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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15048#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 802 fasta sequence
[CACACCACCCCACCCACCGTTTTCCCCTCTCCTCCCATCCCCCCGCACCCATCTCGCCGTCCTCCTCCTCACCTCACCTCGCCCCGGATCCCCCATCCACCTCGCGACCTCTCCTCTCCCCTCCCCGGCGCTTCACCCACGGCGATGGCGTCGAGGCTGGCGCAGCTACGGTCCAAGGCGGCGCAGGCGTCGGAGCTCGTGTCGAAGCACGGGTGCGCCTACTACAAGGAGGTGATGGAGAAGAACAAGCAGCACGTGGTGCAGCCACCCACCGTGGAGAAGTGCCAGGAGCTCT-CCAAGCAGCTCTTCTACACCCGCCTCGCCAGTTTGCCAGGCCGCTATGAGGCATTTTGGAAGGAATTTGATGGTGTCAAGCAGGTATGGAAGAATAGAAAGGAGCTCAAGGTAGAGGACCTTGGAATTGTGACATTATTTGGAGTTGAGCTTTATGCGTGGTTCTGCGTAGGCGAGATTGTTGGCAGAGGATTCACCATAACCGGCTATAAGGTCTAGATGAGTTCTGATTAAGACCTGGTTTATAAAATACACTGTTAGCTGATGCCTGTCGAAATGACAAAGATACCTCCTGCCTTTTCACAATTTTGGTTATGGAAAGTCTTTCTAGTGCTGGATGTCAGCCAAGACGAGCACATCGTTGCAACACTGCTTCAATAATTTGCTCGATCTCTCGATTGCCATTTTGGCGTCCTGTAATGTGAAATACTGAAATTCCATCTTGCCCCACCCGTCAAATTGTCATTTATTTGTTCTCTTGAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CA758940 [CACACCACCCCACCCACCGTTTTCCCCTCTCCTCCCATCCCCCCGCACCCATCTCGCCGTCCTCCTCCTCACCTCACCTCGCCCCGGATCCCCCATCCACCTCGCGACCTCTCCTCTCCCCTCCCCGGCGCTTCACCCACGGCGATGGCGTCGAGGCTGGCGCAGCTACGGTCCAAGGCGGCGCAGGCGTCGGAGCTCGTGTCGAAGCACGGGTGCGCCTACTACAAGGAGGTGATGGAGAAGAACAAGCAGCACGTGGTGCAGCCACCCACCGTGGAGAAGTGCCAGGAGCTCT CCAAGCAGCTCTTCTACACCCGCCTCGCCAGTTTGCCAGGCCGCTATGAGGCATTTTGGAAGGAATTTGATGGTGTCAAGCAGGTATGGAAGAATAGAAAGGAGCTCAAGGTAGAGGACCTTGGAATTGTGACATTATTTGGAGTTGAGCTTTATGCGTGGTTCTGCGTAGGCGAGATTGTTGGCAGAGGATTCACCATAACCGGCTATAAGGTCTAGATGAGTTCTGATTAAGACCTGGTTTATAAAATACACTGTTAGCTGATGCCTGTCGAAATGACAAAGATACCTCCTGCCTTTTCACAATTTTGGTTATGGAAAGTCTTTCTAGT ]
[+] EMBL CB000943 [ AAGCACGGGTGCGCCTACTACAAGGAGGTGATGGAGAAGAACAAGCAGCACGTGGTGCAGCCACCCACCGTGGAGAAGTGCCAGGAGCTCT CCAAGCAGCTCTTCTACACCCGCCTCGCCAGTTTGCCAGGCCGCTATGAGGCATTTTGGAAGGAATTTGATGGTGTCAAGCAGGTATGGAAGAATAGAAAGGAGCTCAAGGTAGAGGACCTTGGAATTGTGACATTATTTGGAGTTGAGCTTTATG ]
[+] EMBL C98283 [ CTCTCCCAAGCAGCTCTTCTACACCCGCCTCNCCAGTTTGCCAGGCCGCTATGAGGCATTTTGGAAGGAATTTGATGGTGTCAAGCAGGTATGGAAGAATNGAAAGGAGCTCAAGGTAGAGGACCTTGGAATTGTGACNTTATTTGGAGTTGAGCTTTATGCGTGGTTCTGCGTAGGCGAGATTGTTGGCAGAGGATTCACCATAACCGGCTATAAGGTCTAGAAGAGTTCTGATTAAGACCTGGTTTATAAAATACACTGTTAGCTGATGCTTGTCGAAATGACAAAGATACCTCCTGCCTTTTCACAATTTTGTTTATGGAAAGTCTTTCTAGTGCTGGATGTCAGCCAAGACGAGCACATCGTTGCAACACTGCTTCAATAATTTGCTCGATCTCTCGATTGCCATTTTGGCGTCCTGTAATGTGAAATACTGAAATTCCATCTTGCCCCACCCGTCAAATTGTCATTTATTTGTTCTCTTGAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_15048#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 767 fasta sequence
