These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15053#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 16 consensus length = 1258 fasta sequence [CGCGCCGCGCCTCGCCTCGCCTCGCCTCACCTCACCTCACCTCACCCTCCGCCTCGTCTCCTTCCCCCCTTTCCTCTACCCACGCACGCCCTCTCTCCCATCCCAGCCGTAGCCGCGCCGTGACTTGTCTCGATCGGCGGCGAGGAGGAGGGCTTCCGTTCCCTGGCCGGTGGGGGAGGATCAGGCGGGGGGGCGGCGGGGAGGGGGAGGAGATCGGTCTCGGTCGATCCGCGCGCGGCGGCGATGGCGCGGGAGAGGCGGGAGATAAAGAGGATAGAGAGCGCGGCGGCGCGGCAGGTCACCTTCTCCAAGCGCCGGCGCGGCCTGTTCAAGAAGGCCGAGGAGCTCTCCGTGCTCTGCGACGCCGACGTC-GCGC-TCATCGTCTTCTCCTCCACGGGGAAGCTATCCCACTTCGCAAGCTCCAGTATGAATGAAATCATCGACAAGTACAACACACATTCTAATAATCTGGGGAAAGCAGAACAGCCTTCGCTCGACTTGAATTTAGAACATAGCAAGTATGCACATTTGAATGAGCAACTTGCGGAAGCTAGTCTCCGGCTTAGACAAATGAGAGGTGAGGAGCTTGAGGGATTGAGCATTGATGAACT-CCAGCAGCTAGAGAAGAACCTGGAAGCTGGTCTGCACAGGGTGATGCTGACAAAGGATCAACAATTTATGGAGCAGATCAGTGAACTCCAGCGG-AAGAGTTCACAGCTGGCAGAGGAGAACATGCAACTCAGAAACCAGGTATCCCAGATATCACCAGCTGAGAAGCAAGTTGTTGATACTGAAAATTTTGTTACCGAAGGACAGTCCTCTGAATCTGTGATGACTGCATTGCATTCTGGAAGTTCACAGTCGCAGGATAATGATGATGGCTCGGATGTATCCCTGAAATTAGGGCTGCCTTGTGGTGCATGGAAGTAACTGAAAGGAAAAAAAAAGCATCCTTGCAGATCTGGTTGGAGTCGTTGCGGCATCCAGGGGAGAAACGCTTGTGTTATTCCCAAACCCAGACT-GCAATAATATAATCTTGCGTTGGAAGCGAGATCAGTTAACCTGATTTATCATCCTTGTGGCTGCATGATGCGATGTTCCGCTTGTACTGTTCGCTAGGATCTTGACTAAACTTTGAGATCTATGTGCCGTTTAATTATCCCATCGCTATTGGCACTCCTTAT-GCGATACATCATATATGCACTTTGTTGCTATCTTAATTATGATGCGTCTTTTGCAGCGTTCTAAAAAAAAAAAA] [+] EMBL CB652556 [CGCGCCGCGCCTCGCCTCGCCTCGCCTCACCTCACCTCACCTCACCCTCCGCCTCGTCTCCTTCCCCCCTTTCCTCTACCCACGCACGCCCTCTCTCCCATCCCAGCCGTAGCCGCGCCGTGACTTGTCTCGATCGGCGGCGAGGAGGAGGGCTTCCGTTCCCTGGCCGGTGGGGGAGGATCAGGCGGGGGGGCGGCGGGGAGGGGGAGGAGATCGGTCTCGGTCGATCCGCGCGCGGCGGCGATGGCGCGGGAGAGGCGGGAGATAAAGAGGATAGAGAGCGCGGCGGCGCGGCAGGTCACCTTCTCCAAGCGCCGGCGCGGCCTGTTCAAGAAGGCCGAGGAGCTCTCCGTGCTCTGCGACGCCGACGTC GCGC TCATCGTCTTCTCCTCCACGGGGAAGCTATCCCACTTCGCAAGCTCCAGTATGAATGAAATCATCGACAAGTACAACACACATTCTAATAATCTGGGGAAAGCAGAACAGCCTTCGCTCGACTTGAATTTAGAACATAGCAAGTATGCACATTTGAATGAGCAACTTGCGGAAGCTAGTCTCCGGCTTAGACAAATGAGAGGTGAGGAGCTTGAGGGATTGAGCATTGATGAACT CCAGCAGCTAGAGAAGAACCTGGAAGCTGGTCTGCACAGGGTGATGCTGACAAAGGATCAACAATTTATGGAGCAGATCAGTGAACTCCAGCGG AAGAGTTCACAGCTGGCAGAGGAGAACATGCAACTCAGAAACCAGGTATCCCAGATATCACCAGCTGAGAAGCAAGTTGTTGATACTGAAAAT ] [+] EMBL AK070121 [ CCTCGCCTCGCCTCGCCTCACCTCACCTCACCTCACCCTCCGCCTCGTCTCCTTCCCCCCTTTCCTCTACCCACGCACGCCCTCTCTCCCATCCCAGCCGTAGCCGCGCCGTGACTTGTCTCGATCGGCGGCGAGGAGGAGGGCTTCCGTTCCCTGGCCGGTGGGGGAGGATCAGGCGGGGGGGCGGCGGGGAGGGGGAGGAGATCGGTCTCGGTCGATCCGCGCGCGGCGGCGATGGCGCGGGAGAGGCGGGAGATAAAGAGGATAGAGAGCGCGGCGGCGCGGCAGGTCACCTTCTCCAAGCGCCGGCGCGGCCTGTTCAAGAAGGCCGAGGAGCTCTCCGTGCTCTGCGACGCCGACGTC GCGC