These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14976#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 707 fasta sequence [CACAACCCAACAACCTTCCACTGATCCACACACAGCCGCGAGGAGAGAGAAAGAGAGA-GGAGAGAGAGATGGCGGCGGAGCTGACGGCGGCGCAGCTGCGGGCGTACGACGGGAGCGACCCATCGAAGCCGATCTACGTCTCCGTCCGCGGCAAGGTCTACGACGTCACCTCCGGCCGCGGCTTCTACGGCCCCGGCGGCGCCTACGCCGTCTTCGCCGGCCGCGAGGCCAGC-CGCGCGCTCGGCAAGATGTCCAAGGACGACGCCGACGTCTCCGGCGACCTCTCCGGCCTCTCCGACAAGGAGCTCGGCGTCCTCGCCGACTGGGAGACCAAGTTCCAGGCCAAGTACCCCGTCGTCGCCCGCCTCACCGAATG--AAAAAAAAAAATCCCCCCAAATCAACCCTTAGATTATTGTATCCTCTTGTGCTCTACAGCTTAATTCCATCCGTAATTCCATGTGTAACTTATTATTACTTCTCCCTGTGTGTCAGTGTGTCTGTGCTTGCAGCTTTGCTCTCTGGTTGCTTGATTAGCTGCCCAATAATCTGAACAATAAGAAATCTGGGGAGTAATTTAAGTATTGGATTGTCTGGTCTTTCTTTTTTGTGATTGCCGCTTGATTTCTTGTGCCATAGGTTGTTCTTAATCTTGATCTGGGTATTCTTGTATAGAAGAAGCAATGTGCTGAATGCCTTGACCACAGAAA] [+] EMBL AK072423 [CACAACCCAACAACCTTCCACTGATCCACACACAGCCGCGAGGAGAGAGAAAGAGAGA GGAGAGAGAGATGGCGGCGGAGCTGACGGCGGCGCAGCTGCGGGCGTACGACGGGAGCGACCCATCGAAGCCGATCTACGTCTCCGTCCGCGGCAAGGTCTACGACGTCACCTCCGGCCGCGGCTTCTACGGCCCCGGCGGCGCCTACGCCGTCTTCGCCGGCCGTGAGGCCAGC CGCGCGCTCGGCAAGATGTCCAAGGACGACGCCGACGTCTCCGGCGACCTCTCCGGCCTCTCCGACAAGGAGCTCGGCGTCCTCGCCGACTGGGAGACCAAGTTCCAGGCCAAGTACCCCGTCGTCGCC ] [-] EMBL CB966667 [ ACCGTCCACTGATCCACACACAACCGCGAGGAGAGAGAAAGAGAGAGGGAGAGAGAGATGGCACCGGAGCTGACGGCGGCGCAGCTGCGGGCGTACGACGGGAGCGACCCATCGAAGCCGATCTACGTCTCCGTCCGCGGCAAGGTCTACGACGTCACCTCCGGCCGCGGCTTCTACGGCCCCGGCGGCGCCTACGCCGTCTTCGCCGGCCGCGAGGCCAGC CGCGCGCTCGGCAAGATGTCCAAGGACGACGCCGACGTCTCCGGCGACCTCTCCGGCCTCTCCGACAAGGAGCTCGGCGTCCTCGCCGACTGGGAGACCAAGTTCCAGGCCAAGTACCCCGTCGTCGCCCGCCTCACCGAATGAAAAAAAAAAAAATCCCCCCAAATCAACCCTTAGATTAT TATCCTCTTGTGCTCTACAGCTTAATTCCATCCGTAATTCCATGTGTAACTTATTATTACTTCTCCCTGTGTGTCAGTGTGTCTGTGCTTGCAGCTTTGCTCTCTGGTTGCTTGATTAGCTGCCCAATAATCTGAACAATAAGAAATCTGGGGAGTAATTTAAGTATTGGAT ] [+] EMBL C99059 [ CCGCTGATCCACACACANCCGCGAGGAGAGAGAAAGAGAGA GGAGAGAGAGATGGCGGCGGAGCTGACGGCGGCGCAGCTGCGGGCGTACGACGGGAGCGACCCATCGAAGCCGATCTACGTCTCCGTCCGCGGCAAGGTCTACGACGTCACTTCCGGCCGCGGCTTCTACGGCCCCGGCGGCGCCTACG CGTCTTCGCCGGCCGCGAGGCCAGC CGCGCGCTCGGCAAGATGTCCAAGGACGACGCCGACGTCTCCGGCGACCTCTCCGGCCTCTCCGACAAGGAGCTCGGCGTCCTCGCCGACTGGGAGACCAAGTTCCAGGCCAAGTACCCCGTCGTCGCCCGCCTCACCGAATG AAAAA ] [+] EMBL BP184557 [ TGATCCACACACAGCCGCGAGGAGAGAGAAAGAGAGA