[CATGGACTGAACGAGTAGAAAACCCATCTCGCCGTCCTCCTCCTCCTCACCTCACCTCGCCCCGGATCCCCCATCCACCTCGCGACCTCTCCTCTCCCCTCCCCGGCGCTTCACCCACGGCGATGGCGTCGAGGCTGGCGCAGCTACGGTCCAAGGCGGCGCAGGCGTCGGAGCTCGTGTCGAAGCACGGGTGCGCCTACTACAAGGAGGTGATGGAGAAGAACAAGCAGCACGTGGTGCAGCCACCCACCGTGGAGAAGTGCCAGGAGCTCTCCAAGCAGCTCTTCTACACCCGCCTCGCCAGTTTGCCAGGCCGCTATGAGGCATTTTGGAAGGAATTTGATGGTGTCAAGCAGGTA-TGGAAGAATAGAAAGGAGCTCAAGGTAGAGGACCTTGGAATTGTGACATTATTTGGAGTTGAGCTTTATGCGTGGTTCTGCGTAGGCGAGATTGTTGGCAGAGGATTCACCATAACCGGCTATAA-GGTCTAGAAGAGTTCTGATTAAGACCTGGTTTATAAAATACACTGTTAGCTGATGCTTGTCGAAATGACAAAGATACCTCCTGCCTTTTCACAATTTTGTTTATGGAAAGTCTTTCTAGTG-CTGGATGTCAGCCAAGACGAGCACATCGTTGCAACACTGCTTCAATAATTTGCTCGATCTCTCGATTGCCATTTTGGTGTCCTGTAATGTGAAATACTGAAATTCCATCTTGCCCCACCCGTCAAAAAATCATTTATTTGTTCTCTTGAATCCATCTCAAAC]
[+] EMBL CF291317 [CATGGACTGAACGAGTAGAAAACCCATCTCGCCGTCCTCCTCCTCCTCACCTCACCTCGCCCCGGATCCCCCATCCACCTCGCGACCTCTCCTCTCCCCTCCCCGGCGCTTCACCCACGGCGATGGCGTCGAGGCTGGCGCAGCTACGGTCCAAGGCGGCGCAGGCGTCGGAGCTCGTGTCGAAGCACGGGTGCGCCTACTACAAGGAGGTGATGGAGAAGAACAAGCAGCACGTGGTGCAGCCACCCACCGTGGAGAAGTGCCAGGAGCTCTCCAAGCAGCTCTTCTACACCCGCCTCGCCAGTTTGCCAGGCCGCTATGAGGCATTTTGGAAGGAATTTGATGGTGTCAAGCAGGTA TGGAAGAATAGAAAGGAGCTCAAGGTAGAGGACCTTGGAATTGTGACATTATTTGGAGTTGAGCTTTATGCGTGGTTCTGCGTAGGCGAGATTGTTGGCAGAGGATTCACCATAACCGGCTATAA GGTCTAGAAGAGTTCTGATTAAGACCTGGTTTATAAAATACACTGTTAGCTGATGCTTGTCGAAATGACAAAGATACCTCCTGCCTTTTCACAATTTTG ]
[+] EMBL CF317752 [ gcACCCATCTCGCCGTCCTCCTCCTCCTCACCTCACCTCGCCCCGGATCCCCCATCCACCTCGCGACCTCTCCTCTCCCCTCCCCGGCGCTTCACCCACGGCGATGGCGTCGAGGCTGGCGCAGCTACGGTCCAAGGCGGCGCAGGCGTCGGAGCTCGTGTCGAAGCACGGGTGCGCCTACTACAAGGAGGTGATGGAGAAGAACAAGCAGCACGTGGTGCAGCCACCCACCGTGGAGAAGTGCCAGGAGCTCTCCAAGCAGCTCTTCTACACCCGCCTCGCCAGTTTGCCAGGCCGCTATGAGGCATTTTGGAAGGAATTTGATGGTGTCAAGCAGGTA TGGAAGAATAGAAAGGAGCTCAAGGTAGAGGACCTTGGAATTGTGACATTATTTGGAGTTGAGCTTTATGCGTGGTTCTGCGTAGGCGAGATTGTTGGCAGAGGATTCACCATAACCGGCTATAAGGGTTTAGAAGAGTTCTGATTAAGACCTGGTTTATAAAATACACTGTTAGCTGATGCTTGTCGAAATGACAAAGATACCTCCTGCCTTTTCACAATTTTGTTTATGGAAA ]
[+] EMBL C98282 [ CCGTCCTCCTCCTCCTCACCTCACCTCGCCCCGGATCCCCCATCCACCTCGCGACCTCTCCTCTCCCCTCCCCGGCGCTTCACCCACGGCGATGGCGTCGAGGCTGGCGCA NTACGGTCCAAGGCGGCGCAGGCGTCGGAGCTCGTGTCGAAGCACGGGTGCGCCTACTACAAGGAGGTGATGGAGAAGAACAAGCAGCACGTGGTGCAGCCACCCACCGTGGAGAAGTGCCAGGAGCTCTCCAAGCAGCTCTTCTACACCCGCCTCGCCAGTTTGCCAGGCCGCTATGAGGCATTTTGGAAGGAATTTGATGGTGTCAAGCAGGTA TGGAAGAATAGAAAGGAGCTCAAGGTAGAGGACCTTGGAATTGTGACATTATTTGGAGTTGAGCTTTATGCGTGGTT ]
