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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15012#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 891 fasta sequence
[AGGGATGCACCCCCAATCACCACATTCTGGTCAGTTTGGCCAAGGATCATTCATGTCACCACAACAAATGGCAAATGGTCAGCTAGGAGGAACACAGCCGCGACAATCACCACAACCGCAGTCCGCACCGAATCTCCAATACGGAGGGATGATGATGTACCCCAATTCGATGCAAGTCAATCAGGGAGCTGGAATGTACTCCCAACCGATGTTTGGGGGACAGTTCTATGGCATGAGCCATCATCATCAGATGTATGCTGTTCAGATGGCTGGCTATGGATTTGGCCAGCAACCTGGAGCTTACTACATCCCGAATGCGGCGTATGCTTATGTTAGCGCGAATGAGCTTACCCAGAGGATGAATGCGGTTTCGGTTCAGGAAGGTAATTCACATGGTGGAGCAATGGCATCCAGGCCTGAAGATTCACTCTTTGGTGATCTTGTCAGCATTGCCAAGATGAAACAGAACAAACCTGCAGCTGGCAAGGTTGGTGGCTTGTAAGGATGAGTGATTGAGTGACTAGATTCATATTTTCTGGTCATTTGCAGCTGCAAAAACTTTTCCTGGCAGTACATAA-TTTTTTTCTAGTTTTGCAGAAAGATAATACATAATCCTTATCCTTATTGCCACTTTTTGTGCGACGCAAGAAGGCATACTACCCTATTGATGTAATTTCAGTTTAGGCAGGATTGTAGGGATATAAATTGGAAAGTAGGTTGAGCCTTGAGATGCTTCTGGTGCCTCATGGCAAGGTTGTTTATGTATAAATTCTGAAGTCATGTCATAATCATAGCAGTTTCATCAATAATATCCTTATGTATAAATGTCTGATAACAGG-TTACAGCAACCTTGAAACGTTCTTATTTACCCCCGTCATTTTTTTATCCTCA]
[+] EMBL CB096433 [AGGGATGCACCCCCAATCACCACATTCTGGTCAGTTTGGCCAAGGATCATTCATGTCACCACAACAAATGGCAAATGGTCAGCTAGGAGGAACACAGCCGCGACAATCACCACAACCGCAGTCCGCACCGAATCTCCAATACGGAGGGATGATGATGTACCCCAATTCGATGCAAGTCAATCAGGGAGCTGGAATGTACTCCCAACCGATGTTTGGGGGACAGTTCTATGGCATGAGCCATCATCATCAGATGTATGCTGTTCAGATGGCTGGCTATGGATTTGGCCAGCAACCTGGAGCTTACTACATCCCGAATGCGGCGTATGCTTATGTTAGCGCGAATGAGCTTACCCAGAGGATGAATGCGGTTTCGGTTCAGGAAGGTAATTCACATGGTGGAGCAATGGCATCCAGGCCTGAAGATTCACTCTTTGGTGATCTTGTCAGCATTGCCAAGATGAAACAGAACAAACCTGCAGCTGGCAAGGTTGGTGGCTTGTAAGGATGAGTGATTGAGTGACTAGATTCATATTTTCTGGTCATTTGCAGCTGCAAAAACTTTTCCTGGCAGTACATAATTTTTTTTCTAGTTTTGCAGAAAGATAATACATAATCCTTATCCTTATTGNCACTTTTTGTGCGACGCAAGAANGCATACTACCCTATTGATGTAATTTCAGNTTANGCAGGATTGTAGGGATATAAATTGGAAAGTANGTTGAGCCTTGAGATGCTTCTGGTGCCTCATGGCAAGGNTGGTTATGGATAAA TCTG AGTCATGNCATAATCATAGCAG TTCATCAATAA ATCCTTA GNNTAAAAGGCTGA NACAGG TTACAGCAACCTTGAAACGTTCT ]
[-] EMBL CB633005 [ CTGGTCAGTTTGGCCAAGGATCATTCATGTCACCACAACAAATGGCAAATGGTCAGCTAGGAGGAACACAGCCGCGACAATCACCACAACCGCAGTCCGCACCGAATCTCCAATACGGAGGGATGATGATGTACCCCAATTCGATGCAAGTCAATCAGGGAGCTGGAATGTACTCCCAACCGATGTTTGGGGGACAGTTCTATGGCATGAGCCATCATCATCAGATGTATGCTGTTCAGATGGCTGGCTATGGATTTGGCCAGCAACCTGGAGCTTACTACATCCCGAATGCGGCGTATGCTTATGTTAGCGCGAATGAGCTTACCCAGAGGATGAATGCGGTTTCGGTTCAGGAAGGTAATTCACATGGTGGAGCAATGGCATCCAGGCCTGAAGATTCACTCTTTGGTGATCTTGTCAGCATTGCCAAGATGAAACAGAACAAACCTGCAGCTGGCAAGGTTGGTGGCTTGTAAGGATGAGTGATTGAGTGACTAGATTCATATTTTCTGGTCATTTGCAGCTGCAAAAACTTTTCCTGGCAGTACATAA TTTTTTTCTAGTTTTGCAGAAAGATAATACATAATCCTTATCCTTATTGCCACTTTTTGTGCGACGCAAGAAGGCATACTACCCTATTGATGTAATTTCAGTTTAGGCAGGATTGTAGGGATATAAATTGGAAAGTAGGTTGAGCCTTGAGATGCTTCTGGTGCCCCATGGCAAGGTTGTTTATGTATAAATTCTGAAGTCATGTCATAATCATAGCAGTTTCATCAATAATATCCTTATGTATAAATGTCTGATAACAG ]
