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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15029#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 2208 fasta sequence
[CTCCCACCTGACTCGTTCTAATCGGCGAAGAGAAACCCACACAAGAGGAAGATGGCGGCGCCGGCGACCGGCGGCGGGATCTCCGCCGACGTCCCCATCCTCCACTCGGAGAACCTCACCAGCAACGTCAAATCCATCTACTACAGGTTCCGCTCGTTCTCTTCCCCCCCCCCCCCCCCCCCCCAACCAAAGTTTAGAATTCGATCTGATCTGATAAGTAGGGTCATGCTTATGTCTGTTCGATTGGATCTGGGATTTATGCGACGACATGGTTTGATCTGCTCAGATTAGCCCTAATTCTTTCGATTCAATCCGGAACCGTGCGACCTGGTAGTTTCACTGTAGGCATGCTTCCGCTCTTCTTGCGGCAATTTCGAAATCTCGGGGTGCAGTTTAGGATCAAAATCTAAGTACTATGAATAATAAGAAAAGGATCAAGTAATTCTGTGGGCCAGTTCATACTGCCAGAAACTGTGGGTCAAATTGCACACTTACACTAGGATCTACTAAAATTAGAGTAATCAGGCTTCATGAATCAACTGAAAGTTTTCAATGTTTACATGCTTTTCTACTTCATGCTCAGATAGATGCTAGATACCTCCCATTAACTATTAACTCTTTTCGTAACCCTTTCAGCAATTCTAGTCATTGATGATTATTTTTGACTGCTTCACTTTTATACCAAGATGGCAAGGTGATATGTCTTAACCGTGAGGATTGATTTTGCGTTGCAGTCGGACATTCTTGTCAATTATCAGTGGAGTTGTTGCCGGAATCTGGGGATTCACAGGCTTGATGGGATTCGTGTTCTACCTTCTTGTAATGATGGTGGCATCCCTTGGGCTTTTGCTGAAGGCCAAATTTTCAATTCATACATACTTTGACAGCTGGAACAGGATTTTGATTGAAGGAGTTTTTGGTGGCCTTATGGTAAGCCATACTGGAGCTGTAACATTGTGATGCACACCTTTATTTCCATAAAACTTGAATGTCCAGATCATTCAACATGATTTACATGAACTTGTATCTTTCATGTTTAATCTATATTCTATGTTATTATGAAGCATGGGATGATGGGAAGATTGATCATTTTAGAAAGTTGATGAATGTGGAACATCCCTTAACAATCTGTTCGGGTTTGGCATTTTAACCAAATTGTTAGAAACCTCCTAGTTAGGAATAGTGTGACATTATCATGGATCTTCCTAGCTGTTAAAAGGTGGCCTGGTTTGGTGGGAGAATACAGATTTTTGATGGAAGGAGTATAAAACATTGGGAGCTTCATACCCTAACTAATGATTCACATCTCAATTGTTACTGTTGACTGTTGGTAAATGTTCTCAAGTTATACAACCACATTTTCTTAACTATATGTTTGGTGTTGCTAGTATTCTAATATCAATATAGGATTCTATTGCCTCAATGTATAGTTCATCACTAGATTATTTCCTCAAATTTCTTCATGATAATGAGCTTTATCCTGTTTTGGATGGTGGCCTAACATTATTTCCTTGCTTTTTTTGCAGTCTTTTGTGCTGTTTTGGACGTATCCTTGATGCTGTAAATATTATTGCTATTTTCAATTTTCCATATATACACAAACCATCTAGTATTTCTTATTCAGTATAGGTGTCAGGCAAGGTCTGATTCGATTACTAGTATAATGGCTCACCACCATAGAACCATACTAAAGCCACATAACTGAGAGTATGTAAATCATTATTATGTGAGGCCATAGCATGAATTTGAGGTAGACCATTGTGGTTATACATTTGAAGATGCCATATAAATTATATAATGCATGCCAATTTTTATGTTTGAGTTTGTCCTTAACAATGAACAGATTTGCGTATGATATTGTGCACATCTTCTGATGCACGGCATAAAGAACTCAACTCCGAAGACTTGAAGGGAGCTGTGGGGTTTCTCCTTGAACTGAATTAACGTGTAACCGCACCAACCCTGGAGGACTACATTCGTTGGACTGCTGTCCTGTTTTGTTCCT---TTTTTTTCCACTCCACATGTATCAGTTATAGCTCTGTACTTTAGAAAGAT-GCAAGCTTATTAAGTTTAATNTACAAATTGATGTAGAAGTGAATCCAATTGCTGGCAAGTATGGTGCTTGATCTTTTGAACATCAGAACTTGCTAGGTAGGGGACAACTGGTCATTGATACATCTATTGCTGCCCAGCGTGCTGATACTAAAA]
[+] EMBL AK069481 [CTCCCACCTGACTCGTTCTAATCGGCGAAGAGAAACCCACACAAGAGGAAGATGGCGGCGCCGGCGACCGGCGGCGGGATCTCCGCCGACGTCCCCATCCTCCACTCGGAGAACCTCACCAGCAACGTCAAATCCATCTACTACAGGTTCCGCTCGTTCTCTTCCCCCCCCCCCCCCCCCCCCCAACCAAAGTTTAGAATTCGATCTGATCTGATAAGTAGGGTCATGCTTATGTCTGTTCGATTGGATCTGGGATTTATGCGACGACATGGTTTGATCTGCTCAGATTAGCCCTAATTCTTTCGATTCAATCCGGAACCGTGCGACCTGGTAGTTTCACTGTAGGCATGCTTCCGCTCTTCTTGCGGCAATTTCGAAATCTCGGGGTGCAGTTTAGGATCAAAATCTAAGTACTATGAATAATAAGAAAAGGATCAAGTAATTCTGTGGGCCAGTTCATACTGCCAGAAACTGTGGGTCAAATTGCACACTTACACTAGGATCTACTAAAATTAGAGTAATCAGGCTTCATGAATCAACTGAAAGTTTTCAATGTTTACATGCTTTTCTACTTCATGCTCAGATAGATGCTAGATACCTCCCATTAACTATTAACTCTTTTCGTAACCCTTTCAGCAATTCTAGTCATTGATGATTATTTTTGACTGCTTCACTTTTATACCAAGATGGCAAGGTGATATGTCTTAACCGTGAGGATTGATTTTGCGTTGCAGTCGGACATTCTTGTCAATTATCAGTGGAGTTGTTGCCGGAATCTGGGGATTCACAGGCTTGATGGGATTCGTGTTCTACCTTCTTGTAATGATGGTGGCATCCCTTGGGCTTTTGCTGAAGGCCAAATTTTCAATTCATACATACTTTGACAGCTGGAACAGGATTTTGATTGAAGGAGTTTTTGGTGGCCTTATGGTAAGCCATACTGGAGCTGTAACATTGTGATGCACACCTTTATTTCCATAAAACTTGAATGTCCAGATCATTCAACATGATTTACATGAACTTGTATCTTTCATGTTTAATCTATATTCTATGTTATTATGAAGCATGGGATGATGGGAAGATTGATCATTTTAGAAAGTTGATGAATGTGGAACATCCCTTAACAATCTGTTCGGGTTTGGCATTTTAACCAAATTGTTAGAAACCTCCTAGTTAGGAATAGTGTGACATTATCATGGATCTTCCTAGCTGTTAAAAGGTGGCCTGGTTTGGTGGGAGAATACAGATTTTTGATGGAAGGAGTATAAAACATTGGGAGCTTCATACCCTAACTAATGATTCACATCTCAATTGTTACTGTTGACTGTTGGTAAATGTTCTCAAGTTATACAACCACATTTTCTTAACTATATGTTTGGTGTTGCTAGTATTCTAATATCAATATAGGATTCTATTGCCTCAATGTATAGTTCATCACTAGATTATTTCCTCAAATTTCTTCATGATAATGAGCTTTATCCTGTTTTGGATGGTGGCCTAACATTATTTCCTTGCTTTTTTTGCAGTCTTTTGTGCTGTTTTGGACGTATCCTTGATGCTGTAAATATTATTGCTATTTTCAATTTTCCATATATACACAAACCATCTAGTATTTCTTATTCAGTATAGGTGTCAGGCAAGGTCTGATTCGATTACTAGTATAATGGCTCACCACCATAGAACCATACTAAAGCCACATAACTGAGAGTATGTAAATCATTATTATGTGAGGCCATAGCATGAATTTGAGGTAGACCATTGTGGTTATACATTTGAAGATGCCATATAAATTATATAATGCATGCCAATTTTTATGTTTGAGTTTGTCCTTAACAATGAACAGATTTGCGTATGATATTGTGCACATCTTCTGATGCACGGCATAAAGAACTCAACTCCGAAGACTTGAAGGGAGCTGTGGGGTTTCTCCTTGAACTGAATTAACGTGTAACCGCACCAACCCTGGAGGACTACATTCGTTGGACTGCTGTCCTGTTTTGTTCCT TTTTTTTCCACTCCACATGTATCAGTTATAGCTCTGTACTTTAGAAAGAT GCAAGCTTATTA ]
[+] EMBL BQ907553 [ ccGTGGGGTTTCTCCTTGAACTGAATTAACGTGTAACCGCACCAACCCTGGAGGACTACATTCGTTGGACTGCTGTCCTGTTTTGTTCCTGTGTTGTTTTCCGCTCCACATGTATCAGTTATAGCTCTGTACTTTAGAAAGATGGCAAGCTTATTAAGTTTAATNTACAAATTGATGTAGAAGTGAATCCAATTGCTGGCAAGTATGGTGCTTGATCTTTTGAACATCAGAACTTGCTAGGTAGGGGACAACTGGTCATTGATACATCTATTGCTGCCCAGCGTGCTGATACTAAAA]
consensusID : consensus_15029#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 14 consensus length = 775 fasta sequence
[TGTCGCACATCCGTCTCCCACCTGACTCGTTCTAATCGGCGAAGAGAAACCCACACAAGAGGAAGATGGCGGCGCCGGCGACC-GGCGG-CGGGATCTCCGCCGACGT-C-CCCATCCTCCACTCGGAGAACCTCACCAGCAACGTCAAATCCATCTACTACAGTCGGACATTCTTGTCAATTATCAGTGGAGTTGTTGCCGGAATCTGGGGATTCACAGGCTTGATGGGATTCGTGTTCTACCTTCTTGTAATGATGGTGGCATCCCTTGGGCTTTTGCTGAAGGCCAAATTTTCAATTCATACATACTTTGACAGCTGGAACAGGATTTTGATTGAAGGAGTTTTT-GGTGGCCTTATGTCTTTTGTGCTGTTTTGGACATTTGCGTATGATATTGTGCACATCTTCTGATGCACGGCATAAA-GAACTCAAC-TCCGAA-GAC-TT-GAAGGGAGCTG-T-GGGGTTTCTCCTTGAACTGAATTAACGTGTAACCGCACCAACCCTGGAGGACTACATTCGTTGGACTGCTGTCCTGTTTTGTTCCTTTTTTTTTCCACTCCACATGTATCAGTTATAGCTCTGTACTTTAGAAAGATGCAAGCTTATTAAGTTTAATTTACAAATTGATGTAGAAGTGAATCCAATTGCTGGCAAGTATGGTGCTTGATCTTTTGAACATCAGAACTTGCTAGGTAGGGGACAACTGGTCATTGATACATCTATTGCTGCCCAGCGTGCTGATACTATACTCCACTAGTAGTATGTTATATTGTTAAAAAAAA]
[+] EMBL CA305604 [TGTCGCACATCCGTCTCCCACCTGACTCGTTCTAATCGGCGAAGAGAAACCCACACAAGAGGGAGATGGCGGCGCCGGCGACC GGCGG CGGGATCTCCGCCGACGT C CCCATCCTCCACTCGGAGAACCTCACCAGCAACGTCAAATCCATCTACTACAGTCGGACATTCTTGTCAATTATCAGTGGAGTTGTTGCCGGAATCTGGGGATTCACAGGCTTGATGGGATTCGTGTTCTACCTTCTTGTAATGATGGTGGCATCCCTTGGGCTTTTGCTGAAGGCCAAATTTTCAATTCATACATACTTTGACAGCTGGAACAGGATTTTGATTGAAGGAGTTTTT GGTGGCCTTATGTCTTTTGTGCTGTTTTGGACATTTGCGTATGATATTGCGCACATCTTCTGATGCACGGTATAAA GAACTCAAC TNCGAA GAC TT GAAGGGAGCTG T GGGGTTTCTCCTTGAACTGAATTAACGTG ]
[+] EMBL CF280631 [ CCGTCTCCCACCTGACTCGTTCTAATCGGCGAAGAGAAACCCACACAAGAGGAAGATGGCGGCGCCGGCGACC GGCGG CGGGATCTCCGCCGACGT C CCCATCCTCCACTCGGAGAACCTCACCAGCAACGTCAAATCCATCTACTACAGTCGGACATTCTTGTCAATTATCAGTGGAGTTGTTGCCGGAATCTGGGGATTCACAGGCTTGATGGGATTCGTGTTCTACCTTCTTGTAATGATGGTGGCATCCCTTGGGCTTTTGCTGAAGGCCAAATTTTCAATTCATACATACTTTGACAGCTGGAACAGGATTTTGATTGAAGGAGTTTTT GGTGGCCTTATGTCTTTTGTGCTGTTTTGGACATTTGCGTATGATATTGTGCACATCTTCTGA ]
[+] EMBL C74126 [ CTGACTCGTTCTAATCGGCGAAGAGAAACCCACACAAGAGGAAGATGGCGGCGCCGGCGACC GG GG CGGGATCTCCGCCGACGT C CCCATCCTCCACTCGGAGAACCTCACCAGCAACGTCAAATCCATCTACTACAGTCGGACATTCTTGTCAATTATCAGTGGAGTTGTTGCCGGAATCTGGGGATTCACAGGCTTGATGGGATTCGTGTTCTACCTTCTTGTAATGATGGTGGNAT CCTTGGGCTTTTGCTGAAGG CAAATTTTCNATTCATACATACTTTGACAGCTGGAACAGGATTTTGATTGAGGGAG TTTT GGTGG CTTATGTC TTTGNGCTGTTTT GA AATTGCG ATGA AATGTGCA ATCTTCT ATGCACG ]