[+] EMBL CF291079 [ GTCCTCCTCCTCCTCACCTCACCTCGCCCCGGATCCCCCATCCACCTCGCGACCTCTCCTCTCCCCTCCCCGGCGCTTCACCCACGGCGATGGCGTCGAGGCTGGCGCAGCTACGGTCCAAGGCGGCGCAGGCGTCGGAGCTCGTGTCGAAGCACGGGTGCGCCTACTACAAGGAGGTGATGGAGAAGAACAAGCAGCACGTGGTGCAGCCACCCACCGTGGAGAAGTGCCAGGAGCTCTCCAAGCAGCTCTTCTACACCCGCCTCGCCAGTTTGCCAGGCCGCTATGAGGCATTTTGGAAGGAATTTGATGGTGTCAAGCAGGTA TGGAAGAATAGAAAGGAGCTCAAGGTAGAGGACCTTGGAATTGTGACATTATTTGGAGTTGAGCTTTATGCGTGGTTCTGCGTAGGCGAGATTGTTGGCAGAGGATTCACCATAACCGGCTATAA GGTCTAGAAGAGTTCTGATTAAGACCTGGTTTATAAAATACACTGTTAGCTGATGCTTGTCGAAATGACAAAGATACCTCCTGCCTTTT ACAATTTTGTTTATGGAAAGTCTTTCTAGTGCCTGGATGTCAGCCAAGACGAGCACATCGTTGCAACACTGCTTCAATAATTTGCT ]
[+] EMBL OS1520A [ TCCTCCTCCTCCTCACCTCACCTCGCCCCGGATCCCCCATCCACCTCGCGACCTCTCCTCTCCCCTCCCCGGCGCTTCACCCACGGCGATGGCGTCGAGGCTGGCGCAG TACGGTCCAAGGCGGCGCAGGCGTCGGAGCTCGTGTCGAAGCACGGGTGCGCCTACTACAAGGAGGTGATGGAGAAGAACAAGCAGCACGTGGTGCAGCCACCCACCGTGGAGAAGTGCCAGGAGCTCTCCAAGCAGCTCTTCTACAACCGNCTCGNCAGTTTGCCAGGCCGCTATGAGGCATTTTGGAAGGAATTTGATGGTGTNAAGAAGGTATTGGAAGAATAGAAAGNGGGTCAA ]
[+] EMBL AK121212 [ CGCGACCTCTCCTCTCCCCTCCCCGGCGCTTCACCCACGGCGATGGCGTCGAGGCTGGCGCAGCTACGGTCCAAGGCGGCGCAGGCGTCGGAGCTCGTGTCGAAGCACGGGTGCGCCTACTACAAGGAGGTGATGGAGAAGAACAAGCAGCACGTGGTGCAGCCACCCACCGTGGAGAAGTGCCAGGAGCTCTCCAAGCAGCTCTTCTACACCCGCCTCGCCAGTTTGCCAGGCCGCTATGAGGCATTTTGGAAGGAATTTGATGGTGTCAAGCAGGTA TGGAAGAATAGAAAGGAGCTCAAGGTAGAGGACCTTGGAATTGTGACATTATTTGGAGTTGAGCTTTATGCGTGGTTCTGCGTAGGCGAGATTGTTGGCAGAGGATTCACCATAACCGGCTATAA GGTCTAGAAGAGTTCTGATTAAGACCTGGTTTATAAAATACACTGTTAGCTGATGCTTGTCGAAATGACAAAGATACCTCCTGCCTTTTCACAATTTTGTTTATGGAAAGTCTTTCTAGTG CTGGATGTCAGCCAAGACGAGCACATCGTTGCAACACTGCTTCAATAATTTGCTCGATCTCTCGATTGCCATTTTGGTGTCCTGTAATGTGAAATACTGAAATTCCATCTTGCCCCACCCGTCAAATTGTCATTTATTTGTTCTCTTGAATCCATCTCAAAC]
[-] EMBL CF336933 [ AGCTCTCCAAGCAGCTCTTCTACACCCGCCTCGCCAGTTTGCCAGGCCGCTATGAGGCATTTTGGAAGGAATTTGATGGTGTCAAGCAGGTA TGGAAGAATAGAAAGGAGCTCAAGGTAGAGGACCTTGGAATTGTGACATTATTTGGAGTTGAGCTTTATGCGTGGTTCTGCGTAGGCGAGATTGTTGGCAGAGGATTCACCATAACCGGCTATAA GGTTTAGAAGAGTTCTGATTAAGACCTGGTTTATAAAATACACTGTTAGCTGATGCTTGTCGAAATGACAAAGATACCTCCTGCCTTTTCACAATTTTGTTTATGGAAAGTCTTTCTAGTG CTGGATGTCAGCCAAGACGAGCACATCGTTGCAACACTGCTTCAATAATTTGCTCGATCTCTCGATTGCCATTTTGGTGTCCTGTAATGTGAAATACTGAAATTCCATCTTGCCCCACCCGTCAAAAAA ]
[-] EMBL CF291316 [ GCCAGGCCGCTATGAGGCATTTTGGAAGGAATTTGATGGTGTCAAGCAGGTA TGGAAGAATAGAAAGGAGCTCAAGGTAGAGGACCTTGGAATTGTGACATTATTTGGAGTTGAGCTTTATGCGTGGTTCTGCGTAGGCGAGATTGTTGGCAGAGGATTCACCATAACCGGCTATAA GGTCTAGAAGAGTTCTGATTAAGACCTGGTTTATAAAATACACTGTTAGCTGATGCTTGTCGAAATGACAAAGATACCTCCTGCCTTTTCACAATTTTGTTTATGGAAAGTCTTTCTAGTG CTGGATGTCAGCCAAGACGAGCACATCGTTGCAACACTGCTTCAATAATTTGCTCGATCTCTCGATTGCCATTTTGGTGTCCTGTAATGTGAAATACTGAAATTCCATCTTGCCCCACCCGTCAAAAAAaaa ]
