These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14948#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 1208 fasta sequence [AAGCAAGCAAACAACAACAAAAACCACTTCTCGTGGGTAGAAGAGAGAGAGAGCGAGGCGATTTCGACCAAGAAGATGGCCGGGATCGTGGTGGTGTTCGACTTCGACAAGACGATCATCGACGTCGACAGCGACAACTGGGTCGTGGACGGGCTCGGCGCGACGGAGGAGTTCGAGCGGCTGCTGCCCACCATGCCGTGGAACACCCTCATGGACACCATGATGGGCGAGCTCCACGCGAGCGGCAAGTCGCTCGCCGACGTCGCGGGCGTGCTCAGGTCGGCGCCGCTCGACCCGCGCGTCGTCGCCGCCATCAAGGCCTGCTACGGCCTGGGCTGCGACCTCCGGATCCTCAGCGACGCCAACC-GCTTC-TTCATCGACACCATCCTCGACCACCACGGCCTCACGGGTTAC-TTCTCCGAGA-TCAACACCAACCCGAGCGCCGTCGACGCCGCCACCGGCCGCCTCCGCATCGCGCCGTACCACGACTTCCACGCCGGCCCGCACGGGTGCGGCCTCGGGATCTGCCCGCCCAACATGTGCAAGGG-CCAGGTGCTCGA-CCGCAT-CCGC-GCCTCCGCCGGCGCCGCCGGC-AAGAGGGTCATCTACCTCGGTGACGGCCGCGGCGACTACTGCCCG-TC-GCTCCGC-CT-CGGCCGCGACGACTT-CATGATGCCACG-CAGGGGCTTCCCCGTGTGGGAGCT-CATCTGCGAGGACCCGTCGCTGCTCCACGCGGAGGTGCACTCGTGGGCCGACGGCG-CCGAGATGGAGGAG-ACGCTGCTGCGGCTGGTCGGCAGGGTGCTCCTCGAGGAGAGGAACCTG-CCGCCGCTCGACTGCAAGCTCGAGTCGTTG-CCGGCCGTCGCCGTGCAGGACGGCATGCCCATGACGCTCCGGATCAAGAACTGATCAATGGCGGCGACGAACGTACGCATGATTTCGAGCGCGAAACGGCTAGCTCGAACAATGTGTGTGTGAGGATTGCGATACGGGTATAATTTTAACTATTGACTGATTTTTGCGCTACGCGTGATTGAGCCTGCGATTAGTAGAGGCTCATTGTATCTTGTCCGATCAATTGAAGTAAAACATTTGGCTTGGCTCTCTCTCTATGAGATGTAATCCATTTCTATTATCTTAAAAGAAAA-AAAGTAAAACATTCAGAAAAAAAGTAAAACATTCCTGACAAAAAATTGACTAGTCTGAATTTTGGCCTC] [+] EMBL AK061237 [AAGCAAGCAAACAACAACAAAAACCACTTCTCGTGGGTAGAAGAGAGAGAGAGCGAGGCGATTTCGACCAAGAAGATGGCCGGGATCGTGGTGGTGTTCGACTTCGACAAGACGATCATCGACGTCGACAGCGACAACTGGGTCGTGGACGGGCTCGGCACGACGGAGGAGTTCGAGCGGCTGCTGCCCACCATGCCGTGGAACACCCTCATGGACACCATGATGGGCGAGCTCCACGCGAGCGGCAAGTCGCTCGCCGACGTCGCGGGCGTGCTCAGGTCGGCGCCGCTCGACCCGCGCGTCGTCGCCGCCATCAAGGCCTGCTACGGCCTGGGCTGCGACCTCCGGATCCTCAGCGACGCCAACC GCTTC TTCATCGACACCATCCTCGACCACCACGGCCTCACGGGTTAC TTCTCCGAGA TCAACACCAACCCGAGCGCCGTCGACGCCGCCACCGGCCGCCTCCGCATCGCGCCGTACCACGACTTCCACGCCGGCCCGCACGGGTGCGGCCTCGGGATCTGCCCGCCCAACATGTGCAAGGG CCAGGTGCTCGA CCGCAT CCGC GCCTCCGCCGGCGCCGCCGGC AAGAGGGTCATCTACCTCGGTGACGGCCGCGGCGACTACTGCCCG TC GCTCCGC CT CGGCCGCGACGACTT CATGATGCCACG CAGGGGCTTCCCCGTGTGGGAGCT CATCTGCGAGGACCCGTCGCTGCTCCACGCGGAGGTGCACTCGTGGGCCGACGGCG CCGAGATGGAGGAG ACGCTGCTGCGGCTGGTCGGCAGGGTGCTCCTCGAGGAGAGGAACCTG CCGCCGCTCGACTGCAAGCTCGAGTCGTTG CCGGCCGTCGCCGTGCAGGACGGCATGCCCATGACGCTCCGGATCAAGAACTGATCAATGGCGGCGACGAACGTACGCATGATTTCGAGCGCGAAACGGCTAGCTCGAACAATGTGTGTGTGAGGATTGCGATACGGGTATAATTTTAACTATTGACTGATTTTTGCGCTACGCGTGATTGAGCCTGCGATTAGTAGAGGCTCATTGTATCTTGTCCGATCAATTGAAGTAAAAC ] [+] EMBL C73042 [ AACAACAACAAAAACCACTTCTCGTGGGTAGAAGAGAGAGAGAGCGAGGCGATTTCGACCAAGAAGATGGCCGGGATCGTGGTGGTGTTCGACTTCGACAAGACGATCATCGACGTCGACAGCGACAACTGGGTCGTGGACGGGCTCGGCGCGACGGAGGAGTTCGAGCGGCTGCTGCCCACCATGCCGTGGAACACCCTCATGGACACCATGATGGGCGAGCTCCACGCGAGCGGCAAGTCGCTCGCCGACGTCGCGGGCGTGCTCANGTCGGCG CGCTCGACCCGCGCGTCGTCGCCG CATCAAGGCCTGCTACGGCTTGGGCTGCGA CTCCGGATCCTCAGCGACG CAACG GTTTT TTAATTGANA CATCTTGGA CA CACGG CTTACGGGTAAT TTTTCCGA A TTAA AACAACCCng ] [+] EMBL AA754477 [ cgtcganAACAACAAAAA