TCATCGTCTTCTCCTCCACGGGGAAGCTATCCCACTTCGCAAGCTCCAGTATGAATGAAATCATCGACAAGTACAACACACATTCTAATAATCTGGGGAAAGCAGAACAGCCTTCGCTCGACTTGAATTTAGAACATAGCGAGTATGCACATTTGAATGAGCAACTTGGGGAAGCTAGTCTCCGGCTTAGACAAATGAGAGGTGAGGAGCTTGAGGGATTGAGCATTGATGAACT CCAGCAGCTAGAGAGGAACCTGGAAGCTGGTCTGCACAGGGTGATGCTGACAAAGGATCAACAATTTATGGAGCAGATCAGTGAACTCCAGCGG AAGAGTTCACAGCTGGCAGAGGAGAACATGCAACTCAGAAACCAGGTATCCCAGATATCACCAGCTGAGAAGCAAGTTGTTGATACTGAAAATTTTGTTACCGAAGGACAGTCCTCTGAATCTGTGATGACTGCATTGCATTCTGGAAGTTCACAGTCGCAGGATAATGATGATGGCTCGGATGTATCCCTGAAATTAGGGCTGCCTTGTGGTGCATGGAAGTAACTGAAAGGAAAAAAAAAGCATCCTTGCAGATCTGGTTGGAGTCGTTGCGGCATCCAGGGGAGAAACGCTTGTGTTATTCCCAAACCCAGACT GCAATAATATAATCTTGCGTTGGAAGCGAGATCAGTTAACCTGATTTATCATCCTTGTGGCTGCATGATGCGATGTTCCGCTTGTACTGTTCGCTAGGATCTTGACTAAACTTTGAGATCTATGTGCCGTTTAATTATCCCATCGCTATTGGCACTCCTTAT GCGATACATCATATATGCACTTTGTTGCTATCTTAATTATGATGCGTCTTT ] [+] EMBL AB003322 [ CCCTGGCCGGTGGGGGAGGATCAGGCGGGGGGGCGGCGGGGAGGGGGAGGAGATCGGTCTCGGTCGATCCGCGCGCGGCGGCGATGGCGCGGGAGAGGCGGGAGATAAAGAGGATAGAGAGCGCGGCGGCGCGGCAGGTCACCTTCTCCAAGCGCCGGCGCGGCCTGTTCAAGAAGGCCGAGGAGCTCTCCGTGCTCTGCGACGCCGACGTC GCGC TCATCGTCTTCTCCTCCACGGGGAAGCTATCCCACTTCGCAAGCTCCAGTATGAATGAAATCATCGACAAGTACAACACACATTCTAATAATCTGGGGAAAGCAGAACAGCCTTCGCTCGACTTGAATTTAGAACATAGCAAGTATGCACATTTGAATGAGCAACTTGCGGAAGCTAGTCTCCGGCTTAGACAAATGAGAGGTGAGGAGCTTGAGGGATTGAGCATTGATGAACT CCAGCAGCTAGAGAAGAACCTGGAAGCTGGTCTGCACAGGGTGATGCTGACAAAGGATCAACAATTTATGGAGCAGATCAGTGAACTCCAGCGG AAGAGTTCACAGCTGGCAGAGGAGAACATGCAACTCAGAAACCAGGTATCCCAGATATCACCAGCTGAGAAGCAAGTTGTTGATACTGAAAATTTTGTTACCGAAGGACAGTCCTCTGAATCTGTGATGACTGCATTGCATTCTGGAAGTTCACAGTCGCAGGATAATGATGATGGCTCGGATGTATCCCTGAAATTAGGGCTGCCTTGTGGTGCATGGAAGTAACTGAAAGGAAAAAAAAAGCATCCTTGCAGATCTGGTTGGAGTCGTTGCGGCATCCAGGGGAGAAACGCTTGTGTTATTCCCAAACCCAGACT GCAATAATATAATCTTGCGTTGGAAGCGAGATCAGTTAACCTGATTTATCATCCTTGTGGCTGCATGATGCGATGTTCCGCTTGTACTGTTCGCTAGGATCTTGACTAAACTTTGAGATCTATGTGCCGTTTAATTATCCCATCGCTATTGGCACTCCTTAT GCGATACATCATATATGCACTTTGTTGCTATCTTAATTATGATGCGTCTTTT ] [+] EMBL C26796 [ CCCTGGCCGGTGGGGGAGGATCAGGCGGGGGGGCGGCGGGGAGGGGGAGGAGATCGGTCTCGGTCGATCCGCGCGCGGCGGCGATGGCGCGGGAGAGGCGGGAGATAAAGAGGATAGAGAGCGCGGCGGC NGNCAGGTCACCTTCTCCAAGCGCCGGCGCGGCCTGTTCAAGAAGGCCGAGGAGCTCTCCGTGCTCTGCGACGCCGACGTN G GCTTCATCGTCTTCTCCTCCACGGGGAAGCTATCCCACTTCGCAAGCTCCAGTATGAATGAAATCATCGACAAGTACAACACACATTCTAATAATCTGGGGAAAGCAGAACAGCCTTCGCTCGACTTGAATTTAGAACATAGCAAGTAT ] [+] EMBL CF322477 [ GTCGATCCGCGCGCGGCGGCGATGGCGCGGGAGAGGCGGGAGATAAAGAGGATAGAGAGCGCGGCGGCGCGGCAGGTCACCTTCTCCAAGCGCCGGCGCGGCCTGTTCAAGAAGGCCGAGGAGCTCTCCGTGCTCTGCGACGCCGACGTC GCGC TCATCGTCTTCTCCTCCACGGGGAAGCTATCCCACTTCGCAAGCTCCAGTATGAATGAAATCATCGACAAGTACAACACACATTCTAATAATCTGGGGAAAGCAGAACAGCCTTCGCTCGACTTGAATTTAGAACATAGCAAGTATGCACATTTGAATGAGCAACTTGCGGAAGCTAGTCTCCGGCTTAGACAAATGAGAGGTGAGGAGCTTGAGGGATTGAGCATTGATGAACT