[+] EMBL OS1321738 [ TGACTCGTTCTAATCGGCGAAGAGAAACCCACACAAGAGGAAGATGGCGGCGCCGGCGACC GG GG CGGGATCTCCG CGACGT C CCCATCCTCCACTCGGAGAACCTCACCAGCAACGTCAAATCCATCTACTACAGTCGGACATTCTTGTCAATTATCAGTGGAGTTGTTGCCGGAATCTGGGGATTCACAGGCTTGATGGGATTCGTGTTCTACCTTCTTGTAATGATGGTGGCATCCCTTGGGCTTTTGCTGAAGGCCAAATTTTCAATTCATACATACTTTGACAGCTGGAACAGGATTTTAATTGAAGGAGTTTTT GGTGGCCTTATGTCTTTTGTGCTGTTTTGGACATTTTCGTATGATATTGTGCACATCTTCT ]
[+] EMBL BE040529 [ GACTCGTTCTAATCGGCGAAGAGAAACCCACACAAGAGGGAGATGGCGGCGCCGGCGACC GGCGG CGGGATCTCCGCCGACGT C CCCATCCTCCACTCGGAGAACCTCACCAGCAACGTCAAATCCATCTACTACAGTCGGACATTCTTGTCAATTATCAGTGGAGTTGTTGCCGGAATCTGGGGATTCACAGGCTTGATGGGATTCGTGTTCTACCTTCTTGTAATGATGGTGGCATCCCTTGGGCTTTTGCTGAAGGCCAAATTTTCAATTCATACATACTTTGACAGCTGGAACAGGATTTTGATTGAAGGAGTTTTT GGTGGCCTTATGTCTTTTGTGCTGTTTTGGACATTTGCGTATGATATTGTGCACATCTTCTGATGCACGGCATAAA GAACTCAAC TCCGAA GAC TT GAAGGGAGCTG T GGGGTTTCTCCTTGAACTGAATTAACGTGTAACCGCACCAACCCTGGAGGACTACATTCGTTGGACTGCTGTCCTGTTTTGTTCC TTTTTTTTCCGCTCCACATGTATCAGTTATAGCTCTGTACTTTAGAAAGATGCAAGCTTATTAAGTTTAATTTACAAATTGATGTAGAAGTGAATCCCAATGCTGGCAAGTATGGTGCTGGATCTTTNGAACATCAGAACTTGCTAGGTAGGGGACAACTGGTCATTGATACATCTAaaaaaaaa ]
[+] EMBL C27017 [ CACACAAGAGGAAGATGGCGGCG CGGCGACC GGC G NGNANTCTCCGC ANTN CNCCCATCCTCCACTCGGAGAACCTCACCAGCAACGTCAAATCCATCTACTACAGTCGGACATTCTTGTCAATTATCAGTGGAGTTGTTGCCGGAATCTGGGGATTCACAGGCTTGATGGGATTCGTGTTCTACCTTCTTGTAATGATGGTGGCATCCCTTGGGCTTTTGCTGAAGGCCAAATTTTCAATTCATACATACTTTGACAGCTGGAACAGGATTTTGATTGAAGGAGTTTTTGGGTGGCCTTATGTCTTTTGTGCTGTTTTGGACATTTGCGTATGATATTGTGCACATCTTCTGATGCACGGCATAAA GAACTCAAC TCCGAA GACTTT GAAGGGAGCTG TNGGGGTTTCTCCTTGAACTGAATTAACGTGTAACC ]
[-] EMBL CB680414 [ ACACAAGAGGAAGATGGCGGCGCCGGCGACC GGCGG CGGGATCTCCGCCGACGT C CCCATCCTCCACTCGGAGAACCTCACCAGCAACGTCAAATCCATCTACTACAGTCGGACATTCTTGTCAATTATCAGTGGAGTTGTTGCCGGAATCTGGGGATTCACAGGCTTGATGGGATTCGTGTTCTACCTTCTTGTAATGATGGTGGCATCCCTTGGGCTTTTGCTGAAGGCCAAATTTTCAATTCATACATACTTTGACAGCTGGAACAGGATTTTGATTGAAGGAGTTTTT GGTGGCCTTATGTCTTTTGTGCTGTTTTGGACATTTGCGTATGATATTGTGCACATCTTTTGATGCACGGCATAAA GAACTCAAC TCCGAA GAC TT GAAGGGAGCTG T GGGGTTTCTCCTTGAACTGAATTAACGTGTAACCGCACCAACCCTGGAGGACTACATTCGTTGGACTGCTGTCCTGTTTTGTTCCTTTTTTTTTCCACTCCACATGTATCAGTTATAGCTCTGTACTTTAGAAAGATGCAAGCTTATTAAGTTTAATTGGCAAATTGATGTAGAAGTGAATCCAATTGCTGGCAAGTATGGTGCTTGATCTTTTGAACATCAGACCTTTATGGGTAGGGGACAACTGGT ]
[+] EMBL AU031286 [ CACAAGAGGAAGATGGCGGCGCCGGCGACC GGCGGACGGGATCTCCGCCGACGT C CCCATCCTCCACTCGGAGAACCTCACCAGCAACGTCAAATCCATCTACTACAGTCGGACATTCTTGTCAATTATCAGTGGAGTTGTTGCCGGAATCTGGGGATTCACAGGCTTGATGGGATTCGTGTTCTACCTTCTTGTAATGATGGTGGCATCCCTTGGGCTTTTGCTGAAGGCCAAATTTTCAATTCATACATACTTTGACAGCTGGAACAGGATTTTGATTGAAGGAGTTTTT GGTGGCCTTATGTCTTTTGTGCTGTTTTGGACATTTGCGTATGATATTGTGCACATCTTCTGATGCACGGCATAAA GAACTCAAC TCCGAA GAC TTGGAAGGGAGCTG T GGGGTTTCTCCTTGAACTGAATTAACGTGTAANCGCACCAACCCTGGAGGACTACATTCGTTGGACT ]
[+] EMBL C27889 [ GAGGAAGATGGCGGCG CGGCGACCGGGCGG NGNANTCTCCGC ACGTNC CCCATCCTCCACTCGGAGAACCTCACCAGCAACGTCAAATCCATCTACTACAGTCGGACATTCTTGTCAATTATCAGTGGAGTTGTTGCCGGAATCTGGGGATTCACAGGCTTGATGGGATTCGTGTTCTACCTTCTTGTAATGATGGTGGCATCCCTTGGGCTTTTGCTGAAGGCCAAATTTTCAATTCATACATACTTTGACAGCTGGAACAGGATTTTGATTGAAGGAGTTTTT GGTGGCCTTATGTCTTTTGTGCTGTTTTGGACATTTGCGTATGATATTGTGCACATCTTCTGATGCACGGCATAAAGGAACTCAACTTCCGAAGGAC TT NAGGGGAGCTGTT GGGGTTTCTCCTTGAACTGAATTAACGTGTAACCGNACCAACC ]
[+] EMBL AU057877 [ CGGCNACC GGCGG CGGNATCTCCGCCGACGT C CCCATCCTCCACTCGGAG ACCTCACCAGCAACGTCAAATCCATCTACTACAGTCGGACATTCTTGTCAATTATCAGTGGAGTTGTTGCCGGAATCTGGGGATTCACAGGCTTGATGGGATTCGTGTTCTACCTTCTTGTAATGATGGTGGCATCCCTTGGGCTTTTGCTGAAGGCCAAATTTTCAATTCATACATACTTTGACAGCTGGAACAGGATTTTGATTGAAGGAGTTTTT GGTGGCCTTATGTCTTTTGTGCTGTTTTGGACATTTGCGTATGATATTGTGCACATCTTCTGATGCACGGCATAAA GAACTCAAC TCCGAA GAC TT GAAGGGAGCTG T GGGGTTTCTCCTTGAACTGAATTAACGTGTAACCGCACCAACCCTGGAGGACTACATTCGTTGGACTGCTGTCCTGTTTTGTTCCTTTTTTTTTCCACTCCACATGTATCAGTTATAGCTCTGTACTTTAGAAAGATGCAAGCTTATTAAGTTTAATTTACAAATTGATGTAGAAGTGAATCCAATTGCTGGCAAGTATGGTGCTTGATCTTTTGAACATCAGAACTTGCTAGGTAGGGGACAACTGGTCATTGATACATCTATTGCTGCCCAGCGTGCTGATACTATACTCCACTAGTAGTATGTTATATTGTTAAAAAAAA]
