These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15136#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 16 consensus length = 1343 fasta sequence [AGTCTTTCGACTCGCCGAGTACGCGACCCGCGAGCCAAACCCTACCTTCCTCCGCGCGACCTCGATCCCCCCACCCCCACCCCTCGGCGGCGATGAGCTCCTCCAACAACGGCGGTGGCGGCGACAAGAAGCCGGCGTCCGGCGGCCGCTGGGGCCCCACCATCCGCACCCTCGCGGACATCAGCCGCGGCCCGTCCGGCTTCCCTGGGGGCGGCGGCGGCGGCGGCAGCGACTCCGACGAGCCCCAGGAGTACTACACCGGCGGCGAGAAGAGTGGGATGCTTGTTCAGGACCCAACAAGAAGAAACACTGTGGACTCAATCTTCGAACAAGCTAGACAGATGGGTGCTCTCCAAGA-TCAACCGCCTCCATTTGAGGATCAATCTTCCAGTTCAAGA-AGCTTTAC-AGGGACTGGTCGACTTCTTTCAGGAGAGACAGCACCAGCTGCACCTCCACCGCCTGGGAATGTACTTCACAATATACAATTCT-GGAACAA-TGGATTCACTGTAGATGATGGTCCGCTGAGGGACTATGATGATCCTGCAAATGCTGATTTCATTGAGAGCATCAAGAAGTCCCAGTGCCCCCAGG-AGTTGGAGCCAGCTGAT-AGAAGAACACCTGTTCATGTGAA-TGTTATCAAACGACT-GGAAGAC-TAT---CA-GG-CTCCTCTAAGGCCTCCATCACCCTTCCAGGGTGTTGGAAGAACCCTTGGTGGTGGATCTTCTGCAGAAGAGAG-CCAGGCACCAGCTCCTGCCACTCAAGAACCCCGCAGGTCCGTTGGAATAGTTGTGGACGACTCGCTCCCAT-TTACATCCATACAGCTAAGGCTGGCCGATGGCACTCGCATGGTTGCCCGTTTCAACATGCACCACACGGTGGGCGACATCAGGTCTTTCATCGACGCCTCTCGGCCTGGGGCTACAAGGCCCTATCAGCTGCAGACTGGTTTCCCGCCGAAGCAGCTGGCTGATCCAGCACAGACCGTCGAGCAAGCTGGTCTGGCGAACTCTGTCATCATTCAGAAGATGTAGGCCTAGGGGCACGTCTCATATGCTATCTTTGAAACAA-GAACCCGGTG-TCCTTAAATTGTCGATTATCATGCCAGATAC-TGTACT-GGAATACATTCT-GCATCGAACCAGACTGCTGGTTTCATCGACAGACAGACGATAACAATAGCCATGTCGGTTTTTAAGTGGCATCAGTGAAGTTCATAATCCTA-TTAATAGTAATTACCTGAATTGCAACAAAAAGTCGTGCCTCAATTTGATCCTGACTAATTGTTGCTTGAAAAGCTGTTAACTGTTCATCGAGATATATCATCAAATCATTCGTGTTCATTTCAAAAA] [+] EMBL AK069067 [ GTCTTTCGACTCGCCGAGTACGCGACCCGCGAGCCAAACCCTACCTTCCTCCGCGCGACCTCGATCCCCCCACCCCCACCCCTCGGCGGCGATGAGCTCCTCCAACAACGGCGGTGGCGGCGACAAGAAGCCGGCGTCCGGCGGCCGCTGGGGCCCCACCATCCGCACCCTCGCGGACATCAGCCGCTGCCCGTCCGGCTTCCCTGGGGGCGGCGGCGGCGGCGGCAGCGACTCCGACGAGCCCCAGGAGTACTACACCGGCGGCGAGAAGAGTGGGATGCTTGTTCAGGACCCAACAAGAAGAAACACTGTGGACTCAATCTTCGATCAAGCTAGACAGATGGGTGCTCTCCAAGAGTCAACCG CTCCATTTGAGGATCAATCTCTCAGTTCAAGA AGCTTTAC AGGGACTGGTCGACTTCTTTCAGGAGAGACAGCACCAGCTGCACCTCCACCGCCTGGGAATGTACTTCACAATATACCATTCT GGAACAA