These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14993#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1309 fasta sequence [GAAGATTGCAGTTGCTTATCATATTCTGCTCTAGATTTGGGATAACGTAGGATTTCCCATGCCTTTTGCACACTGAGAAATTCATTTCGCTCACTGGAAGACACCAATGGATTGAGAGCCATCTGTGCTTTGTCAGGATGTGTATTTAGTACAGCAGACTTATATGCTGCACGAATTTCATCATATGTAGCATCTTTCCTCACGGATAGAACTTCGTACAAGGTCTCCTGGTTGGAAAAGTTGCCTCCTTCAAGCATGTCTGAATAACTGTCTCTAGAAAGCAAAATAACGGCGAAGGTCTTGACGGCCGATGCAGCCTTGTGGATCGCAGGGTCGACTGCTTGCGCGGCGAAGTTGCGACGCGCGAGGCGGCGAGGGGAGGTGCGGCCGATGCGGGGTACGTGAATGGTTTCCGAACCTGGGCCGCCGTCAACCGCTGGTCGAGGCGGCGGCCGGTGCGGCGGCGAGAGCGAGAGAGAGATGAGCCCGGCGGCGGAGATGGGAGCACCTTGGCCGGT-GGAGTTCATGGGCGCGGCGGAGGGCGGGTTCGGCGGGGAGGCGG-TCTACTGCGCCGTCATCCTGTGGCTGTCCGTCGTGGCGTGGATCATCTTCACCTCCGTCGGCGACGGCGACGAGGGCGGCGGCCGCGGCTC-GCGCCGCCGCCGCCGCCGCCGCAGCAGCCCGGTGTTCGTCGGCGCCGCCGGCATCTGCGACGGCACCGGCCCCGGGTG-CAGCGGCGGGTTCGGCCCCTGCGGCACCTGCGTCGA-CTA-GCGTCGCGA-TGTCGCGA-GGCGA-GTACTA-GTA-GCCTTTTA-GCTCTAGCTGA-TGCTGCTGCGA-GCCATGGGGA-TTTTGATTAGGTGTGTGTGAGATCATCAGCTCCCCTTTGTGAAGGCAATAAGAGGGAGCTCGCGTCCAATCCTTTGCTTTAG-CCGCTGCAGTAATCAAGCTCTAAGCTTTCTCCTTTTTTTTCTCCCAAATCGATCGATCCTATGTAAATTTCTTGAAATCTTGATCTTTGATGCTCTTGCTTTGAACTCGCGATCATATGTAAATTGATCGATCAAGCTGATGTGCTCTTGGTGTTCTTGAGTATTAGCATGGAAGCTCATCAGTTCCTCTTCGATCAATCCTATGTAAATTCCTTGAAACCTTAATCTTAATGTTCTCTTCCTCACTTGATGCTCGTGCTTTCAACTTGCAATTCTATGTAAATTGATCGATCAAGTAGATGTTCTTGGTGTTCTTGAGTATTATTATAGCATGAAAGTTCATCAGCTCTCCTGCGCTTGTGAACCCATTTGTGTTTAAAAAAAAA] [-] EMBL CF326136 [GAAGATTGCAGTTGCTTATCATATTCTGCTCTAGATTTGGGATAACGTAGGATTTCCCATGCCTTTTGCACACTGAGAAATTCATTTCGCTCACTGGAAGACACCAATGGATTGAGAGCCATCTGTGCTTTGTCAGGATGTGTATTTAGTACAGCAGACTTATATGCTGCACGAATTTCATCATATGTAGCATCTTTCCTCACGGATAGAACTTCGTACAAGGTCTCCTGGTTGGAAAAGTTGCCTCCTTCAAGCATGTCTGAATAACTGTCTCTAGAAAGCAAAATAACGGCGAAGGTCTTGACGGCCGATGCAGCCTTGTGGATCGCAGGGTCGACTGCTTGCGCGGCGAAGTTGCGACGCGCGAGGCGGCGAGGGGAGGTGCGGCCGATGCGGGGTACGTGAATGGTTTCCGAACCTGGGCCGCCGTCAACCGCTGGTCGAGGCGGCGGCCGGTGCGGCGGCGAGAGCGAGAGAGAGATGAGCCCGGCGGCGGAGATGGGAGCACCTTGGCCGGT GGAGTTCATGGGCGCGGCGGAGGGCGGGTTCGGCGGGGAGGCGG TCTACTGCGCCGTCATCCTGTGGCTGTCCGTCGTGGCGTGGATCATCTTCACCTCCGTCGGCGACGGCGACGAGGGCG ] [+] EMBL AK107853 [ aGCGAGAGCGAGAGAGAGATGAGCCCGGCGGCGGAGATGGGAGCACCTTGGCCGGT GGAGTTCATGGGCGCGGCGGAGGGCGGGTTCGGCGGGGAGGCGG TCTACTGCGCCGTCATCCTGTGGCTGTCCGTCGTGGCGTGGATCATCTTCACCTCCGTCGGCGACGGCGACGAGGGCGGCGGCCGCGGCTC GCGCCGCCGCCGCCGCCGCCGCAGCAGCCCGGTGTTCGTCGGCGCCGCCGGCATCTGCGACGGCACCGGCCCCGGGTG CAGCGGCGGGTTCGGCCCCTGCGGCACCTGCGTCGA CTA GCGTCGCGA TGTCGCGA GGCGA GTACTA GTA GCCTTTTA GCTCTAGCTGA TGCTGCTGCGA GCCATGGGGA TTTTGATTAGGTGTGTGTGAGATCATCAGCTCCCCTTTGTGAAGGCAATAAGAGGGAGCTCGCGTCCAATCCTTTGCTTTAG CCGCTGCAGTAATCAAGCTCTAAGCTTTCTCCTTTTTTTTCTCCCAAATCGATCGATCCTATGTAAATTTCTTGAAATCTTGATCTTTGATGCTCTTGCTTTGAACTCGCGATCATATGTAAATTGATCGATCAAGCTGATGTGCTCTTGGTGTTCTTGAGTATTAGCATGGAAGCTCATCAGTTCCTCTTCGATCAATCCTATGTAAATTCCTTGAAACCTTAATCTTAATGTTCTCTTCCTCACTTGATGCTCGTGCTTTCAACTTGCAATTCTATGTAAATTGATCGATCAAGTAG ] [+] EMBL BI795014 [ AGAGAGAGATGAGCCC GCGGCGGAGATGGGAGCACCTTGGCCGGT GGAGTTCATGGGCGCGGCGGAGGGCGGGTTCGGCGGGGAGGCGG TCTACTGCGCCGTCATCCTGTGGCTGTCCGTCGTGGCGTGGATCATCTTCACCTCCGTCGGCGACGGCGAC ] [+] EMBL BI798118 [ AGAGAGAGATGAGCCCGGCGGCGGAGATGGGAGCACCTTGGCCGGT GGAGTTCATGGGCGCGGCGGAGGGCGGGTTCGGCGGGGA GCGG TCTACTGCGCCGTCATCCTGTGGCTGTCCGTCCCGGCGTGGATCATCTTCACCTCCGTCGGCGACGGCGA ] [+] EMBL BI799455 [ AGAGAGAGATGAGCCC GCGGCGGAGATGGGAGCACCTTGGCCGGT GGAGTTCATGGGCGCGGCGGAGGGCGGGTTCGGCGGGGAGGCGG TCTACTGC CCGTCATCCTGTGGCTGTCCGTCGTGGCGTGGATCATCTTCACCTCCGTCGGCGACGGCGA ] [-] EMBL CB966686 [ CGGCGGCGGAGATGGGAGCACCTTGGCCGGT GGAGTTCATGGGCGCGGCGGAGGGCGGGTTCGCCGGGGAGNCGG TCTACTGCGCCGTCATCCTGTGGCTGTCCGTCGTGGCGTGGATCATCTTCACCTCCGTCGGCGACGGCGACGAGGGCGGCGGCCGCGGCTCGGCGCCGCCGCCGCCGCCGCCGCAGCAGCCCGGTGTTCGTCGGCGCCGCCGGCATCTGCCACGGCACCGGCCCCGGGTG CAGCGGCGGGTTCGGCCCCTGCGGCACCTGCGTCGA CTA GCGTCGCGA TGTCGCGA GGCGA GTACTA GTA GCCTTTTA GCTCTAGCTGA TGCTGCTGCGA GCCATGGGGA TTTTGATTAGGTGTGTGTGAGATCATCAGCTCCCCTTTGTGAAGGCCATAAGAGGGAGCTCGCGTCCCATCCTTTGCTTTAG CCGCTGCAGTAATCAAGCTCTAAGCTTTCTCCTTTTTTTTCTCCCCAATCGATCGATCCTATGTAAATTTCTTGAAATCTTGATCTTTGATGCT ] [-] EMBL CB967466 [ CACC TGGCCGGTGGGAGTTCATGGGCGCGCCGGAGGCCGGTTTCGCCGGGG GGCGGTTCTACTGCCCCGTCATCCTGTGGCTGTCCGTCGTGGCGTGGATCATCTTCACCTCCGTCGGCGACGGCGACGAGGGCGGCGNCCGCGGCTC GCGCCGCCGCCGCCGCCGCCGCAGCAGCCCGGTGTTCGTCGGCGCCGCCGGCATCTGCCACGGCACCGGCCCCGGGTG CAACGGCGGGTTCGGCCCCTGCGGCACCTGCGTCGA CTA GCGTCGCGA TGTCGCGA GGCGA GTACTA GTA GCCTTTTA GCTCTAGCTGA TGCTGCTGCGA GCCATGGGGA TTTTGATTAGGTGTGTGTGAGATCATCAGCTCCCCTTTGTGAAGGCAATAAGAGGGAGCTCGCGTCCAATCCTTTGCTTTAG CCGCTGCAGTAATCAAGCTCTAAGCTTTCTCCTTTTTTTTCTCCCCAATCGATCGATCCTATGTAAATTTCTTGAAATCTTGATCTTTGATGCT ] [+] EMBL CB965347 [ GCCGCCGCCGCCGCCGCCGCAGCAGCCCGGTGTTCGTCGGCGCCGCCGGCATCTGCGACGGCACCGGCCCCGGGTGCCCGCGGCGGGTTCGGCCCCTGCGGCCGCTGCGTCGACCTACGCGTCGCGACTGTCGCGACGGCGACGTACTACGTACGCCTTTTACGCTCTAGCTGACTGCTGCTGCGACGCCATGGGGACTTTTGCTTAGGTGTGTGTGAGATCATCAGCTCCCCTTTGTGAAGGCAATAAGAGGGAGCTCGCGTCCAATCCTTTGC TTAGACCGCTGCAGTAATCAAGCTCTAAGCTTTCTCCTTTTTTTTCTCCCAAATCGCTCG ] [+] EMBL BI802901 [ AGATCATCAGCTCCCCTTTGTGAAGGCAATAAGAGGGAGCTCGCGTCCAATCCTTTGCTTTAG CCGCTGCAGTAATCAAGCTCTAAGCTTTCTCCTTTTTTTTCTCCC AATCGATCGATCCTATGTAAATTTCTTGAAATCTTGATCTTTGATGCTCTTGCTTTGAACTCGCGATCATATGTAAATTGATCGATCAAGCTGATGTGCTCTTGGTGTTCTTGAGTATTAGCATGGAAGCTCATCAGTTCCTCTTCGATCAATCCTATGTAAATTCCTTGAAACCTTAATCTTAATGTTCTCTTCCTCACTTGATGCTCGTGCTTTCAACTTGCAATTCTATGTAAATTGATCGATCAAGTAGATGTTCTTGGTGTTCTTGAGTATTATTATAGCATGAAAGTTCATCAGCTCTCCTGCGCTTGTGAACCCATTTGTGTTTAAAAAAAAA] [+] EMBL BI803191 [ AGATCATCAGCTCCCCTTT TGAAGGCAATAAGAGGGAGCTCGCGTCCAATCCTTTGCTTTA CCGCT CAGTAATCAAGCTCTAAGCTTTCTCCTTTTTTTTCTCCC