GGAGAGAGAGATGGCGGCGGAGCTGACGGCGGCGCAGCTGCGGGCGTACGACGGGAGCGACCCATCGAAGCCGATCTACGTCTCCGTCCGCGGCAAGGTCTACGACGTCACCTCCGGCCGCGGCTTCTACGGCCCCGGCGGCGCCTACGCCGTCTTCGCCGGCCGCGAGGCCAGC CGCGCGCTCGGCAAGATGTCCAAGGACGACGCCGACGTCTCCGGCGACCTCTCCGGCCTCTCCGACAAGGAGCTCGGCGTCCTCGCCGACTGGGAGACCAAGTTCCAGGCCAAGTACCCCGTCGTCGCCCGCCTCACCGAATG AAAAAAAAAAATCCCCCCAAATCAACCCTTAGATTATTGGATCCTCTTGTGCTCTACAGCTTAATTCCATCCGTAATTCCATGTGTAACTTATTATTACTTCTTCCTGTGTGTCAGTGTGTCTGTGCTTGCAGCTTTGCTCTCTGGTTGCTTGATTAGCTGCCCAATAATCTGAACAATAAGAAATCTGGGGAGTAATTTAAGTAaaaaa ] [+] EMBL AK062552 [ CCGCGAGGAGAGAGAAAGAGAGA GGAGAGAGAGATGGCGGCGGAGCTGACGGCGGCGCAGCTGCGGGCGTACGACGGGAGCGACCCATCGAAGCCGATCTACGTCTCCGTCCGCGGCAAGGTCTACGACGTCACCTCCGGCCGCGGCTTCTACGGCCCCGGCGGCGCCTACGCCGTCTTCGCCGGCCGCGAGGCCAGC CGCGCGCTCGGCAAGATGTCCAAGGACGACGCCGACGTCTCCGGCGACCTCTCCGGCCTCTCCGACAAGGAGCTCGGCGTCCTCGCCGACTGGGAGACCAAGTTCCAGGCCAAGTACCCCGTCGTCGCCCGCCTCACCGAATG AAAAAAAAAATCCCCCCAAATCAACCCTTAGATTATTGTATCCTCTTGTGCTCTACAGCTTAATTCCATCCGTAATTCCATGTGTAACTTATTATTACTTCTCCCTGTGTGTCAGTGTGTCTGTGCTTGCAGCTTTGCTCTCTGGTTGCTTGATTAGCTGCCCAATAATCTGAACAATAAGAAATCTGGGGAGTAATTTAAGTATTGGATTGTCTGGTCTTTCTTTTTTGTGATTGCCGCTTGATTTCTTGTGCCATAGGTTGTTCTTAATCTTGATCTGGGTATTCTTGTATAGAAGAAGCAATGTGCTGAATGCCTTGACCACAGAAA] [+] EMBL C74218 [ GCGANGAGAGAGAAAGAGAGA GGAGAGAGAGATGGCGGCGGA NTGACGGCGGCGCA NTGCGGGCGTACGACGGGAGCGACCCATCGAAGCCGATCTACGTCTCCGTCCGCGGCAAGGTCTACGACGTCACCTCCGGCCGCGGCTTCTACGGCCCCGGCGGCGCCTACG CGTCTTCGCCGGCCGCGA GNAAGCNCGCGCGCTCGGCAAGATGTCCAAGGACGACGCCGACGTCTCCGGCGACCTCTCCGGCCTCTCCGACAAGGAGCTCGGCGTCCTCG CGACTGGGAGACCAAGTTCCAGGCCAAGTA CCCGTCGTCG CCG CT ANCGAATG AAAAAAAAAT CCCCCAAAT AAACCTTAGA TATTGTAT CTCTTGTGCTCTANAG TTAATT CAT CGTAA ] [+] EMBL AU164008 [ CGAGGAGAGAGAAAGAGAGA GGAGAGAGAGATGGCGGCGGAGCTGACGGCGGCGCAGCTGCGGGCGTACGACGGGAGCGACCCATCGAAGCCGATCTACGTCTCCGTCCGCGGCAAGGTCTACGACGTCACCTCCGGCCGCGGCTTCTACGGCCCCGGCGGCGCCTACGCCGTCTTCGCCGGCCGCGAGGCCAGC CGCGCGCTCGGCAAGATGTCCAAGGACGACGCCGACGTCTCCGGCGACCTCTCCGGCCTCTCCGACAAGGAGCTCGGCGTCCTCGCCGACTGGGAGACCAAGTTCCAGGCCAAGTACCCCGTCGTCGCCCGCCTCACCGAATG AAAAAAAAAAATCCCCCCAAATCAACCCTTAGATTATTGTATCCTCTTGTGCTCTACAGCTTAATTCCATCCGTAATTCCATGTGTAACTTATTATTACTTCTCCCTGTGTGTCAGTGTGTCTGTGCTTGCAGCTTTGCTCTCTGGTTGCTTGATTAGCTGCCCAATAATCTGAACAATAAGAAATCTGGGGAGTAATTTAAGTATTGGATTGTCTGGTCaaaaaaaaa ] consensusID : consensus_14976#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 604 fasta sequence [AGAGAGAGATGGCGGCGGAGCTGACGGCGGCGCAGCTGCGGGCGTACGACGGGAGCGACCCATCGAAGCCGATCTACGTCTCCGTCCGCGGCAAGGTCTACGACGTCACCTCCGGCCGCGGCTTCTACGGCCCCGGCGGCGCCTACGCCGTCTTCGCCGGCCGCGAGGCCAG-CCGCGCGCTCGGCAAGATGTCCAAGGACGACGCCGACGTCTCCGGCGACCTCTCCGGCCTCTCCGACAAGGAGCTCGGCGTCCTCGCCGACTGGGAGACCAAGTTCCAGGCCAAGTACCCCGTCGTCGCCCGCCTCACCGAATGAAAAAAAAAAATCCCCCCAAATCAACCCTTAGATTATT-GTATCCTCTTGTGCTCTACAGCTTAATTCCATCCGTAATTCCATGTGTAACTTATTATTACTTCTCCCTGTGTGTCAGTGTGTCTGTGCTTGCAGCTTTGCTCTCTGGTTGCTTGATTAGCTGCCCAATAATCTGAACAATAAGAAATCTGGGGAGTAATTTAAGTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN] [+] EMBL CA758832 [AGAGAGAGATGGCGGCGGAGCTGACGGCGGCGCAGCTGCGGGCGTACGACGGGAGCGACCCATCGAAGCCGATCTACGTCTCCGTCCGCGGCAAGGTCTACGACGTCACCTCCGGCCGCGGCTTCTACGGCCCCGGCGGCGCCTACGCCGTCTTCGCCGGCCGCGAGGCCAG CCGCGCGCTCGGCAAGATGTCCAAGGACGACGCCGACGTCTCCGGCGACCTCTCCGGCCTCTCCGACAAGGAGCTCGGCGTCCTCGCCGACTGGGAGACCAAGTTCCAGGCCAAGTACCCCGTCGTCGCCCGCCTCACCGAATGAAAAAAAAAAATCCCCCCAAATCAACCCTTAGATTATT GTATCCTCTTGTGCTCTACAGCTTAATTCCATCCGTAATTCCATGTGTAACTTATTATTACTTCTCCCTGTGTGTCAGTGTGTCTGTGCTTGCAGCTTTGCTCTCTGGTTGCTTGATTAGCTGCCCAATAATCTGAACAATAAGAAATCTGGGGAGTAATTTAAGTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN] [+] EMBL C74031 [ CGGCGGA CTGACGGCGGCGCA NTGCGGGCGTACGACGGGAGCGACCCATCGAAGCCGATCTACGTCTCCGTCCGCGGCAAGGTCTACGACGTCACCTCCGGCCGCGGCTTCTACGGCCCCGGCGGCGCCTACG CGTCTTCGCCGGCCGCGA GNAAGCCCGCGCGCTCGGCAAGATGTCCAAAAACGACGCCGACGTCTCCGGCGACCTCTCCGGCCTCTCCGACAAGGAGCTCGGCGTCCTCG CGACTGGGAGACCAAGTTCCAGGCCAAGTACCCCGTCGTCGCCCGCCTCANCGAATGAAAAAAAAAAATCCCCCCAAATCAACCCTTAGATTATTGGTATCCTCTTGTGCTCTACAGCTTAATTCCATCCGTAATTCCATGTGTAA TTAATAATAATTCTCCCTGTGTGTCAGTGTG ] [+] EMBL CA999656 [ CGCCGTCTTCGCCGGCCGCGAGGCCAG CCGCGCGCTCGGCAAGATGTCCAAGGACGACGCCGACGTCTCCGGCGACCTCTCCGGCCTCTCCGACAAGGAGCTCGGCGTCCTCGCCGACTGGGAGACCAAGTTCCAGGCCAAGTACCCCGTCGTCGCCCGCCTCACCGAATGAAAAAAAAAAATCCCCCCAAATCAACCCTTAGATTATT GTATCCTCTTGTGCTCTACAGCTTAATTCCATCCGTAATTCCATGTGTAACTTATT ] consensusID : consensus_14976#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 595 fasta sequence [ACGAGCTCGTGCCGAATTCGGCACGAGGAGCTGACGGCGGCGCAGCTGCGGGCGTACGACGGGAGCGACCCATCNAAGCCGATCTACGTCTCCGTCCGCGGCAAGGTCTACGACNTCNCCTCCGGCCGCGGCTTCTACNGCCCCGGCGGCGCCTACGCCGTCTTCGCCGGCCGCGANGCCAGCCGCGCGCTCGGCAAGATGTCCNAGGACGACNCCGACGTCTCCGGCGACCTCTCCGGCCTCTCCGACAAGGAGCTCGGCGTCCTCGCCGACTGGGAGACCAAGTTCCAGGCCAAGTNCCCCGTCGTCNCCCGCCTCACCGAATGAAAAAAAAAAAATCCCCCCNAATCAACCCNTAGATTATTGTATCCTCTTGTGCTCTACAGCTTAATTCCATCCGTAATTCCATGTGTNACTTATTATTACTTCTCCCTGTGTGTCANTGTGTCTGTGCTTGCANCTTTGCTCTCTGGTTGCTTGATTANCTGCCCNATAATCTGAACAATAANAAATCTGGGGAGTAATTTAAGTATTGGATTGTCTGGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL BE228989 [ACGAGCTCGTGCCGAATTCGGCACGAGGAGCTGACGGCGGCGCAGCTGCGGGCGTACGACGGGAGCGACCCATCNAAGCCGATCTACGTCTCCGTCCGCGGCAAGGTCTACGACNTCNCCTCCGGCCGCGGCTTCTACNGCCCCGGCGGCGCCTACGCCGTCTTCGCCGGCCGCGANGCCAGCCGCGCGCTCGGCAAGATGTCCNAGGACGACNCCGACGTCTCCGGCGACCTCTCCGGCCTCTCCGACAAGGAGCTCGGCGTCCTCGCCGACTGGGAGACCAAGTTCCAGGCCAAGTNCCCCGTCGTCNCCCGCCTCACCGAATGAAAAAAAAAAAATCCCCCCNAATCAACCCNTAGATTATTGTATCCTCTTGTGCTCTACAGCTTAATTCCATCCGTAATTCCATGTGTNACTTATTATTACTTCTCCCTGTGTGTCANTGTGTCTGTGCTTGCANCTTTGCTCTCTGGTTGCTTGATTANCTGCCCNATAATCTGAACAATAANAAATCTGGGGAGTA ] [+] EMBL CF331751 [ CGTCGCCCGCCTCACCGAATG AAAAAAAAAAATCCCCCCAAATCAACCCTTAGATTATTGTATCCTCTTGTGCTCTACAGCTTAATTCCATCCGTAATTCCATGTGTAACTTATTATTACTTCTCTCTTTGTGTCAGTGTGTCTGTGCTTGCAGCTTTGCTCTCTGGTTGCTTGATTAGCTGCCCAATAATCTGAACAATAAGAAATCTGGGGAGTAATTTAAGTATTGGATTGTCTGGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_14976#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 560 fasta sequence [CGAGGAGAGAGAAAGAGAGAGGAGAGAGAGATGGCAGCGGAGCTGACGGCGGCGCAGCTGCGGGCGTACGACGGGAGCGACCCATCGAAGCCGATCT-ACGTCTCCGTCCGCGGCAAGGTCTACGACGTCACCTCCGGCCGCGGCTTCTACGG-CCCCGGCGGCGC-CTA-CGCCGTCTTCGCCGG-CCGCGAGG-CCAG-CCGCGCGC-TC-GGCAAGATGTCCAA-GGACGACGCCGACGTCTCCGGCGACC-TCTCCGGCCTCTCCGA-CAAGGAGCTCGGC-GTCCTCGCCGACTGGGAGAC-CAAGTTCCAGGCCA-AGTACCCCGTCGTCGCCCGCCTCACCGAATG--AAAAAAAAAAAATCCCCCCAAATCAACCCTTAGATTATTGTATC-CTCTTGTGCTCTAC-AGCTTAATTCCATCCGTAATTCCATGTGTAACTTATTATTACTTCTCCCTGTGTGTCAGTGTGTCTGTGCTTGCAGCTTTGCTCTCTGGTTGCTTGATTAGCTGCCCAATAATCTGAACAATAAGAAATCTGGGGAGTAATTTAAGTAAAAAAAAAAAAAAAAA] [+] EMBL BE040687 [CGAGGAGAGAGAAAGAGAGAGGAGAGAGAGATGGCAGCGGAGCTGACGGCGGCGCAGCTGCGGGCGTACGACGGGAGCGACCCATCGAAGCCGATCT ACGTCTCCGTCCGCGGCAAGGTCTACGACGTCACCTCCGGCCGCGGCTTCTACGG CCCCGGCGGCGC CTA CGCCGTCTTCGCCGG CCGCGAGG CCAG CCGCGCGC TC GGCAAGATGTCCAA GGACGACGCCGACGTCTCCGGCGACC TCTCCGGCCTCTCCGA CAAGGAGCTCGGC GTCCTCGCCGACTGGGAGAC CAAGTTCCAGGCCA AGTACCCCGTCGTCGCCCGCCTCACCGAATGAAAAAAAAAAAAAATCCCCCCAAATCAACCCTTAGATTATTGTATC CTCTTGTGCTCTAC AGCTTAATTCCATCCGTAATTCCATGTGTAACTTATTATTACTTCTCCCTGTGTGTCAGTGTGTCTGTGCTTGCAGCTTTGCTCTCTGGTTGCTTGATTAGCTGCCCAATAATCTGAACAATAAGAAATCTGGGGAGTAATTTAAGTAAAAAAAAAAAAA ] [+] EMBL AU029345 [ GCNTACGACGGGAGCGACCCATCGAAGCCGATCTAAAGTCTCANTCCGCGGCAAGGTCTACGACGTCACCTNCGGCCGCGGCTTCTACGGCCCCCGGCGGCGCTTTACCGCCGTTTTCGCCGGCCCGCGAGGNCCAGACCGCGCGCTTC GGNAAGATGTCCAAGGGACGACGCCGACGTCTCCGGCGACN TCTCCGGCNTCTCCGA CAAGGAGCTCGGC GTCCTCGCCGACTGGGAGAC CAAGTTCCAGGCCA AGTACCCCGTCGTCGCCCGCCTCACCGAATG AAAAAAAAAAATCCCCCCAAATCAACCCTTAGATTATTGTATC CTCTTGTGCTCTAC AGCTTAATTCCATCCGTAATTCCATGTGTAACTTATTATTACTTCTCCCTGTGTGTCAGTGTGTCTGTGCTTGCAGCTTTGCTCTCTGGTTGCTTGATTAGCTGCCCAATAATCTGAACAATAAGAAATCTGGGGAGTAATTTAAGTAAAAAAAAAAAAAAAAA] [+] EMBL BI798858 [ GCGC TC GGCAAGATGTCCAA GGACGACGCCGACGTCTCCGGCGACC TCTCCGGCCTCTCCGACCAAGGAGCTCGGC GTCCTCGCCGACTGGGAGAC CAAGTTCCAGGCCACAGTACCCCGTCGTCGCCCGCCTCACCGAATG AAAAAAAAAAAATCCCCCCAAATCAACCCTTAGATTATTGTATC CTCTTGTGCTCTAC AGCTTAATTCCATCCGTAATTCCATGTGTAACTTATTATTACTTCTCCCTGTGTGTCAGTGTGTCTGTGCTTGCAGCTTTGCTCTCTGGTTGCTTGATTAGCTGCCC ATAATCTGAACCATAAGAAATCTGGGGAGTAATTTAAGTATAAAAAAAAAA ] [+] EMBL BI798421 [ gcagcaGC TCAGGCAAGATGTCCAA GGACGACGCCGACGTCTCCGGCGACCATCTCCGGCCTCTCCGA CAAGGAGCTCGGCAGTCCTCGCCGACTGGGAGACACAAGTT CAGGCCA AGTACCCCGTCGTCGCCCGCCTCACCGAATG AAAAAAAAAAAATCCCCCC AATCAACCCTTAGATTATTGTATCACTCTTGTGCTCTACAAGCTTAATTCCATCCGTAATTCCATGTGTAACTTATTATTACTTCTCCCTGTGTGTCAGTGTGTCTGTGCTTGCAGCTTTGCTCTCTGGTTGCTTGATTAGCTGCCCAATAATCTGAACAATAAGACCTCTGGGGAGTAATTTAAGTATAAAAAAAAAA ] [+] EMBL AU091348 [ CCCGCCTCACCGAATG AAAAAAAAAAATCCCCCCAAATCAACCCTTAGATTATTGTATC CTCTTGTGCTCTAC AGCTTAATTCCATCCGTAATTCCATGTGTAACTTATTATTACTTCTCCCTGTGTGTCAGTGTGTCTGTGCTTGCAGCTTTGCTCTCTGGTTGCTTGATTAGCTGCCCAATAATCTNNACAATAAGAAATCTGGGGAGTAATTTAA AAAAAAA ] consensusID : consensus_14976#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 394 fasta sequence [AGAGAGAGAAAGAGAGAGGAGAGAGAGATGGCGGCGGCTGACGGCGGCGACTCGGGGCGTACGACGGGAGCGACCCATCGAAGCCGATCTACGTCTCCGTCCGCGGCAAGGTCTACGACGTCACCTCCGGCCGCGGCTTCTACGGCCCCGGCGGCGCTACGCTNCTNTCGCCGGCCGCGACAGCCNGCGCGCTCGGCAAGATGTCCAAGGACGACGCCGACGTCTCCGGCGACCTCTCCGGCCTCTCCGACAAGGAGCTCGGCGTCCTCGCACCTTGGGGAGACCAAGTTCCAGGGCAAGTACCCCGTCGTCGCCCGCCTTAACCGAATTGAAAAAAAAAAATTCCCCCAAATNAACCCTTAGATTATTTGTATTCTCTTGTTGNTTTTACAAG] [+] EMBL OSC2431 [AGAGAGAGAAAGAGAGAGGAGAGAGAGATGGCGGCGGCTGACGGCGGCGACTCGGGGCGTACGACGGGAGCGACCCATCGAAGCCGATCTACGTCTCCGTCCGCGGCAAGGTCTACGACGTCACCTCCGGCCGCGGCTTCTACGGCCCCGGCGGCGCTACGCTNCTNTCGCCGGCCGCGACAGCCNGCGCGCTCGGCAAGATGTCCAAGGACGACGCCGACGTCTCCGGCGACCTCTCCGGCCTCTCCGACAAGGAGCTCGGCGTCCTCGCACCTTGGGGAGACCAAGTTCCAGGGCAAGTACCCCGTCGTCGCCCGCCTTAACCGAATTGAAAAAAAAAAATTCCCCCAAATNAACCCTTAGATTATTTGTATTCTCTTGTTGNTTTTACAAG] consensusID : consensus_14976#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 335 fasta sequence [GAGNAGAGAAAGAGAGAGGAGAGAGAGATNGCNGCNGNTNACNGCNGCGCACTCGGNGCGTACGACNGGAGCGACCCATCGANGCCGATCTACNTCTCCNTCCNCGGCAAGGTCTACGACNTCACCTCCGGCCGCGGCTTCTACNGCCCCNGCNGCGCCTACNCTCTTTCGCCGGCCGCGACAGCCTGCGCGCTTCGGCAAGATGTCCAAGGACGACGNCGACGTCTCCNGCGACCTCTCCAGCCTCTCCGACAAGGAGCTCGGCGTCCTCGNCNTTGGGAGACCAAGTTCCAGGCCAAGTANCCCGTCGTCGGCCGCCTCACCGAAGTGAAAAA] [+] EMBL AU065542 [GAGNAGAGAAAGAGAGAGGAGAGAGAGATNGCNGCNGNTNACNGCNGCGCACTCGGNGCGTACGACNGGAGCGACCCATCGANGCCGATCTACNTCTCCNTCCNCGGCAAGGTCTACGACNTCACCTCCGGCCGCGGCTTCTACNGCCCCNGCNGCGCCTACNCTCTTTCGCCGGCCGCGACAGCCTGCGCGCTTCGGCAAGATGTCCAAGGACGACGNCGACGTCTCCNGCGACCTCTCCAGCCTCTCCGACAAGGAGCTCGGCGTCCTCGNCNTTGGGAGACCAAGTTCCAGGCCAAGTANCCCGTCGTCGGCCGCCTCACCGAAGTGAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14976#2 --------------------------------------------------ACGAGCTCGT 10 consensus_14976#3 --------------------------------------CGAGGAGAGAGAAAGAGAGAGG 22 consensus_14976#1 ------------------------------------------------------------ consensus_14976#4 -----------------------------------------AGAGAGAGAAAGAGAGAGG 19 consensus_14976#5 -----------------------------------------GAGNAGAGAAAGAGAGAGG 19 consensus_14976#0 CACAACCCAACAACCTTCCACTGATCCACACACAGCCGCGAGGAGAGAGAAAGAGAGAGG 60 consensus_14976#2 GCCGA-ATTCGGCACGAGGAGCTGACGGCGGCGCAGCTGCGGGCGTACGACGGGAGCGAC 69 consensus_14976#3 AGAGAGAGATGGCA-GCGGAGCTGACGGCGGCGCAGCTGCGGGCGTACGACGGGAGCGAC 81 consensus_14976#1 AGAGAGAGATGGCG-GCGGAGCTGACGGCGGCGCAGCTGCGGGCGTACGACGGGAGCGAC 59 consensus_14976#4 AGAGAGAGATGGCG-GCGG--CTGACGGCGGCG-ACTCG-GGGCGTACGACGGGAGCGAC 74 consensus_14976#5 AGAGAGAGATNGCN-GCNG--NTNACNGCNGCGCACTCG-GNGCGTACGACNGGAGCGAC 75 consensus_14976#0 AGAGAGAGATGGCG-GCGGAGCTGACGGCGGCGCAGCTGCGGGCGTACGACGGGAGCGAC 119 ** * ** * * * ** ** *** * * * ********* ******** consensus_14976#2 CCATCNAAGCCGATCTACGTCTCCGTCCGCGGCAAGGTCTACGACNTCNCCTCCGGCCGC 129 consensus_14976#3 CCATCGAAGCCGATCTACGTCTCCGTCCGCGGCAAGGTCTACGACGTCACCTCCGGCCGC 141 consensus_14976#1 CCATCGAAGCCGATCTACGTCTCCGTCCGCGGCAAGGTCTACGACGTCACCTCCGGCCGC 119 consensus_14976#4 CCATCGAAGCCGATCTACGTCTCCGTCCGCGGCAAGGTCTACGACGTCACCTCCGGCCGC 134 consensus_14976#5 CCATCGANGCCGATCTACNTCTCCNTCCNCGGCAAGGTCTACGACNTCACCTCCGGCCGC 135 consensus_14976#0 CCATCGAAGCCGATCTACGTCTCCGTCCGCGGCAAGGTCTACGACGTCACCTCCGGCCGC 