[-] EMBL CF337206 [ GCCAGGCCGCTATGAGGCATTTTGGAAGGAATTTGATGGTGTCAAGCAGGTA TGGAAGAATAGAAAGGAGCTCAAGGTAGAGGACCTTGGAATTGTGACATTATTTGGAGTTGAGCTTTATGCGTGGTTCTGCGTAGGCGAGATTGTTGGCAGAGGATTCACCATAACCGGCTATAA GGTTTAGAAGAGTTCTGATTAAGACCTGGTTTATAAAATACACTGTTAGCTGATGCTTGTCGAAATGACAAAGATACCTCCTGCCTTTTCACAATTTTGTTTATGGAAAGTCTTTCTAGTG CTGGATGTCAGCCAAGACGAGCACATCGTTGCAACACTGCTTCAATAATTTGCTCGATCTCTCGATTGCCATTTTGGTGTCCTGTAATGTGAAATACTGAAATTCCATCTTGCCCCACCCGTCAAAAAA ]
consensusID : consensus_15048#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 576 fasta sequence
[GCTGGTCCAAAGAGCATGCATGAGACAATGAGATGGACGGGACACATCTTCTGTGATTTGCCGGTGCCCATGTCTACCTATCATGAGGGAAATGAACGGATTGACGAACTTTGGTTTGCCAGGCCGCTATGAGGCATTTTGGAAGGAATTTGATGGTGTCAAGCAGGTATGGAAGAATAGAAAGGAGCTCAAGGTAGAGGACCTTGGAATTGTGAC-ATTATTTGGAGTTGAGCTTTATGCGTGGTTCTGCGTAGGCGAGATTGTTGGCAGAGGATTCACCATAACCGGCTATAAGGTCTAGAAGAGTTCTGATTAAGACCTGGTTTATAAAAT-ACACTGTTAGCTGATGCTTGTC-GAAATGACAAAGATACCTCCTGCCT-TTT-CAC-AATTTT-GTTTATGGAAAGTCTTTCTAGT-GCTGGATGTCAGCCAAGAC-GAGCACATCGTTGCAACACTGCTTCAATAATTTGCTCGATCTCTCGATTGCCATTTTGGTGTCCTGTAATGTGAAATACTGAAATTCCATCTT-GCCCCACCCGTCAAATTGTCAAAAAAAAAAAAAAAAAAAANAAAAAAAAA]
[-] EMBL CB636172 [GCTGGTCCAAAGAGCATGCATGAGACAATGAGATGGACGGGACACATCTTCTGTGATTTGCCGGTGCCCATGTCTACCTATCATGAGGGAAATGAACGGATTGACGAACTTTGGTTTGCCAGGCCGCTATGAGGCATTTTGGAAGGAATTTGATGGTGTCAAGCAGGTATGGAAGAATAGAAAGGAGCTCAAGGTAGAGGACCTTGGAATTGTGAC ATTATTTGGAGTTGAGCTTTATGCGTGGTTCTGCGTAGGCGAGATTGTTGGCAGAGGATTCACCATAACCGGCTATAAGGTCTAGAAGAGTTCTGATTAAGACCTGGTTTATAAAAT ACACTGTTAGCTGATGCTTGTC GAAATGACAAAGATACCTCCTGCCT TTT CAC AATTTT GTTTATGGAAAGTCTTTCTAGT GCTGGATGTCAGCCAAGAC GAGCACATCGTTGCAACACTGCTTCAATAATTTGCTCGATCTCTCGATTGCCATTTTGGTGTCCTGTAATGTGAAATACTGAAATTCCATCTT GCCCCACCCGTCAAA ]
[+] EMBL BI796657 [ TCAA GTAGAGGACCTTGGAATTGTGACAATTATTTGGA TTGAGCTTTATGCGTGGTTCTGCGTAGGCGAGATTGTTGGCAGAGGATTCACCATAACCGGCTATAAGGTCTAGATGAGTTCTGATTAAGACCTGGTTTATAAAATGACACTGTTAGCTGATGCTTGTCAGAAATGACAAAGATACCTCCTGCCTGTTTGCACAAATTTTGGTTTATGGAAAGTCTTTCTAGTGGCTGGATGTCAGCCAAGACAGAGCACATCGTTGCAACACGGCTTCAATAATTTGCTCGATCTCTCGATTGCCATTTTGGTGTCCTGTAATGTGAAATACGGAAATTCCATCTTGGCCCCAaaaaaaa ]