CACTTCCCGTGGGTANAAGAGAGANAGAGCGAGGCGATTTCGACCAAGAAGATGGCCGGGATCGTGGTGGTGTTCGACTTCGACAAGACGATCATCGACGTCGACAGCGACAACTGGGTCGTGGACGGGCTCGGCGCGACGGAGGAGTTCGAGCGGCTGCTGCCCACCATGCCGTGGAACACCCTCATGGACACCATGATGGGCGAGCTCCACGCGCGCGGCAAGTCGCTCTCCGACGTCGCGGGCGTGCTCAGGTCGGCGCCGCTCGACCCGCGCGTCGTCGCCGCCATCAAGGCCTNCTNCGGCCTCGGCTGCGACCTCCGGATCCTCAGCGACGCCAACC GCTTC TTCATCGACACCATCCTCGACCACCACGGCCTCACGGGTTAC TTCTCCGAGA TCAACACCAACCCGAGCGCCGTCGACGCCGCCACCGGCCGCCTCCGCATCGCGCCGTACCACGACTTCCACGCCGGCCCGCACGGGTGCGGGCTCCGGATCTGCCCGCCCAACATGTGCAAGGG CCAGGTGCTCGA CCGCAT CCGC GCCTCCGCCGGCGCCGCCGGG AAGAAGG ] [+] EMBL AU056963 [ ACAACAAAAACCACTTCTCGTGGGTAGAAGAGAGAGAGAGCGAGGCGATTTCGACCAAGAAGATGGCCGGGATCGTGGTGGTGTTCGACTTCGACAAGACGATCATCGACGTCGACAGCGACAACTGGGTCGTGGACGGGCTCGGCGCGACGGAGGAGTTCGAGCGGCTGCTGCCCACCATGCCGTGGAACACCCTCATGGACACCATGATGGGCGAGCTCCACGCGAGCGGCAAGTCGCTCGCCGACGTCGCGGGCGTGCTCAGGTCGGCGCCGCTCGACCCGCGCGTCGTCGCCGCCATCAAGGCCTGCTACGGCCTGGGCTGCGACCTCCGGATCCTCAGCGACGCCAACN GCTTCTTTCATCGACACCATCCTCGACCACCACGGCCTCACGGGTTAC TTCTCCGAGATTCAACACCAACCCGAGCGCCGTCGACGCCGCCACCGGCCGCCTCCGCATNGCGCCGTACCACGACTTCCACGCCGGCCCGCACGGGTGCGGCCTCGGGATCTGCCCGCCCAACATGTGCAAGGG CCAGGTGCTCGA CCGCAT CCGCGGCTTCCGCCGGNGCCGCCGGCAAAGAGGGTCATCTACCTCGGTGACGGCCGCGGCGACTAATGCCCG TCGGTTCCGCNTT CGG CGCGACGACTT CATGATGCAACG CAGGGGGTTNCCCGTGTGGGAACT CA ] [+] EMBL C74865 [ ACTTCTCGTGGGTAGAAGAGAGAGAGAGCGAGGCGATTTCGACCAAGAAGATGGCCGGGATCGTGGTGGTGTTCGACTTCGACAAGACGATCATCGACGTCGACAGCGACAACTGGGTCGTGGACGGGCTCGGCGCGACGGAGGAGTTCGAGCGGCTGCTGCCCACCATGCCGTGGAACACCCTCATGGACACCATGATGGGCGAGCTCCACGCGAGCGGCAAGTCGCTCGCCGACGTCGCGGGCGTGCTCAGGTCGGCGCCGCTCGACCCGCGCGTCGTCGCCGCCATCAAGGCCTGCTACGGCCTGGGCTGCGACTNCCGGATCCTCAGCGANGCCAACCGGTTTT TTAATCG ] [+] EMBL CB619297 [ CTTCTCGTGGGTAGAAGAGAGAGAGAGCGAGGCGATTTCGACCAAGAAGATGGCCGGGATCGTGGTGGTGTTCGACTTCGACAAGACGATCATCGACGTCGACAGCGACAACTGGGTCGTGGACGGGCTCGGCGCGACGGAGGAGTTCGAGCGGCTGCTGCCCACCATGCCGTGGAACACCCTCATGGACACCATGATGGGCGAGCTCCACGCGCGCGGCAAGTCGCTCTCCGACGTCGCGGGCGTGCTCAGGTCGGCGCCGCTCGACCCGCGCGTCGTCGCCGCCATCAAGGCCTGCTACGGCCTCGGCTGCGACCTCCGGATCCTCAGCGACGCCAACC GCTTC TTCATCGACACCATCCTCGACCACCACGGCCTCACGGGTTAC TTCTCCGAGA TCAACACCAACCCGAGCGCCGTCGACGCCGCCACCGGCCGCCTCCGCATCGCGCCGTACCACGACTTCCACGCCGGCCCGCACGGGTGCGGCCTCGGGATCTGCCCGCCCAACATGTGCAAGGG CCAGGTGCTCGA CCGCAT CCGC GCCTCCGCCGGCGCCGCCGGC AAGAGGGTCATCTACCTCGGCGACGGCCGCGGCGACTACTGCCCG TC GCTCCGC CT CGGCCGCGACGACTT CATGATGCCACG CAGGGGCTTCCCCGTGTGGGAGCT CATCTGCGAGGACCCGTCGCTGCTCCAAGCGGAGGTGCACCCGTGG ] [-] EMBL CB967037 [ CCTCG CCACCACGGCCTCACGG TACTTTCTCCGAGA TCAACACCAACCCGGGCGCTGTCGACGCCGCCACCGCCCGCCTCCGCATCGCGCCGTACCACGACTTCCACGCCGGCCCGCACGGGTGCGGCCTCGGGATCTGCCCGCCCAACATGTGCAAGGG CCAGGTGCTCGA CCGCAT CCGC GCCTCCGCCGGCGCCGCCGGC AAGAGGGTCATCTACCTCGGCGACGGCCGCGGCGACTACTGCCCG TC GCTCCGC CT CGGCCGCGACGACTT CATGATGCCACG CAGGGGCTTCCCCGTGTGGGAGCT CATCTGCGAGGACCCGTCGCTGCTCCAAGCGGAGGTGCACCCGTGGGCCGACGGCG CCGAGATGGAGGAG ACGCTGCTGCGGCTGGTCGGCAGGGTGCTCCTCGAGGAGAGGAACCTG CCGCCGCTCGACTGCAAGCTCGAGTCGTTG CCGGCCGTCGCCGTGCAGGACGGCATGCCCATGACGCTCCGGATCAAGAACTGATCAATGGCGGCGACGAACGTACGCATGATTTCGAGCGCGAAACGGCTAGCTCGAACAATGTGTGTGTGAGGATTGCGATACGGGTATAATTTTAACTATTGACTGATTTTTGCGCTACGCGTGATTGACCCTGCGATTAGTAGAGTCTCATTGTATCTCCTCCGATCAAGTGAAGTACAACATTTGG ] [-] EMBL CB619298 [ GCACGGGTGCGGCCTCGGGATCTGCCCGCCCAACATGTGCAAGGG CCAGGTGCTCGA CCGCAT CCGC GCCTCCGCCGGCGCCGCCGGC AAGAGGGTCATCTACCTCGGCGACGGCCGCGGCGACTACTGCCCG TC GCTCCGC CT CGGCCGCGACGACTT CATGATGCCACG CAGGGGCTTCCCCGTGTGGGAGCT CATCTGCGAGGACCCGTCGCTGCTCCAAGCGGAGGTGCACCCGTGGGCCGACGGCG CCGAGATGGAGGAG ACGCTGCTGCGGCTGGTCGGCAGGGTGCTCCTCGAGGAGAGGAACCTG CCGCCGCTCGACTGCAAGCTCGAGTCGTTG CCGGCCGTCGCCGTGCAGGACGGCATGCCCATGACGCTCCGGATCAAGAACTGATCAATGGCGGCGACGAACGTACGCATGATTTCGAGCGCGAAACGGCTAGCTCGAACAATGTGTGTGTGAGGATTGCGATACGGGTATAATTTTAACTATTGACTGATTTTTGCGCTACGCGTGATTGAGCCTGCGATTAGTAGAGGCTCATTGTATCTTGTCCGATCAATTGAAGTAAAACATTTGGCTTGGCTCTCTCTCTATGAGATGTAATCCATTTCTATTATCTTAAAAGAAAAGAAAGTAAAACATTCAGAAAAAAAGTAAAAaaaaaga ] [+] EMBL AU056964 [ tcCCCGCCCAACATTTGCAAGGGCCCAGNTGCTCGACCCGCATCCCGC GCTTCCCGCGGCGCCGCCGGC AAGAGGGTCATCTACNTCGGTGACGGCCGCGGCGACTACTGCCCGTTC GCTCCGC CT CGGCCGCGACGACTT CATGATNCCACG CAGGGGCTTCCCCGTGTGGGAGCTCCATCTGCGAGGACCCGTCGCTGCTCCACGCGGAGGTGCACTCGTGGNCCGACGGCGCCCGAGATGGAGGAGAACGCTGCTGCGGCTGGTCGGCAGGGTGCTCCTCGAGGAGAGGAACCTGCCCGCCGCTCGACTGCAAGCTCGAGTCGTTGCCCGGCCGTCGCCGTGCAGGACGGCATGCCTATGACGCTCCGGATCAAGAACTGATCAATGGCGGCGACGAACGTACGCATGATTTCGAGCGCGAAACGGCTAGCTCGAACAATGTGTGTGTGAGGATTGCGATACGGGTATAATTTTAACTATTGACTGA TTTTNTGCTACGCGTGATTGAGCCTGCGATTAGTAGAGGCTCATTGTATCTTGTCCGATCAATTGAAGTAAAACATTTGGCTTGGCTCaaaaaaaaa ] [+] EMBL AU094124 [ CCG TC G TCCGC TTCCGGCTGCGACGACTTNCATGATGCCACGTCAGGGGCTTCCCCGTGTGGGAGCT CATCTGCGAGGACCCGTCGCTGCTCNACGCGGAGGTGCAATCGTGGGCCGACGGCG CCGAGATGGAGGAG ACGCTGCTGCGGCTGGTCGGCAGGGTGCTCCTCGAGGAGAGGANCCTG CCGCCGCTCGACTGNAAGCTCGAGTCGTTG CCGGCCGTCGCCGTGCAGGACNGCATGCCCATGACGCTCCGGATCAAGAACTGATCAATGGCGGCGACGAACGTACGCATGATTTCGAGCGCGAAACGGCTAGCTCGAACAATGTGTGTGTGAGGATTGCGATACGGGTATAATTTTAACTATTGACTGA TTTTNTGCTACGCGTGATTGAGCCTGCGATTAGTAGAGGCTCATTGTATCTTGTCCGATCAATTGAAGTAAAACATTTGGCTaaaaaa ] [+] EMBL AU225649 [ GCCGCTACGACTT CATGATGCCACG CAGGGGCTTCCCCGTGTGGGAGCT CATCTGCGAGGACCCGTCGCTGCTCCACGCGGAGGTGCACTCGTGGGCCGACGGCG CCGAGATGGAGGAG ACGCTGCTGCGGCTGGTCGGCAGGGTGCTCCTCGAGGAGAGGAACCTG CCGCCGCTCGACTGCAAGCTCGAGTCGTTG CCGGCCGTCGCCGTGCAGGACGGCATGCCCATGACGCTCCGGATCAAGAACTGATCAATGGCGGCGACGAACGTACGCATGATTTCGAGCGCGAAACGGCTAGCTCGAACAATGTGTGTGTGAGGATTGCGATACGGGTATAATTTTAACTATCGACTGATATTTGCGCTACGCGTGATTGAGCCTGCGATTAGTAGAGGCTCATTGTATCTTGTCCGATCAATTGAAGTAAAA ATTTGGCTGGGCTCTCTCTCTATGAGATGTAAT ] [+] EMBL AU173344 [ CGGCG CCGAGATGGAGGAG ACGCTGCTGCGGCTGGTCGGCAGGGTGCTCCTCGAGGAGAGGAACCTG CCGCCGCTCGACTGCAAGCTCGAGTCGTTG CCGGCCGTCGCCGTGCAGGACGGCATGCCCATGACGCTCCGGATCAAGAACTGATCAATGGCGGCGACGAACGTACGCATGATTTCGAGCGCGAAACGGCTAGCTCGAACAATGTGTGTGTGAGGATTGCGATACGGGTATAATTTTAACTATTGACTGATTTTTGCGCTACGCGTGATTGAGCCTGCGATTAGTAGAGGCTCATTGTATCTTGTCCGATCAATTGAAGTAAAACATTTGGCTTGGCTCTCTCTCTATGAGATGTAATCCATTTCTATTATCTTAAAAGAAAA AAAGTAAAACATTCAGAAAAAAAGTAAAACATTCCTGACAAAAAA ] [+] EMBL BU673235 [ gCGGCA GGTGCTCCTCGAGGAGAGGAACC G CCGCCGCTCGACTGCAAGCTCGAGTCG TG CCGGCCGTCGCCG GCAGGACGGCATGCCCATGACGCTCCGGATCAAGAACTGATCAA GGCGGCGACGAACGTACGCATGATTTCGAGCGCGAAACGGCTAGCTCGAACAATGTGTGTGTGAGGATTGCGATACGGGTATAATTTTAACTATTGACTGATTTTTGCGCTACGCGTGATTGAGCCTGCGATTAGTAGAGGCTCATTGTATCTTGTCCGATCAATTGAAGTAAAACATTTGGCTTGGCTCTCTCTCTATGAGATGTAATCCATTTCTATTATCTTAAAAAAAAA