179 ***** * ********** ***** *** **************** ** *********** consensus_14976#2 GGCTTCTACNGCCCCGGCGGCGCCTACGCCGTCTTCGCCGGCCGCGANGCCAGCCGCGCG 189 consensus_14976#3 GGCTTCTACGGCCCCGGCGGCGCCTACGCCGTCTTCGCCGGCCGCGAGGCCAGCCGCGCG 201 consensus_14976#1 GGCTTCTACGGCCCCGGCGGCGCCTACGCCGTCTTCGCCGGCCGCGAGGCCAGCCGCGCG 179 consensus_14976#4 GGCTTCTACGGCCCCGGCGGCGCTACG-CTNCTNTCGCCGGCCGCGACAGC--CNGCGCG 191 consensus_14976#5 GGCTTCTACNGCCCCNGCNGCGCCTAC-NCTCTTTCGCCGGCCGCGACAGC--CTGCGCG 192 consensus_14976#0 GGCTTCTACGGCCCCGGCGGCGCCTACGCCGTCTTCGCCGGCCGCGAGGCCAGCCGCGCG 239 ********* ***** ** **** ************* * * ***** consensus_14976#2 CT-CGGCAAGATGTCCNAGGACGACNCCGACGTCTCCGGCGACCTCTCCGGCCTCTCCGA 248 consensus_14976#3 CT-CGGCAAGATGTCCAAGGACGACGCCGACGTCTCCGGCGACCTCTCCGGCCTCTCCGA 260 consensus_14976#1 CT-CGGCAAGATGTCCAAGGACGACGCCGACGTCTCCGGCGACCTCTCCGGCCTCTCCGA 238 consensus_14976#4 CT-CGGCAAGATGTCCAAGGACGACGCCGACGTCTCCGGCGACCTCTCCGGCCTCTCCGA 250 consensus_14976#5 CTTCGGCAAGATGTCCAAGGACGACGNCGACGTCTCCNGCGACCTCTCCAGCCTCTCCGA 252 consensus_14976#0 CT-CGGCAAGATGTCCAAGGACGACGCCGACGTCTCCGGCGACCTCTCCGGCCTCTCCGA 298 ** ************* ******** ********** *********** ********** consensus_14976#2 CAAGGAGCTCGGCGTCCTCGC-CGACTGGGAGACCAAGTTCCAGGCCAAGTNCCCCGTCG 307 consensus_14976#3 CAAGGAGCTCGGCGTCCTCGC-CGACTGGGAGACCAAGTTCCAGGCCAAGTACCCCGTCG 319 consensus_14976#1 CAAGGAGCTCGGCGTCCTCGC-CGACTGGGAGACCAAGTTCCAGGCCAAGTACCCCGTCG 297 consensus_14976#4 CAAGGAGCTCGGCGTCCTCGCACCTTGGGGAGACCAAGTTCCAGGGCAAGTACCCCGTCG 310 consensus_14976#5 CAAGGAGCTCGGCGTCCTCGN--CNTTGGGAGACCAAGTTCCAGGCCAAGTANCCCGTCG 310 consensus_14976#0 CAAGGAGCTCGGCGTCCTCGC-CGACTGGGAGACCAAGTTCCAGGCCAAGTACCCCGTCG 357 ******************** ****************** ***** ******* consensus_14976#2 TCNCCCGCCTCA-CCGAATGAAAAAAAAAAAATCCCCCCNAATCAACCCNTAGATTATT- 365 consensus_14976#3 TCGCCCGCCTCA-CCGAATGAAAAAAAAAAAATCCCCCCAAATCAACCCTTAGATTATT- 377 consensus_14976#1 TCGCCCGCCTCA-CCGAATGAAAAAAAAAAA-TCCCCCCAAATCAACCCTTAGATTATT- 354 consensus_14976#4 TCGCCCGCCTTAACCGAATTGAAAAAAAAAAATTCCCCCAAATNAACCCTTAGATTATTT 370 consensus_14976#5 TCGGCCGCCTCA-CCGAAGTGAAAAA---------------------------------- 335 consensus_14976#0 TCGCCCGCCTCA-CCGAA-TGAAAAAAAAAAATCCCCCCAAATCAACCCTTAGATTATT- 414 ** ****** * ***** ***** consensus_14976#2 GTATCCTCTTGTGCTCTACAGCTTAATTCCATCCGTAATTCCATGTGTNACTTATTATTA 425 consensus_14976#3 