These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14944#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1707 fasta sequence [GGAAGATGGAGCCGCCGCCGCCGCCGCCGCCGCCGCCGCTGACTACGACGGGTCGCCGCCGCCACCGCGGGGGAAGAAGAAGAAGGACGACGAGGAAAGGTCGTCGTCGTTGCCGGAGGAGAAAGACGCGAAGAACGGCGGCGGCGACGAGGTCCTGAGCGCGGTGACGACGGAGGATTCCTCGGCCGGTGCCGCCAAGTCGTGCTCGCCGTCGGCAGAGGGCCACAGCAAGAGGAAGCCGTCGTCGTCGTCGTCATCGGCGGCGGCCGGCAAGAACTCTCACGGCAAGCGCAAGGTGAAGGTGGACTGGACGCCGGAGTTGCACCGGCGGTTCGTGCAGGCGGTGGAGCAGCTCGGGATAGACAAGGCCGTGCCGTCCAGGATCCTGGAGCTCATGGGCATCGAGTGCCTCACTCGCCACAACATCGCCAGCCATCTCCAGAAATATCGGTCGCACAGGAAACATCTGATGGCGAGGGAGGCGGAGGCGGCGAGCTGGACGCAGAAGCGGCAGATGTACACCGCCGCCGCCGCCGCCGCCGCGGTGGCAGCCGGCGGCGGGCCAAGGAAGGACGCCGCCGCCGCCACTGCGGCGGTGGCCCCGTGGGTCATGCCGACCATCGGTTTCCCTCCGCCGCACGCGGCGGCGATGGTGCCTCCCCCGCCGCACCCTCCACCGTTCTGCCGGCCGCCGCTGCACGTGTGGGGCCACCCGACCGCCGGCGTCGAGCCGACCACCGCGGCGGCGCCACCACCACCCTCGCCGCACGCGCAGCCGCCGTTGCTGCCCGTCTGGCCGCGCCACCTGGCGCCGCCGCCGCCGCCGCTGCCGGCGGCGTGGGCGCACGGCCACCAGCCGGCGCCGGTGGACCCGGCGGCGTACTGGCAGCAACAGTATAACGCGGCGAGGAAGTGGGGCCCGCAGGCAGTGACACCGGGGACGCCGTGTATGCCGCCACCGTTGCCTCCAGCCGCCATGTTGCAGAGGTTTCCTGTACCGCCGGTGCCTGGAATGGTGCCGCACCCCATGTACAGACCGATACCGCCGCCGTCACCGCCGCAGGGGAATAAACTCGCTGCCTTGCAGCTTCAGCTTGATGCCCACCCGTCTAAGGAGAGCATAGACGCAGCCATCGGAGATGTTTTAGTGAAGCCATGGCTGCCGCTTCCCCTCGGCCTCAAGCCACC-GTCGCTGGACAGCGTCATGTCTGAGCTGCACAAGCAGGGCATCCCCAAGGTGCCA-CCGGCGGCGAGCGGTGCCGCCGGCTGATACACATCGATCACACCGATCGTCTCCTCCGCCGCCGGCGAAAAAAAAAAAAACCTCTCCTCTCTGCTCCGGCCGGTCTCCA-CGATGAGAAGAGGCAATGCAACCCGTCGACTTGTCGTAGCTTCGTCAGTGTGAATTGATTCATCATGCATTCACCCAATGCGTGTAGACGAGCTCGATGTGTAAACTAGCTAGTGTGTCTTGTGTGTTTGCATTGACATATCTGGGTTTTTGCTCTCATGGAATGTGCATGCAGAGACGATGCAGGCGACATGCATGCCTACCTGAGAGTTGCGTGTAAAATATAAAATGTTTTGAGATGGAACGTACACGGACTGCTATATATATTTTGGACAGCTGGTAATTAAATTGAGAAATAACCA-AGGAACTTACACTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK121019 [GGAAGATGGAGCCGCCGCCGCCGCCGCCGCCGCCGCCGCTGACTACGACGGGTCGCCGCCGCCACCGCGGGGGAAGAAGAAGAAGGACGACGAGGAAAGGTCGTCGTCGTTGCCGGAGGAGAAAGACGCGAAGAACGGCGGCGGCGACGAGGTCCTGAGCGCGGTGACGACGGAGGATTCCTCGGCCGGTGCCGCCAAGTCGTGCTCGCCGTCGGCAGAGGGCCACAGCAAGAGGAAGCCGTCGTCGTCGTCGTCATCGGCGGCGGCCGGCAAGAACTCTCACGGCAAGCGCAAGGTGAAGGTGGACTGGACGCCGGAGTTGCACCGGCGGTTCGTGCAGGCGGTGGAGCAGCTCGGGATAGACAAGGCCGTGCCGTCCAGGATCCTGGAGCTCATGGGCATCGAGTGCCTCACTCGCCACAACATCGCCAGCCATCTCCAGAAATATCGGTCGCACAGGAAACATCTGATGGCGAGGGAGGCGGAGGCGGCGAGCTGGACGCAGAAGCGGCAGATGTACACCGCCGCCGCCGCCGCCGCCGCGGTGGCAGCCGGCGGCGGGCCAAGGAAGGACGCCGCCGCCGCCACTGCGGCGGTGGCCCCGTGGGTCATGCCGACCATCGGTTTCCCTCCGCCGCACGCGGCGGCGATGGTGCCTCCCCCGCCGCACCCTCCACCGTTCTGCCGGCCGCCGCTGCACGTGTGGGGCCACCCGACCGCCGGCGTCGAGCCGACCACCGCGGCGGCGCCACCACCACCCTCGCCGCACGCGCAGCCGCCGTTGCTGCCCGTCTGGCCGCGCCACCTGGCGCCGCCGCCGCCGCCGCTGCCGGCGGCGTGGGCGCACGGCCACCAGCCGGCGCCGGTGGACCCGGCGGCGTACTGGCAGCAACAGTATAACGCGGCGAGGAAGTGGGGCCCGCAGGCAGTGACACCGGGGACGCCGTGTATGCCGCCACCGTTGCCTCCAGCCGCCATGTTGCAGAGGTTTCCTGTACCGCCGGTGCCTGGAATGGTGCCGCACCCCATGTACAGACCGATACCGCCGCCGTCACCGCCGCAGGGGAATAAACTCGCTGCCTTGCAGCTTCAGCTTGATGCCCACCCGTCTAAGGAGAGCATAGACGCAGCCATCGGAGATGTTTTAGTGAAGCCATGGCTGCCGCTTCCCCTCGGCCTCAAGCCACC GTCGCTGGACAGCGTCATGTCTGAGCTGCACAAGCAGGGCATCCCCAAGGTGCCA CCGGCGGCGAGCGGTGCCGCCGGCTGATACACATCGATCACACCGATCGTCTCCTCCGCCGCCGGCGAAAAAAAAAAAAACCTCTCCTCTCTGCTCCGGCCGGTCTCCA