[-] EMBL CB631521 [ CAAGGATCATTCATGTCACCACAACAAATGGCAAATGGTCAGCTAGGAGGAACACAGCCGCGACAATCACCACAACCGCAGTCCGCACCGAATCTCCAATACGGAGGGATGATGATGTACCCCAATTCGATGCAAGTCAATCAGGGAGCTGGAATGTACTCCCAACCGATGTTTGGGGGACAGTTCTATGGCATGAGCCATCATCATCAGATGTATGCTGTTCAGATGGCTGGCTATGGATTTGGCCAGCAACCTGGAGCTTACTACATCCCGAATGCGGCGTATGCTTATGTTAGCGCGAATGAGCTTACCCAGAGGATGAATGCGGTTTCGGTTCAGGAAGGTAATTCACATGGTGGAGCAATGGCATCCAGGCCTGAAGATTCACTCTTTGGTGATCTTGTCAGCATTGCCAAGATGAAACAGAACAAACCTGCAGCTGGCAAGGTTGGTGGCTTGTAAGGATGAGTGATTGAGTGACTAGATTCATATTTTCTGGTCATTTGCAGCTGCAAAAACTTTTCCTGGCAGTACATAA TTTTTTTCTAGTTTTGCAGAAAGATAATACATAATCCTTATCCTTATTGCCACTTTTTGTGCGACGCAAGAAGGCATACTACCCTATTGATGTAATTTCAGTTTAGGCAGGATTGTAGGGATATAAATTGGAAAGTAGGTTGAGCCTTGAGATGCTTCTGGTGCCCCATGGCAAGGTTGTTTATGTATAAATTCTGAAGTCATGTCATAAGCATAGCAGTTTCATCAATAATATCCTTATGTA ]
[-] EMBL CB673460 [ CGCAGTCCGCACCGAATCTCCAATACGGAGGGATGATGATGTACCCCAATTCGATGCAAGTCAATCAGGGAGCTGGAATGTACTCCCAACCGATGTTTGGGGGACAGTTCTATGGCATGAGCCATCATCATCAGATGTATGCTGTTCAGATGGCTGGCTATGGATTTGGCCAGCAACCTGGAGCTTACTACATCCCGAATGCGGCGTATGCTTATGTTAGCGCGAATGAGCTTACCCAGAGGATGAATGCGGTTTCGGTTCAGGAAGGTAATTCACATGGTGGAGCAATGGCATCCAGGCCTGAAGATTCACTCTTTGGTGATCTTGTCAGCATTGCCAAGATGAAACAGAACAAACCTGCAGCTGGCAAGGTTGGTGGCTTGTAAGGATGAGTGATTGAGTGACTAGATTCATATTTTCTGGTCATTTGCAGCTGCAAAAACTTTTCCTGGCAGTACATAA TTTTTTCTAGTTTTGCAGAAAGATAATACATAATCCTTATCCTTATTGCCACTTTTTGTGCGACGCAAGAAGGCATACTACCCTATTGATGTAATTTCAGTTTAGGCAGGATTGTAGGGATATAAATTGGAAAGTAGGTTGAGCCTTGAGATGCTTCTGGTGCCTCATGGCAAGGTTGTTTATGTATAAATTCTGAAGTCATGTCATAATCATAGCAGTTTCATCAATAATATCCTTATGTATAAATGTCTGATAACAGGTTTACAGCAACCTTAAAGCGTTCTTATTTACCCCCGTCATTTTTTTATCCTCA]
[+] EMBL AU082623 [ ATTGANTGACTAGATTCATATTTTCTGGTCATTNGCAGCTGNAAAAACTTTTCCTGGCAGTACATAA TTTTTTCTAGTTTTGCAGAAAGATAATACATAATCCTTATCCTTATTGCCANTTTTTGTGCGNCGCAAGAAGGCATACTNCCCTATTGATGTAATTTCAGTTTAGGCAGGATTGTAGGGATATAAATTGGAAAGTAGGTTGANCCTTGAGATGCTTCTGGTGCCTCATGGCAAGGTTGTTTATGTATAAATTCTGAAGTCATGTCATAATCATAGCAGTTTCATCAATAATATCCTTATGTAAAAA ]
consensusID : consensus_15012#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 631 fasta sequence