GTATCCTCTTGTGCTCTACAGCTTAATTCCATCCGTAATTCCATGTGTAACTTATTATTA 437 consensus_14976#1 GTATCCTCTTGTGCTCTACAGCTTAATTCCATCCGTAATTCCATGTGTAACTTATTATTA 414 consensus_14976#4 GTATTCTCTTGTTGNTTTTACAAG------------------------------------ 394 consensus_14976#5 ------------------------------------------------------------ consensus_14976#0 GTATCCTCTTGTGCTCTACAGCTTAATTCCATCCGTAATTCCATGTGTAACTTATTATTA 474 consensus_14976#2 CTTCTCCCTGTGTGTCANTGTGTCTGTGCTTGCANCTTTGCTCTCTGGTTGCTTGATTAN 485 consensus_14976#3 CTTCTCCCTGTGTGTCAGTGTGTCTGTGCTTGCAGCTTTGCTCTCTGGTTGCTTGATTAG 497 consensus_14976#1 CTTCTCCCTGTGTGTCAGTGTGTCTGTGCTTGCAGCTTTGCTCTCTGGTTGCTTGATTAG 474 consensus_14976#4 ------------------------------------------------------------ consensus_14976#5 ------------------------------------------------------------ consensus_14976#0 CTTCTCCCTGTGTGTCAGTGTGTCTGTGCTTGCAGCTTTGCTCTCTGGTTGCTTGATTAG 534 consensus_14976#2 CTGCCCNATAATCTGAACAATAANAAATCTGGGGAGTAATTTAAGTATTGGATTGTCTGG 545 consensus_14976#3 CTGCCCAATAATCTGAACAATAAGAAATCTGGGGAGTAATTTAAGTA------------- 544 consensus_14976#1 CTGCCCAATAATCTGAACAATAAGAAATCTGGGGAGTAATTTAAGTANNNNNNNNNNNNN 534 consensus_14976#4 ------------------------------------------------------------ consensus_14976#5 ------------------------------------------------------------ consensus_14976#0 CTGCCCAATAATCTGAACAATAAGAAATCTGGGGAGTAATTTAAGTATTGGATTGTCTGG 594 consensus_14976#2 TCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA---------- 595 consensus_14976#3 --AAAAAAAAAAAAAAAA------------------------------------------ 560 consensus_14976#1 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 594 consensus_14976#4 ------------------------------------------------------------ consensus_14976#5 ------------------------------------------------------------ consensus_14976#0 TCTTTCTTTTTTGTGATTGCCGCTTGATTTCTTGTGCCATAGGTTGTTCTTAATCTTGAT 654 consensus_14976#2 ----------------------------------------------------- consensus_14976#3 ----------------------------------------------------- consensus_14976#1 NNNNNNNNNN------------------------------------------- 604 consensus_14976#4 ----------------------------------------------------- consensus_14976#5 ----------------------------------------------------- consensus_14976#0 CTGGGTATTCTTGTATAGAAGAAGCAATGTGCTGAATGCCTTGACCACAGAAA 707 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||