[+] EMBL AU071183 [ GTGGTTCTGCGTAGGCGAGATTGTTGGCAGAGGATTCACCATAACCGGCTATAAGGTCTAGAAGAGTTCTGATTAAGACCTGGTTTATAAAAT ACACTGTTAGCTGATGCTTGTC GAAATGACAAAGATACCTCCTGCCT TTT CAC AATTTT GTTTATGGAAAGTCTTTCTAGT GCTGGATGTCAGCCAAGAC GAGCACATCGTTGCAACACTGCTTCAATAATTTGCTCGATCTCTCGATTGCCATTTTGGTGTCCTGTAATGTGAAATACTGAAATTCCATCTT GCCCCACCCGTCAAATTGTCAAAAAAAAAAAAAAAAAAAANAAAAAAAAA]
consensusID : consensus_15048#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 428 fasta sequence
[CANGACAACGCCAACTTACCCCTCCCNATTGGACGCCTANTCCCTTGGGACGTCTTCTTAAGAGACGATGTGGCTCGAAACGACGAACGCCGTGTTCTGCGATACAGGNCGACGACTATGGTTGGGCACGACGGACTNTCACCCAATAACCCCGGCCTAATAACGGGTTCTACGAACGACGTTACTGAATTAAAGACCCTGGATTTATAAAATACACTGTTACGCCTGATGCTTGTCGAAATGACAAAGATACCTCCTGCCTTTTCACAATTTTGTTTATGGAAAGTCTTTCTAGTGCTGGATGTCAGCCAAGACGAGCACATCGTTGCAACACTGCTTCAATAATTTGCTCGATCTCTCGATTGCCATTTTGGTGTCCTGTAATGTGAAATACTGAAATTCCATCTAAAAAAAAACCACCCACAAAA]
[+] EMBL BQ172734 [CANGACAACGCCAACTTACCCCTCCCNATTGGACGCCTANTCCCTTGGGACGTCTTCTTAAGAGACGATGTGGCTCGAAACGACGAACGCCGTGTTCTGCGATACAGGNCGACGACTATGGTTGGGCACGACGGACTNTCACCCAATAACCCCGGCCTAATAACGGGTTCTACGAACGACGTTACTGAATTAAAGACCCTGGATTTATAAAATACACTGTTACGCCTGATGCTTGTCGAAATGACAAAGATACCTCCTGCCTTTTCACAATTTTGTTTATGGAAAGTCTTTCTAGTGCTGGATGTCAGCCAAGACGAGCACATCGTTGCAACACTGCTTCAATAATTTGCTCGATCTCTCGATTGCCATTTTGGTGTCCTGTAATGTGAAATACTGAAATTCCATCTAAAAAAAAACCACCCACAAAA]
consensusID : consensus_15048#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 325 fasta sequence
[ACCTCGCGACCTCTCCTCTCCCCTCCCCGGCGCTTCACCCACGGCGATGGCGTCGAGGCTGGCGCAGCTACGGTCCAAGGCGGCGCAGGCGTCGGAGCTCGTGTCGAAGCACGGGTGCGCCTACTACAAGGAGGTGATGGAGAAGAACAAGCAGCACGTGGTGCAGCCACCCACCGTGGAGAAGTGCCAGGAGCTCTCCAAGCAGCTCTTCTACACCCGCCTCGCCAGGTGATCCCCGGATTTCACCCCCGCTGTGCCTGTTCATGCGGCTCCATTTGGTCGCTGTTTCGTAGTTGGCGGTGTGTTGCGATCTGTTGGCAATTGC]
[+] EMBL CB636171 [ACCTCGCGACCTCTCCTCTCCCCTCCCCGGCGCTTCACCCACGGCGATGGCGTCGAGGCTGGCGCAGCTACGGTCCAAGGCGGCGCAGGCGTCGGAGCTCGTGTCGAAGCACGGGTGCGCCTACTACAAGGAGGTGATGGAGAAGAACAAGCAGCACGTGGTGCAGCCACCCACCGTGGAGAAGTGCCAGGAGCTCTCCAAGCAGCTCTTCTACACCCGCCTCGCCAGGTGATCCCCGGATTTCACCCCCGCTGTGCCTGTTCATGCGGCTCCATTTGGTCGCTGTTTCGTAGTTGGCGGTGTGTTGCGATCTGTTGGCAATTGC]
[+] EMBL CB636283 [ACCTCGCGACCTCTCCTCTCCCCTCCCCGGCGCTTCACCCACGGCGATGGCGTCGAGGCTGGCGCAGCTACGGTCCAAGGCGGCGCAGGCGTCGGAGCTCGTGTCGAAGCACGGGTGCGCCTACTACAAGGAGGTGATGGAGAAGAACAAGCAGCACGTGGTGCAGCCACCCACCGTGGAGAAGTGCCAGGAGCTCTCCAAGCAGCTCTTCTACACCCGCCTCGCCAGGTGATCCCCGGATTTCACCCCCGCTGTGCCTGTTCATGCGGCTCCATTTGGTCGCTGTTTCGTAGTTGGCGGTGTGTTGCGATCTGTTGGCAATTG ]
consensusID : consensus_15048#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 285 fasta sequence