[GCCTCCGCATCTCCAGCGCCCCCAAACCCTAGCTCTCTCCTCCTCCGCCGCCGCGCCGATCGATCAGGAGTAGCAATGGCCAGGTTCTCCGCAGCCGCCGTGATCGCCTTCGCCGTGGTGGCCGCGGCCGCGCTGGCCACCGTGGCGTCCGCCGCCGACGCGCCGGCACCCGCCCCGACCTCCGGCGCGGTGGCGGCCGTCTC-GGCGCCTCTCTCCGTGTG-CTGCGTCGCCGGCCTCCTCCTCGCCTTGCTCCGCCACTGAAG-CGTTCTTCTTCCTCTGAATGCTTTTGCTTCAG-ATCTAGCAGTACAGTGGT-CGTGCGAGTCTTACTTAGCATTTAGTATT-AGAGCTTAGTAGCGATGATGACGTGTGCGTGTGGAGGCATTGTTTTTTGGTTGGATCTATGGGGTTTTACGGGTTGGTTTGGAGTGAGGAGGATTTGAGATGGGGATTATTAGTATCTGTTAGACTGTTACTACTACTGGTTTATTTATTTTGGTAGTCTTTTGGTGTGATGGGTTTGGGATCTGTGTATTTACCACTTGAGTACACTGTTCTGAGAGATCGTTATTGATATTATTATGATTATTATTATTACGTATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CA753460 [GCCTCCGCATCTCCAGCGCCCCCAAACCCTAGCTCTCTCCTCCTCCGCCGCCGCGCCGATCGATCAGGAGTAGCAATGGCCAGGTTCTCCGCAGCCGCCGTGATCGCCTTCGCCGTGGTGGCCGCGGCCGCGCTGGCCACCGTGGCGTCCGCCGCCGACGCGCCGGCACCCGCCCCGACCTCCGGCGCGGTGGCGGCCGTCTCGGGCGCCTCTCTCCGTGTG CTGCGTTGGCGGCCTCCTCCTCGCCTTGCTCCGCCACTGAAG CGTTCTTCTTCCTCTGAATGCTTTTGCTTCAG ATCTAGCAGTACAGTGGT CGTGCGAGTCTTACTTAGCATTTAGTATT AGAGCTTAGTAGCGATGATGACGTGTGCGTGTGGAGGCATTGTTTTTTGGTTGGATCTATGGGGTTTTACGGGTTGGTTTGGAGTGAGGAGGATTTGAGATGGGGATTATTAGTATCTGTTAGACTGTTACTACTACTGGTTTATTTATTTTGGTAGTCTTTTGGTGTGATGGGTTTGGGATCTGTGTATTTACCACTTGAGTACACTGTTCTGAGAGATCGTTATTGATATTATTATGATTATTATTATTACGTA AAAAAAAAAAAAAGAAAAAAA ]
[+] EMBL AU161506 [ CGTGGCGTTCGCCGCCGACGCGCCGGCACCCGCCCCGACCTCCGGCGCGGTGGCGGCCGTCTC GGCGCCTCTCTCCGTGTG CTGCGTCGCCGGCCTCCTCCTCGCCTTGCTCCGCCACTGAAG CGTTCTTCTTCCTCTGAATGCTTTTGCTTCAG ATCTAGCAGTACAGTGGT CGTGCGAGTCTTACTTAGCATTTAGTATT AGAGCTTAATAGCGATGATGACGTGTGCGTGTGGAGGCATTGTTTTTTGGTTGGATCTATGGGGTTTTACGGGTTGGTTTGGA ]
[+] EMBL C73453 [ CGTGGCGTCCGCCGCCGACGCGCCGGCACCCGCCCCGACCTCCGGCGCGGTGGCGGCCGTCTC GGCGCCTCTCTCCGTGTG CTGCGTCGCCGGCCTCCTCCTCGCCTTGCTCCGCCACTGAAG CGTTCTTCTTCCTCTGAATGCTTTTGCTTCAG ATCTAGCAGTACAGTGGT CGTGCGAGTCTTACTTAGCATTTAGTATT AGAGCTTAGTAGCGATGATGACGTGTGCGTGTGGAGGCATTGTTTTTTGGTTGGATCTATGGGGTTTTACGGGTTGGTTTGGAGTGAGGAGGATTTGAGATGGGGATTATTAGTATCTGTTAGACTGTTACTACTACTGGTTTATTTATTTTGGTAGTCTTTTGGTGTGA ]
[-] EMBL OSC9321 [ CCGAC CGGTGGC GCCGTCTC GGCGCCTCTCTCCGTGTG CT CGTCGCCGGCCTCCTCCTCGCCTNG CCGCCACTGAAG CGTTCTTCNTCCTCTGAATGCTTTTGCTTCAG ATCTAGCAGTACAGTGGT CGTGCGAGTCTTACTTAGCATTTAGTAAT AGAGCTTAGTAGCGATGATGACGTGTGCGTGTGGAGGCATTGTTTTTTGGTTGGATCTATGGGGTTTTACGGGTTGGTTTGGAGTGAGGAGGATTTGAGATGGGGATTATTAGTATCTGTTAGACTGTTACTACTACTGGTTTATTTATTTTGGTAGTCTTTTGGTGTGATGGGTTTGGGATCTGTGTATTTACCACTTGAGTACACTGTTCTGAGAGATCGTTATTGATATTATTATGATTATTATTA ]