[+] EMBL AU057876 [ CCATCCTCCACTCGGAGAACCTCACCAGCAACGTCAAATCCATCTACTACAGTCGGACATTCTTGTCAATTATCAGTGGAGTTGTTGCCGGAATCTGGGGATTCACAGGCTTGATGGGATTCGTGTTCTACCTTCTTGTAATGATGGTGGCATCCCTTGGGCTTTTGCTGAAGGCCAAATTTTCAATTCATACATACTTTGACAGCTGGAACAGGATTTTGATTGAAGGAGTTTTT GGTGGCCTTATGTCTTTTGTGCTGTTTTGGACATTTGCGTATGATATTGTGCACATCTTCTGATGCACGGCATAAA GAACTCAAC TCCGAA GAC TT GAAGGGAGCTG T GGGGTTTCTCCTTGAACTGAATTAACGTGTAACCGCACCAACCCTGGAGGACTACATTCGTTGGACTGCTGTCCTGTTTTGTTCCTTTTTTTTTCCACTCCACATGTATCAGTTATAGCTCTGTACTTTAGAAAGATGCAAGCTTATTAAGTTTAATTTACAAATTGATGTAGAAGTGAATCCAATTGCTGGCAAGTATGGTGCTTGATCTTTTGAACATCAGAACTTGCTAGGTAGGGGACAACTGGTCATTGATACATCTATTGCTGCCCAGCGTGCTGATACTA ]
[-] EMBL CB964630 [ TCCACTCGGTGTACCTCACCGTCTACGTCAAATCCATCTACTACAGTCGGACATTCTTGTCTATTATCAGTGGAGTTGTTACCGGAATCTGGGGATTCACAGGCTTGATGGGATTCGTGTTCTACCTTCTTGTAATGATGGTGGCATCCCTTGGGCTTTTGCTGAAGGCCAAATTTTCAATTCATACATACTTTGACAGCTGGAACAGGATTTTGATTGAAGGAGTTTTT GGTGGCCTTATGTTTTTTGTGCTGTTTTGGACATTTGCGTATGATATTGTGCACATCTTCTGATGCACGGCATAAA GAACTCAAC TCCGAA GAC TT GAAGGGAGCTG T GGGGTTTCTCCTTGAACTGAATTAACGTGTAACCGCACCAACCCTGGAGGACTACATTCGTTGGACTGCTGTCCTGTTTTGTTCC TTTTTTTTCCACTCCACATGTATCAGTTATAGCTCTGTTTTTTAGAAAGATGCAAGCTTATTAAGTTTAATTTAC ]
[-] EMBL CF280630 [ AGTTGTTGCCGGAATCTGGGGATTCACAGGCTTGATGGGATTCGTGTTCTACCTTCTTGTAATGATGGTGGCATCCCTTGGGCTTTTGCTGAAGGCCAAATTTTCAATTCATACATACTTTGACAGCTGGAACAGGATTTTGATTGAAGGAGTTTTT GGTGGCCTTATGTCTTTTGTGCTGTTTTGGACATTTGCGTATGATATTGTGCACATCTTCTGATGCACGGCATAAA GAACTCAAC TCCGAA GAC TT GAAGGGAGCTG T GGGGTTTCTCCTTGAACTGAATTAACGTGTAACCGCACCAACCCTGGAGGACTACATTCGTTGGACTGCTGTCCTGTTTTGTTCC TTTTTTTTCCACTCCACATGTATCAGTTATAGCTCTGTACTTTAGAAAGATGCAAGCTTATTAAGTTTAATTTACAAATTGATGCAGAAGTGAATCCAATTGCTGGCAAGTATGGTGCTTGATCTTTTGAACATCAGAACTTGCTAGGTAGGGGACAACTGGTCATTGATACATCTATTGCTGCCCAGCGTGCTGATACTATACTCCACTAGTAGTATGTTATATTGTTAAAAA ]
[+] EMBL AU095315 [ GGGGATTCACAGGCTTGATGGGATTCGTGTTCTACCTTCTTGTAATGATGGTGGCATCCCTTGGGCTTTTGCTGAAGGCCAAATTTTCAATTCATACATACTTTGACAGCTGGAACAGGATTTTGATTGAAGGAGTTTTT GGTGNCCTTATGTCTTTTGTGCTGTTTTGGACATTTGCGTATGATATTGTGCACATCTTCTGATGCACGGCATAAA GAACTCAAC TCCGAA GAC TT GAAGGGAGCTG T GGGGTTTCTCCTTGAACTGAATTAACGTGTAACCGCACCAACCCTGGAGGACTACATTCGTTGGACTGCTGTCCTGTTTTGTTCCTTTTTTTTTCCACTCCACATGTATCAGTTATAGCTCTGTACTTTAGAAAGATGCAAGCTTATTAAGTTTAATTTACAAATTGATGTAGAAGTGAATCCAATTGCTGGCAAGTATGGTGCTTGATCTTTTGAACATCAGAACTTGCTAGGTAGGGGACAACTGGTCATTGATACATCTATTGCTGCCCAGCGTGCTGATAaaaa ]
consensusID : consensus_15029#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 713 fasta sequence
[GAGGCCGAGCCAAGGGGGGACTCGTTCTAATCGGCGAAAGAAACCCCCACAAGAGGGAGATGGCGGCCCCGCCGACCGGCGGCGGGATCTCNGCCGACGTCCCCCATCCTCCACTCGGAGAACCTCACCAGCAACGTCAAATCCATCTACTACAGTCGGACATTCTTGTCAATTATCAGTGGAGTTGTTGCCGGAATCTGGGGATTCACAGGCTTGATGGGATTCGTGTTCTACCTTCTTGTAATGATGGTGGCATCCCTTGGGCTTTTGCTGAAGGCCAAATTTTCAATTCATACATACTTTGACAGCTGGAACAGGATTTTGATTGAAGGAGTTTTTGGTGGCCTTATGTCTTTTGTGCTGTTTTGGACATTTGCGTATGATATTGTGCACATCTTCTGATGCACGGCATAAAGAACTCAACTCCGAAGACTTGAAGGGAGCTGTGGGGTTTCTCCTTGAACTGAATTAACGTGTAACCGCACCAACCCTGGAGGACTACATTCGTTGGACTGCTGTCCTGTTTTATTCCTTTTTTTTTCCGCTCCACATGTATCAGTTATAGCTCTGTACTTTAGAAAGATGCAAGCTTATTAAGTTTAATTTACAAATTGATGTAGAAGTGAATCCAATTGCTGGCAAGTATGGTGCTTGATCTTTTGANCATCAAAAAAAAAAAAAAACCAAAAAAAAAAAAAAAAAAANCAAAAAAA]