TGGATTCACTGTAGATGATGGTCCGCTGAGGGACTATGATGATCCTGCAAATGCTGATTTCATTGAGAGCATCAAGAAGTCCCAGTGCCCCCAGG AGTTGGAGCCAGCTGAT AGAAGAACACCTGTTCATGTGAA TGTTATC AACGACTAGGAAGAC TAT CA GG CTCCTCTAAGGCCTCCATCACCCTTCCAGGGTGTTGGAAGAACCCTTGGTGGTGGATCTTCTGCAGAAGAGAG CCAGGCACCAGCTCCTGCCACTCAAGAACCCCGCAGGTCCGTTGGAATAGTTGTGGACGACTCGCTCCCAT TTACATCCATACAGCTAAGGCTGGCCGATGGCACTCGCATGGTTGCCCGTATCAACATGCACCACACGGTGGGCGACATAAGGTCTTTCATCGACGCCTCTCGGCCTGGGGCTACAAGGCCCTATCAGCTGCAGACTGGTTTCCCGCCGAAGCAGCTGGCTGATCCAGCACAGACCGTCGAGCAAGCTGGTCTGGCGAACTCTGTCATCATTCAGAAGATGTAGACCTAGGAGCACGTCTCATATGCTATCTTTGAAACAA GAACCCGGTG TCCTTAAATTGTCGATTATCATGCCAGATAC TGTACT GGAATACATTCT GCATCGAACCAGACTGCTGGTTTCATCGACAGACAGACGATAACAATAGCCATGTCGGTTTTTAAGTGGCATCAGTGAAGTTCATAATCCTA TTAATAGTAATTACCTGAATTGCAACAAACTGTCGTGCCTCAATTTGATCCTGACTAATTGTTGCTTGAAAAGCTGTTAACTGTTCATCGAGATATATCATCAAATCATTCGTGTTCA ] [+] EMBL CB658950 [agctcgTCGACTCGCCGAGTACGCGACCCGCGAGCCAAACCCTACCTTCCACCCCGCGACCTCGATCCCCCCACCCCCACCCCTCGGCGGCGATGAGCTCCTCCAACAACGGCGGTGGCGGCGACAAGAAGCCGGCGTCCGGCGGCCGCGGGGGCCCCACCATCCGCACCCTCGCGGACATCAGCCGCGGCCCGTCCGGCTTCCCTGGGGGCGGCGGCGGCGGCGGCAGCGACTCCGACGAGCCCCAGGAGTACTACACCGGCGGCGAGAAGAGTGGGATGCTTGTTCAGGACCCAACAAGAAGAAACACTGTGGACTCAATCTTCGAACAAGCTAGACAGATGGGTGCTCTCCAAGA TCAACCGCCTCCATTTGAGGATCAATCTTCCAGTTCAAGA AGCTTTAC AGGGACTGGTCGACTTCTTTCAGGAGAGACAGCACCAGCTGCACCTCCACCGCCTGGGAATGTACTTCACAATATACAATTCT GGAACAA TGGATTCACTGTAGATGATGGTCCGCTGAGGGACTATGATGATCCTGCAAATGCTGATTTCATTGAGAGCATCAAGAAGTCCCAGTGCCCCCAGG AGTTGGAGCCAGCTGAT AGAAGAACACCTGTTCATGTGAA TGTTATCAAACGACT GGAAGAC TAT CA GG CTCCTCTAAGGCCTCCATCACCCTTCCAGGGTGTTGGAAGAACCCTTGGTGGTGGATCTTCTGCAGAAGAGAG CCAGGCACCAGC ] [+] EMBL CB965946 [ CCACCATCCGCACCCTCGCGGACATCAGCCGCGGCCCGTCCGGCTTCCCTGGGGGCGGCGGCGGCGGCGGCAGCGACTCCGACGAGCCCCAGGAGTACTACACCGGCGGCGAGAAGAGTGGGATGCTTGTTCAGGACCCAACAAGAAGAAACACTGTGGACTCAATCTTCGAACAAGCTAGACAGATGGGTGCTCTCCAAGA TCAACCGCCTCCATTTGAGGATCAATCTTCCAGTTCAAGA AGCTTTAC TGGGACTGGTCGACTTCTTTCAGGAGAGACAGCACCAGCTGCACCTCCACCGCCTGGGAATGTACTTCACAATATACAATTCT GGAACAA TGGATTCACTGTAGATGATGGTCCGCTGAGGGACTATGATGATCCTGCAAATGCTGATTTCATTGAGAGCATCAAGAAGTCCCAGTGCCCCCAGG