CGATGAGAAGAGGCAATGCAACCCGTCGACTTGTCGTAGCTTCGTCAGTGTGAATTGATTCATCATGCATTCACCCAATGCGTGTAGACGAGCTCGATGTGTAAACTAGCTAGTGTGTCTTGTGTGTTTGCATTGACATATCTGGGTTTTTGCTCTCATGGAATGTGCATGCAGAGACGATGCAGGCGACATGCATGCCTACCTGAGAGTTGCGTGTAAAATATAAAATGTTTTGAGATGGAACGTACACGGACTGCTATATATATTTTGGACAGCTGGTAATTAAATTGAGAAATAACCA AGGA ] [+] EMBL AF318582 [GGAAGATGGA GCCGCCGCCGCCGCCGCCGCCGCTGACTACGACGGGTCGCCGCCGCCACCGCGGGGGAAGAAGAAGAAGGACGACGAGGAAAGGTCGTCGTCGTTGCCGGAGGAGAAAGACGCGAAGAACGGCGGCGGCGACGAGGTCCTGAGCGCGGTGACGACGGAGGATTCCTCGGCCGGCGCCGCCAAGTCGTGCTCGCCGTCGGCAGAGGGCCACAGCAAGAGGAAGCCGTCGTCGTCGTCGTCATCGGCGGCGGCCGGCAAGAACTCTCACGGCAAGCGCAAGGTGAAGGTGGACTGGACGCCGGAGTTGCACCGGCGGTTCGTGCAGGCGGTGGAGCAGCTCGGGATAGACAAGGCCGTGCCGTCCAGGATCCTGGAGCTCATGGGCATCGAGTGCCTCACTCGCCACAACATCGCCAGCCATCTCCAGAAATATCGGTCGCACAGGAAACATCTGATGGCGAGGGAGGCGGAGGCGGCGAGCTGGACGCAGAAGCGGCAGATGTACACCGCCGCCGCCGCCGCCGCCGCGGTGGCAGCCGGCGGCGGGCCAAGGAAGGACGCCGCCGCCGCCACTGCGGCGGTGGCCCCGTGGGTCATGCCGACCATCGGTTTCCCTCCGCCGCACGCGGCGGCGATGGTGCCTCCCCCGCCGCACCCTCCACCGTTCTGCCGGCCGCCGCTGCACGTGTGGGGCCACCCGACCGCCGGCGTCGAGCCGACCACCGCGGCGGCGCCACCACCACCCTCGCCGCACGCGCAGCCGCCGTTGCTGCCCGTCTGGCCGCGCCACCTGGCGCCGCCGCCGCCGCCGCTGCCGGCGGCGTGGGCGCACGGCCACCAGCCGGCGCCGGTGGACCCGGCGGCGTACTGGCAGCAACAGTATAACGCGGCGAGGAAGTGGGGCCCGCAGGCAGTGACACCGGGGACGCCGTGTATGCCGCCACCGTTGCCTCCAGCCGCCATGTTGCAGAGGTTTCCTGTACCGCCGGTGCCTGGAATGGTGCCGCACCCCATGTACAGACCGATACCGCCGCCGTCACCGCCGCAGGGGAATAAACTCGCTGCCTTGCAGCTTCAGCTTGATGCCCACCCGTCTAAGGAGAGCATAGACGCAGCCATCGGAGATGTTTTAGTGAAGCCATGGCTGCCGCTTCCCCTCGGCCTCAAGCCACC GTCGCTGGACAGCGTCATGTCTGAGCTGCACAAGCAGGGCATCCCCAAGGTGCCA CCGGCGGCGAGCGGTGCCGCCGGCTGATACACATCGATCACACCGATCGTCTCCTCCGCCGCCGGCGAAAAAAAAAAAAACCTCTCCTCTCTGCTCCGGCCGGTCTCCA CGGTGAGAAGAGGCAATGCAACCCGTCGACTTGTCGTAGCTTCGTTAGTGTGAATTGATTCATCATGCATTCACCCAATGCGTGTAGACGAGCTCGATGTGTAAACTAGCTAGTGTGTCTTGTGTGTTTGCATTGACATATCTGGGTTTTTGCTCTCATGGAATGTGCATGCAGAGACGATGCAGGCGACATGCATGCCTACCTGAGAGTTGCGTGTAAAATATAAA ] [+] EMBL CB654465 [ TCGTCGCCTTTGCCGGAGGAGAAAGACGCGAAGAACGGCGGCGGCGACGAGGTCCTGAGCGCGGTGACGACGGAGGATTCCTCGGCCGGTGCCGCCAAGTCGTGCTCGCCGTCGGCAGAGGGCCACAGCAAGAGGAAGCCGTCGTCGTCGTCGTCATCGGCGGCGGCCGGCAAGAACTCTCACGGCAAGCGCAAGGTGAAGGTGGACTGGACGCCGGAGTTGCACCGGCGGTTCGTGCAGGCGGTGGAGCAGCTCGGGATAGACAAGGCCGTGCCGTCCAGGATCCTGGAGCTCATGGGCATCGAGTGCCTCACTCGCCACAACATCGCCAGCCATCTCCAGAAATATCGGTCGCACAGGAAACATCTGATGGCGAGGGAGGCGGAGGCGGCGAGCTGGACGCAGAAGCGGCAGATGTACACCGCCGCCGCCGCCGCCGCCGCGGTGGCAGCCGGCGGCGGGCCAAGGAAGGACGCCGCCGCCGCCACTGCGGCGGTGGCCCCGTGGGTCATGCCGACCATCGGTTTCCCTCCGCCGCACGCGGGGGCGATGGTGCCTCCCCCGCCGGACCCTCCACCGTTCTGCCGGCCGCCGCTG ] [+] EMBL CB628834 [ AGGTCCTGAGCGCGGTGACGACGGAGGATTCCTCGGCCGGCGCCGCCAAGTCGTGCTCGCCGTCGGCAGAGGGCCACAGCAAGAGGAAGCCGTCGTCGTCGTCGTCATCGGCGGCGGCCGGCAAGAACTCTCACGGCAAGCGCAAGGTGAAGGTGGACTGGACGCCGGAGTTGCACCGGCGGTTCGTGCAGGCGGTGGAGCAGCTCGGGATAGACAAGGCCGTGCCGTCCAGGATCCTGGAGCTCATGGGCATCGAGTGCCTCACTCGCCACAACATCGCCAGCCATCTCCAGAAATATCGGTCGCACAGGAAACATCTGATGGCGAGGGAGGCGGAGGCGGCGAGCTGGACGCAGAAGCGGCAGATGTACACCGCCGCCGCCGCCGCCGCCGCcgc ] [+] EMBL CF325249 [ TGGACTGGACGCCGGAGTTGCACCGGCGGTTCGTGCAGGCGGTGGAGCAGCTCGGGATAGACAAGGCCGTGCCGTCCAGGATCCTGGAGCTCATGGGCATCGAGTGCCTCACTCTCCACAACATCGCCAGCCATCTGCAAAAATATCGGTCGCACATGAAACATCTGATGGCCAGGGAGGCGGAGGCGGCGATCTGGACGCATAATCGGCAGATGTACACCGTCGTCGCCGCCGCCGCCGCTGTGGCATCCGGCGGCGGGCCAAG ] [-] EMBL CB671122 [ CCGGCGCCGGTGGACCCGGCGGCGTACTGGCAGCAACAGTATAACGCGGCGAGGAAGTGGGGCCCGCAGGCAGTGACACCGGGGACGCCGTGTATGCCGCCACCGTTGCCTCCAGCCGCCATGTTGCAGAGGTTTCCTGTACCGCCGGTGCCTGGAATGGTGCCGCACCCCATGTACAGACCGATACCGCCGCCGTCACCGCCGCAGGGGAATAAACTCGCTGCCTTGCAGCTTCAGCTTGATGCCCACCCGTTTAAGGAGAGCATAGACGCAGCCATCGGAGATGTTTTAGTGAAGCCATGGCTGCCGCTTCCCCTCGGCCTCAAGCCACC GTCGCTGGACAGCGTCATGTTTGAGCTGCACAAGCAGGGCATCCCCAAGGTGCCA CCGGCGGCGAGCGGTGCCCCCGGCTGATACCCATCGATCACCCCGATCGTTTCCTCCGCCGCCGGCGAAAAAAAAAAAAACCTTTCCTCTTTGCTCCGGCCGGTCTCCA CGATGAGAAGAGGCAATGCAACCCGTCGACTTGTCGTAGCTTCGTCAGTGTGAATTGATTCATCATGCATTCACCCAATGCGTGTAGACGAGCTCGATGTGTAAACTAGCTAGTGTGTTTTGTGTGTTTGCATTGACATATCTGGGTTTTTGCTCTCATGGAATGTGCATGCAGAGACGATGCAGGCGACATGCATGCCTACCTGAGAGTTGCGTGTAAAATATAAAATGTTTTGAGATGGAACGTACACGGACTGCTATATATATTTTGGACAcg ] [+] EMBL BM421736 [ AGATGTTTTAGTGAACCCATGGCTCCCGCTTCCCCTCGGCCTCAAGCCACC GTCGCTGGACAGCGTCATGTCTGAGCTGCACAAGCAGGGCATCCCCAAGGTGCCACCCGGCGGCGAGCGGTGCCGCCGGCTGATACACATCGATCACACCGATCGTCTCCTCCGCCGCCGGCGAAAAAATAAAAAACCTCTCCTCTCTGCTCCGGCCGGTCTCCANCGGTGAGAAGAGGCAATGCAACCCGTCGACTTGTCGTAGCTTCGTCAGTGTGAATTGATTCATCATGCATTCACCCAATGCGTGTAGACGAGCTCGATGTGTAAACTAGCTAGTGTGTCTTGTGTGTTTGCATTGACATATCTGGGTTTTTGCTCTCATGGAATGTGCATGCAGAGACGATGCAGGCGACATGCATGCCTACCTGAGAGTTGCGTGTAAAATATAAAATGTTTTGAGATGGAACGTACACGGACTGCTATATATATTTTGGACAGCTGGTAATTAAATTGAGAAATAACCACAGGAACTTACACTTAAAAAAAAAA ] [+] EMBL BI806871 [ GTGAAGCCATGGCT CCGCTTCCCCTC GCCTCAAGCCACCGGTCGCT GACAGCGTCATGTCTGAGCTGCACAAGCAGGGCATCCCCAAGGTGCCA CCGGCGGCGAGCGGTGCCGCCGGCTGATACACATCGATCACACCGATCGTCTCCTCCGCCGCCGGCGAAAAAATAAAAAACCTCTCCTCTCTGCTCCGGCCGGTCTCCA CGATGAGAAGAGGCAATGCAACCCGTCGACTTGTCGTAGCTTCGTCAGTGTGAATTGATTCATCATGCATTCACCCAATGCGTGTAGACGAGCTCGATGTGTAAACTAGCTAGTGTGTCTTGTGTGTTTGCATTGACATATCTGGGTTTTTGCTCTCATGGAATGTGCATGCAGAGACGATGCAGGCGACATGCATGCCTACCTGAGAGTTGCGTGTAAAATATAAAATGTTTTGAGATGGAACGTACACGGACTGCTATATATATTTTGGACAGCTGGTAATTAAATTGAGAAAaa ] [+] EMBL BI808509 [ ATCGATCACACCGATCGTCTCCTCCGCCGCCGG GCGAGAAAATGGAACCTCTCCTCTCTGCTCCGGCCGGTCTCCA CGGTGAGAAGA GCAATGCAACCCGTCGACTTGTCGTAGCTTCGTCAGTGTGAATTGATTCATCATGCATTCACCCAATGCGTGTAGACGAGCTCGATGTGTAAACTAGCTAGTGTGTCTTGTGTGTTTGCATTGACATATCTGGGTTTTTGCTCTCATGGAATGTGCATGCAGAGACGATGCAGGCGACATGCATGCCTACCTGAGAGTTGCGTGTAAAATATAAAATGTTTTGAGATGGAACGTACACGGACTGCTATATATATTTTGGACAGCTGGTAATTAAATTGAGAAATAACCA AGGAACTTACACTTAAAAAAAA ] [+] EMBL AU197974 [ TCACCCAATGCGTGTAGACGAGCTCGATGTGTAAACTAGCTAGTGTGTCTTGTGTGTTTGCATTGACATATCTGGGTTTTTGCTCTCATGGAATGTGCATGCAGAGACGATGCAGGCGACATGCATGCCTACCTGAGAGTTGCGTGTAAAATATAAAATGTTTTGAGATGGAACGTACACGGACTGCTATATATATTTTGGACAGCTGGTAATTAAATTGAGAAATAACCA AGGAACTTACACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_14944#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 785 fasta sequence [ATAACGCGGCGAGGAAGTGGGGCCCGCAGGCAGTGACACCGGGGACGCCGTGTATGCCGCCACCGTTGCCTCCAGCCGCCATGTTGCAGAGGTTTCCTGTACCGCCGGTGCCTGGAATGGTGCCGCACCCCATGTACAGACCGATACCGCCGCCGTCACCGCCGCAGGGGAATAAACTCGCTGCCTTGCAGCTTCAGCTTGATGCCCACCCGTCTAAGGAGAGCATAGACGCAGCCATCGGAGATGTTTTAGTGAAGCCATGGCTGCCGCTTCCCCTCGGCCTCAAGCCACCGTCGCTGGACAGCGTCATGTTTGAGCTGCACAAGCAGGGCATCCCCAAGGTGCCACCGGCGGCGAGCGGTGCCGCCGGCTGATACACATCGATCACACCGATCGTTTCCTCCGCCGCCGGCGAAAAAAAAAAAAACCTCTCCTCTTTGCTCCGGCCGGTCTCCACGATGAGAAGAGGCAATGCAACCCGTCGACTTGTCGTAGCTTCGTCAGTGTGAATTGATTCATCATGCATTCACCCAATGCGTGTAGACGAGCTCGATGTGTAAACTAGCTAGTGTGTCTTGTGTGTTTGCATTGACATATCTGGGTTTTTGCTCTCATGGAATGTGCATGCAGAGACGATGCAGGCGACATGCATGCCTACCTGAGAGTTGGGTGTAAAATATAAAATGTTTTGAGATGGAACGTACACGGACTGCTATATATATTTTGGACAGCTG-GTAATTAAGTTGAGAAATAACCAAGGAACTTACACTTATGGCTTAAAAGGA] [-] EMBL