[-] EMBL CA759747 [GAGGCCGAGCCAAGGGGGGACTCGTTCTAATCGGCGAAAGAAACCCCCACAAGAGGGAGATGGCGGCCCCGCCGACCGGCGGCGGGATCTCNGCCGACGTCCCCCATCCTCCACTCGGAGAACCTCACCAGCAACGTCAAATCCATCTACTACAGTCGGACATTCTTGTCAATTATCAGTGGAGTTGTTGCCGGAATCTGGGGATTCACAGGCTTGATGGGATTCGTGTTCTACCTTCTTGTAATGATGGTGGCATCCCTTGGGCTTTTGCTGAAGGCCAAATTTTCAATTCATACATACTTTGACAGCTGGAACAGGATTTTGATTGAAGGAGTTTTTGGTGGCCTTATGTCTTTTGTGCTGTTTTGGACATTTGCGTATGATATTGTGCACATCTTCTGATGCACGGCATAAAGAACTCAACTCCGAAGACTTGAAGGGAGCTGTGGGGTTTCTCCTTGAACTGAATTAACGTGTAACCGCACCAACCCTGGAGGACTACATTCGTTGGACTGCTGTCCTGTTTTATTCCTTTTTTTTTCCGCTCCACATGTATCAGTTATAGCTCTGTACTTTAGAAAGATGCAAGCTTATTAAGTTTAATTTACAAATTGATGTAGAAGTGAATCCAATTGCTGGCAAGTATGGTGCTTGATCTTTTGANCATCAAAAAAAAAAA ]
[+] EMBL AU183744 [ TCAATTCATACATACTTTGACAGCTGGAACAGGATTTTGATTGAAGGAGTTTTTGGTGGCCTTATGTCTTTTGTGCTGTTTTGGACATTTGCGTATGATATTGTGCACATCTTCTGATGCACGGCATAAAGAACTCAACTCCGAAGACTTGAAGGGAGCTGTGGGGTTTCTCCTTGAACTGAATTAACGTGTAACCGCACCAACCCTGGAGGACTACATTCGTTGGACTGCTGTCCTGTTTTGTTCC TTTTTTTTCCACTCCACATGTATCAGTTATAGCTCTGTACTTTAGAAAGATGCAAGCTTATTAAGTTTAATTTACAAATTGATGTAGAAGTGAATCCAATTGCTGGCAAGTATGGTGCTTGATCTTTTGAACATCAAAAAAAAAAAAAAACCAAAAAAAAAAAAAAAAAAANCAAAAAAA]
consensusID : consensus_15029#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 322 fasta sequence
[CCTGGACGGCAGGGGTAGAAAGTTCTAATCGGCGAAGAGAAACCCACACAAGTAGGAAGTATGGCGGCGCCGGCGACCGGCGGCGGGATCTCCGCCGACGTCCCCATCCTCCACTCGGAGAACCTCACCAGCAACGTCAAATCCATCTACTACAGTCGGACATTCTTGTCAATTATCAGTGGAGTTGTTGCCGGAATCTGGGGATTCACAGGCTTGATGGGATTCGTGTTCTACCTTCTTGTAATGATGGTGGCATCCCTTGGGCTTTTGCTGAAGGCCAAATTTTCAATTCATACATACTTTGACAGCTGGAACAAGATTT]
[+] EMBL CF308634 [CCTGGACGGCAGGGGTAGAAAGTTCTAATCGGCGAAGAGAAACCCACACAAGTAGGAAGTATGGCGGCGCCGGCGACCGGCGGCGGGATCTCCGCCGACGTCCCCATCCTCCACTCGGAGAACCTCACCAGCAACGTCAAATCCATCTACTACAGTCGGACATTCTTGTCAATTATCAGTGGAGTTGTTGCCGGAATCTGGGGATTCACAGGCTTGATGGGATTCGTGTTCTACCTTCTTGTAATGATGGTGGCATCCCTTGGGCTTTTGCTGAAGGCCAAATTTTCAATTCATACATACTTTGACAGCTGGAACAAGATTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15029#1 ------------------------------------------------------------
consensus_15029#2 ------------------------------------------------------------
consensus_15029#3 ------------------------------------------------------------
consensus_15029#0 CTCCCACCTGACTCGTTCTAATCGGCGAAGAGAAACCCACACAAGAGGAAGATGGCGGCG 60
consensus_15029#1 ------------------------------------------------------------
consensus_15029#2 ------------------------------------------------------------
consensus_15029#3 ------------------------------------------------------------
consensus_15029#0 CCGGCGACCGGCGGCGGGATCTCCGCCGACGTCCCCATCCTCCACTCGGAGAACCTCACC 120
consensus_15029#1 ------------------------------------------------------------
consensus_15029#2 ------------------------------------------------------------
consensus_15029#3 ------------------------------------------------------------
consensus_15029#0 AGCAACGTCAAATCCATCTACTACAGGTTCCGCTCGTTCTCTTCCCCCCCCCCCCCCCCC 180
consensus_15029#1 ------------------------------------------------------------
consensus_15029#2 ------------------------------------------------------------
consensus_15029#3 ------------------------------------------------------------
consensus_15029#0 CCCCAACCAAAGTTTAGAATTCGATCTGATCTGATAAGTAGGGTCATGCTTATGTCTGTT 240
consensus_15029#1 ------------------------------------------------------------
consensus_15029#2 ------------------------------------------------------------
consensus_15029#3 ------------------------------------------------------------
consensus_15029#0 CGATTGGATCTGGGATTTATGCGACGACATGGTTTGATCTGCTCAGATTAGCCCTAATTC 300
consensus_15029#1 ------------------------------------------------------------