AGTTGGAGCCTTCTGAT AGAAGAACACCTGTTCATGTGAA TGTTATCAAACGACT GGAAGAC TAT CA GG CTCCTCTAAGGCCTCCATCACCCTTCCAGGGTGTTGGAAGAACCCTTGGTGGTGGATCTTCTGCAGACGAGAG CCAGGCAACAGCTCCTGACACTCAAGCAACCCGCAGGTCCGTAGGAATAGTTGTGGACGACTCGCTCCCAT TAACA ] [-] EMBL BI810741 [ CCACCATCCGCACCCTCGCGGACATCAGCCGCGGCCCGTCCGGCTTCCCTGGGGGCGGCGGCGGCGGCGGCAGCGACTCCGACGAGCCCCAGGAGTACTACACCGGCGGCGAGAAGAGTGGGATGCTTGTTCAGGACCCAACAAGAAGAAACACTGTGGACTCAATCTTCGAACAAGCTAGACAGATGGGTGCTCTCCAAGA TCAACCGCCTCCATTTGAGGATCAATCTTCCAGTTCAAGA AGCTTTAC AGGGACTGGTCGACTTCTTTCAGGAGAGACAGCACCAGCTGCACCTCCACCGCCTGGGAATGTACTTCACAATATACAATTCT GGAACAAGTGGATTCACTGTAGATGATGGTCCGCTGAGGGACTATGATGATCCTGCAAATGCTGATTTCATTGAGAGCATCAAGAAGTCCCAGTGTCCCCAGG AGTTGGAGCCAGCTGAT AGAAGAACACCTGTTCATGTGAACTGTTATCAAACGACT GG AGACTTATTCACAGGG CTCC ] [+] EMBL AU094836 [ ACCATCCGCACCCTCGCGGACATCAGCCGCGGCCCGTCCGGCTTCCCTGGGGGCGGCGGCGGCGGCGGCAGCGACTCCGACGAGCCCCAGGAGTACTACACCGGCGGCGAGAAGAGTGGGATGCTTGTTCAGGACCCAACAAGAAGAAACACTGTGGACTCAATCTTCGAACAAGCTAGACAGATGGGTGCTCTCCAAGA TCAACCGCCTCCATTTGAGGATCAATCTTCCAGTTCAAGA AGCTTTAC AGGGACTGGTCGACTTCTTTCAAGAGAGACAGCACCAGCTGCACCTCCACCGCCTNGGAATGTACTTCACAATATACAATTCTGGGAACAA TGGATTCACTGTANATGATGGTCCGCTGAGGGACTATGATGATCCTGCAAATGCTGATTTCATTGAGAGCATCAAGAAGTCCCAATGCCCCCAGGNAGTTGGAGCCAGCTGATNAGAAGAACACCTGTTCATGTGAA TGTTATCAAACGACTGGGAAGAC T ] [+] EMBL BP184669 [ TCAGCCGCGGCCCGTCCGGCTTCCCTGGGGGCGGCGGCGGCGGCGGCAGCGACTCCGACGAGCCCCAGGAGTACTACACCGGCGGCGAGAAGAGTGGGATGCTTGTTCAGGACCCAACAAGAAGAAACACTGTGGACTCAATCTTCGAACAAGCTAGACAGATGGGTGCTCTCCAAGA TCAACCGCCTCCATTTGAGGATCAATCTTCCAGTTCAAGA AGCTTTAC AGGGACTGGTCGACTTCTTTCAGGAGAGACAGCACCAGCTGCACCTCCACCGCCTGGGAATGTACTTCACAATATACAATTCT GGAACAA TGGATTCACTGTAGATGATGGTCCGCTGAGGGACTATGATGATCCTGCAAATGCTGATTTCATTGAGAGCATCAAGAAGTCCCAGTGCCCCCAGG AGTTGGAGCCAGCTGAT AGAAGAACACCTGTTCATGTGAA TGTTATCAAACGACT GGAAGAC TAT CA GG CTCCTCTAAGGCCTCCATCACCCTTCCAGGGTGTTGGAAGAACCCTTGGTGGTGGATCTTCTGCAGAAGAGAG CCAGGCACCAGCTC ] [+] EMBL CA765234 [ TCTTCGAACAAGCTAGACAGATGGGTGCTCTCCAAGA TC ACCGCCTCCATTTGAGGATCAATCTTCCAGTTCAAGA AGCTTTAC AGGGACTGGTCGACTTCTTTCAGGAGAGACAGCACCAGCTGCACCTCCACCGCCTGGGAATGTGCTTCACAATATACAATTCT