[GCTATAAGGTCTAGAAGAGTTCTGATTAAGACCTGGTTTATAAAATACACTGTTAGCTGATGCTTGTCGAAATGACAAAGATACCTCCTGCCTTTTCACAATTTTGTTTATGGAAAGTCTTTCTAGTGCTGGATGTCAGCCAAGACGAGCACATCGTTGCAACACTGCTTCAATAATTTGCTCGATCTCTCGATTGCCATTTTGGTGTCCTGTAATGTGAAATACTGAAATTCCATCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CA998492 [GCTATAAGGTCTAGAAGAGTTCTGATTAAGACCTGGTTTATAAAATACACTGTTAGCTGATGCTTGTCGAAATGACAAAGATACCTCCTGCCTTTTCACAATTTTGTTTATGGAAAGTCTTTCTAGTGCTGGATGTCAGCCAAGACGAGCACATCGTTGCAACACTGCTTCAATAATTTGCTCGATCTCTCGATTGCCATTTTGGTGTCCTGTAATGTGAAATACTGAAATTCCATCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15048#3 ------------------------------------------------------------
consensus_15048#5 ------------------------------------------------------------
consensus_15048#2 ------------------------------------------------------------
consensus_15048#0 CACACCACCCCACCCACCGTTTTCCCCTCTCCTCCCATCCCCCCGCACCCATCTCGCCGT 60
consensus_15048#1 ----------------------CATGGACTGAACGAGTAGAAAACCCATCTCGCCGTCCT 38
consensus_15048#4 ------------------------------------------------------------
consensus_15048#3 ------------------------------------------------------------
consensus_15048#5 ------------------------------------------------------------
consensus_15048#2 ------------------------------------------------------------
consensus_15048#0 CCTCCTCCTCACCTCACCTCGCCCCGGATCCCCCATCCACCTCGCGACCTCTCCTCTCCC 120
consensus_15048#1 CCTCCTCCTCACCTCACCTCGCCCCGGATCCCCCATCCACCTCGCGACCTCTCCTCTCCC 98
consensus_15048#4 ------------------------------------------------------------
consensus_15048#3 ------------------------------------------------------------
consensus_15048#5 ------------------------------------------------------------
consensus_15048#2 ------------------------------------------------------------
consensus_15048#0 CTCCCCGGCGCTTCACCCACGGCGATGGCGTCGAGGCTGGCGCAGCTACGGTCCAAGGCG 180
consensus_15048#1 CTCCCCGGCGCTTCACCCACGGCGATGGCGTCGAGGCTGGCGCAGCTACGGTCCAAGGCG 158
consensus_15048#4 ------------------------------------------------------------
consensus_15048#3 ------------------------------------------------------------
consensus_15048#5 ------------------------------------------------------------
consensus_15048#2 --------------------------------GCTGGTCCAAAGAGCATGCATGAGACAA 28
consensus_15048#0 GCGCAGGCGTCGGAGCTCGTGTCGAAGCACGGGTGCGCCTACTACAAGGAGGTGATGGAG 240
consensus_15048#1 GCGCAGGCGTCGGAGCTCGTGTCGAAGCACGGGTGCGCCTACTACAAGGAGGTGATGGAG 218
consensus_15048#4 ------------------------------------------------------------