[+] EMBL AU184803 [ CGCCTCTCTCCGTGTG CTGCGTCGCCGGCCTCCTCCTCGCCTTGCTCCGCCACTGAAG CGTTCTTCTTCCTCTGAATGCTTTTGCTTCAG ATCTAGCAGTACAGTGGT CGTGCGAGTCTTACTTAGCATTTAGTATT AGAGCTTAGTAGCGATGATGACGTGTGCGTGTGGAGGCATTGTTTTTTGGTTGGATCTATGGGGTTTTACGGGTTGGTTTGGAGTGAGGAGGATTTGAGATGGGGATTATTAGTATCTGTTAGACTGTTACTACTACTGGTTTATTTATTTTGGTAGTCTTTTGGTGTGATGGGTTTGGGATCTGTGTATTTACCACTTGAGTACACTGTTCTGAGAGATCGTTATTGATATTATTATGATTATTATTATTAaaaaa ]
[+] EMBL AU029918 [ tccgTCTCCGTGTGTCTGCGTCGCCGGCCTCCTCCTCGCCTTGCTCCGCCACTGAAGCCGTTCTTCTTCCTCTGAATGCTTTTGCTTCAGTATCTAGCAGTACAGTGGTCCGTGCGAGTCTTACTTAGCATTTAGTATT AGAGCTTAGTAGCGATGATGACGTGTGCGTGTGGAGGCATTGTTTTTTGGTTGGATCTATGGGGTTTTACGGGTTGGTTTGGAGTGAGGAGGATTTGAGATGGGGATTATTAGTATCTGTTAGACTGTTACTACTACTGGTTTATTTATTTTGGTAGTCTTTTGGTGTGATGGGTTTGGGATCTGTGTATTTACCACTTGAGTACACTGTTCTGAGAGATCGTTATTGATATTATTATGATTATTATTATTACGTATTAAAAAAAAA ]
[+] EMBL AU032868 [ CAG ATCTAGCAGTACAGTGGC CGTGCGAGNCTTACTTAGCATTTAGTATT AGAGCTTAGTANCGATGATGACGTGTNCGTGTGGAGGCATTGTTTTTTGGTTGGANCTATGGGGTTTTACGGGTTGGTTTGGAGTGAGGAGGATTTGAGATGGGGATTATTAGTATCTGTTAGACTGTTACTACTACTGGTTTATTTATTTTGGTAGTCTTTTGGTGTGATGGGTTTGGGATCTGTGTATTTACCACTTGAGTACACTGTTCTGAGAGATCGTTATTGATATTATTATGATTATTATTATTACGTATTAAAA ]
[-] EMBL C73807 [ TTAGTATTAAGAGCTTNGTAGCGATGATNACGTGTGCGTGTGGAGGCATTGTTTTTTGGTTGGATCTATGGGGTTTTACGGGTTGGTTTGGAGTGAGGAGGATTTGAGATGGGGATTATTAGTATCTGTTAGACTGTCACTACTACTGGTTTATTTATTTTGGTAGTCTTTTGGTGTGATGGGTTTGGGATCTGTGTATTTACCACTTGAGTACACTGTTCTGAGAGATCGTTATTGATATTATTATGATTATTATTATNACGTATTAAAAAAcanacca ]
[+] EMBL CA766235 [ GAGGACGAGACAAGGGGA TNCTAGTATCTGTTAGACTGTTACTACTACTGGTTTATTTATTTTGGTAGTCTTTTGGTGTGATGGGTTTGGGATCTGTGTATTTACCACTTGAGTACACTGTTCTGAGAGATCGTTATTGATATTATTATGATTATTATTATTACGTATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA ]
[+] EMBL AU161505 [ ATTAGTATCTGTTANACTGTTACTACTACTGGTTTATTTATTTTGGTAGTCTTTTGGTGTGATGGGTTTGGGATCTGTGTATTTACCNCTTNAGTACNCTGTTCTNANAGATCGTTATTGATATTATTATGATTATTATTATTACGTATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_15012#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 585 fasta sequence
[ATCATCATCAGATGTATGCTGTTCAGATGGCTGGCTATGGATTTGGCCAGCAACCTGGAGCTTACTACATCCCGAATGCGGCGTATGCTTATGTTAGCGCGAATGAGCTTACCCAGAGGATGAATGCGGTTTCGGTTCAGGAAGGTAATTCACATGGTGGAGCAATGGCATCCAGGCCTGAAGATTCACTCTTTGGTGATCTTGTCAGCATTGCCAAGATGAAACAGAACAAACCTGCAGCTGGCAAGGTTGGTGGCTTGTAAGGATGAGTGATTGAGTGACTAG-ATTCATATTTTCTGGTCATTTGCAGCTGCAAAAACTTTTCCTGGCAGTACATAATTTTTTCTAGTTTTGCAGAAAGATAATACATAATCCTTATCCTTATTGCCACTTTTTGTGCGACGCA-AGAAGGCATACTACCCTATTGATGTAATTTCAGTTTAGGCAGGATTGTAGGGATATAAATTGGAAAGTAGGTTGAGCCTTGAGATGCTTCTGGTGCCTCATGGCAAGGTTGTTTATGTATAAATTCTGAAGTCATGTCATAATCATAGCAGTTTCATCAACAAAAAAAAAAAAAAAAAA]