CCAGCAGCTAGAGAAGAACCTGGAAGCTGGTCTGCACAGGGTGATGCTGACAAAGGATCAACAATTTATGGAGCAGATCAGTGAACTCCAGCGGNAAGAGTTCACAGCTGGCAGAGGAGAACATGCAACTCAGAAACCAGGTATCCCAGATATCACC ] [+] EMBL C74765 [ ATGGCGCGGGAGAGGCGGGAGATAAAGAGGATAGAGAGCGCGGCGGC NGGCAGGTCACCTTCTCCAAGCGCCGGCGCGGCCTGTTCAAGAAGGCCGAGGAGCTCTCCGTGCTCTGCGACGCCGACGTCNGC N TCATCGTCTTCTCCTCCACGGGGAAGCTATCCCACTTCGCAAGCTCCAGTATGAATGAAATCATCGACAAGTACAACACACATTCTAATAATCTGGGGAAAGCAGAACAGCCTTCGCTCGACTTGAATTTAGAACATAGCAAGTATGCACATTTGAATGAGCAACTTGCGGAA CTAGTCTCCGGCTTA ] [+] EMBL CF325684 [ GATAGAGAGCGCGGCGGCGCGGCAGGTCACCTTCTCCAAGCGCCGGCGCGGCCTGTTCAAGAAGGCCGAGGAGCTCTCCGTGCTCTGCGACGCCGACGTC GCGC TCATCGTCTTCTCCTCCACGGGGAAGCTATCCCACTTCGCAAGCTCCAGTATGAATGAAATCATCGACAAGTACAACACACATTCTAATAATCTGGGGAAAGCAGAACAGCCTTCGCTCGACTTGAATTTAGAACATAGCAAGTATGCACATTTGAATGAGCAACTTGCGGAAGCTAGTCTCCGGCTTACACAAATGACAGGTGAGGAGCTTGAGGGATTGAGC ] [+] EMBL OSS13245A [ CGGCGGCGGGNCAGGTCACCTTCTCCAAGCGCCGGCGCGGCCTGTTCAAGAAGGCCGAGGAGCTCTCCGTGCTCTGCGACGCCGACGTC NGNC TCATCGTCTTCTCCTCCACGGGGAAGCTATCCCACTTCGCAAGCTCCAGTATGAATGAAATCATCGACAAGTACAACACACATTCTAATAATCTGGGGAAAGCAGAACAGCCTTCGCTCGACTTGAATTTAGAACATAGCAAGTATGCACATTTGAATGAGCAACTTGCGGAAGTAAGTCTCCGGCTTAGACAAATGAGAGGTGAGGAGCTTNAGGGATTNAGCATTGATGAACTCCCAGCAG ] [+] EMBL AU174747 [ TCCACGGGGAAGCTATCCCACTTCGCAAGCTCCAGTATGAATGAAATCATCGACAAGTACAACACACATTCTAATAATCTGGGGAAAGCAGAACAGCCTTCGCTCGACTTGAATTTAGAACATAGCAAGTATGCACATTTGAATGAGCAACTTGCGGAAGCTAGTCTCCGGCTTAGACAAATGAGAGGTGAGGAGCTTGAGGGATTGAGCATTGATGAACT CCAGCAGCTAGAGAAGAACCTGGAAGCTGGTCTGCACAGGGTGATGCTGACAAAGGATCAACAATTTATGGAGCAGATCAGTGAACTCCAGCGG AAGAGTTCACAGCTGGCAGAGGAGAACATGCAACTCAGAAACCAGGTATCCCAGATATCACCAGCTGAGAAGCAAGTTGTTGATACTGAAAAT ] [+] EMBL AU077565 [ AAGTACAACACACATTCTAATAATCTGGGGAAAGCAGAACAGCCTTCGCTCGACTTGAATTTAGAACATAGCAAGTATGCACATTTGAATGAGCAACTTGCGGAAGCTAGTCTCCGGCTTAGACAAATGAGAGGTGAGGAGCTTGAGGGATTGAGCATTGATGAACT CCAGCAGCTAGAGAAGAACCTGGAAGCTGGTCTGCACAGGGTGATGCTGACAAAGGATCAACAATTTATGGAGCAGATCAGTGAACTCCAGCGG AAGAGTTCACAGCTGGCAGAGGAGAACATGCAACTCAGAAACCAGGTATCCCAGATATCACCAGCTGAGAAGCAAGTTGTTGATACTGAAAATTTTGTTACCGAAGGACAGTCCTCTGAATCTGTGATGACTGCATTGCATTCTGGAAGTTCACAGTCGCAGGATAATGAT ] [+] EMBL AU030918 [ TGATACTGAAAATTTTGTTACCGAA GACAGTCCTCTGAATCTGTGATGACTGCATTGCATTCTGGAAGTTCACAGTCGCAGGATAATGATGATGGCTCGGATGTATCCCTGAAATTAGGGCTGCCTTGTGGTGCATGGAAGTAACTGAAAGGAAAAAAAAAGCATCCTTGCAGATCTGGTTGGAGTCGTTGCGGCATCCAGGGGAGAAACGCTTGTGTTATTCCCAAACCCAGACTNGCAATAATATAATCTTGCGTTGGAAGCGAGATCAGTTAACCTGATTTATCATCCTTGTGGCTGCATGATGCGATGTTCCGCTTGTACTGTTCGCTAGGATCTTGACTAAACTTTGAGATCTATGTGCCG TTNATTATCCCATCGCAATNGGCACTCC TATGGNGAAAC TCCTANATGGACTTGGTgnc ] [+] EMBL AU174746 [ TGTTACCGAAGGACAGTCCTCTGAATCTGTGATGACTGCATTGCATTCTGGAAGTTCACAGTCGCAGGATAATGATGATGGCTCGGATGTATCCCTGAAATTAGGGCTGCCTTGTGGTGCATGGAAGTAACTGAAAGGAAAAAAAAAGCATCCTTGCAGATCTGGTTGGAGTCGTTGCGGCATCCAGGGGAGAAACGCTTGTGTTATTCCCAAACCCAGACT GCAATAATATAATCTTGCGTTGGAAGCGAGATCAGTTAACCTGATTTATCATCCTTGTGGCTGCATGATGCGATGTTCCGCTTGTACTGTTCGCTAGGATCTTGACTAAACTTTGAGATCTATGTGCCGTTTAATTATCCCATCGCTATTGGCACTCCTTAT GCGATACATCATATATGCACTTTGTTGCTATCTTAATTATGATGCGTCTTTTGCAGCGTTCTAAGTAAAAAAAA] [+] EMBL AU032867 [ TGCATTCTGGAAGTTCACAGTCGCAGGATAATGATGATGGCTCGGATGTATCCCTGAAATTAGGGCTGCCTTGTGGTGCATGGAAGTAACTGAAAGGAAAAAAAAAGCATCCTTGCAGATCTGGTTGGAGTCGTTGCGGCATCCAGGGGAGAAACGCTTGTGTTATTCCCAAACCCAGACT GCAATAATATAATCTTGCGTTGGAAGCGAGATCAGTTAACCTGATTTATCATCCTTGTGGCTGCATGATGCGATGTTCCGCTTGTACTGTTCGCTAGGATCTTGACTAAACTTTGAGATCTATGTGCCGTTTAATTATCCCATCGCTATTGGCACTCCTTAT GCGATACATCATATATGCACTTTGTTGCTATCTTAATTATGATGCGTCTTTTGCAGCGTTCTAAA ] [+] EMBL AU094941 [ CTCGGATGTATCCCTGAAATTAGGGCTGCCTTGTGGTGCATGGAAGTAACTGAAAGGAAAAAAAAAGCATCCTTGCAGATCTGGTTGGAGTCGTTGCGGCATCCAGGGGAGAAACGCTTGTGTTATTCCCAAACCCAGACT GCAATAATATAATCTTGCGTTGGAAGCGAGATCAGTTAACCTGATTTATCATCCTTGTGGCTGCATGATGCGATGTTCCGCTTGTACTGTTCGCTAGGATCTTGACTAAACTTTGAGATCTATGTGCCGTTTAATTATCCCATCGCTATTGGCACTCCTTAT GCGATACATCATATATGCACTTTGTTGCTATCTTAATTATGATGCGTCTTTTGCAGCGTTCTAAAA ] [+] EMBL AU165620 [ CGGATGTATCCCTGAAATNAGGGCTGCCTTGTGGTGCATGGAAGTAACTGAAAGGAAAAAAAAAGCATCCTTGCAGATCTGGTTGGAGTCGTTGCGGCATCCAGGGGAGAAACGCTTGTTTTATTCCCAAACCCAGACT GCAATAATATAATCTTGCGTTGGAAGCGAGATCAGTTAACCTGATTTATCATCCTTGTGGCTGCATGATGCGATGTTCCGCTTGTACTGTTCGCTAGGATCTTGACTAAACTTTGAGATCTATGTGCCGTTTAATTATCCCATCGCTATTGGCACTCCTTAT GCGATACATCATATATGCACTTTGTTGCTATCTTAATTATGATGCGTCTTTTGCAGCGTTCTAAAAA ] [+] EMBL AU093708 [ GTGGCTGCATGATGCGATGTTCCGCTTGTACTGTTCGCTAGGATCTTGACTAAACTTTGAGATCTATGTGCCGTTTAATTATCCCATCGCTATTGGCACTCCTTAT GCGATACATCATATATGCACTTTGTTGCTATCTTAATTATGATGCGTCTTTTGCAGCGTTCTA ] consensusID : consensus_15053#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 620 fasta sequence [TCGATCCGCGCGCGGCGGCGATGGCGCGGGAGAGGCGGGAGATAAAGAGGATAGAGAGCGCGGCGGCGCGGCAGGTCACCTTCTCCAAGCGCCGGCGCGGCCTGTTCAAGAAGGCCGAGGAGCTCTCCGTGCTCTGCGACGCCGACGTCGCGCTCATCGTCTTCTCCTCCACGGGGAAGCTATCCCACTTCGCAAGCTCCAGGTATGCTGTTCTACTCCCACGCCTGGATATCTCTCGACTCCGCTTCGTCTCCCGCGTTTCGATAGATCTAGCTAGGCGCGTTTCCTCCCCCGGTCTCCCTTTGACTTCGATGTCTAAGATCCATCCGCCTGGGCTAGGGTTTAACACGGGATATTTTAACTAGTAACACGGATCTCACCATTTCCACCCGTTCAGAAAAATCAATACAGTTTTAGAACGACTCGTGGTTACTTTCGCCCCCTTTAGATGTAGGGGATTTACTGTAGTGTATGTAGTCTGCACCTGTACTTTTGCAGATTATTTTCGAGGTGTTCTTTTTTTGGTGCATGAGTAGCCCATCTTATTTGGCCATTCCTACTGGAAATATCGTACGACAACTCCTGTTATTTGCTGTTTATGTGCGCGTGGAGTTAATCGA] [+] EMBL CF306783 [TCGATCCGCGCGCGGCGGCGATGGCGCGGGAGAGGCGGGAGATAAAGAGGATAGAGAGCGCGGCGGCGCGGCAGGTCACCTTCTCCAAGCGCCGGCGCGGCCTGTTCAAGAAGGCCGAGGAGCTCTCCGTGCTCTGCGACGCCGACGTCGCGCTCATCGTCTTCTCCTCCACGGGGAAGCTATCCCACTTCGCAAGCTCCAGGTATGCTGTTCTACTCCCACGCCTGGATATCTCTCGACTCCGCTTCGTCTCCCGCGTTTCGATAGATCTAGCTAGGCGCGTTTCCTCCCCCGGTCTCCCTTTGACTTCGATGTCTAAGATCCATCCGCCTGGGCTAGGGTTTAACACGGGATATTTTAACTAGTAACACGGATCTCACCATTTCCACCCGTTCAGAAAAATCAATACAGTTTTAGAACGACTCGTGGTTACTTTCGCCCCCTTTAGATGTAGGGGATTTACTGTAGTGTATGTAGTCTGCACCTGTACTTTTGCAGATTATTTTCGAGGTGTTCTTTTTTTGGTGCATGAGTAGCCCATCTTATTTGGCCATTCCTACTGGAAATATCGTACGACAACTCCTGTTATTTGCTGTTTATGTGCGCGTGGAGTTAATCGA] consensusID : consensus_15053#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 580 fasta sequence [CTCACTTTGGGCCGAATTGGGTCCCGGGCCCCCCCTCGAGNTCGACCCCACGCNTCCGGCAATTTGTTTGATACTGAAAATTTTTGTTCCCNAAGGACAGTCCTCTGAATCTGTGATGACTCCATTGCATTCTGGAAGTTCACAGTCNCAGGATAATGATGATGGCTCGGATGTACCCCCTGAAATTAGGGCTNCCTTGTGGTNCATGGAAGTAACTGAAAGGAAAAAAAAAGCATCCTTGCAGATCTGGTTGGAGNCGTTGCGGCATCCAGGGGAGAAACGCTTGTGTTATTCCCAAACCCAGACTGCAATAATATAATCTTGCGTTGGAAGCGAGATCAGTTANCCTGATTTATCACCCTTGTGGCTGCATGATGCGATGTTCCGCTTGTACTGTTCGCTAGGATCTTGACTAAACTTTGAGATCTATGTGCCGTTTAATTATCCCATCGCTATTGGCACNCCTTATGCGATACATCATATATGCACTTTGTTGCTATCTTAATTATGATGCGTCTTTTGCAGNGTTNTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU030919 [CTCACTTTGGGCCGAATTGGGTCCCGGGCCCCCCCTCGAGNTCGACCCCACGCNTCCGGCAATTTGTTTGATACTGAAAATTTTTGTTCCCNAAGGACAGTCCTCTGAATCTGTGATGACTCCATTGCATTCTGGAAGTTCACAGTCNCAGGATAATGATGATGGCTCGGATGTACCCCCTGAAATTAGGGCTNCCTTGTGGTNCATGGAAGTAACTGAAAGGAAAAAAAAAGCATCCTTGCAGATCTGGTTGGAGNCGTTGCGGCATCCAGGGGAGAAACGCTTGTGTTATTCCCAAACCCAGACTGCAATAATATAATCTTGCGTTGGAAGCGAGATCAGTTANCCTGATTTATCACCCTTGTGGCTGCATGATGCGATGTTCCGCTTGTACTGTTCGCTAGGATCTTGACTAAACTTTGAGATCTATGTGCCGTTTAATTATCCCATCGCTATTGGCACNCCTTATGCGATACATCATATATGCACTTTGTTGCTATCTTAATTATGATGCGTCTTTTGCAGNGTTNTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_15053#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 519 fasta sequence [GCAGAGGAGAACATGCAACTCAGAAACCAGGTATCCCAGATATCACCAGCTGAGAAGCAAGTTGTTGATACTGAAAATTTTGTTACCGAAGGNCAGTCCTCTGAATCTGTGATGACTGCATTGCATTCTGGAAGTTCACAGTCGCAGGATAATGATGATGGCTCGGATGTATCCCTGAAATTAGGGCTGCCTTGTGGTGCATGGAAGTAACTGAAAGGAAAAAAAAAGCATCCTTGCAGATCTGGTTGGAGTCGTTGCGGCATCCAGGGGAGAAACGCTTGTGTTATTCCCAAACCCAGACTGCAATAATATAATCTTGCGTTGGAAGCGAGATCAGTTAACCTGATTTATCATCCTTGTGGCTGCATGATGCGATGTTCCGCTTGTACTGTTCGCTAGGATCTTGACTAAACTTTGAGATCTATGTGCCGTTTAATTATCCCATCGCTATTGGCACTCCTTATGCGATACATCATATATGCACTTTGTTGCTATCTTAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU077566 [GCAGAGGAGAACATGCAACTCAGAAACCAGGTATCCCAGATATCACCAGCTGAGAAGCAAGTTGTTGATACTGAAAATTTTGTTACCGAAGGNCAGTCCTCTGAATCTGTGATGACTGCATTGCATTCTGGAAGTTCACAGTCGCAGGATAATGATGATGGCTCGGATGTATCCCTGAAATTAGGGCTGCCTTGTGGTGCATGGAAGTAACTGAAAGGAAAAAAAAAGCATCCTTGCAGATCTGGTTGGAGTCGTTGCGGCATCCAGGGGAGAAACGCTTGTGTTATTCCCAAACCCAGACTGCAATAATATAATCTTGCGTTGGAAGCGAGATCAGTTAACCTGATTTATCATCCTTGTGGCTGCATGATGCGATGTTCCGCTTGTACTGTTCGCTAGGATCTTGACTAAACTTTGAGATCTATGTGCCGTTTAATTATCCCATCGCTATTGGCACTCCTTATGCGATACATCATATATGCACTTTGTTGCTATCTTAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15053#2 ------------------------------------------------------------ consensus_15053#3 ------------------------------------------------------------ consensus_15053#0 CGCGCCGCGCCTCGCCTCGCCTCGCCTCACCTCACCTCACCTCACCCTCCGCCTCGTCTC 60 consensus_15053#1 ------------------------------------------------------------ consensus_15053#2 ------------------------------------------------------------ consensus_15053#3 ------------------------------------------------------------ consensus_15053#0 CTTCCCCCCTTTCCTCTACCCACGCACGCCCTCTCTCCCATCCCAGCCGTAGCCGCGCCG 120 consensus_15053#1 ------------------------------------------------------------ consensus_15053#2 ------------------------------------------------------------ consensus_15053#3 ------------------------------------------------------------ consensus_15053#0 TGACTTGTCTCGATCGGCGGCGAGGAGGAGGGCTTCCGTTCCCTGGCCGGTGGGGGAGGA 180 consensus_15053#1 ------------------------------------------------------------ consensus_15053#2 ------------------------------------------------------------ consensus_15053#3 ------------------------------------------------------------ consensus_15053#0 TCAGGCGGGGGGGCGGCGGGGAGGGGGAGGAGATCGGTCTCGGTCGATCCGCGCGCGGCG 240 consensus_15053#1 ------------------------------------------------------------ consensus_15053#2 ------------------------------------------------------------ consensus_15053#3 ------------------------------------------------------------ consensus_15053#0 GCGATGGCGCGGGAGAGGCGGGAGATAAAGAGGATAGAGAGCGCGGCGGCGCGGCAGGTC 300 consensus_15053#1 ------------------------------------------------------------ consensus_15053#2 ------------------------------------------------------------ consensus_15053#3 ------------------------------------------------------------ consensus_15053#0 ACCTTCTCCAAGCGCCGGCGCGGCCTGTTCAAGAAGGCCGAGGAGCTCTCCGTGCTCTGC 360 consensus_15053#1 ------------------------------------------------------------ consensus_15053#2 ------------------------------------------------------------ consensus_15053#3 ------------------------------------------------------------ consensus_15053#0 GACGCCGACGTCGCGCTCATCGTCTTCTCCTCCACGGGGAAGCTATCCCACTTCGCAAGC 420 consensus_15053#1 ------------------------------------------------------------ consensus_15053#2 ------------------------------------------------------------ consensus_15053#3 ------------------------------------------------------------ consensus_15053#0 TCCAGTATGAATGAAATCATCGACAAGTACAACACACATTCTAATAATCTGGGGAAAGCA 480 consensus_15053#1 ------------------------------------------------------------ consensus_15053#2 ------------------------------------------------------------ consensus_15053#3 ------------------------------------------------------------ consensus_15053#0 GAACAGCCTTCGCTCGACTTGAATTTAGAACATAGCAAGTATGCACATTTGAATGAGCAA 540 consensus_15053#1 ------------------------------------------------------------ consensus_15053#2 ------------------------------------------------------------ consensus_15053#3 ------------------------------------------------------------ consensus_15053#0 CTTGCGGAAGCTAGTCTCCGGCTTAGACAAATGAGAGGTGAGGAGCTTGAGGGATTGAGC 600 consensus_15053#1 ------------------------------------------------------------ consensus_15053#2 ------------------------------------------------------------ consensus_15053#3 ------------------------------------------------------------ consensus_15053#0 ATTGATGAACTCCAGCAGCTAGAGAAGAACCTGGAAGCTGGTCTGCACAGGGTGATGCTG 660 consensus_15053#1 ------------------------------------------------------------ consensus_15053#2 ---------------------------------------------------------CTC 3 consensus_15053#3 ------------------------------------------------------------ consensus_15053#0 ACAAAGGATCAACAATTTATGGAGCAGATCAGTGAACTCCAGCGGAAGAGTTCACAGCTG 720 consensus_15053#1 -------------------------------------------TCGATCCGCGCGCGGCG 17 consensus_15053#2 ACTTTGGGCCGAATTGGGTCCCGGGCCCCC-CC-TCGAGNTCGACCCCACGCNTCCGGCA 61 consensus_15053#3 GCAGAGGAGAACATGCAACTCAGAAACCAG-GTATCCCAGATATCACCAGCTGAGAAGCA 59 consensus_15053#0 GCAGAGGAGAACATGCAACTCAGAAACCAG-GTATCCCAGATATCACCAGCTGAGAAGCA 779 consensus_15053#1 GCGATGGCGCGGGAGAGGCGGGAGATAAAGAGGATAGAGAGCGCGGCGGCGCGGCAGGTC 77 * ** * * * consensus_15053#2 ATTTGTTT--GATACTGAAAATTTTTGTTCCCNAAGGAC----AGTCCTCTGAA-TCTGT 114 consensus_15053#3 AGTTGTT---GATACTGAAAATTTT-GTTACCGAAGGNC----AGTCCTCTGAA-TCTGT 110 consensus_15053#0 AGTTGTT---GATACTGAAAATTTT-GTTACCGAAGGAC----AGTCCTCTGAA-TCTGT 830 consensus_15053#1 ACCTTCTCCAAGCGCCGGCGCGGCCTGTTCAAGAAGGCCGAGGAGCTCTCCGTGCTCTGC 137 * * * * * *** **** * ** *** * **** consensus_15053#2 GATGACTCCATTGCATTCTGGAAGTTCACAGTCNCAGGATAATGATGATGGCTCGGATGT 174 consensus_15053#3 GATGACTGCATTGCATTCTGGAAGTTCACAGTCGCAGGATAATGATGATGGCTCGGATGT 170 consensus_15053#0 GATGACTGCATTGCATTCTGGAAGTTCACAGTCGCAGGATAATGATGATGGCTCGGATGT 890 consensus_15053#1 GACGCCGACGTCGCGCTCATCGTCTTCTCCTCCACGGGGAAGCTATCCCACTTCGCAAGC 197 ** * * * * ** ** *** * * * ** * ** *** * * consensus_15053#2 ACCCCCTGAAATTAGGGCTNCCTTGTGGTNCATGGAAGTAACTGAAAGGAAAAAAAAA-- 