consensus_15048#3 ------------------------------------------------------------
consensus_15048#5 ------------------------------------------------------------
consensus_15048#2 TGAGATGGACGGGACACATCTTCTGTGATTTGCCGGTGCCCATGTCTACCTATCATGAGG 88
consensus_15048#0 AAGAACAAGCAGCACGTGGTGCAGCCACCCACCGTGGAGAAGTGCCAGGAGCTCTCCAAG 300
consensus_15048#1 AAGAACAAGCAGCACGTGGTGCAGCCACCCACCGTGGAGAAGTGCCAGGAGCTCTCCAAG 278
consensus_15048#4 ------------------------------------------------------------
consensus_15048#3 --------------------------CANGACAACGCCAACTTACCCCTCCCNATTGGAC 34
consensus_15048#5 ------------------------------------------------------------
consensus_15048#2 GAAATGAACGGATTGACGAACTTTGGTTTGCCAGGCCGCTATGAGGCATTTTGGAAGGAA 148
consensus_15048#0 CAGCTCTTCTACACCCGCCTCGCCAGTTTGCCAGGCCGCTATGAGGCATTTTGGAAGGAA 360
consensus_15048#1 CAGCTCTTCTACACCCGCCTCGCCAGTTTGCCAGGCCGCTATGAGGCATTTTGGAAGGAA 338
consensus_15048#4 ------------------------------------------------------------
consensus_15048#3 GCCTANTCCCTTGGGACGTCTTCTTAAGAGACGATGTGGCTCGAAACGACGAAC------ 88
consensus_15048#5 ------------------------------------------------------------
consensus_15048#2 TTTGATGGTGTCAAGCAGGTATGGAAGAATAGAAAGGAGCTCAAGGTAGAGGACCTTGGA 208
consensus_15048#0 TTTGATGGTGTCAAGCAGGTATGGAAGAATAGAAAGGAGCTCAAGGTAGAGGACCTTGGA 420
consensus_15048#1 TTTGATGGTGTCAAGCAGGTATGGAAGAATAGAAAGGAGCTCAAGGTAGAGGACCTTGGA 398
consensus_15048#4 -------------------------------------ACCTCGCGACCTCTCCTCT---- 19
consensus_15048#3 -----GCCGTGTTCTGCGATACAGGN-CGACGACTATGGTTGGGCACGACGGACTNTCAC 142
consensus_15048#5 ------------------------------------------------------------
consensus_15048#2 ATTGTGACATTATTTGGAGTTGAGCT-TTATGCGTGGTTCTGCGTAGGCGAGATTGTTGG 267
consensus_15048#0 ATTGTGACATTATTTGGAGTTGAGCT-TTATGCGTGGTTCTGCGTAGGCGAGATTGTTGG 479
consensus_15048#1 ATTGTGACATTATTTGGAGTTGAGCT-TTATGCGTGGTTCTGCGTAGGCGAGATTGTTGG 457
consensus_15048#4 -----CCCCTCCCCGGCGCTTCACCCACGGCGATGGCGTCGAGGCTGGCGCAGCTACGGT 74
consensus_15048#3 CCAATAAC---CCCGGCCTAATAACGGGTTCTACGAACGACGTTACTGAATTAAAGACCC 199
consensus_15048#5 --------------------GCTATAAGGTCTAGAAGAG----TTCTGATT--AAGACCT 34
consensus_15048#2 CAGAGGATTCACCATAACCGGCTATAAGGTCTAGAAGAG----TTCTGATT--AAGACCT 321
consensus_15048#0 CAGAGGATTCACCATAACCGGCTATAAGGTCTAGATGAG----TTCTGATT--AAGACCT 533
consensus_15048#1 CAGAGGATTCACCATAACCGGCTATAAGGTCTAGAAGAG----TTCTGATT--AAGACCT 511
consensus_15048#4 CCAAGGCGGCGCAGGCGTCGGAGCTCGTGTCGAAGCACGGGTGCGCCTACTACAAGGAGG 134