AAAGTAAAACATTCAGAAAAAAAGTAAAACATTCCTGACAGTGAATTGACTAGTCTGAATTTTGGCCTC] consensusID : consensus_14948#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 458 fasta sequence [CANAAGCAGGNAGGNNGGGNGGACTTCGGATCTTAGGAAGCANCGTTTTTTNTTGANACATCTTNGACACCAGGCTCAGGGTAATTTTTCNGAGATAAAACAAACCCGAGGCGTTGAAGCCGCCACCGGCCGCTTCCGCATCGCGCNGTACCACGAATTTCCAACGCCGGCCCGCACGGGTGCGGCNTCGGGATCTGCCCGCCCAACATGTGCAAGGGCCAGGTGCTCGACCGCATCCGCGCCTCCGCCGGCGCCGCCGGCAAGAGGGTCATCTACCTCGGTGACGGCCGCGGCGACTACTGCCCGTCGCTCCGCCTCGGCCGCGACGACTTCATGATGCCACGCAGGGGCTTCCCCGTGTGGGAGCTCATCTGCGAGGACCCGTCGCTGCTCCACGCGGAGGTGCACTCGTGGGCCGACGGCGCCGAGATGGAGGAGACGCTGCTGCGGCTGGTCGG] [+] EMBL AA753900 [CANAAGCAGGNAGGNNGGGNGGACTTCGGATCTTAGGAAGCANCGTTTTTTNTTGANACATCTTNGACACCAGGCTCAGGGTAATTTTTCNGAGATAAAACAAACCCGAGGCGTTGAAGCCGCCACCGGCCGCTTCCGCATCGCGCNGTACCACGAATTTCCAACGCCGGCCCGCACGGGTGCGGCNTCGGGATCTGCCCGCCCAACATGTGCAAGGGCCAGGTGCTCGACCGCATCCGCGCCTCCGCCGGCGCCGCCGGCAAGAGGGTCATCTACCTCGGTGACGGCCGCGGCGACTACTGCCCGTCGCTCCGCCTCGGCCGCGACGACTTCATGATGCCACGCAGGGGCTTCCCCGTGTGGGAGCTCATCTGCGAGGACCCGTCGCTGCTCCACGCGGAGGTGCACTCGTGGGCCGACGGCGCCGAGATGGAGGAGACGCTGCTGCGGCTGGTCGG] consensusID : consensus_14948#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 433 fasta sequence [CCTCATAAGGGAATAGCTG-GGCCGGCGGCA-GGTGCTCCTCGAGGAGAGGAACCTGCCGCCGCTCGACTGCAAGCTCGAGTCGTTGCCGGCCGTCGCCGTGCAGGACGGCATGCCCATGACGCTCCGGATCAAGAACTGATCAATGGCGGCGACGAACGTACGCATGATTTCGAGCGCGAAACGGCTAGCTCGAACAATGTGTGTGTGAGGATTGCGATACGGGTATAATTTTAACTATTGACTGATTTTTGCGCTACGCGTGATTGAGCCTGCGATTAGTAGAGGCTCATTGTATCTTGTCCGATCAATTGAAGTAAAACATTTGGCTTGGCTCTCTCTCTATGAGATGTAATCCATTTCTATTATCTTAAAAAAAAAAAAGTAAAACATTCAGAAAAAAAGTAAAACATTCCTGACAGTGAATTGACTAGTC] [+] EMBL BU673395 [CCTCATAAGGGAATAGCTG GGCCGGCGGCA GGTGCTCCTCGAGGAGAGGAACCTGCCGCCGCTCGACTGCAAGCTCGAGTCGTTGCCGGCCGTCGCCGTGCAGGACGGCATGCCCATGACGCTCCGGATCAAGAACTGATCAATGGCGGCGACGAACGTACGCATGATTTCGAGCGCGAAACGGCTAGCTCGAACAATGTGTGTGTGAGGATTGCGATACGGGTATAATTTTAACTATTGACTGATTTTTGCGCTACGCGTGATTGAGCCTGCGATTAGTAGAGGCTCATTGTATCTTGTCCGATCAATTGAAGTAAAACATTTGGCTTGGCTCTCTCTCTATGAGATGTAATCCATTTCTATTATCTTAAAAAAAAAAAAGTAAAACATTCAGAAAAAAAGTAAAACATTCCTGACAGTGAATTGACTAGTC] [+] EMBL CB964815 [ GGGAATACTTGCGGCGGCCGGCAGGGTGCTCCTCGAGGAGAGGAA CTGCCGCCGCTCGACTGCAAGCTCGAGTCGTTGCCGGCCGTCGCCGTGCAGGACGGCATGCCCATGACGCTCCGGATCAAGAACTGATCAATGGCGGCGACGAACGTACGCATGATTTCGAGCGCGAAACGGCTAGCTCGAACAATGTGTGTGTGAGGATTGCGATACGGGTATAATTTTAACTATTGACTGATTTTTGCGCTACGCGTGATTGAGCCTGCGATTAGTAGAGGCTCATTGTATCTTGTCCGATCAATTGAAGTAAAACATTTGGCTTGGCTCTCTCTCTATGAGATGTAATCCATTTCTATTATCTTAAAAAAAAAAAAGTAAAACATTCAGAAAAAAAGTAAAACATTCCTGACAGTGAATTGACTAGTC] consensusID : consensus_14948#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 412 fasta sequence [GGTGCTCCTCGAGGAGAGGAACCTGCCGCCGCTCGACTGCAAGCTCGAGTCGTTGCCGGCCGTCGCCGTGCAGGACGGCATGCCCATGACGCTCCGGCATAAGAACTGATCAATGGCGGCGACGCACGTACGCATGATTTCGCAGCGCGAAACGGCTAGCTCGCAACAATGTGTGTGTGAGGATTGCGATACGGGTATAATTTTAACTATTGACTGATTTTTGCGCTCACGCGTGCATTGCAGCCTGCGCATTCAGTCAGCAGGCTCATTGTCATCTTGTCCGGCATCAATTGCAAGTCAAAACATTTGGCTTGGCTCTCTCTCATCATGCAGCATGTAATCCCATTTCTCATACATCTTAAACACAAAAACACACAGTCACACAACCATCAGCACAAAAAAGTCAAAACCA] [+] EMBL