTTGCCCCTCTTAA 746 consensus_14917#2 ------------------------------------------------------------ consensus_14917#3 ------------------------------------------------------------ consensus_14917#1 TTTGTATCTACCAGTTTAGTGGCCGTTTGGAACGCAGTGATTCTTAAAATTCATGTGCTC 842 consensus_14917#0 TTTGTTTTTCTGATATCTATTCTATTTCTTTATG-ACTTTTTCCCATGTCTTCTTCCAAT 805 consensus_14917#2 ------------------------------------------------------------ consensus_14917#3 ------------------------------------------------------------ consensus_14917#1 CAAAGGCCTAGTGGTTATCTGGCAACTTCCTGAATCGGATGCTTCTTATAAGTTATTATA 902 consensus_14917#0 ATAGCCTTTCATCTTAACTTTTTCCCTCATTGTCCTGTGTTTTTCACTCGTTCTCTTCTT 865 consensus_14917#2 ------------------------------------------------------------ consensus_14917#3 ------------------------------------------------------------ consensus_14917#1 ACGCACTTTGTAT----------------------------------------------- 915 consensus_14917#0 GTAGGCTCTTGGCCCAAAGTGCTATCATATTTTACAGACGTATGCAGTGGTTCTTGTGTC 925 consensus_14917#2 ------------------------------------------------------------ consensus_14917#3 ------------------------------------------------------------ consensus_14917#1 ------------------------------------------------------------ consensus_14917#0 ACGTCTTTGTCTCGAGTAGTATAAATGTACTTATCATATACGAAGTTAGNTTGTGGATGT 985 consensus_14917#2 ---------------- consensus_14917#3 ---------------- consensus_14917#1 ---------------- consensus_14917#0 GAGCTTTATTCTCATA 1001 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||