[-] EMBL CF326290 [ATCATCATCAGATGTATGCTGTTCAGATGGCTGGCTATGGATTTGGCCAGCAACCTGGAGCTTACTACATCCCGAATGCGGCGTATGCTTATGTTAGCGCGAATGAGCTTACCCAGAGGATGAATGCGGTTTCGGTTCAGGAAGGTAATTCACATGGTGGAGCAATGGCATCCAGGCCTGAAGATTCACTCTTTGGTGATCTTGTCAGCATTGCCAAGATGAAACAGAACAAACCTGCAGCTGGCAAGGTTGGTGGCTTGTAAGGATGAGTGATTGAGTGACTAG ATTCATATTTTCTGGTCATTTGCAGCTGCAAAAACTTTTCCTGGCAGTACATAATTTTTTCTAGTTTTGCAGAAAGATAATACATAATCCTTATCCTTATTGCCACTTTTTGTGCGACGCA AGAAGGCATACTACCCTATTGATGTAATTTCAGTTTAGGCAGGATTGTAGGGATATAAATTGGAAAGTAGGTTGAGCCTTGAGATGCTTCTGGTGCCTCATGGCAAGGTTGTTTATGTATAAATTCTGAAGTCATGTCATAATCATAGCAGTTTCATCAACAAAAAAAAAAAAAAAAAA]
[-] EMBL CB663929 [ GTATGTTTATGTTAGCGTGAATGAGCTTACCCAGAGGATGAATGAGGTTTCGGTTCAGGAAGGTAATTCTCATGGTGGAGCAATGGCATCCAGGCCTGAAGATTCACTCTTTGGTGATATTGTCAGCATTGCCAAGATGAAACAGAACAAACCTGCAGCTGGCAAGGTTGGTGGGTTGTAAGGAAGAGTGATTGAGTGACTAGCATTCATATTTTGTGGTCATTTGCAGTTGCAAAAACTTTTCCTGGCAGTACATAATTTTTTCTAGTTTTGCAGAAAGATAATCCATAATCTTTATCCTTATTGCCTCTTTTTGTGGGACGCACAGAAGGCATGCTACCCTATCGAAGTAATTTCAGTTTAGGCAGGATTGTAGGGATATAAATTTGAAAGTAGGTTGAACCTTGAGATGCTTTTGGTGCCCCATGGCA ]
consensusID : consensus_15012#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 537 fasta sequence
[CGGCCGCTCCAACATCATAATGCGGTTTCGGTTCAGGAAGGTAATTCGCAGTGGTGGAGCAATGGCATCCAGGCCTGAAGATTCGCTCTTTGGTGATCTTGTCAGCATTGGCAAAATGACACATCCCAAACCCGTAGCTGGCAAGGTTGGTGGCTTGTAAGTATCACGTTAGTTAGTAGTAGTAACTCATATATTGTGGTCATATCCCTCTGGCATCCTCTTCTCGTGGTAGTAACCCGTATTTTCCATGATAGATCCAACCAAGAAACAATGCCTCCACACGTACACGTCACACTACCACCACCACCATCAATCGCTACTAAGCTCTAATACTAAATGAATGCTAAGTAAGACTCGCACGACCACTGTACTGCTAGATCTGCAGCAAAAGCATTCAGAGGAAGAGGAAGAACGCTTCAGTGGCGGAGGAACGCGAGGAGGAGGCCGGCGACGCAGCACTCGGAGAGCGGCGCCGAGACGGCCGCCTCCGCGCCGGAGGTCGGGGCGGGTGCCGGCGCGTCGGCGGCGGACGCCACG]
[-] EMBL BI306401 [CGGCCGCTCCAACATCATAATGCGGTTTCGGTTCAGGAAGGTAATTCGCAGTGGTGGAGCAATGGCATCCAGGCCTGAAGATTCGCTCTTTGGTGATCTTGTCAGCATTGGCAAAATGACACATCCCAAACCCGTAGCTGGCAAGGTTGGTGGCTTGTAAGTATCACGTTAGTTAGTAGTAGTAACTCATATATTGTGGTCATATCCCTCTGGCATCCTCTTCTCGTGGTAGTAACCCGTATTTTCCATGATAGATCCAACCAAGAAACAATGCCTCCACACGTACACGTCACACTACCACCACCACCATCAATCGCTACTAAGCTCTAATACTAAATGAATGCTAAGTAAGACTCGCACGACCACTGTACTGCTAGATCTGCAGCAAAAGCATTCAGAGGAAGAGGAAGAACGCTTCAGTGGCGGAGGAACGCGAGGAGGAGGCCGGCGACGCAGCACTCGGAGAGCGGCGCCGAGACGGCCGCCTCCGCGCCGGAGGTCGGGGCGGGTGCCGGCGCGTCGGCGGCGGACGCCACG]
consensusID : consensus_15012#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 512 fasta sequence