GGAACAA TGGATTCACTGTAGATGATGGTCCGCTGAGGGACTATGATGATCCTGCAAATGCTGATTTCATTGAGAGCATCAAGAAGTCCCAGTGTCCCCAGG AGTTGGAGCCAGCCGAT AGAAGAACACCTGTTCATGTGAA TGTTATCAAACGACT GGAAGAC TAT CA GG CTCCTCTAGGGCCTCCATCACCCTTCCAGGGTGTTGGAAGAACCCTTGGTGGTGGATCTTCTGCAGAAGAGAG CCAGGCACCAGCTCCTGCCACTCAAGAACCCCGCAGGTCCGTTGGAATAGTTGTGGACGACTCGCTCCCAT TTACATCCATACAGCTAAGGCTGGTCGATGGCACTCGCATGGTTGCCCGTTTCAACATGCACCACACGGTGGGCGACATCAGGTCTTTCATCGACGCCTCTCGGCCTGGGGCTACAAGGCCCTATCAGCTGCAGACTGGTTTCCCGCCGAAGCAGCTGGCTGATCCAGCACAGACCGTCGAGCAAGCTGGTCTGGCGAACTCTGTCATCATTCAGAAGATGTAGGCCTAGGGGCACGTCTCATATGCTATCTTTGAAACAA GAACCCGGTG TCCTTAAATTGT ] [+] EMBL AA754252 [ cgagTCCATTTGAGGATCAATCTTCCAGTTCAAGARAGCTTTACTAGGGACTGGTCGACTTCTTTCAGGAGAGACAGCACCAGCTGCACCTCCACCGCCTGGGAATGTACTTCACAATATACAATTCT GGAACAA TGGATTCACTGTAGATGATGGTCCGATGAGGGACTATGATGATCCTGCAAATGCTGATTTCATTGAGAGCATCAAGVAGTCCCAGTGCCCCCAGG AGTTGGAGCCTTCTGAT AGAAGAACACC GTTCATGTGAR TGTTATCAAASGACT GGRAGAC TAT CA GGASTCCTCTAAGGCCTCCATCACCCTTCCAGGGTGTTGGAAGAACCCTTRGTGGTGGATCTTCTGCAGAAGAGAG CCAGGCACCAGCTCCTGCCACTCAAGAAC ] [+] EMBL CB683880 [ ATTGAGAGCATCAAGAAGTCCCAGTGCCCCCAGG AGTTGGAGCCAGCTGAT AGAAGAACACCTGTTCATGTGAA TGTTATCAAACGACT GGAAGAC TAT CA GG CTCCTCTAAGGCCTCCATCACCCTTCCAGGGTGTTGGAAGAACCCTTGGTGGTGGATCTTCTGCAGAAGAGAG CCAGGCACCAGCTCCTGCCACTCAAGAACCCCGCAGGTCCGTTGGAATAGTTGTGGACGACTCGCTCCCAT TTACATCCATACAGCTAAGGCTGGCCGATGGCACTCGCATGGTTGCCCGTTTCAACATGCACCACACGGTGGGCGACATCAAGTCTTTCATCGACGCCTCTCGGCCTGGGGCTACAAGGCCCTATCAGCTGCAGACTGGTTTCCCGCCGAAGCAGCTGGCTGATCCAGCACAGACCGTCGAGCAAGCTGGTCTGGCGAACTCTGTCATCATTCAGAAGATGTAGGCCTAAGGGCACGTCTCATATGCTATCTTTGAAACAA GAACCCGGTG TCCTTAAATTGTCGATTATCATGCCAGATAC TGTACT GGAATACATTCT GCATCGAACCAGACTGCTGGTTTCATCGACAGACAGACGATAACAATAGCCATGTCGGTTTTTAAGTGGCATCAGTGAAGTTCATAATCCTA TTAATAGTAATTACCTGAATTGCAACAAACTGTCGTGCCTCAATTTGATCCTGACTAATTGTTGCTTGAAAAGCTGTTAACTGTTCATCGA ] [+] EMBL BI798385 [ CCTCCATCA CCTTCCCAGGTTTTGGAAGAACCCCTTGT