** * * * * * ***
consensus_15048#3 TGGATTTATAA-AATACACTGTTACGCCTGATGCTTGTCGAAATGACAAAGATACCTCCT 258
consensus_15048#5 --GGTTTATAA-AATACACTGTTAG--CTGATGCTTGTCGAAATGACAAAGATACCTCCT 89
consensus_15048#2 --GGTTTATAA-AATACACTGTTAG--CTGATGCTTGTCGAAATGACAAAGATACCTCCT 376
consensus_15048#0 --GGTTTATAA-AATACACTGTTAG--CTGATGCCTGTCGAAATGACAAAGATACCTCCT 588
consensus_15048#1 --GGTTTATAA-AATACACTGTTAG--CTGATGCTTGTCGAAATGACAAAGATACCTCCT 566
consensus_15048#4 T-GATGGAGAAGAACAAGCAGCACGTGGTGCAGCCACCCACCGTGGAGAAG-TGCCAGGA 192
* * * ** ** * * * ** ** * ** *** * **
consensus_15048#3 GCCTTTTCACAATTTTGTTTATGGAAAGTCTTTCTAGTG----CTGGATGTCAGCCAAGA 314
consensus_15048#5 GCCTTTTCACAATTTTGTTTATGGAAAGTCTTTCTAGTG----CTGGATGTCAGCCAAGA 145
consensus_15048#2 GCCTTTTCACAATTTTGTTTATGGAAAGTCTTTCTAGTG----CTGGATGTCAGCCAAGA 432
consensus_15048#0 GCCTTTTCACAATTTTGGTTATGGAAAGTCTTTCTAGTG----CTGGATGTCAGCCAAGA 644
consensus_15048#1 GCCTTTTCACAATTTTGTTTATGGAAAGTCTTTCTAGTG----CTGGATGTCAGCCAAGA 622
consensus_15048#4 GCTCTCCAAGCAGCTCTTCTACACCCGCCTCGCCAGGTGATCCCCGGATTTCACCCCCGC 252
** * * * * ** * *** * **** *** ** *
consensus_15048#3 CGAGCACATCGTTGCAACACTGCTTCAATAATTTGCTCGATCTCTCGATTGCCATTTTGG 374
consensus_15048#5 CGAGCACATCGTTGCAACACTGCTTCAATAATTTGCTCGATCTCTCGATTGCCATTTTGG 205
consensus_15048#2 CGAGCACATCGTTGCAACACTGCTTCAATAATTTGCTCGATCTCTCGATTGCCATTTTGG 492
consensus_15048#0 CGAGCACATCGTTGCAACACTGCTTCAATAATTTGCTCGATCTCTCGATTGCCATTTTGG 704
consensus_15048#1 CGAGCACATCGTTGCAACACTGCTTCAATAATTTGCTCGATCTCTCGATTGCCATTTTGG 682
consensus_15048#4 TGTGCCTGTTCATGCG-----GCTCCATTTGGTCGCT--GTTTCGTAGTTGGCGGTGTGT 305
* ** * *** *** ** * * *** * ** *** * * **
consensus_15048#3 TGTCCTGTAATGTGAAATACTGAAATTCCATCTAAA-------AAAAAACCACCCACAAA 427
consensus_15048#5 TGTCCTGTAATGTGAAATACTGAAATTCCATCTAAA-------AAAAAAAAAAAAAAAAA 258
consensus_15048#2 TGTCCTGTAATGTGAAATACTGAAATTCCATCTTGCCCCACCCGTCAAATTGTCAAAAAA 552
consensus_15048#0 CGTCCTGTAATGTGAAATACTGAAATTCCATCTTGCCCCACCCGTCAAATTGTCATTTAT 764
consensus_15048#1 TGTCCTGTAATGTGAAATACTGAAATTCCATCTTGCCCCACCCGTCAAAAAATCATTTAT 742
consensus_15048#4 TGCGATCTGTTGGCAATTGC---------------------------------------- 325
* * * ** ** * *
consensus_15048#3 A------------------------------------- 428
consensus_15048#5 AAAAAAAAAAAAAAAAAAAAAAAAAAA----------- 285
consensus_15048#2 AAAAAAAAAAAAAANAAAAAAAAA-------------- 576
consensus_15048#0 TTGTTCTCTTGAAAAAAAAAAAAAAAAAAAAAAAAAAA 802
consensus_15048#1 TTGTTCTCTTGAATCCATCTCAAAC------------- 767
consensus_15048#4 --------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||