AATCGATCGATCCTATGTAAATTTCTTGAAATCTTGATCTTTGATGCTCTTGCTTTGAACTCGCGATCATATGTAAATTGATCGATCAAGCTGATGTGCTCTTGGTGTTCTTGAGTATTAGCATGGAAGCTCATCAGTTCCTCTTCGATCAATCCTATGTAAATTCCTTGAAACCTTAATCTTAATGTTCTCTTCCTCACTTGATGCTCGTGCTTTCAACTTGCAATTCTATGTAAATTGATCGATCAAGTAGATGTTCTTGGTGTTCTTGAGTATTATTATAGCATGAAAGTTCATCAGCTCTCCTGAGCTTGTGAACCAATTTGTGTTTAAAAAAAAA] consensusID : consensus_14993#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1078 fasta sequence [ATGTATTAATCACCAGATAAGCACCTTTAATTCGCTGCGGCCTGAATTGACAAAAGGTGGTTAGCTGATTACAACGGTCAAAATGTCATTTATAACCCTACAACCAACAGAGCTTACATGTAGTACTACAAAATTTCATTGGTCACACTGCATTGAGGATGATCAGAGGTACATTCTTCCAGAATTTCATTTTTAAACAGCAATGTACGTTCCATGTGCACGCCGAATTCTTCGAAGAATAGGAGGTAGCATCTTTATATTGATCTTTGCTGGCAAGCATACTGATAGATGCAAACAAAAAAAAATTACCATCAAGTTTTATTTGTAACCAATCGTGCCTTAAGAGAACATGAGCCACAGCCAAGAACAACAGATGATGGAACAGAATCAGAAGTGTGCAATTCCATCTCTCCGTCCTCCCTGACTGAAATTCCAATCTGACCAAGTTCACGTGAAGTGATTGAGAAATAATCACCACACCTACAAGGATACAAAAGCTCCACAGAATCAGCAGTACTTTCAACGATCATGTCATCAATTTCAATTTCAGTTGCAACAATTTCAAGGTTCTGTCGGGAAGATTGCAGTTGCTTATCATATTCTGCTCTAGATTTGGGATAACGTAGGATTTCCCATGCCTTTTGCACACTGAGAAATTCATTTCGCTCACTGGAAGACACCAATGGATTGAGAGCCATCTGTGCTTTGTCAGGATGTGTATTTAGTACAGCAGACTTATATGCTGCACGAATTTCATCATATGTAGCATCTTTCCTCACGGATAGAACTTCGTACAAGGTCTCCTGGTTGGAAAAGTTGCCTCCTTCAAGCATGTCTGAATAACTGTCTCTAGAAAGCAAAATAACGGCGAAGGTCTTGACGGCCGATGCAGCCTTGTGGATCGCAGGGTCGACTGCTTGCGCGGCGAAGTTGCGACGCGCGAGGCGGCGAGGGGAGGTGCGGCCGATGCGGGGTACGTGAATGGTTTCCGAACCTGGGCCGCCGTCAACCGCTGGTCGAGGCGGCGGCCGGTGCGGCGGCGCAGCCGACGGGCAGAGAGGAGGAGGGGAGGGGCGGC] [-] EMBL AK101876 [ATGTATTAATCACCAGATAAGCACCTTTAATTCGCTGCGGCCTGAATTGACAAAAGGTGGTTAGCTGATTACAACGGTCAAAATGTCATTTATAACCCTACAACCAACAGAGCTTACATGTAGTACTACAAAATTTCATTGGTCACACTGCATTGAGGATGATCAGAGGTACATTCTTCCAGAATTTCATTTTTAAACAGCAATGTACGTTCCATGTGCACGCCGAATTCTTCGAAGAATAGGAGGTAGCATCTTTATATTGATCTTTGCTGGCAAGCATACTGATAGATGCAAACAAAAAAAAATTACCATCAAGTTTTATTTGTAACCAATCGTGCCTTAAGAGAACATGAGCCACAGCCAAGAACAACAGATGATGGAACAGAATCAGAAGTGTGCAATTCCATCTCTCCGTCCTCCCTGACTGAAATTCCAATCTGACCAAGTTCACGTGAAGTGATTGAGAAATAATCACCACACCTACAAGGATACAAAAGCTCCACAGAATCAGCAGTACTTTCAACGATCATGTCATCAATTTCAATTTCAGTTGCAACAATTTCAAGGTTCTGTCGGGAAGATTGCAGTTGCTTATCATATTCTGCTCTAGATTTGGGATAACGTAGGATTTCCCATGCCTTTTGCACACTGAGAAATTCATTTCGCTCACTGGAAGACACCAATGGATTGAGAGCCATCTGTGCTTTGTCAGGATGTGTATTTAGTACAGCAGACTTATATGCTGCACGAATTTCATCATATGTAGCATCTTTCCTCACGGATAGAACTTCGTACAAGGTCTCCTGGTTGGAAAAGTTGCCTCCTTCAAGCATGTCTGAATAACTGTCTCTAGAAAGCAAAATAACGGCGAAGGTCTTGACGGCCGATGCAGCCTTGTGGATCGCAGGGTCGACTGCTTGCGCGGCGAAGTTGCGACGCGCGAGGCGGCGAGGGGAGGTGCGGCCGATGCGGGGTACGTGAATGGTTTCCGAACCTGGGCCGCCGTCAACCGCTGGTCGAGGCGGCGGCCGGTGCGGCGGCGCAGCCGACGGGCAGAGAGGAGGAGGGGAGGGGCGGC] [+] EMBL CF309994 [ tttttTAAGCACCTTTAATTCGCTGCGGCCTGAATTGACAAAAGGTGGTTAGCTGATTACAACGGTCAAAATGTCATTTATAACCCTACAACCAACAGAGCTTACATGTAGTACTACAAAATTTCATTGGTCACACTGCATTGAGGATGATCAGAGGTACATTCTTCCAGAATTTCATTTTTAAACAGCAATGTACGTTCCATGTGCACGCCGAATTCTTCGAAGAATAGGAGGTAGCATCTTTATATTGATCTTTGCTGGCAAGCATACTGATAGATGCAAACAAAAAAAAATTACCATCAAGTTTTATTTGTAACCAATCGTGCCTTAAGAGAACATGAGCCACAGCCAAGAACAACAGATGATGGAACAGAATCAGAAGTGTGCAATTCCATCTCTCCGTCCTCCCTGACTGAAATTCCAATCTGACCAAGTTCACGTGAAGTGATTGAGAAATAATCACCACGCCTACAAGGATACAAAAGCTCCACAGAATCAGCAGTACTTTCAACGATCATGTCATCAATTTCAATTTCAG ] [+] EMBL CB666221 [ TGGTTAGCTGATTACAACGCTCAAAATGTCATTTATAACCCTACAACCAACAGAGCTTACATGTAGTACTACAAAATTTCATTGGTCACACTGCATTGAGGATGATCAGAGGTACATTCTTCCAGAATTTCATTTTTAAACAGCAATGTACGTTCCATGTGCACGCCGAATTCTTCGAAGAATAGGAGGTAGCATCTTTATATTGATCTTTGCTGGCAAGCATACTGATAGATGCAAACAAAAAAAAATTACCATCAAGTTTTATTTGTAACCAATCGTGCCTTAAGAGAACATGAGCCACAGCCAAGAACAACAGATGATGGAACAGAATCAGAAGTGTGCAATTCCATCTCTCCGTCCTCCCTGACTGAAATTCCAATCTGACCAAGTTCACGTGAAGTGATTGAGAAATAATCACCACACCTACAAGGATACAAAAGCTCCACAGAATCAGCAGTACTTTCAACGATCATGTCATCAATTTCAATTTCAGTTGCAACAATTTCAAGGTTCTGTCGGGAAGATTGCAGTTGCTTATCATATTCTGCTCTAGATTTGGGATAACGTAGGATTTCCCATGCCTTTTGCACACTGAGAAATTCATTTCGCTCACTGGAAGACACCAATGGATTGAGAGCCATCTGTGCTTTGTCAGGATGTGTATTTAGTACAGCAGACTTATATGCTGCACGAATTTCATCATATGTAGCATCTTTCCTCACGGATAGAACTTCGTACAAGGTCTCCTGGTTGGAAAAGTTGCCTCCTTCA ] [-] EMBL CF309995 [ TGTAGTACTACAAAATTTCATTGGTCACACTGCATTGAGGATGATCAGAGGTACATTCTTCCAGAATTTCATTTTTAAACAGCAATGTACGTTCCATGTGCACGCCGAATTCTTCGAAGAATAGGAGGTAGCATCTTTATATTGATCTTTGCTGGCAAGCATACTGATAGATGCAAACAAAAAAAAATTACCATCAAGTTTTATTTGTAACCAATCGTGCCTTAAGAGAACATGAGCCACAGCCAAGAACAACAGATGATGGAACAGAATCAGAAGTGTGCAATTCCATCTCTCCGTCCTCCCTGACTGAAATTCCAATCTGACCAAGTTCACGTGAAGTGATTGAGAAATAATCACCACGCCTACAAGGATACAAAAGCTCCACAGAATCAGCAGTACTTTCAACGATCATGTCATCAATTTCAATTTCAGTTGCAACAATTTCAAGGTTCTGTCGGGAAGATTGCAGTTGCTTATCATATTGTGCTCTAGATTTGGGATAA ] consensusID : consensus_14993#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 895 fasta sequence [ATTTTCAGTTGCAACAATTTCAAGGTTCTGTCGGGAAGATTGCAGTTGCTTATCATATTCTGCTCTAGATTGGGGATAACGTAGGATTTCCCATGCCTTTTGCACACTGAGAAATTCATTTCGCTCACTGGAAGACACCAATGGATTGAGAGCCATCTGTGCTTTGTCAGGATGTGTATTTAGTACAGCAGACTTATATGCTGCACGAATTTCATCATATGTAGCATCTTTCCTCACGGATAGAACTTCGTACAAGGTCTCCTGGTTGGAAAAGTTGCCTCCTTCAAGCATGTCTGAATAACTGTCTCTAGACTGGGCAAGGGAAAAAAAAAGTGGTTCAGCAAACATGGAACAAAAAAAAGTATGTAATTTATGTCTCATAACCTTCTGCGGCAGAAGTATTATGACTTAAGCAGAATCGTAATAACATAACATTTGTGCAAATCTGAAAGAAGGTGCATAGGAGCACCTCTCTGAAATATAACTTCTAAAAAACCAAGGCAGTTTAAAGAACTGGTATATTGCTTAAGATTTTGCAATGTCATGACACAATCTTTCCATTGAGGGGGACAGATTCAGATTGGGACTCTTGAGTTTATAGTCACAGATCTGTTACAATTTTACATTTGGCATTGCATATTGTTTTCACAGATTATCTAATTGATTATATGGATAAACTAAACATTTTAAGAAATAAACTTAAAAATAGCTTAGAAAATGTGGTTTAAACAATGCAGTAGAAGAAAGTTTTCGAGAAAACATATTTTTAGAGGCATGATCAAATAAAGTAGCCAAAAAGAACAGGGCCGCAGAGGGCACTTATTGCAAGATTATAGATTCATAGCATGACTTTAAATATGGTGATATAATGATCTACTCTTTCCAAAGGGGGGGC] [-] EMBL CB666220 [ATTTTCAGTTGCAACAATTTCAAGGTTCTGTCGGGAAGATTGCAGTTGCTTATCATATTCTGCTCTAGATTGGGGATAACGTAGGATTTCCCATGCCTTTTGCACACTGAGAAATTCATTTCGCTCACTGGAAGACACCAATGGATTGAGAGCCATCTGTGCTTTGTCAGGATGTGTATTTAGTACAGCAGACTTATATGCTGCACGAATTTCATCATATGTAGCATCTTTCCTCACGGATAGAACTTCGTACAAGGTCTCCTGGTTGGAAAAGTTGCCTCCTTCAAGCATGTCTGAATAACTGTCTCTAGACTGGGCAAGGGAAAAAAAAAGTGGTTCAGCAAACATGGAACAAAAAAAAGTATGTAATTTATGTCTCATAACCTTCTGCGGCAGAAGTATTATGACTTAAGCAGAATCGTAATAACATAACATTTGTGCAAATCTGAAAGAAGGTGCATAGGAGCACCTCTCTGAAATATAACTTCTAAAAAACCAAGGCAGTTTAAAGAACTGGTATATTGCTTAAGATTTTGCAATGTCATGACACAATCTTTCCATTGAGGGGGACAGATTCAGATTGGGACTCTTGAGTTTATAGTCACAGATCTGTTACAATTTTACATTTGGCATTGCATATTGTTTTCACAGATTATCTAATTGATTATATGGATAAACTAAACATTTTAAGAAATAAACTTAAAAATAGCTTAGAAAATGTGGTTTAAACAATGCAGTAGAAGAAAGTTTTCGAGAAAACATATTTTTAGAGGCATGATCAAATAAAGTAGCCAAAAAGAACAGGGCCGCAGAGGGCACTTATTGCAAGATTATAGATTCATAGCATGACTTTAAATATGGTGATATAATGATCTACTCTTTCCAAAGGGGGGGC] consensusID : consensus_14993#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 723 fasta sequence [NAGAGAGATGAGCCCGGCGGCGGAGATGGGAGCACCTTGGCCGGTGGAGTTCATGGGCGCGGCGG--AGGGCGGGTTCGGCGGGGAGGCGGTCTA-TGCG-CCGTCATCCTGTGGCTGTCCGTCGTGGCGTGGATCATCTTCACCTCCGTC-GCGACGCCGCC-NCCGCAGCAGCCCGGTGTTCGTCGGCGCCGCCGGCATCTGCGACGGCACCGGCCCCGGGTGCAGCGGCGGGTTCGG-CCCTGCGGCACCTGCGTNGACTAGCGTCGCGATGTCGCGAGGCGAGTACTAGTAGCCTTTTAGCTCTAGCTGATGCTGCTGCGAGCCATGGGGATTTTGATTAGGTGTGTGTGAGATCATCAGCTCCCCTTTGTGAAGGCAATAAGAGGGAGCTCGCGTCCAATCCTTTGCTTTAGCCGCTGCAGTAATCAAGCTCTAAGCTTTCTCCTTTTTTTTCTCCCAAATCGATCGATCCTATGTAAATTTCTTGAAATCTTGATCTTTGATGCTCTTGCTTTGAACTCGCGATCATATGTAAATTGATCGATCAAGCTGATGTGCTCTTGGTGTTCTTGAGTA-TTAGCAT-GGAAGCTCATCAGTTCCTCTTCGATCAATCCTATGTAAATTCCTTGAAACCTTAATCTTAATGTTCTCTTCCTCAAANNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACACTGTCTTCCCG] [+] EMBL OS0745A [NAGAGAGATGAGCCCGGCGGCGGAGATGGGAGCACCTTGGCCGGTGGAGTTCATGGGCGCGGCGG AGGGCGGGTTCGGCGGGGAGGCGGTCTACTGCG CCGTCATCCTGTGGCTGTCCGTCGTGGCGTGGATCATCTTCACCTCCGTCGGCGACGCCGCC NCCGCAGCAGCCCGGTGTTCGTCGGCGCCGCCGGCATCTGCGACGGCACCGGCCCCGGGTGCAGCGGCGGGTTCGGCCCCTGCGGCACCTGCGTNGACTAGCGTCGCGATGTCGCGAGGCGAGTACTAGTAGCCTTTTAGCTCTAGCTGATGC ] [+] EMBL C98126 [ nGCCCGGCCGNAAGGGCGGGTTCGCCGGGGAGGCGGTCTA TGCGCCCGTCATCCTGTGGCTGTCCGTCGTGGCGTGGATCATCTTCACNTCCGTC GCGACGCCGCCGCCCGCAGCAGCCCGGTGTTCGTCGGCGCCGCCGGCATCTGCGACGGCACCGGCCCCGGGTGCAGCGGCGGGTTCGG CCCTGCGGCACCTGCGTCNACTAGCGTCGCGATGTCGCGAGGCGAGTACTAGTAGCCTTTTAGCTCTAGCTGATGCTGCTGCGAGCCATGGGGATTTTGATTAGGTGTGTGTGAGATCATCAGCTCCCCTTTGTGAAGGCAATAAGAGGGAGCTCGCGTCCAATCCTTTGCTTTAGCCGCTGCAGTAATCAAGCTCTAAGCTTTCTCCTTTTTTTTCTCCCAAATCGATCGATCCTATGTAAATTTCTTGAAATCTTGATCTTTGATGCTCTTGCTTTGAACTCGCGATCATATGTAAATTGATCGATCAAGCTGATGTGCTCTTGGTGTTCTTGAGTA TTAGCAT GGAAGCTCATCAGTTCCTCTTCGATCAATCCTATGTAAATTCCTTGAAACCTTAATCTTAATGTTCTNTNCTTCAAANNAAA ] [-] EMBL AU066200 [ CCTTTTAGCCCTANCTGATGCTGCTNCGAGCCATGGGGA TTTGATTAGGTGTGTGTGAGATCATCAGCTCCCCTTTGTGAAGGCAATAAGAGGGAGCTCGCGTCCAATCCTTTGCTTTAGCCGCTGCAGTAATCAAGCTCTAAGCTTTCTCCTTTTTTTTCTCCCAAATCGATCGATCCTATGTAAATTTCTTGAAATCTTGATCTTTGATGCTCTTGCTTTGAACTCGCGATCATATNTAAATTGATCGATCAAGCTGATGTGCTCTTGGTGGTCTTGAGTATTTAGCATGGGAAGCTCATCAGTTCCTCTTCGANCAATCCTATGTAAANTCCTTGAAACCTTAATCTTAATGTTCTCTTCCTCA ] [+] EMBL