GTGGATCTTCTCCAGAAGAGAGCCCAGGCACCAGCTCCTGCCACTCAAGAACCCCGCAGGTCCGTTGGAATAGTTGTGGACGACTCGCTCCCATGTTACATCCATACAGCTAAGGCTGGCCGATGGCACTCGCATGGTTGCCCGTTTCAACATGCACCACACGGTGGGCGACATCAGGTCTTTCATCGACGCCTCTCGGCCTGGGGCTACAAGGCCCTATCAGCTGCAGACTGGTTTCCCGCCGAAGCAGCTGGCTGATCCAGCACAGACCGTCGAGCAAGCTGGTCTGGCGAACTCTGTCATCATTCAGAAGATGTAGGCCTAGGGGCACGTCTCATATGCTATCTTTGAAACAA GAACCCGGTGCTCCTTAAATTGTCGATTATCATGCCAGATAC TGTACT GGAATACATTCT GCATCGAACCAGACTGCTGGTTTCATCGACAGACAGACGATAACGATAGCCATGTCGGTTTTTAAGTGGCATCAGTGAAGTTCATAATCCTA CTAATAGTAATTACCTGAATTGC ACAAAAAa ] [+] EMBL BI798682 [ CCTTCCAGGGT TTGGAAG ACCCTT GT GT GATCTTCTCCAGAAGAGA CCAGGCACCAGCTCCTGCCACTCAAGAACCCCGCAGGTCCGTTGGAATAGTTGTGGACGACTCGCTCCCAT TTACATCCATACAGCTAAGGCT GCCGATGGCACTCGCATGGTTGCCCGTTTCAACATGCACCACACGGTGGGCGACATCAGGTCTTTCATCGACGCCTCTCGGCCTGGGGCTACAAGGCCCTATCAGCTGCAGACTGGTTTCCCGCCGAAGCAGCTGGCTGATCCAGCACAGACCGTCGAGCAAGCTGGTCTGGCGAACTCTGTCATCATTCAGAAGATGTAGGCCTAGGGGCACGTCTCATATGCTATCTTTGAAACAA GAACCCGGTG TCCTTAAATTGTCGATTATCATGCCAGATAC TGTACT GGAATACATTCT GCATCGAACCAGACTGCTGGTTTCATCGACAGACAGACGATAACGATAGCCATGTCGGTTTTTAAGTGGCATCAGTGAAGTTCATAATCCTA CTAATAGTAATTACCTGAATTGCAAAAAAAA ] [+] EMBL BI798959 [ GCTCCTGCCACTCAAGAACCCCGCAGGTCCGTTGGAATAGTTGTGGACGACTCGCTCCCAT TTACATCCATACAGCTAA GCT GCCGATGGCACTCGCATGGTTGCCCGTTTCAACATGCACCACACGGTGGGCGACATCAGGTCTTTCATCGACGCCTCTCGGCCTGGGGCTACAAGGCCCTATCAGCTGCAGACTGGTTTCCCGCCGAAGCAGCTGGCTGATCCAGCACAGACCGTCGAGCAAGCTGGTCTGGCGAACTCTGTCATCATTCAGAAGATGTAGGCCTAGGGGCACGTCTCATATGCTATCTTTGAAACAA GAACCCGGTG TCCTTAAATTGTCGATTATCATGCCAGATAC TGTACT GGAATACATTCT GCATCGAACCAGACTGCTGGTTTCATCGACAGACAGACGATAACGATAGCCATGTCGGTTTTTAAGTGGCATCAGTGAAGTTCATAATCCTACTTAATAGTAATTACCTGAATTGCAAAAAAAA ] [+] EMBL AU094488 [ CCTGCCACTCAAGAACCCCGCAGGTCCGTTGGAATAGTTGTGGACGACTCGCTCCCAT TTACATCCATACAGCTAAGGCTGGCCGATGGCACTCGCATGGTTGCCCGTTTCAACATGCACCACACGGTGGGCGACATCAGGTCTTTCATCGACGCCTCTCGGCCTGGGGCTACAAGGCCCTATCAGCTGCAGACTGGTTTCCCGCCGAAGCAGCTGGCTGATCCAGCACAGACCGTCGAGCAAGCTGGTCTGGCGAACTCTGTCATCATTCAGAAGATGTAGGCCTAGGGGCACGTCTCATATGCTATCTTTGAAACAA GAACCCGGTG TCCTTAAATTGTCGATTATCATGCCAGATAC TGTACT GGAATACATTCT GCATCGAACCAGACTGCTGGTTTCATCGACAGACAGACGATAACAATAGCCATGTCGGTTTTTAAGTGGCATCAGTGAAGTTCATAATCCTA