CB965425 [GGTGCTCCTCGAGGAGAGGAACCTGCCGCCGCTCGACTGCAAGCTCGAGTCGTTGCCGGCCGTCGCCGTGCAGGACGGCATGCCCATGACGCTCCGGCATAAGAACTGATCAATGGCGGCGACGCACGTACGCATGATTTCGCAGCGCGAAACGGCTAGCTCGCAACAATGTGTGTGTGAGGATTGCGATACGGGTATAATTTTAACTATTGACTGATTTTTGCGCTCACGCGTGCATTGCAGCCTGCGCATTCAGTCAGCAGGCTCATTGTCATCTTGTCCGGCATCAATTGCAAGTCAAAACATTTGGCTTGGCTCTCTCTCATCATGCAGCATGTAATCCCATTTCTCATACATCTTAAACACAAAAACACACAGTCACACAACCATCAGCACAAAAAAGTCAAAACCA] consensusID : consensus_14948#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 368 fasta sequence [CCACTTCTCGTGGGTAGAAGAGAGAGAGAGCGAGGCGATTTCGACCAAGAAGATGGCCGGGATCGTGGTGGTGTTCGACTTCGACAAGACGATCATCGACGTCGACAGCGACAACTGGGTCGTGGACGGGCTNGGCGCGACGGAGGAGTTCGAGCGGCTGCTGCCCACCATGCCGTGGAACACCCTCATGGACACCATGATGGGCGAGCTCNACGCGAGCGGCAAGTCGCTCGTNGACGTCNGCGGGCCGTGCTCAGGNTCCGNCGNCNGNTCGANCCGNGATTTNGTCGCCGCCATCAAGGNCTGCTACGGCCTTGGGCTGCGACCTCCGGGATCCCTCAGCGACGCCAACCCGNTTNTTTCATTCG] [+] EMBL OSR23062A [CCACTTCTCGTGGGTAGAAGAGAGAGAGAGCGAGGCGATTTCGACCAAGAAGATGGCCGGGATCGTGGTGGTGTTCGACTTCGACAAGACGATCATCGACGTCGACAGCGACAACTGGGTCGTGGACGGGCTNGGCGCGACGGAGGAGTTCGAGCGGCTGCTGCCCACCATGCCGTGGAACACCCTCATGGACACCATGATGGGCGAGCTCNACGCGAGCGGCAAGTCGCTCGTNGACGTCNGCGGGCCGTGCTCAGGNTCCGNCGNCNGNTCGANCCGNGATTTNGTCGCCGCCATCAAGGNCTGCTACGGCCTTGGGCTGCGACCTCCGGGATCCCTCAGCGACGCCAACCCGNTTNTTTCATTCG] consensusID : consensus_14948#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 352 fasta sequence [AACAAAAACCACTTCTCGTGGGTACAACACACACACACCCACGCCATTTCCACCAACAACATGGCCGGGATCGTGGTGGTGTTCGACTTCCACAACACCATCATCCACCTCCACAGCGACAACTGGGTCGTGGACGGGCTCGGCGCGACCGAGAGTTCGAGCGGCTGCTGCCCACCATGCCGTGGAACACCCTCATGGACACCATGATGGGCGAGCTCCACGCGAGCGGCAAGTCCTCGCCGACGTCCCGGGCGTGCTCAGGTCGGCGCCGCTCGACCCGCGCGTCTCCCCGCCATCAGGGCCTTGCTACGGCCTTGGGCTGCCACTTCCGGATCCTTCAGCGGCCCANCCG] [+] EMBL AA754093 [AACAAAAACCACTTCTCGTGGGTACAACACACACACACCCACGCCATTTCCACCAACAACATGGCCGGGATCGTGGTGGTGTTCGACTTCCACAACACCATCATCCACCTCCACAGCGACAACTGGGTCGTGGACGGGCTCGGCGCGACCGAGAGTTCGAGCGGCTGCTGCCCACCATGCCGTGGAACACCCTCATGGACACCATGATGGGCGAGCTCCACGCGAGCGGCAAGTCCTCGCCGACGTCCCGGGCGTGCTCAGGTCGGCGCCGCTCGACCCGCGCGTCTCCCCGCCATCAGGGCCTTGCTACGGCCTTGGGCTGCCACTTCCGGATCCTTCAGCGGCCCANCCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14948#4 ------------------------------------------------------------ consensus_14948#5 ------------------------------------------------------------ consensus_14948#1 ------------------------------------------------------------ consensus_14948#0 AAGCAAGCAAACAACAACAAAAACCACTTCTCGTGGGTAGAAGAGAGAGAGAGCGAGGCG 60 consensus_14948#2 ------------------------------------------------------------ consensus_14948#3 ------------------------------------------------------------ consensus_14948#4 ------------------------------------------------------------ consensus_14948#5 ------------------------------------------------------------ consensus_14948#1 ------------------------------------------------------------ consensus_14948#0 ATTTCGACCAAGAAGATGGCCGGGATCGTGGTGGTGTTCGACTTCGACAAGACGATCATC 120 consensus_14948#2 ------------------------------------------------------------ consensus_14948#3 ------------------------------------------------------------ consensus_14948#4 ------------------------------------------------------------ consensus_14948#5 ------------------------------------------------------------ consensus_14948#1 ------------------------------------------------------------ consensus_14948#0 GACGTCGACAGCGACAACTGGGTCGTGGACGGGCTCGGCGCGACGGAGGAGTTCGAGCGG 180 consensus_14948#2 ------------------------------------------------------------ consensus_14948#3 ------------------------------------------------------------ consensus_14948#4 ------------------------------------------------------------ consensus_14948#5 ------------------------------------------------------------ consensus_14948#1 ------------------------------------------------------------ consensus_14948#0 CTGCTGCCCACCATGCCGTGGAACACCCTCATGGACACCATGATGGGCGAGCTCCACGCG 240 consensus_14948#2 ------------------------------------------------------------ consensus_14948#3 ------------------------------------------------------------ consensus_14948#4 ------------------------------------------------------------ consensus_14948#5 ------------------------------------------------------------ consensus_14948#1 ------------------------------------------------------------ consensus_14948#0 AGCGGCAAGTCGCTCGCCGACGTCGCGGGCGTGCTCAGGTCGGCGCCGCTCGACCCGCGC 300 consensus_14948#2 ------------------------------------------------------------ consensus_14948#3 ------------------------------------------------------------ consensus_14948#4 ------------------------------------------------------------ consensus_14948#5 -----------------------------------------------------AACAAAA 7 consensus_14948#1 -------------------CANAAGCAGGNAGGNNGGGNGGACTTCGGATCTTAGGAAGC 41 consensus_14948#0 GTCGTCGCCGCCATCAAGGCCTGCTACGGCCTGGGCTGCGACCTCCGGATCCTCAGCGAC 360 consensus_14948#2 ------------------------------------------------CCTCATAAGGGA 12 consensus_14948#3 ------------------------------------------------------------ consensus_14948#4 -CCA-----CTTCTCGTGGGTAG-AAGAGAGAGA------GAGCGA-GGCGATTTCGACC 46 consensus_14948#5 ACCA-----CTTCTCGTGGGTAC-AACACACACA------CACCCA-CGCCATTTCCACC 54 consensus_14948#1 ANCG-----TTTTTTNTTGANAC-ATCTTNGACACC---AGGCTCA-GGGTAATTTTTCN 91 consensus_14948#0 GCCAACCGCTTCTTCATCGACACCATCCTCGACCACCACGGCCTCACGGGTTACTTCTCC 420 consensus_14948#2 ATAGCTGGGCCGGCGGCAGGTGCTCCTCGAGGAGAG---GAACCTGCCGCCGCTCGACTG 69 consensus_14948#3 ------------------GGTGCTCCTCGAGGAGAG---GAACCTGCCGCCGCTCGACTG 39 * * consensus_14948#4 AAGAAGATGGCCGGGATC-GTGGT-GGTGT--TCGACTTCGACAAGACGATCATCGACGT 102 consensus_14948#5 AACAACATGGCCGGGATC-GTGGT-GGTGT--TCGACTTCCACAACACCATCATCCACCT 110 consensus_14948#1 GAGATAA--AACAAACCC-GAGGC-GTTGAAGCCGCCACCGGCCGCTTCCGCATCGCGCN 147 consensus_14948#0 GAGATCAACACCAACCCGAGCGCC-GTCGACGCCGCCACCGGCCGCCTCCGCATCGCGCC 479 consensus_14948#2 CAAGCTCGAGTCGTTGCCGGCCGTCGCCGTGCAGGACGGCATGCCCATGACGCTCCGGAT 129 consensus_14948#3 CAAGCTCGAGTCGTTGCCGGCCGTCGCCGTGCAGGACGGCATGCCCATGACGCTCCGGCA 99 * * * * * * * * ** consensus_14948#4 CGACAGCGACAACTGGGTCGTGGACGGGCTNGGCGCGACGGAGGAGTTCGAG-CGGCTGC 