232 consensus_15053#3 ATCCC-TGAAATTAGGGCTGCCTTGTGGTGCATGGAAGTAACTGAAAGGAAAAAAAAA-- 227 consensus_15053#0 ATCCC-TGAAATTAGGGCTGCCTTGTGGTGCATGGAAGTAACTGAAAGGAAAAAAAAA-- 947 consensus_15053#1 TCC----AGGTATGCTGTTCTACTCCCACGCCTGGATATCTCTCGACTCCGCTTCGTCTC 253 * * * * * * **** * ** * consensus_15053#2 --GCATCCTTGCAGATCTGGTTGGAGNCGTTGCGGCATCCAGGGGAGAAACGCTTGTGTT 290 consensus_15053#3 --GCATCCTTGCAGATCTGGTTGGAGTCGTTGCGGCATCCAGGGGAGAAACGCTTGTGTT 285 consensus_15053#0 --GCATCCTTGCAGATCTGGTTGGAGTCGTTGCGGCATCCAGGGGAGAAACGCTTGTGTT 1005 consensus_15053#1 CCGCGTTTCGATAGATCTAGCTAGGCGCGTTTCCTCCCCCGGTCTCCCTTTGACTTCGAT 313 ** * ****** * * * **** * * ** * * * * * consensus_15053#2 ATTCCCAAACCCAGACTGCAATAATATAATCTTGCGTTGGA-AGCGAGATCAGTTANCCT 349 consensus_15053#3 ATTCCCAAACCCAGACTGCAATAATATAATCTTGCGTTGGA-AGCGAGATCAGTTAACCT 344 consensus_15053#0 ATTCCCAAACCCAGACTGCAATAATATAATCTTGCGTTGGA-AGCGAGATCAGTTAACCT 1064 consensus_15053#1 GT-CTAAGATCCATCCGCCTGGGCTAGGGTTTAACACGGGATATTTTAACTAGTAACACG 372 * * * * *** * * ** * * * *** * * *** * * consensus_15053#2 GATTT-ATCACCCTTGTGGCTGCATGATG--CGATGTTCCGCTTGTACTGTTCGCTAGGA 406 consensus_15053#3 GATTT-ATCATCCTTGTGGCTGCATGATG--CGATGTTCCGCTTGTACTGTTCGCTAGGA 401 consensus_15053#0 GATTT-ATCATCCTTGTGGCTGCATGATG--CGATGTTCCGCTTGTACTGTTCGCTAGGA 1121 consensus_15053#1 GATCTCACCATTTCCACCCGTTCAGAAAAATCAATACAGTTTTAGAACGACTCGTGGTTA 432 *** * * ** * ** * * ** * * ** *** * consensus_15053#2 TCTTGACTAAACTTTGAGATCTATGTGCCGTTTAATTATCC-CATCGCTATTGGCACNCC 465 consensus_15053#3 TCTTGACTAAACTTTGAGATCTATGTGCCGTTTAATTATCC-CATCGCTATTGGCACTCC 460 consensus_15053#0 TCTTGACTAAACTTTGAGATCTATGTGCCGTTTAATTATCC-CATCGCTATTGGCACTCC 1180 consensus_15053#1 CTTTCGCCC--CCTTTAGATGTAGGGGATTTACTGTAGTGTATGTAGTCTGCACCTGTAC 490 ** * * ** **** ** * * * * * * * * * consensus_15053#2 TTATGCGATACATCATATATGCACTTTGTTGCTATCTTAATTATGATGCGTCTTTTGCAG 525 consensus_15053#3 TTATGCGATACATCATATATGCACTTTGTTGCTATCTTAA-------------------- 500 consensus_15053#0 TTATGCGATACATCATATATGCACTTTGTTGCTATCTTAATTATGATGCGTCTTTTGCAG 1240 consensus_15053#1 TTTTGCAGATTATTTTCGAGGTGTTCTTTTTTTGGTGCATGAGTAGCCCATCTTATTTGG 550 ** *** ** * * * * * ** * * consensus_15053#2 NGTTNTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA----- 580 consensus_15053#3 -------AAAAAAAAAAAAAAAAAAA---------------------------------- 519 consensus_15053#0 CGTTCTAAAAAAAAAAAA------------------------------------------ 1258 consensus_15053#1 CCATTCCTACTGGAAATATCGTACGACAACTCCTGTTATTTGCTGTTTATGTGCGCGTGG 610 * *** * consensus_15053#2 ---------- consensus_15053#3 ---------- consensus_15053#0 ---------- consensus_15053#1 AGTTAATCGA 620 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||