CF308508 [ GAAGCTCATCAGTTCCTCTTCGATCAATCCTATGTAAATTCCTTGAAACCTTAATCTTAATGTTCTCTTCCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACACTGTCTTCCCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14993#0 GAAGATTGCAGTTGCTTATCATATTCTGCTCTAGATTTGGGATAACGTAGGATTTCCCAT 60 consensus_14993#3 ------------------------------------------------------------ consensus_14993#1 ------------------------------------------------------------ consensus_14993#2 ------------------------------------------------------------ consensus_14993#0 GCCTTTTGCACACTGAGAAATTCATTTCGCTCACTGGAAGACACCAATGGATTGAGAGCC 120 consensus_14993#3 ------------------------------------------------------------ consensus_14993#1 ------------------------------------------------------------ consensus_14993#2 ------------------------------------------------------------ consensus_14993#0 ATCTGTGCTTTGTCAGGATGTGTATTTAGTACAGCAGACTTATATGCTGCACGAATTTCA 180 consensus_14993#3 ------------------------------------------------------------ consensus_14993#1 ------------------------------------------------------------ consensus_14993#2 ------------------------------------------------------------ consensus_14993#0 TCATATGTAGCATCTTTCCTCACGGATAGAACTTCGTACAAGGTCTCCTGGTTGGAAAAG 240 consensus_14993#3 ------------------------------------------------------------ consensus_14993#1 ------------------------------------------------------------ consensus_14993#2 ------------------------------------------------------------ consensus_14993#0 TTGCCTCCTTCAAGCATGTCTGAATAACTGTCTCTAGAAAGCAAAATAACGGCGAAGGTC 300 consensus_14993#3 ------------------------------------------------------------ consensus_14993#1 ------------------------------------------------------------ consensus_14993#2 ------------------------------------------------------------ consensus_14993#0 TTGACGGCCGATGCAGCCTTGTGGATCGCAGGGTCGACTGCTTGCGCGGCGAAGTTGCGA 360 consensus_14993#3 ------------------------------------------------------------ consensus_14993#1 ------------------------------------------------------------ consensus_14993#2 ------------------------------------------------------------ consensus_14993#0 CGCGCGAGGCGGCGAGGGGAGGTGCGGCCGATGCGGGGTACGTGAATGGTTTCCGAACCT 420 consensus_14993#3 ------------------------------------------------------------ consensus_14993#1 ------------ATGTATTAATCACCAGATA-AGCACCTTTAATTCGCTGCGGCCTGAAT 47 consensus_14993#2 --------------------ATTTTCAGTTGCAACAATTTCAAGGTTCTGTCGGGAAGAT 40 consensus_14993#0 GGGCCGCCGTCAACCGCTGGTCGAGGCGGCGGCCGGTGCGGCGGCGAGAGCGAGAGAGAG 480 consensus_14993#3 -----------------------------------------------------NAGAGAG 7 consensus_14993#1 TGACAAAAGGTGGTTAGCTGATTACAACGGTCAAAATGTCATTTATAACCCTACAACCAA 107 consensus_14993#2 TGC----AGTTGCTTATCATATTCT---GCTCTAGA--TTGGGGATAACGTAGGATTTCC 91 * consensus_14993#0 ATGAGCCCGGCGGCGGAGATGGGAGCACCTTGGCCGGTGGAGTTCATGGGCGCGGCGGAG 