TTAATAGTAATTACCTGAATTGCAACAAACTGTCGTGCCTCAATTTGATCCTGACTAATTGTTGCTTGAAAAGCTGTTAACTGTTCATCGAGATATATCATCAAATCATTCGTGTTCATTTCAAAAA] [+] EMBL OSC976 [ CTGCCACTCAAGAACCCCGCA GTCCGTTGGAATAGTTGTGGACGACTCGCTCCCAT TTACATCCATACAGCTAAGGCTGGCCGATGGCACTCGCATGGTTGCCCGTTTCAACATGCACCACACGGTGGGCGACATCAGGTCTTTCATCGACGCCTCTCGGCCTGGGGCTACAAGGCCCTATCAGCTGCAGACTGGTTTCCCGCCGAAGCAGCTGGCTGATCCAGCACAGACCGTCGAGCAAGCTGGTCTGGCGAACTCTGTCATCATTCAGAAGATGTAGGCCTAGGGGCACGTCTCATATGCTATCTTTGAAACAAGGAACCCGGTG TCCTTAAATTGTCGATTATCATGCCAGATACTTGTACTGGGAATACATTCTGGAATCGAACCAGACTnc ] [-] EMBL CA923277 [ TTGTGGACGACTCGCTCCCAT TTACATCCATACAGCTAAGGCTGGCCGATGGCACTCGCATGGTTGCCCGTTTCAACATGCACCACACGGTGGGCGACATCAGGCCTTTCATCGACGCCTCTCGGCCTGGGGCTACAAGGCCCTATCAGCTGCAGACTGGTTTCCCGCCGAAGCAGCTGGCTGATCCAGCACAGACCGTCGAGCAAGCTGGTCTGGCGAACTCTGTCATCATTCAGAAGATGTAGGCCTAGGGGCACGTCTCATATGCTATCCTTGAAACAA GAACCCGGTG TCCTTAAATTGTCGATTATCATGCC ] [+] EMBL AU029794 [ catTTCAGAAGATNTAGGCCTAGGGGCACGTCTCATATGCTATCTTTGAAACAA GAACCCGGTG TCCTTAAATTGTCGATTATCATGCCAGATAC TGTACT GGAATACATTCT GCATCGAACCAGACTGCTGGTTTCATCGACAGACAGACGATAACAATAGCCATGTCGGTTTTTAAGTGGCATCAGTGAAGTTCATAATCCTA TTAATAGTAATTACCTGAATTGCAACAAAAAaaa ] consensusID : consensus_15136#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 888 fasta sequence [CTCGCCGAGTACGCGACCCGCGAGCCAAACCCTACCTTCCACCCCGCGACCTCGATCCCCCCACCCCCACCCCTCGGCGGCGATGAGCTCCTCCAACAACGGCGGTGGCGGCGACAAGAAGCCGGCGTCCGGCGGCCGCGGGGGCCCCACCATCCGCACCCTCGCGGACATCAGCCGCGGCCCGTCCGGCTTCCCTGGGGGCGGCGGCGGCGGCGGCAGCGACTCCGACGAGCCCCAGGAGTACTACACCGGCGGCGAGAAGAGTGGGATGCTTGTTCAGGACCCAACAAGAAGAAACACTGTGGACTCAATCTTCGAACAAGCTAGACAGATGGGTGCTCTCCAAGATCAACCGCCTCCATTTGAGGATCAATCTTCCAGTTCAAGAAGCTNTACAGGGACTGGTCGACTTCTTTCAGGAGAGACAGCACCAGCTGCACCTCCACCGCCTGGGAATGTACTTACAATATACAATTCTGGAACANTGGATTCACTGGAGATGATGGTCCGCTGAGGGACTATGATGATCCTGCNATTGCTTGATTCATTGAGAGCCATCAGAAGTCCAGTGCCCCCAGAGTTGACCCAGCTGATNGAGAACACCGGTCATGTGATGTATCNACGACTGANGACTATAGCTCTTTAGGCCTCATACTTTCAGGTGTGAAGACCTNNGTGGACTCTGAAAGAAGCAGACAGTCTGCTTAGAACCCGAGCCGTGGATATTGCCATGGTCATACTCATAGTAGGTGCAGGCCTCAGTGCCTGACTCCCAGCGCCACCGGGGATGCTTTCCGGTCGGGGGGTAGCATTGTAAGTGCCCAAAGAGAACTCGAACTGATTGGTGGGTGTTGATAAAGAGGGCCGTTAAACGTTGTATCGATTTCG] [+] EMBL