[CGTGGCGTCCGCCGCCGACGCGCCGGCACCCGCCCCGACCTCCGGCGCGGTGGCGGCCGTCTCGGCGCCGCTCTCCGTGTGCTGCGTCGCCGGCCTCCTCCTCGCGTTCCTCCGCCACTGAAGCGTTCTTCCTCTTCCTCTGAATGCTTTTGCTTCAGATCTAGCAGTACAGTGGTCGTGCGAGTCTTACTTAGCATTCATTTAGTATTAGAGCTTAGTAGCGATTGATGGTGGTGGTGGTAGTGTGACGTGTACGTGTGGAGGCATTGTTTTTTGGTTGGATCTATCATGGTTTTTACGGGTTAGTTTGGCGTGAGGAGGATTTGAGAGGGATATTACTACTATTATCTGTTACTACTACTACTAGTGGTTTATTTATTTTGGTAGCCTTTTGGTGTGATGGGTTTGGGATCTGTGTATTTACCACTGAGTACACTGTTCTGAGAGATCGTTATTGATATTAATATATTATTATGATGATTACTACGTATTAAAAAAACAAAACAAAAAAC]
[+] EMBL CB965651 [CGTGGCGTCCGCCGCCGACGCGCCGGCACCCGCCCCGACCTCCGGCGCGGTGGCGGCCGTCTCGGCGCCGCTCTCCGTGTGCTGCGTCGCCGGCCTCCTCCTCGCGTTCCTCCGCCACTGAAGCGTTCTTCCTCTTCCTCTGAATGCTTTTGCTTCAGATCTAGCAGTACAGTGGTCGTGCGAGTCTTACTTAGCATTCATTTAGTATTAGAGCTTAGTAGCGATTGATGGTGGTGGTGGTAGTGTGACGTGTACGTGTGGAGGCATTGTTTTTTGGTTGGATCTATCATGGTTTTTACGGGTTAGTTTGGCGTGAGGAGGATTTGAGAGGGATATTACTACTATTATCTGTTACTACTACTACTAGTGGTTTATTTATTTTGGTAGCCTTTTGGTGTGATGGGTTTGGGATCTGTGTATTTACCACTGAGTACACTGTTCTGAGAGATCGTTATTGATATTAATATATTATTATGATGATTACTACGTATTAAAAAAACAAAACAAAAAAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15012#0 AGGGATGCACCCCCAATCACCACATTCTGGTCAGTTTGGCCAAGGATCATTCATGTCACC 60
consensus_15012#2 ------------------------------------------------------------
consensus_15012#3 ------------------------------------------------------------
consensus_15012#1 ------------------------------------------------------------
consensus_15012#4 ------------------------------------------------------------
consensus_15012#0 ACAACAAATGGCAAATGGTCAGCTAGGAGGAACACAGCCGCGACAATCACCACAACCGCA 120
consensus_15012#2 ------------------------------------------------------------
consensus_15012#3 ------------------------------------------------------------
consensus_15012#1 ------------------------------------------------------------
consensus_15012#4 ------------------------------------------------------------
consensus_15012#0 GTCCGCACCGAATCTCCAATACGGAGGGATGATGATGTACCCCAATTCGATGCAAGTCAA 180
consensus_15012#2 ------------------------------------------------------------
consensus_15012#3 ------------------------------------------------------------
consensus_15012#1 ----------------------------------------------------------GC 2
consensus_15012#4 ------------------------------------------------------------
consensus_15012#0 TCAGGGAGCTGGAATGTACTCCCAACCGATGTTTGGGGGACAGTTCTATGGCATGAGCCA 240
consensus_15012#2 -----------------------------------------------------------A 1
consensus_15012#3 ------------------------------------------------------------
consensus_15012#1 CTCCGCATCTCCAGCGCCCCCAAACCCTAGCTCTCTCCTCCTCCGCCGCCGCGCCGATCG 62