CB654466 [ATAACGCGGCGAGGAAGTGGGGCCCGCAGGCAGTGACACCGGGGACGCCGTGTATGCCGCCACCGTTGCCTCCAGCCGCCATGTTGCAGAGGTTTCCTGTACCGCCGGTGCCTGGAATGGTGCCGCACCCCATGTACAGACCGATACCGCCGCCGTCACCGCCGCAGGGGAATAAACTCGCTGCCTTGCAGCTTCAGCTTGATGCCCACCCGTCTAAGGAGAGCATAGACGCAGCCATCGGAGATGTTTTAGTGAAGCCATGGCTGCCGCTTCCCCTCGGCCTCAAGCCACCGTCGCTGGACAGCGTCATGTTTGAGCTGCACAAGCAGGGCATCCCCAAGGTGCCACCGGCGGCGAGCGGTGCCGCCGGCTGATACACATCGATCACACCGATCGTTTCCTCCGCCGCCGGCGAAAAAAAAAAAAACCTCTCCTCTTTGCTCCGGCCGGTCTCCACGATGAGAAGAGGCAATGCAACCCGTCGACTTGTCGTAGCTTCGTCAGTGTGAATTGATTCATCATGCATTCACCCAATGCGTGTAGACGAGCTCGATGTGTAAACTAGCTAGTGTGTCTTGTGTGTTTGCATTGACATATCTGGGTTTTTGCTCTCATGGAATGTGCATGCAGAGACGATGCAGGCGACATGCATGCCTACCTGAGAGTTGGGTGTAAAATATAAAATGTTTTGAGATGGAACGTACACGGACTGCTATATATATTTTGGACAGCTG GTAATTAAGTTGAGAAATAACCAAGGAACTTACACTTATGGCTTAAAAGGA] [-] EMBL CB652703 [ AGTGGGGCCCGCAGGCAGTGACACCGGGGACGCCGTGTATGCCGCCACCGTTGCCTCCAGCCGCCATGTTGCAGAGGTTTCCTGTACCGCCGGTGCCTGGAATGGTGCCGCACCCCATGTACAGACCGATACCGCCGCCGTCACCGCCGCAGGGGAATAAACTCGCTGCCTTGCAGCTTCAGCTTGATGCCCACCCGTCTAAGGAGAGCATAGACGCAGCCATCGGAGATGTTTTAGTGAAGCCATGGCTGCCGCTTCCCCTCGGCCTCAAGCCACCGTCGCTGGACAGCGTCATGTTTGAGGTGCACAAGCAGGGCATCCCCAAGGTGCCACCGGCGGCGAGCGGTGCCGCCGGTTGATACACATCGATCACACCGATTGTTTCCTCCGCCGCCGGGGAAAAAAAAAAAAACCTCTCCTTTTTGCTCCGGCCGGTCTCCACGATGAGAAGAGGCAATGCAACCCGTCGACTTGTCGTAGCTTCGTCAGTGTGAATTGATTCATCATGCATTCACCCAATGCGTGTAGACGAGCTCGATGTGTAAACTAGCTAGTGTGTCTTGTGTGTTTGCATTGACATATCTGGGTTTTTGCTCTCATGGAATGTGCATGCAGAGACGATGCAGGCGACATGCATGCCTACCTGAGAGTTGCGTGTAAAATATAAAATGTTTTGAGATGGAACGTACACGGACTGCTATAGATATTTTGGACAGCTGCGTAATTAAATTGAGAAAAAAAAAAGaag ] [-] EMBL CB682576 [ TGCAGAGGTTTCCTGTACCGCCGGTGCCTGGAATGGTGCCGCACCCCATGTACAGACCGATACTGCCGCCGTCACCGCCGCAGGGGAATAAACTCGTTGCCTTGCAGCTTCAGCTTGATGCCCACCCGTTTAAGGAGAGCATAGACGCAGCCATCGGAGATGTTTTAGTGAAGCCATGGGTGCCGCTTCCCCTCGGCCTCAAGCCACCGTCGCTGGACAGCGTCATGTTTGAGCTGCACAAGCAGGGCATCCCCAAGGTGCCACCGGCGGCGAGCGGTGCCGCCGGCTGCTACCCATTGATCCCCCCGATGGTTTCGTCgg ] consensusID : consensus_14944#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 758 fasta sequence [TTAAATGCTTATATATTTTTGGCTGGTGTATGTGTTATGTACAGTTGCAGAGGTTTCCTGTACCGCCGGTGCCTGGAATGGTGCCGCACCCCATGTACAGACCGATACCGCCGCCGTCACCGCCGCAGGGGAATAAACTCGCTGCCTTGCAGCTTCAGCTTGATGCCCACCCGTCTAAGGAGAGCATAGACGCAGCCATCGGAGATGTTTTAGTGAAGCCATGGCTGCCGCTT--CCCCTCGG--CCTC--AAG-CCA-CCGTCGCT--GGACAGCGTCATGTTTGAGCTGCACAAGCAGGGCATCCCCAAGGTGCCACCGGCGGCGAGCGGTGCC-GCCGGCTGATACACATCGATCACACCGATCGTCTCCTCC-GCC-GCCGGCGAAAAAA-AAAAAAACCTCTCCTCTCTGCTCCGGCCGGTCTC-CACGGTGAGAAGAGGCAATGCAACCCGTCGACTTGTCGTAGCTTCGTCAGTGTGAATTGATTCATCATGCATTCACCCAATGCGTGTAGACGAGCTCGATGTGTAAACTAGCTAGTGTGTCTTGTGTGTTTGCATTGACATATCTGGGTTTTTGCTCTCATGGAATGTGCATG-CAGAGACGATGCAGGCGACATGCATGCCTACCTGAGAGTTGCGTGTAAAATATAAAATGTTTTGAGATGGAACGTACACGGACTGCTATATATAT-TTTGGACAGCTGGTAATTAAATGGAGAAATAACCAAGGAACTTCCCCTTACCAAAAANTNNTTTNAAAANNAAAA] [-] EMBL CB628835 [TTAAATGCTTATATATTTTTGGCTGGTGTATGTGTTATGTACAGTTGCAGAGGTTTCCTGTACCGCCGGTGCCTGGAATGGTGCCGCACCCCATGTACAGACCGATACCGCCGCCGTCACCGCCGCAGGGGAATAAACTCGCTGCCTTGCAGCTTCAGCTTGATGCCCACCCGTCTAAGGAGAGCATAGACGCAGCCATCGGAGATGTTTTAGTGAAGCCATGGCTGCCGCTT CCCCTCGG CCTC AAG CCA CCGTCGCT