consensus_15029#2 ------------------------------------------------------------
consensus_15029#3 ------------------------------------------------------------
consensus_15029#0 TTTCGATTCAATCCGGAACCGTGCGACCTGGTAGTTTCACTGTAGGCATGCTTCCGCTCT 360
consensus_15029#1 ------------------------------------------------------------
consensus_15029#2 ------------------------------------------------------------
consensus_15029#3 ------------------------------------------------------------
consensus_15029#0 TCTTGCGGCAATTTCGAAATCTCGGGGTGCAGTTTAGGATCAAAATCTAAGTACTATGAA 420
consensus_15029#1 ------------------------------------------------------------
consensus_15029#2 ------------------------------------------------------------
consensus_15029#3 ------------------------------------------------------------
consensus_15029#0 TAATAAGAAAAGGATCAAGTAATTCTGTGGGCCAGTTCATACTGCCAGAAACTGTGGGTC 480
consensus_15029#1 ------------------------------------------------------------
consensus_15029#2 ------------------------------------------------------------
consensus_15029#3 ------------------------------------------------------------
consensus_15029#0 AAATTGCACACTTACACTAGGATCTACTAAAATTAGAGTAATCAGGCTTCATGAATCAAC 540
consensus_15029#1 ------------------------------------------------------------
consensus_15029#2 ------------------------------------------------------------
consensus_15029#3 ------------------------------------------------------------
consensus_15029#0 TGAAAGTTTTCAATGTTTACATGCTTTTCTACTTCATGCTCAGATAGATGCTAGATACCT 600
consensus_15029#1 ------------------------------------------------------------
consensus_15029#2 ------------------------------------------------------------
consensus_15029#3 ------------------------------------------------------------
consensus_15029#0 CCCATTAACTATTAACTCTTTTCGTAACCCTTTCAGCAATTCTAGTCATTGATGATTATT 660
consensus_15029#1 ------------------------------------------------------------
consensus_15029#2 ------------------------------------------------------------
consensus_15029#3 ------------------------------------------------------------
consensus_15029#0 TTTGACTGCTTCACTTTTATACCAAGATGGCAAGGTGATATGTCTTAACCGTGAGGATTG 720
consensus_15029#1 ------------------------------------------------------------
consensus_15029#2 ------------------------------------------------------------
consensus_15029#3 ------------------------------------------------------------
consensus_15029#0 ATTTTGCGTTGCAGTCGGACATTCTTGTCAATTATCAGTGGAGTTGTTGCCGGAATCTGG 780
consensus_15029#1 ------------------------------------------------------------
consensus_15029#2 ------------------------------------------------------------
consensus_15029#3 ------------------------------------------------------------
consensus_15029#0 GGATTCACAGGCTTGATGGGATTCGTGTTCTACCTTCTTGTAATGATGGTGGCATCCCTT 840
consensus_15029#1 ------------------------------------------------------------
consensus_15029#2 ------------------------------------------------------------
consensus_15029#3 ------------------------------------------------------------
consensus_15029#0 GGGCTTTTGCTGAAGGCCAAATTTTCAATTCATACATACTTTGACAGCTGGAACAGGATT 900
consensus_15029#1 ------------------------------------------------------------
consensus_15029#2 ------------------------------------------------------------
consensus_15029#3 ------------------------------------------------------------
consensus_15029#0 TTGATTGAAGGAGTTTTTGGTGGCCTTATGGTAAGCCATACTGGAGCTGTAACATTGTGA 960
consensus_15029#1 ------------------------------------------------------------
consensus_15029#2 ------------------------------------------------------------