consensus_15012#4 ------------------------------------------------------------
consensus_15012#0 TCATCATCAGATGTATGCTGTTCAGATGGCTGGCTATGGATTTGGCCAGCAACCTGGAGC 300
consensus_15012#2 TCATCATCAGATGTATGCTGTTCAGATGGCTGGCTATGGATTTGGCCAGCAACCTGGAGC 61
consensus_15012#3 ------------------------------------------------------------
consensus_15012#1 ATCAGGAGTAGCAATGGCCAGGTTCTCCGCAGCCGCCGTGATCGCCTTCGCCGTGGTGGC 122
consensus_15012#4 ------------------------------------------------------------
consensus_15012#0 TTACTACATCCCGAATGCGGCGTATGCTTATGTTAGCGCGAATGAGCTTACCCAGAGGAT 360
consensus_15012#2 TTACTACATCCCGAATGCGGCGTATGCTTATGTTAGCGCGAATGAGCTTACCCAGAGGAT 121
consensus_15012#3 ------------------------------------------CGGCCGCTCCAACATCAT 18
consensus_15012#1 CGCGGCCGCGCTGGCCACCGTGGCGTCCGCCGCCGACGCGCCGGCACCCGCCCCGACCTC 182
consensus_15012#4 ------------------CGTGGCGTCCGCCGCCGACGCGCCGGCACCCGCCCCGACCTC 42
* * ** *
consensus_15012#0 GAATGCGGTTTCGGT--TCAGGAAGGTAATTCACA--TGGTGGAGCAATGGCATCCAGGC 416
consensus_15012#2 GAATGCGGTTTCGGT--TCAGGAAGGTAATTCACA--TGGTGGAGCAATGGCATCCAGGC 177
consensus_15012#3 -AATGCGGTTTCGGT--TCAGGAAGGTAATTCGCAG-TGGTGGAGCAATGGCATCCAGGC 74
consensus_15012#1 CGGCGCGGTGGCGGCCGTCTCGGCGCCTCTCTCCGTGTGCTGCGTCGCCGGCCTCCTCCT 242
consensus_15012#4 CGGCGCGGTGGCGGCCGTCTCGGCGCCGCTCTCCGTGTGCTGCGTCGCCGGCCTCCTCCT 102
***** *** ** * * * * ** ** * *** ***
consensus_15012#0 CTGAAGATTCACTCTTTGGTGATCTTGTCAGCATTGCCAAGATGAAACAGAA-CAAACCT 475
consensus_15012#2 CTGAAGATTCACTCTTTGGTGATCTTGTCAGCATTGCCAAGATGAAACAGAA-CAAACCT 236
consensus_15012#3 CTGAAGATTCGCTCTTTGGTGATCTTGTCAGCATTGGCAAAATGACACATCC-CAAACCC 133
consensus_15012#1 CGCCTTGCTCCGCCACTGAAGCGTTCTTC---TTCCTCTGAATGCTTTTGCTTCAGATCT 299
consensus_15012#4 CGCGTTCCTCCGCCACTGAAGCGTTCTTCCTCTTCCTCTGAATGCTTTTGCTTCAGATCT 162
* ** * ** * * ** * * *** ** * *
consensus_15012#0 GCAGCTGGCAAGGTTG-GTGGCTTGTAAGGATGA-GTGATTGAGTGACTA-GATTCATAT 532
consensus_15012#2 GCAGCTGGCAAGGTTG-GTGGCTTGTAAGGATGA-GTGATTGAGTGACTA-GATTCATAT 293
consensus_15012#3 GTAGCTGGCAAGGTTG-GTGGCTTGTAAGTATCACGTTAGTTAGTAGTAGTAACTCATAT 192
consensus_15012#1 AGCAGTACAGTGGTCGTGCGAGTCTTACTTAGCA-TT----TAGTATTAGAGCTTAGTAG 354
consensus_15012#4 AGCAGTACAGTGGTCGTGCGAGTCTTACTTAGCA-TTCATTTAGTATTAGAGCTTAGTAG 221
* *** * * * * ** * * * *** * **
consensus_15012#0 TTTCTGGTCATT-TGCAGCTG-CAAAAACTTTTCCTGGCAGTACATAATTTTTTTCTAGT 590
consensus_15012#2 TTTCTGGTCATT-TGCAGCTG-CAAAAACTTTTCCTGGCAGTACATAATTTTTT-CTAGT 350
consensus_15012#3 ATTGTGGTCATA-TCCCTCTGGCATCCTCTTCTCGTGGTAGTAACCCGTATTTTCCATGA 251