AW155202 [CTCGCCGAGTACGCGACCCGCGAGCCAAACCCTACCTTCCACCCCGCGACCTCGATCCCCCCACCCCCACCCCTCGGCGGCGATGAGCTCCTCCAACAACGGCGGTGGCGGCGACAAGAAGCCGGCGTCCGGCGGCCGCGGGGGCCCCACCATCCGCACCCTCGCGGACATCAGCCGCGGCCCGTCCGGCTTCCCTGGGGGCGGCGGCGGCGGCGGCAGCGACTCCGACGAGCCCCAGGAGTACTACACCGGCGGCGAGAAGAGTGGGATGCTTGTTCAGGACCCAACAAGAAGAAACACTGTGGACTCAATCTTCGAACAAGCTAGACAGATGGGTGCTCTCCAAGATCAACCGCCTCCATTTGAGGATCAATCTTCCAGTTCAAGAAGCTNTACAGGGACTGGTCGACTTCTTTCAGGAGAGACAGCACCAGCTGCACCTCCACCGCCTGGGAATGTACTTACAATATACAATTCTGGAACANTGGATTCACTGGAGATGATGGTCCGCTGAGGGACTATGATGATCCTGCNATTGCTTGATTCATTGAGAGCCATCAGAAGTCCAGTGCCCCCAGAGTTGACCCAGCTGATNGAGAACACCGGTCATGTGATGTATCNACGACTGANGACTATAGCTCTTTAGGCCTCATACTTTCAGGTGTGAAGACCTNNGTGGACTCTGAAAGAAGCAGACAGTCTGCTTAGAACCCGAGCCGTGGATATTGCCATGGTCATACTCATAGTAGGTGCAGGCCTCAGTGCCTGACTCCCAGCGCCACCGGGGATGCTTTCCGGTCGGGGGGTAGCATTGTAAGTGCCCAAAGAGAACTCGAACTGATTGGTGGGTGTTGATAAAGAGGGCCGTTAAACGTTGTATCGATTTCG] consensusID : consensus_15136#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 643 fasta sequence [GTTTGGAAGAACCCTTGGTGTGGATCTTCTGCAGAAGAGACCCCATGCACCAGCTCCTTCGCCAACTCAAGAACCCCGCAGGTCCCGTTGGGAATATTTGTGGACAGACTCGCTCACCATGTGACATCACATACAGCTAAGGCTGCCACGATGACACTCAGCATGGTTGCCCGTTTCAAACAATGCAACCACACAGGTGGCAGACAATCAAGGTGCTTTCAATCAGACCGCCTCTCAGGCACTGGGGCTACAAGCCCTGATCAAGCTCGCAAGACTGGGTTTGCCCGCCAGAAGCAGCTGGGCTGGATGCCAAGCACAAGACCGTGCGAGCAAGCTGTTCTGGCGAACTCTGTCATCATTCAGAAGATGTAGCCTAGGGCGCACGTCTCATATGGCTATCTTTGGAAACAAGAACCCGGTGTCCTTAAATTGGTCGATTATCATCCAGATACTGGTACTGGAATACATTCTGGCATGCGAACCAGACTGCTGGTTTCATCGACAGACAGACGATAACGATA-CCATGTCGGTTTTTAAGTGGCATCAGTGAAGTTCATAATCCTATTAATAGTAATTACCTGAATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL BI798680 [GTTTGGAAGAACCCTTGGTGTGGATCTTCTGCAGAAGAGACCCCATGCACCAGCTCCTTCGCCAACTCAAGAACCCCGCAGGTCCCGTTGGGAATATTTGTGGACAGACTCGCTCACCATGTGACATCACATACAGCTAAGGCTGCCACGATGACACTCAGCATGGTTGCCCGTTTCAAACAATGCAACCACACAGGTGGCAGACAATCAAGGTGCTTTCAATCAGACCGCCTCTCAGGCACTGGGGCTACAAGCCCTGATCAAGCTCGCAAGACTGGGTTTGCCCGCCAGAAGCAGCTGGGCTGGATGCCAAGCACAAGACCGTGCGAGCAAGCTGTTCTGGCGAACTCTGTCATCATTCAGAAGATGTAGCCTAGGGCGCACGTCTCATATGGCTATCTTTGGAAACAAGAACCCGGTGTCCTTAAATTGGTCGATTATCATCCAGATACTGGTACTGGAATACATTCTGGCATGCGAACCAGACTGCTGGTTTCATCGACAGACAGACGATAACGATA