consensus_15029#3 ------------------------------------------------------------
consensus_15029#0 TGCACACCTTTATTTCCATAAAACTTGAATGTCCAGATCATTCAACATGATTTACATGAA 1020
consensus_15029#1 ------------------------------------------------------------
consensus_15029#2 ------------------------------------------------------------
consensus_15029#3 ------------------------------------------------------------
consensus_15029#0 CTTGTATCTTTCATGTTTAATCTATATTCTATGTTATTATGAAGCATGGGATGATGGGAA 1080
consensus_15029#1 ------------------------------------------------------------
consensus_15029#2 ------------------------------------------------------------
consensus_15029#3 ------------------------------------------------------------
consensus_15029#0 GATTGATCATTTTAGAAAGTTGATGAATGTGGAACATCCCTTAACAATCTGTTCGGGTTT 1140
consensus_15029#1 ------------------------------------------------------------
consensus_15029#2 ------------------------------------------------------------
consensus_15029#3 ------------------------------------------------------------
consensus_15029#0 GGCATTTTAACCAAATTGTTAGAAACCTCCTAGTTAGGAATAGTGTGACATTATCATGGA 1200
consensus_15029#1 ------------------------------------------------------------
consensus_15029#2 ------------------------------------------------------------
consensus_15029#3 ------------------------------------------------------------
consensus_15029#0 TCTTCCTAGCTGTTAAAAGGTGGCCTGGTTTGGTGGGAGAATACAGATTTTTGATGGAAG 1260
consensus_15029#1 ------------------------------------------------------------
consensus_15029#2 ------------------------------------------------------------
consensus_15029#3 ------------------------------------------------------------
consensus_15029#0 GAGTATAAAACATTGGGAGCTTCATACCCTAACTAATGATTCACATCTCAATTGTTACTG 1320
consensus_15029#1 ------------------------------------------------------------
consensus_15029#2 ------------------------------------------------------------
consensus_15029#3 ------------------------------------------------------------
consensus_15029#0 TTGACTGTTGGTAAATGTTCTCAAGTTATACAACCACATTTTCTTAACTATATGTTTGGT 1380
consensus_15029#1 --------------------------------------------------TGTCGCACAT 10
consensus_15029#2 -------------------------------------------------------GAGGC 5
consensus_15029#3 ---------------------------------------------------------CCT 3
consensus_15029#0 GTTGCTAGTATTCTAATATCAATATAGGATTCTATTGCCTCAATGTATAGTTCATCACTA 1440
consensus_15029#1 CCGTCTCCCACCTGACTCGTTCTAATCGGCGAAGAGAAACCCACACAAG-AGGAAG-ATG 68
consensus_15029#2 CGAGCCAAGGGGGGACTCGTTCTAATCGGCGAA-AGAAACCCCCACAAG-AGGGAG-ATG 62
consensus_15029#3 GGACGGCAGGGGTAGAAAGTTCTAATCGGCGAAGAGAAACCCACACAAGTAGGAAGTATG 63
consensus_15029#0 GATTATTTCCTCAAATTTCTTCATGATAATGAGCTTTATCCTGTTTTGGATGGTGGCCTA 1500
*** ** * ** * ** * *
consensus_15029#1 GCGGCGCCGGCG-ACCGGCGGCGGGATCTCCGCCGACGTCC----CC-ATCCTCCACTCG 122
consensus_15029#2 GCGGCCCCGCCG-ACCGGCGGCGGGATCTCNGCCGACGTCC----CCCATCCTCCACTCG 117
consensus_15029#3 GCGGCGCCGGCG-ACCGGCGGCGGGATCTCCGCCGACGTCC----CC-ATCCTCCACTCG 117
consensus_15029#0 ACATTATTTCCTTGCTTTTTTTGCAGTCTTTTGTGCTGTTTTGGACGTATCCTTGATGCT 1560
* * * * *** * ** * ***** * *
consensus_15029#1 GAGAACCTCACCAGCAACGTCAAATCCATCTACTACAGTCGGACATTCT--TGTCAATTA 180
consensus_15029#2 GAGAACCTCACCAGCAACGTCAAATCCATCTACTACAGTCGGACATTCT--TGTCAATTA 175
consensus_15029#3 GAGAACCTCACCAGCAACGTCAAATCCATCTACTACAGTCGGACATTCT--TGTCAATTA 175
consensus_15029#0 GTAAATATTATTGCTATTTTCAATTTTCCATA-TATACACAAACCATCTAGTATTTCTTA 1619
* ** * * * **** * ** ** * * ** *** * * ***