540 consensus_14993#3 ATGAGCCCGGCGGCGGAGATGGGAGCACCTTGGCCGGTGGAGTTCATGGGCGCGGCGGAG 67 consensus_14993#1 CAGAGCTTACATGTAGTACTACAAA-ATTTCATTGGTCACACTGCATTGA-GGATGATCA 165 consensus_14993#2 CATGCCTTTTGCACACTGAGAAATTCATTTCGCTCACTGGAAGACACCAATGGATTGAGA 151 * * * * ** * consensus_14993#0 GGCG-----GGTTCGGCGGGGAGGCGGTCTACTGCGCCG---------TCATCCTGTGGC 586 consensus_14993#3 GGCG-----GGTTCGGCGGGGAGGCGGTCTA-TGCGCCG---------TCATCCTGTGGC 112 consensus_14993#1 GAGGTACATTCTTC--CAGAATTTCATTTTTAAACAGCAATGTACGTTCCATGTGCACGC 223 consensus_14993#2 GCCATCTGTGCTTTGTCAGGATGTGTATTTAGTACAGCA------GACTTATATGCTGCA 205 * ** * * * * * * ** consensus_14993#0 TGTCCGTCGTGGCGTGGATCATCTTCACCTCCGTCGGCGACGGCGACGAGGGCGGCGGCC 646 consensus_14993#3 TGTCCGTCGTGGCGTGGATCATCTTCACCTCCGTCG------------------------ 148 consensus_14993#1 CGAATTCTTCGAAGAATAGGAGGTAGCATCTTTATATTGATCTTTGCTGGCAAGCATACT 283 consensus_14993#2 CGAATTTCATCATATGTAGCATCTTTCCTCAC-GGATAGAACTTCG-TACAAGGTCTCCT 263 * * * * consensus_14993#0 GCGGCTCGCGCCGCCGCCGCCGCCGCCG-CAGCAGCCCGGTGTTCGTCGGCGCCGCCGGC 705 consensus_14993#3 --------------CGACGCCGCCNCCG-CAGCAGCCCGGTGTTCGTCGGCGCCGCCGGC 193 consensus_14993#1 GATAGATGCAAACAAAAAAAAATTACCATCAAGTTTTATTTGTAACCAATCGTGCCTTAA 343 consensus_14993#2 GGTTGG--------AAAAGTTGCCTCCTTCAAG---CATGTCTGAATAACTGTCTCTAGA 312 ** ** * * * * consensus_14993#0 ATCTGCGACGGCACCGGCCCCGGGTGCAGCGGCGGGTTCGGCCCCTGCGGCACCTGCGTC 765 consensus_14993#3 ATCTGCGACGGCACCGGCCCCGGGTGCAGCGGCGGGTTCGGCCC-TGCGGCACCTGCGTN 252 consensus_14993#1 GAGAACATGAGCCACAGCCAAGAA--CAACAGATGATGGAACAG-AATCAGAAGTGTGCA 400 consensus_14993#2 CTGGGCAAGGGAAAAAAAAAGTGGTTCAGCAAAC-ATGGAACAA-AA--AAAAGTATGTA 368 * * ** * * * * * * consensus_14993#0 GACT-AGCGTCGCGATGTCGCGAGGC--GAGT---ACTAGTAGCCTTTTAGCTCTAGCTG 819 consensus_14993#3 GACT-AGCGTCGCGATGTCGCGAGGC--GAGT---ACTAGTAGCCTTTTAGCTCTAGCTG 306 consensus_14993#1 ATTC-CATCTCTCCGTCCTCCCTGACTGAAATTCCAATCTGACCAAGTTCACGTGAAGTG 459 consensus_14993#2 ATTTATGTCTCATAACCTTCTGCGGCAGAAGT---ATTATGAC-----TTAAGCAGAATC 420 ** * * * * * * * * * consensus_14993#0 ATGCTGCTGCGA--GCCATGGGGATTTTGAT--TAGGTGTGTGTGAGATCATCAGCTCCC 875 consensus_14993#3 ATGCTGCTGCGA--GCCATGGGGATTTTGAT--TAGGTGTGTGTGAGATCATCAGCTCCC 362 consensus_14993#1 ATTGAGAAATAATCACCACACCTACAAGGATACAAAAGCTCCACAGAATCAGCAGTACTT 519 consensus_14993#2 GTAATAACATAACATTTGTGCAAATCTGAA---AGAAGGTGCATAGG---AGCACCTCTC 474 * * * * * * ** * consensus_14993#0 CT--TTGTGAAGGCAATAAGAGGGAGCTCGCGTCCAATCCTTTGCTTTAGCCGCTGCAGT 933 consensus_14993#3 CT--TTGTGAAGGCAATAAGAGGGAGCTCGCGTCCAATCCTTTGCTTTAGCCGCTGCAGT 420 consensus_14993#1 TCAACGATCATGTCATCAATTTCAATTTCAGTTGCAACAATTTCAAGGTTCTGTCGGGAA 579 consensus_14993#2 TGAAATATAACTTCTAAAAAACCAAGG-CAGTTTAAAGAACT--GGTATATTGCTTAAGA 531 * * * ** * * * ** * * consensus_14993#0 AATCA-AGCTCTAAGCTTTCTCCTTTTTTTTCTCCCAAATCGATCGATCCTATGTAAATT 992 consensus_14993#3 