consensus_15012#1 CGATGA------------------TGACGTGTGCGTGTGGAGGCATTGTTTTTT---GGT 393
consensus_15012#4 CGATTGATGGTGGTGGTGGTAGTGTGACGTGTACGTGTGGAGGCATTGTTTTTT---GGT 278
* * ** * **** *
consensus_15012#0 TTTGCAGAAAGATAATACATAATCCTTATCCTTAT-TGCCACTTTTTGTGCGACGCAAGA 649
consensus_15012#2 TTTGCAGAAAGATAATACATAATCCTTATCCTTAT-TGCCACTTTTTGTGCGACGCAAGA 409
consensus_15012#3 TAGATCCAACCAAGAAACAATGCCTCCACACGTACACGTCACACTACCACCACCACCATC 311
consensus_15012#1 TGGATCTAT--------G--GGGTTTTACGGGTTGGTTTGGAGTGAGGAGGATTTGAGAT 443
consensus_15012#4 TGGATCTAT--------CATGGTTTTTACGGGTTAGTTTGGCGTGAGGAGGATTTGAGAG 330
* * * *
consensus_15012#0 AGGCA-TACTACCCTATTGATGTAATTTCAGTTTAGGCAGGATTGTAGGGATATAAATTG 708
consensus_15012#2 AGGCA-TACTACCCTATTGATGTAATTTCAGTTTAGGCAGGATTGTAGGGATATAAATTG 468
consensus_15012#3 AATCGCTACTAAGCTCTAATACTAAATGAATGCTAAGTAAGACT---CGCACGACCACTG 368
consensus_15012#1 GGGGATTATTAGTATCTGTTAG-ACTGTTACTACTACTGGTTTATTTATTTTGGTAGTCT 502
consensus_15012#4 GGATATTACTACTATTATCTGTTACTACTACTACTAGTGGTTTATTTATTTTGGTAGCCT 390
** ** * * *
consensus_15012#0 GAAAGTAGGTTGAGCCTTGAGATGCTTCTGGTGCCTCATGGCAAGGTTGT--TTATGTAT 766
consensus_15012#2 GAAAGTAGGTTGAGCCTTGAGATGCTTCTGGTGCCTCATGGCAAGGTTGT--TTATGTAT 526
consensus_15012#3 TACTGCTAGATCTGCAGCAAAAGCATTCAGAGGAAGAGGAAGAACGCTTCAGTGGCGGAG 428
consensus_15012#1 TTTGGTGTGATGGGTTTGGGATCTGTGTATTTACCACTTGAGTACACTGTTCTGAGAGAT 562
consensus_15012#4 TTTGGTGTGATGGGTTTGGGATCTGTGTATTTACCACT-GAGTACACTGTTCTGAGAGAT 449
* * * * * * * * *
consensus_15012#0 AAATTCTGAAGTCA---TGTCATAATCATAGCAGTTTCATCAATAATATCCTTATGTATA 823
consensus_15012#2 AAATTCTGAAGTCA---TGTCATAATCATAGCAGTTTCATCAACAAAAAAAAAAAAAAAA 583
consensus_15012#3 GAACGCGAGGAGGA---GGCCGGCGACGCAGCA-CTCGGAGAGCGGCGCCGAGACGGCCG 484
consensus_15012#1 CGTTATTGATATTA-----TTATGATTATTATTATTACGTATTAAAAAAAAAAAAAAAAA 617
consensus_15012#4 CGTTATTGATATTAATATATTATTATGATGATTACTACGTATTAAAAAAACAAAACAAAA 509
* * *
consensus_15012#0 AATGTCTGATAACAGGTTACAGCAACCTTGAAACGTTCTTATTTACCCCCGTCATTTTTT 883
consensus_15012#2 AA---------------------------------------------------------- 585
consensus_15012#3 CCTCCGCGCCGGAGGTCGGGGCGGGTGCCGGCGCGTCGGCGGCGGACGCCACG------- 537
consensus_15012#1 AAAAAAAAAAAAAA---------------------------------------------- 631
consensus_15012#4 AAC--------------------------------------------------------- 512
consensus_15012#0 TATCCTCA 891
consensus_15012#2 --------
consensus_15012#3 --------
consensus_15012#1 --------
consensus_15012#4 --------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||