consensus_15029#1 T-CAGTGGAGTTGTT-GCCGGAATCTGGGG-ATTCACAGGCTTGATGGG--ATTCGTGTT 235
consensus_15029#2 T-CAGTGGAGTTGTT-GCCGGAATCTGGGG-ATTCACAGGCTTGATGGG--ATTCGTGTT 230
consensus_15029#3 T-CAGTGGAGTTGTT-GCCGGAATCTGGGG-ATTCACAGGCTTGATGGG--ATTCGTGTT 230
consensus_15029#0 TTCAGTATAGGTGTCAGGCAAGGTCTGATTCGATTACTAGTATAATGGCTCACCACCATA 1679
* **** ** *** * * **** * ** * * **** * *
consensus_15029#1 CTACCTTCTTGTAATGA------TGGTGGCATCCCTTGGGCTTTTGCTGAAGGCCAAATT 289
consensus_15029#2 CTACCTTCTTGTAATGA------TGGTGGCATCCCTTGGGCTTTTGCTGAAGGCCAAATT 284
consensus_15029#3 CTACCTTCTTGTAATGA------TGGTGGCATCCCTTGGGCTTTTGCTGAAGGCCAAATT 284
consensus_15029#0 GAACCATACTAAAGCCACATAACTGAGAGTATGTAAATCATTATTATGTGAGGCCATAGC 1739
*** * * * * ** * ** * ** ****** *
consensus_15029#1 TTCAATTCATA---------CATACTTTGACAGCTGGA-ACAGGATTTTGATTGAAGGAG 339
consensus_15029#2 TTCAATTCATA---------CATACTTTGACAGCTGGA-ACAGGATTTTGATTGAAGGAG 334
consensus_15029#3 TTCAATTCATA---------CATACTTTGACAGCTGGA-ACAAGATTT------------ 322
consensus_15029#0 ATGAATTTGAGGTAGACCATTGTGGTTATACATTTGAAGATGCCATATAAATTATATAAT 1799
* **** * ** *** ** * * ** *
consensus_15029#1 TTTTTGGTGGCCTTATGTCT---TTTGTGCT--GTTTTGGACA--TTTGCGTATGATATT 392
consensus_15029#2 TTTTTGGTGGCCTTATGTCT---TTTGTGCT--GTTTTGGACA--TTTGCGTATGATATT 387
consensus_15029#3 ------------------------------------------------------------
consensus_15029#0 GCATGCCAATTTTTATGTTTGAGTTTGTCCTTAACAATGAACAGATTTGCGTATGATATT 1859
consensus_15029#1 GTGCACATCTTCTGATGCACGGCATAAAGAACTCAACTCCGAAGACTTGAAGGGAGCTGT 452
consensus_15029#2 GTGCACATCTTCTGATGCACGGCATAAAGAACTCAACTCCGAAGACTTGAAGGGAGCTGT 447
consensus_15029#3 ------------------------------------------------------------
consensus_15029#0 GTGCACATCTTCTGATGCACGGCATAAAGAACTCAACTCCGAAGACTTGAAGGGAGCTGT 1919
consensus_15029#1 GGGGTTTCTCCTTGAACTGAATTAACGTGTAACCGCACCAACCCTGGAGGACTACATTCG 512
consensus_15029#2 GGGGTTTCTCCTTGAACTGAATTAACGTGTAACCGCACCAACCCTGGAGGACTACATTCG 507
consensus_15029#3 ------------------------------------------------------------
consensus_15029#0 GGGGTTTCTCCTTGAACTGAATTAACGTGTAACCGCACCAACCCTGGAGGACTACATTCG 1979
consensus_15029#1 TTGGACTGCTGTCCTGTTTTGTTCCTTTTTTTTTCCACTCCACATGTATCAGTTATAGCT 572
consensus_15029#2 TTGGACTGCTGTCCTGTTTTATTCCTTTTTTTTTCCGCTCCACATGTATCAGTTATAGCT 567
consensus_15029#3 ------------------------------------------------------------
consensus_15029#0 TTGGACTGCTGTCCTGTTTTGTTCCTTTTTTTT-CCACTCCACATGTATCAGTTATAGCT 2038
consensus_15029#1 CTGTACTTTAGAAAGATGCAAGCTTATTAAGTTTAATTTACAAATTGATGTAGAAGTGAA 632
consensus_15029#2 CTGTACTTTAGAAAGATGCAAGCTTATTAAGTTTAATTTACAAATTGATGTAGAAGTGAA 627
consensus_15029#3 ------------------------------------------------------------
consensus_15029#0 CTGTACTTTAGAAAGATGCAAGCTTATTAAGTTTAATNTACAAATTGATGTAGAAGTGAA 2098
consensus_15029#1 TCCAATTGCTGGCAAGTATGGTGCTTGATCTTTTGAACATCAGAACTTGCTAGGTAGGGG 692
consensus_15029#2 TCCAATTGCTGGCAAGTATGGTGCTTGATCTTTTGANCATCAAAAAAAAAAAAAAACCAA 687
consensus_15029#3 ------------------------------------------------------------
consensus_15029#0 TCCAATTGCTGGCAAGTATGGTGCTTGATCTTTTGAACATCAGAACTTGCTAGGTAGGGG 2158
consensus_15029#1 ACAACTGGTCATTGATACATCTATTGCTGCCCAGCGTGCTGATACTATACTCCACTAGTA 752
consensus_15029#2 AAAAAAAAAAAAAAAAANCAAAAAAA---------------------------------- 713
consensus_15029#3 ------------------------------------------------------------
consensus_15029#0 ACAACTGGTCATTGATACATCTATTGCTGCCCAGCGTGCTGATACTAAAA---------- 2208
consensus_15029#1 GTATGTTATATTGTTAAAAAAAA 775
consensus_15029#2 -----------------------
consensus_15029#3 -----------------------
consensus_15029#0 -----------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||