AATCA-AGCTCTAAGCTTTCTCCTTTTTTTTCTCCCAAATCGATCGATCCTATGTAAATT 479 consensus_14993#1 GATTGCAGTTGCTTATCATATTCTGCTCTAGATTTGGGATAACGTAGGATTTCCCATGCC 639 consensus_14993#2 TTTTGCAATGTCATGACACAATCTTTCCATTGAGGGGGACAGATTCAGATTGGGACTCTT 591 * * ** * * consensus_14993#0 TCTTGAA-ATCTTGATCTTTGATGCTCTTGCTTTGAACTCGCGATCATATGTAAA----T 1047 consensus_14993#3 TCTTGAA-ATCTTGATCTTTGATGCTCTTGCTTTGAACTCGCGATCATATGTAAA----T 534 consensus_14993#1 TTTTGCACACTGAGAAATTCATTTCGCTCAC-TGGAAGACACCAATGGATTGAGAGCCAT 698 consensus_14993#2 GAGTTTATAGTCACAGATCTGTTACAATT---TTACATTTGGCATTGCATATTG---TTT 645 * * * * * * * * * * * ** * consensus_14993#0 TGATCGATCAAGCTGATGTGCTCTTGGTGTTCTTGAGTATTAGCATGGAAGCTCATCAGT 1107 consensus_14993#3 TGATCGATCAAGCTGATGTGCTCTTGGTGTTCTTGAGTATTAGCATGGAAGCTCATCAGT 594 consensus_14993#1 CTGTGCTTTGTCAGGATGTGTATTTAGTACAGCAGACTTATATGCTGCACGAATTTCATC 758 consensus_14993#2 TCACAGATTATCTAATTGATTATATGGATAAACTAAACATTTTAAGAAATAAACTTAAAA 705 * ** * * * * * * * consensus_14993#0 TCCTCTTCG-ATCAATCCT-----ATGTAAATTCCTTGAAA---CCTTAATCTTAATGTT 1158 consensus_14993#3 TCCTCTTCG-ATCAATCCT-----ATGTAAATTCCTTGAAA---CCTTAATCTTAATGTT 645 consensus_14993#1 ATA-TGTAGCATCTTTCCTCACGGATAGAACTTCGTACAAGGTCTCCTGGTTGGAAAAGT 817 consensus_14993#2 ATAGCTTAGAAAATGTGGTTT---AAACAATGCAGTAGAAGAAAGTTT--TCGAGAAAAC 760 * * * * * * ** * ** * * * consensus_14993#0 CTCTTCCTCACTTGATGCTCGTGCTTTCAACTTGCAATTCTATGTAAATTGATCGATCAA 1218 consensus_14993#3 CTCTTCCTCAAANNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 705 consensus_14993#1 TGCCTCCTTCAAGCATGTCTGAATAACTGTCTCTAGAAAGCAAAATAACGGCGAAGGTCT 877 consensus_14993#2 ATATTTTTAGAGGCATGATCAAATAAA-GTAGCCAAAAAGAACAGGGCCGCAGAGGGCAC 819 * * * * * consensus_14993#0 GTAGATGTTCTTGGTGTTCTTGAGTATTATTATAGCATGAAAGTTCATCAGCTCTCCTGC 1278 consensus_14993#3 AAAAACACT----GTCTTCCCG-------------------------------------- 723 consensus_14993#1 TGACGGCCGATGCAGCCTTGTGGATCGCAGGGTCGACTGCTTGCGCGGCGAAGTTGCGAC 937 consensus_14993#2 TTAT------TGCAAGATTATAGATTCATAGCATGACTTTAAATATGGTGATATAATGAT 873 * * consensus_14993#0 GCTTGTGAACCCATTTGTGTTTAAAAAAAAA----------------------------- 1309 consensus_14993#3 ------------------------------------------------------------ consensus_14993#1 GCGCGAGGCGGCGAGGGGAGGTGCGGCCGATGCGGGGTACGTGAATGGTTTCCGAACCTG 997 consensus_14993#2 CTACTCTTTCCAAAGGGGGGGC-------------------------------------- 895 consensus_14993#0 ------------------------------------------------------------ consensus_14993#3 ------------------------------------------------------------ consensus_14993#1 GGCCGCCGTCAACCGCTGGTCGAGGCGGCGGCCGGTGCGGCGGCGCAGCCGACGGGCAGA 1057 consensus_14993#2 ------------------------------------------------------------ consensus_14993#0 --------------------- consensus_14993#3 --------------------- consensus_14993#1 GAGGAGGAGGGGAGGGGCGGC 1078 consensus_14993#2 --------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||