161 consensus_14948#5 CCACAGCGACAACTGGGTCGTGGACGGGCTCGGCGCGACCGAG-AGTTCGAG-CGGCTGC 168 consensus_14948#1 GTACCACGAATTTCCAACGCCGGCCCGCACGGGTGCGGCNTCGGGATCTGCC-CGCCCAA 206 consensus_14948#0 GTACCACGACTTCC--ACGCCGGCCCGCACGGGTGCGGCCTCGGGATCTGCC-CGCCCAA 536 consensus_14948#2 CAAGAACTGATCAATGGCGGCGACGAACGTACGCATGATTTCG-AGCGCGAAACGGCTAG 188 consensus_14948#3 TAAGAACTGATCAATGGCGGCGACGCACGTACGCATGATTTCGCAGCGCGAAACGGCTAG 159 * * * * * * * ** * consensus_14948#4 TGCCCACCATGCCGTG---GAACAC--CCTCATGGACACCATGATGGGCGA-GCTCNACG 215 consensus_14948#5 TGCCCACCATGCCGTG---GAACAC--CCTCATGGACACCATGATGGGCGA-GCTCCACG 222 consensus_14948#1 CATGTGCAAGGGCCAG---GTGCTCGACCGCATCCGCGCCTCCGCCGGCGC-CGCCGGCA 262 consensus_14948#0 CATGTGCAAGGGCCAG---GTGCTCGACCGCATCCGCGCCTCCGCCGGCGC-CGCCGGCA 592 consensus_14948#2 CTCG-AACAATGTGTGTGTGAGGATTGCGATACGGGTATAATTTTAACTATTGACTGATT 247 consensus_14948#3 CTCGCAACAATGTGTGTGTGAGGATTGCGATACGGGTATAATTTTAACTATTGACTGATT 219 * * * * * consensus_14948#4 CGAGCGGCAAGTCGCTCGTNGACGTCNGCGGGCCGTGCTCA-GGNTCCGNCGNCNGNTCG 274 consensus_14948#5 CGAGCGGCAAGTC-CTCGCCGACGTCC-CGGGC-GTGCTCA-GGT--CGGCGCCG-CTCG 275 consensus_14948#1 AGAGGGTCATCTACCTCGGTGACGGCCGCGGCGACTACT---GCCCGTCGCTCCGCCTCG 319 consensus_14948#0 AGAGGGTCATCTACCTCGGTGACGGCCGCGGCGACTACT---GCCCGTCGCTCCGCCTCG 649 consensus_14948#2 TTTGCGCT-ACGCGTG-ATTG-AGCCTGCGA--TTAGTAG--AGGCTCATTGT-ATCTTG 299 consensus_14948#3 TTTGCGCTCACGCGTGCATTGCAGCCTGCGCATTCAGTCAGCAGGCTCATTGTCATCTTG 279 * * * * * ** * * consensus_14948#4 ANC--CGNGATTTNGTCGCCGCCAT-CAAGGNCT-GCTACGGCCT----TGGGCTGCGAC 326 consensus_14948#5 ACC--CGCG--CGTCTCCCCGCCAT-CAGGGCCTTGCTACGGCCT----TGGGCTGCCAC 326 consensus_14948#1 GCCG-CGACGACTTCATGATGCCACGCAGGGGCT--TCCCCGTGT----GGGAGCTCATC 372 consensus_14948#0 GCCG-CGACGACTTCATGATGCCACGCAGGGGCT--TCCCCGTGT----GGGAGCTCATC 702 consensus_14948#2 TCCG--ATCAATTG-AAGT-AAAACATTTGGCTTGGCTCTCTCTC----TATGAGATGTA 351 consensus_14948#3 TCCGGCATCAATTGCAAGTCAAAACATTTGGCTTGGCTCTCTCTCATCATGCAGCATGTA 339 * * ** * consensus_14948#4 CTCCGGGATCCCTCAGCGACGCCAACCCGNTTNTTTCATTCG------------------ 368 consensus_14948#5 TTCCGG-ATCCTTCAGCG--GCCCANCCG------------------------------- 352 consensus_14948#1 TGCGAGGACCCGTCGCTG--CTCCACGCGGAGGTGCACTCGTGGGCCGACGGCGCCGAGA 430 consensus_14948#0 TGCGAGGACCCGTCGCTG--CTCCACGCGGAGGTGCACTCGTGGGCCGACGGCGCCGAGA 760 consensus_14948#2 ATCC-ATTTCTATTATCT---TAAAAAAAAAAAAGTAAAACATTCAGAAAAAAAGTAAAA 407 consensus_14948#3 ATCCCATTTCTCATACAT---CTTAAACACAAAAACACA-CAGTCACACAACCATCAGCA 395 * * * consensus_14948#4 ------------------------------------------------------------ consensus_14948#5 ------------------------------------------------------------ consensus_14948#1 TGGAGGAGACGCTGCTGCGGCTGGTCGG-------------------------------- 458 consensus_14948#0 TGGAGGAGACGCTGCTGCGGCTGGTCGGCAGGGTGCTCCTCGAGGAGAGGAACCTGCCGC 820 consensus_14948#2 CATTCCTGACAGTGAATTGACTAGTC---------------------------------- 433 consensus_14948#3 CAA----AAAAGTCAA--AACCA------------------------------------- 412 consensus_14948#4 ------------------------------------------------------------ consensus_14948#5 ------------------------------------------------------------ consensus_14948#1 ------------------------------------------------------------ consensus_14948#0 CGCTCGACTGCAAGCTCGAGTCGTTGCCGGCCGTCGCCGTGCAGGACGGCATGCCCATGA 880 consensus_14948#2 ------------------------------------------------------------ consensus_14948#3 ------------------------------------------------------------ consensus_14948#4 ------------------------------------------------------------ consensus_14948#5 ------------------------------------------------------------ consensus_14948#1 ------------------------------------------------------------ consensus_14948#0 CGCTCCGGATCAAGAACTGATCAATGGCGGCGACGAACGTACGCATGATTTCGAGCGCGA 940 consensus_14948#2 ------------------------------------------------------------ consensus_14948#3 ------------------------------------------------------------ consensus_14948#4 ------------------------------------------------------------ consensus_14948#5 ------------------------------------------------------------ consensus_14948#1 ------------------------------------------------------------ consensus_14948#0 AACGGCTAGCTCGAACAATGTGTGTGTGAGGATTGCGATACGGGTATAATTTTAACTATT 1000 consensus_14948#2 ------------------------------------------------------------ consensus_14948#3 ------------------------------------------------------------ consensus_14948#4 ------------------------------------------------------------ consensus_14948#5 ------------------------------------------------------------ consensus_14948#1 ------------------------------------------------------------ consensus_14948#0 GACTGATTTTTGCGCTACGCGTGATTGAGCCTGCGATTAGTAGAGGCTCATTGTATCTTG 1060 consensus_14948#2 ------------------------------------------------------------ consensus_14948#3 ------------------------------------------------------------ consensus_14948#4 ------------------------------------------------------------ consensus_14948#5 ------------------------------------------------------------ consensus_14948#1 ------------------------------------------------------------ consensus_14948#0 TCCGATCAATTGAAGTAAAACATTTGGCTTGGCTCTCTCTCTATGAGATGTAATCCATTT 1120 consensus_14948#2 ------------------------------------------------------------ consensus_14948#3 ------------------------------------------------------------ consensus_14948#4 ------------------------------------------------------------ consensus_14948#5 ------------------------------------------------------------ consensus_14948#1 ------------------------------------------------------------ consensus_14948#0 CTATTATCTTAAAAGAAAAAAAGTAAAACATTCAGAAAAAAAGTAAAACATTCCTGACAA 1180 consensus_14948#2 ------------------------------------------------------------ consensus_14948#3 ------------------------------------------------------------ consensus_14948#4 ---------------------------- consensus_14948#5 ---------------------------- consensus_14948#1 ---------------------------- consensus_14948#0 AAAATTGACTAGTCTGAATTTTGGCCTC 1208 consensus_14948#2 ---------------------------- consensus_14948#3 ---------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||