GGACAGCGTCATGTTTGAGCTGCACAAGCAGGGCATCCCCAAGGTGCCACCGGCGGCGAGCGGTGCC GCCGGCTGATACACATCGATCACACCGATCGTCTCCTCC GCC GCCGGCGAAAAAA AAAAAAACCTCTCCTCTCTGCTCCGGCCGGTCTC CACGGTGAGAAGAGGCAATGCAACCCGTCGACTTGTCGTAGCTTCGTTAGTGTGAATTGATTCATCATGCATTCACCCAATGCGTGTAGACGAGCTCGATGTGTAAACTAGCTAGTGTGTCTTGTGTGTTTGCATTGACATATCTGGGTTTTTGCTCTCATGGAATGTGCATG CAGAGACGATGCAGGCGACATGCATGCCTACCTGAGAGTTGCGTGTAAAATATAAAATGTTTTGAGATGGAACGTACACGGACTGCTATATATAT TTTGGACAGCTGGTAATTAAATGGGGAAATAACCAAGGAACTTCCCCTTACCAAAA ] [-] EMBL CB648305 [ AGAGGTTTCCTGTACCGCCGGTGCCTGGAATGGTGCCGCACCCCATGTACAGACCGATACCGCCGCCGTCACCGCCGCAGGGGAATAAACTCGCTGCCTTGCAGCTTCAGCTTGATGCCCACCCGTCTAAGGAGAGCATAGACGCAGCCATCGGAGATGTTTTAGTGAAGCCATGGCTGCCGCTT CCCCTCGG CCTC AAG CCA CCGTCGCT GGACAGCGTCATGTTTGAGCTGCACAAGCAGGGCATCCCCAAGGTGCCACCGGCGGCGAGCGGTGCC GCCGGCTGATACACATCGATCACACCGATCGTCTCCTCC GCC GCCGGGGAAAAAA AAAAAAACCTCTCCTCTCTGCTCCGGCCGGTCTC CACGATGAGAAGAGGCAATGCAACCCGTCGACTTGTCGTAGCTTCGTCAGTGTGAATTGATTCATCATGCATTCACCCAATGCGTGTAGACGAGCTCGATGTGTAAACTAGCTAGTGTGTCTTGTGTGTTTGCATTGACATATCTGGGTTTTTGCTCTCATGGAATGTGCATG CAGAGACGATGCAGGCGACATGCATGCCTACCTGAGAGTTGCGTGTAAAATATAAAATGTTTTGAGATGGAACGTACACGGACTGCTATATATATGTTTGGACAGCTGGTAATTAAA ] [+] EMBL BM038646 [ cCCGCTTTCCCCCTCGGGCCCTCCAAAGCCCACCCGTCGCTGGGGACAGCGTCATGTCTGA CTGCACAA CAGGGCATCCCCAAGGTGCCACCGGCGGCGAGCGGTGCCAGCCGGCTGATACACATCGATCACACCGATCGTCTCCTCCAGCC GCCGGCGAAAAAA TAAAAAACCTCTCCTCTCTGCTCCGGCCGGTCTCACNCGGTGAGAAGAGGCAATGCAACCCGTCGACTTGTCGTAGCTTCGTCAGTGTGAATTGATTCATCATGCATTCACCC ATGCGTGTAGACGAGCTCGATGTGTAAACTAGCTAGTGTGTCTTGTGTGTTTGCATTGACATATCTGGGTTTTTGCTCTCATGGAATGT CATGCCAGAGACGAT CAGGCGACATGCATGCCTACCTGAGAGTTGCGTGTAAAATATAAAATGTTTTGAGATGGAACGTACCCGGACTGCTATATATAT TTTGGACCGCTGGTAAAAAAAaaaaaaaaa ] [+] EMBL BM421363 [ CGTCGCT GGACAGCGTCATGTCTGA CTGCACAAGCAGGGCATCCCCAAGGTGCCACCGGCGGCGAGCGGTGCC GCCGGCTGATACACATCGATCACACCGATCGTCTCCTCC GCCAGCCGGCGAAAAAATAAATAAACCTCTCCTCTCTGCTCCGGCCGGTCTC CACGGTGAGAAGAGGCAATGCAACCCGTCGACTTGTCGTAGCTTCGTCAGTGTGAATTGATTCATCATGCATTCACCC ATGCGTGTAGACGAGCTCGATGTGTAAACTAGCTAGTGTGTCTTGTGTGTTTGCATTGACATATCTGGGTTTTTGCTCTCATGGAATGTGCATG CAGAGACGATGCAGGCGACATGCATGCCTACCTGAGAGTTGCGTGTAAAATATAAAATGTTTTGAGATGGAAaaa ] [+] EMBL BE228985 [ cgaGTCNACTTGTCGTACCNTCGTCAGTGTGAATTGATTCATCATGCATTCACCCAATGCGTGTAGACGAGCTCGATGTGTAAACTAGCTAGTGTGTCTTGTGTGTTTGCATTGACATATCTGGGTTTTTGCTCTCATGGAATGTGCATG CAGAGACGATGCAGGCGACATGCATGCCTACCTGAGANTTGCGTGTAAAATATAAAATGTTTTGAGATNGAACGTACACGGACTGCTATATATAT TTTGGACAGCTGGTAATTAAATTGANAAATAACCNAGGAACTTACACTTTGGGAAAANTNNTTTNAAAANNAAAA] consensusID : consensus_14944#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 331 fasta sequence [ACCTCGGAGATGTGTTAGTGAACCCATGCTGTCCGCTTCCCTCGCCTCAAGCCACCCGTCGTTGGTACAGCGTCATGTTCTGATCTGCCCACACCCGGGCATCCCCAAGGTCCACCGGCGGCGACGGTCCCCCGGCTGATACACATCGATCACCCCGATCGTCTCCTCCCCNCCGGCGAAAAAAAAAAAAACCTCTCCTCTTTGCTCCGGCCGGTCTCCACCGATGAGAAGAGGCCATGCAACCCGTCGACTTGTCGTAGCTTCGTCNGTGTGAATTGATTCATCATGCATTCACCCCATGCGTGTAGACGAGCTCGATGTGTAAACTAGC] [+] EMBL BI807141 [ACCTCGGAGATGTGTTAGTGAACCCATGCTGTCCGCTTCCCTCGCCTCAAGCCACCCGTCGTTGGTACAGCGTCATGTTCTGATCTGCCCACACCCGGGCATCCCCAAGGTCCACCGGCGGCGACGGTCCCCCGGCTGATACACATCGATCACCCCGATCGTCTCCTCCCCNCCGGCGAAAAAAAAAAAAACCTCTCCTCTTTGCTCCGGCCGGTCTCCACCGATGAGAAGAGGCCATGCAACCCGTCGACTTGTCGTAGCTTCGTCNGTGTGAATTGATTCATCATGCATTCACCCCATGCGTGTAGACGAGCTCGATGTGTAAACTAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14944#2 ------------------------------------------------------------ consensus_14944#3 ------------------------------------------------------------ consensus_14944#0 GGAAGATGGAGCCGCCGCCGCCGCCGCCGCCGCCGCCGCTGACTACGACGGGTCGCCGCC 60 consensus_14944#1 ------------------------------------------------------------ consensus_14944#2 ------------------------------------------------------------ consensus_14944#3 ------------------------------------------------------------ consensus_14944#0 GCCACCGCGGGGGAAGAAGAAGAAGGACGACGAGGAAAGGTCGTCGTCGTTGCCGGAGGA 120 consensus_14944#1 ------------------------------------------------------------ consensus_14944#2 ------------------------------------------------------------ consensus_14944#3 ------------------------------------------------------------ consensus_14944#0 GAAAGACGCGAAGAACGGCGGCGGCGACGAGGTCCTGAGCGCGGTGACGACGGAGGATTC 180 consensus_14944#1 ------------------------------------------------------------ consensus_14944#2 ------------------------------------------------------------ consensus_14944#3 ------------------------------------------------------------ consensus_14944#0 CTCGGCCGGTGCCGCCAAGTCGTGCTCGCCGTCGGCAGAGGGCCACAGCAAGAGGAAGCC 240 consensus_14944#1 ------------------------------------------------------------ consensus_14944#2 ------------------------------------------------------------ consensus_14944#3 ------------------------------------------------------------ consensus_14944#0 GTCGTCGTCGTCGTCATCGGCGGCGGCCGGCAAGAACTCTCACGGCAAGCGCAAGGTGAA 300 consensus_14944#1 ------------------------------------------------------------ consensus_14944#2 ------------------------------------------------------------ consensus_14944#3 ------------------------------------------------------------ consensus_14944#0 GGTGGACTGGACGCCGGAGTTGCACCGGCGGTTCGTGCAGGCGGTGGAGCAGCTCGGGAT 360 consensus_14944#1 ------------------------------------------------------------ consensus_14944#2 ------------------------------------------------------------ consensus_14944#3 ------------------------------------------------------------ consensus_14944#0 AGACAAGGCCGTGCCGTCCAGGATCCTGGAGCTCATGGGCATCGAGTGCCTCACTCGCCA 420 consensus_14944#1 ------------------------------------------------------------ consensus_14944#2 ------------------------------------------------------------ consensus_14944#3 ------------------------------------------------------------ consensus_14944#0 CAACATCGCCAGCCATCTCCAGAAATATCGGTCGCACAGGAAACATCTGATGGCGAGGGA 480 consensus_14944#1 ------------------------------------------------------------ consensus_14944#2 ------------------------------------------------------------ consensus_14944#3 ------------------------------------------------------------ consensus_14944#0 GGCGGAGGCGGCGAGCTGGACGCAGAAGCGGCAGATGTACACCGCCGCCGCCGCCGCCGC 540 consensus_14944#1 ------------------------------------------------------------ consensus_14944#2 ------------------------------------------------------------ consensus_14944#3 ------------------------------------------------------------ consensus_14944#0 CGCGGTGGCAGCCGGCGGCGGGCCAAGGAAGGACGCCGCCGCCGCCACTGCGGCGGTGGC 600 consensus_14944#1 ------------------------------------------------------------ consensus_14944#2 ------------------------------------------------------------ consensus_14944#3 ------------------------------------------------------------ consensus_14944#0 CCCGTGGGTCATGCCGACCATCGGTTTCCCTCCGCCGCACGCGGCGGCGATGGTGCCTCC 660 consensus_14944#1 ------------------------------------------------------------ consensus_14944#2 ------------------------------------------------------------ consensus_14944#3 ------------------------------------------------------------ consensus_14944#0 CCCGCCGCACCCTCCACCGTTCTGCCGGCCGCCGCTGCACGTGTGGGGCCACCCGACCGC 720 consensus_14944#1 ------------------------------------------------------------ consensus_14944#2 ------------------------------------------------------------ consensus_14944#3 ------------------------------------------------------------ consensus_14944#0 CGGCGTCGAGCCGACCACCGCGGCGGCGCCACCACCACCCTCGCCGCACGCGCAGCCGCC 780 consensus_14944#1 ------------------------------------------------------------ consensus_14944#2 ------------------------------------------------------------ consensus_14944#3 ------------------------------------------------------------ consensus_14944#0 GTTGCTGCCCGTCTGGCCGCGCCACCTGGCGCCGCCGCCGCCGCCGCTGCCGGCGGCGTG 840 consensus_14944#1 ------------------------------------------------------------ consensus_14944#2 ------------------------------------------------------------ consensus_14944#3 ------------------------------------------------------------ consensus_14944#0 GGCGCACGGCCACCAGCCGGCGCCGGTGGACCCGGCGGCGTACTGGCAGCAACAGTATAA 900 consensus_14944#1 --------------------------------------------------------ATAA 4 consensus_14944#2 -----------------------------------TTAAATGCTTATATATTTTTGGCTG 25 consensus_14944#3 ------------------------------------------------------------ consensus_14944#0 CGCGGCGAGGAAGTGGGGCCCGCAGGCAGTGACACCGGGGACGCCGTGTATGCCGCCACC 960 consensus_14944#1 CGCGGCGAGGAAGTGGGGCCCGCAGGCAGTGACACCGGGGACGCCGTGTATGCCGCCACC 64 consensus_14944#2 GTGTATGTGTTATGTACAGTTGCAGAGGTTTCCTGTACCGCCGGTGCCTGGAATGGTGCC 85 consensus_14944#3 ------------------------------------------------------------ consensus_14944#0 GTTGCCTCCAGCCGCCATGTTGCAGAGGTTTCCTGTACCGCCGGTGCCTGGAATGGTGCC 1020 consensus_14944#1 GTTGCCTCCAGCCGCCATGTTGCAGAGGTTTCCTGTACCGCCGGTGCCTGGAATGGTGCC 124 consensus_14944#2 GCACCCCATGTACAGACCGATACCGCCGCCGTCACCGCCGCAGGGGAATAAACTCGCTGC 145 consensus_14944#3 ------------------------------------------------------------ consensus_14944#0 GCACCCCATGTACAGACCGATACCGCCGCCGTCACCGCCGCAGGGGAATAAACTCGCTGC 1080 consensus_14944#1 GCACCCCATGTACAGACCGATACCGCCGCCGTCACCGCCGCAGGGGAATAAACTCGCTGC 184 consensus_14944#2 CTTGCAGCTTCAGCTTGATGCCCACCCGTCTAAGGAGAGCATAGACGCAGCCATCGGAGA 205 consensus_14944#3 --------------------------------------------------ACCTCGGAGA 10 consensus_14944#0 CTTGCAGCTTCAGCTTGATGCCCACCCGTCTAAGGAGAGCATAGACGCAGCCATCGGAGA 1140 consensus_14944#1 CTTGCAGCTTCAGCTTGATGCCCACCCGTCTAAGGAGAGCATAGACGCAGCCATCGGAGA 244 * ******* consensus_14944#2 TGTTTTAGTGAAGCCATGGCTGCCGCTTCCCCTCGGCCTCAAGCCACC-GTCGCTGG-AC 263 consensus_14944#3 TGTGTTAGTGAACCCATGCTGTCCGCTTCCCTC--GCCTCAAGCCACCCGTCGTTGGTAC 68 consensus_14944#0 TGTTTTAGTGAAGCCATGGCTGCCGCTTCCCCTCGGCCTCAAGCCACC-GTCGCTGG-AC 1198 consensus_14944#1 TGTTTTAGTGAAGCCATGGCTGCCGCTTCCCCTCGGCCTCAAGCCACC-GTCGCTGG-AC 302 *** ******** ***** ********* ************* **** *** ** consensus_14944#2 AGCGTCATGTT-TGAGCTGCACA-AGCAGGGCATCCCCAAGGTGCCACCGGCGGCGAGCG 321 consensus_14944#3 AGCGTCATGTTCTGATCTGCCCACACCCGGGCATCCCCAAGGT-CCACCGGCGGCGA-CG 126 consensus_14944#0 AGCGTCATGTC-TGAGCTGCACA-AGCAGGGCATCCCCAAGGTGCCACCGGCGGCGAGCG 1256 consensus_14944#1 AGCGTCATGTT-TGAGCTGCACA-AGCAGGGCATCCCCAAGGTGCCACCGGCGGCGAGCG 360 ********** *** **** ** * * *************** ************* ** consensus_14944#2 GTGCCGCCGGCTGATACACATCGATCACACCGATCGTCTCCTCCGCCGCCGGCGAAAAAA 381 consensus_14944#3 GTCCC-CCGGCTGATACACATCGATCACCCCGATCGTCTCCTCC-CCNCCGGCGAAAAAA 184 consensus_14944#0 GTGCCGCCGGCTGATACACATCGATCACACCGATCGTCTCCTCCGCCGCCGGCGAAAAAA 1316 consensus_14944#1 GTGCCGCCGGCTGATACACATCGATCACACCGATCGTTTCCTCCGCCGCCGGCGAAAAAA 420 ** ** ********************** ******** ****** ** ************ consensus_14944#2 AAAAAAACCTCTCCTCTCTGCTCCGGCCGGTCTCCAC-GGTGAGAAGAGGCAATGCAACC 440 consensus_14944#3 AAAAAAACCTCTCCTCTTTGCTCCGGCCGGTCTCCACCGATGAGAAGAGGCCATGCAACC 244 consensus_14944#0 AAAAAAACCTCTCCTCTCTGCTCCGGCCGGTCTCCAC-GATGAGAAGAGGCAATGCAACC 1375 consensus_14944#1 AAAAAAACCTCTCCTCTTTGCTCCGGCCGGTCTCCAC-GATGAGAAGAGGCAATGCAACC 479 ***************** ******************* * *********** ******** consensus_14944#2 CGTCGACTTGTCGTAGCTTCGTCAGTGTGAATTGATTCATCATGCATTCACCCAATGCGT 500 consensus_14944#3 CGTCGACTTGTCGTAGCTTCGTCNGTGTGAATTGATTCATCATGCATTCACCCCATGCGT 304 consensus_14944#0 CGTCGACTTGTCGTAGCTTCGTCAGTGTGAATTGATTCATCATGCATTCACCCAATGCGT 1435 consensus_14944#1 CGTCGACTTGTCGTAGCTTCGTCAGTGTGAATTGATTCATCATGCATTCACCCAATGCGT 539 *********************** ***************************** ****** consensus_14944#2 GTAGACGAGCTCGATGTGTAAACTAGCTAGTGTGTCTTGTGTGTTTGCATTGACATATCT 560 consensus_14944#3 GTAGACGAGCTCGATGTGTAAACTAGC--------------------------------- 331 consensus_14944#0 GTAGACGAGCTCGATGTGTAAACTAGCTAGTGTGTCTTGTGTGTTTGCATTGACATATCT 1495 consensus_14944#1 GTAGACGAGCTCGATGTGTAAACTAGCTAGTGTGTCTTGTGTGTTTGCATTGACATATCT 599 *************************** consensus_14944#2 GGGTTTTTGCTCTCATGGAATGTGCATGCAGAGACGATGCAGGCGACATGCATGCCTACC 620 consensus_14944#3 ------------------------------------------------------------ consensus_14944#0 GGGTTTTTGCTCTCATGGAATGTGCATGCAGAGACGATGCAGGCGACATGCATGCCTACC 1555 consensus_14944#1 GGGTTTTTGCTCTCATGGAATGTGCATGCAGAGACGATGCAGGCGACATGCATGCCTACC 659 consensus_14944#2 TGAGAGTTGCGTGTAAAATATAAAATGTTTTGAGATGGAACGTACACGGACTGCTATATA 680 consensus_14944#3 ------------------------------------------------------------ consensus_14944#0 TGAGAGTTGCGTGTAAAATATAAAATGTTTTGAGATGGAACGTACACGGACTGCTATATA 1615 consensus_14944#1 TGAGAGTTGGGTGTAAAATATAAAATGTTTTGAGATGGAACGTACACGGACTGCTATATA 719 consensus_14944#2 TATTTTGGACAGCTGGTAATTAAATGGAGAAATAACCAAGGAACTTCCCCTTACCAAAAA 740 consensus_14944#3 ------------------------------------------------------------ consensus_14944#0 TATTTTGGACAGCTGGTAATTAAATTGAGAAATAACCAAGGAACTTACACTTAAAAAAAA 1675 consensus_14944#1 TATTTTGGACAGCTGGTAATTAAGTTGAGAAATAACCAAGGAACTTACACTTATGGCTTA 779 consensus_14944#2 NTNNTTTNAAAANNAAAA-------------- 758 consensus_14944#3 -------------------------------- consensus_14944#0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1707 consensus_14944#1 AAAGGA-------------------------- 785 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||