CCATGTCGGTTTTTAAGTGGCATCAGTGAAGTTCATAATCCTATTAATAGTAATTACCTGAATGAAAAAAAAA ] [+] EMBL CB000823 [ ATTCT GCAT CGAACCAGACTGCTGGTTTCATCGACAGACAGACGATAACAATAGCCATGTCGGTTTTTAAGTGGCATCAGTGAAGTTCATAATCCTATTAATAGTAATTACCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_15136#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 125 fasta sequence [GCAGCTAAATTACCTCACTAAGGGAATAGCTGCGGCGCGGGGGCCCACCATCCGCACCCTCGCGGACATCAGCCGCGGCCCGTCCGGCTTCCCTGGGGGCGGCGGCGGCGGCGGCAGCGACTCCG] [+] EMBL BU672979 [GCAGCTAAATTACCTCACTAAGGGAATAGCTGCGGCGCGGGGGCCCACCATCCGCACCCTCGCGGACATCAGCCGCGGCCCGTCCGGCTTCCCTGGGGGCGGCGGCGGCGGCGGCAGCGACTCCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15136#1 ----------CTCGCCGAGTACGCGACCCGCGAGCCAAACCCTACCTTCCACCCCGCGAC 50 consensus_15136#3 ------------------------------------------------------------ consensus_15136#0 AGTCTTTCGACTCGCCGAGTACGCGACCCGCGAGCCAAACCCTACCTTCCTCCGCGCGAC 60 consensus_15136#2 ------------------------------------------------------------ consensus_15136#1 CTCGATCCCCCCACCCCCACCCCTCGGCGGCGATGAGCTCCTCCAACAACGGCGGTGGCG 110 consensus_15136#3 ---------------------------------------------GCAGCTA-AATTACC 14 consensus_15136#0 CTCGATCCCCCCACCCCCACCCCTCGGCGGCGATGAGCTCCTCCAACAACGGCGGTGGCG 120 consensus_15136#2 -----------------------------------------------GTTTGGAAGAACC 13 * consensus_15136#1 GCGACAAGAAGCCGGCGTCCGGCGGCCGCGGGGGCCCCAC-CATCCGCACCCTCGCGGAC 169 consensus_15136#3 TCACTAAGGGAATAGCT----GCGGC-GCGGGGGCCC-AC-CATCCGCACCCTCGCGGAC 67 consensus_15136#0 GCGACAAGAAGCCGGCGTCCGGCGGCCGCTGGGGCCCCAC-CATCCGCACCCTCGCGGAC 179 consensus_15136#2 CTTGGTGTGGATCTTCT-------GCAGAAGAGACCCCATGCACCAGCTCCTTCGCCAAC 66 * ** * * * *** * ** * ** ** **** ** consensus_15136#1 ATCAGCCGCGGCCCGTCCGGCTTCCCTGGGGGCGGCGGCGG-CGGCGGCAGCGACTCCGA 228 consensus_15136#3 ATCAGCCGCGGCCCGTCCGGCTTCCCTGGGGGCGGCGGCGG-CGGCGGCAGCGACTCCG- 125 consensus_15136#0 ATCAGCCGCGGCCCGTCCGGCTTCCCTGGGGGCGGCGGCGG-CGGCGGCAGCGACTCCGA 238 consensus_15136#2 TCAAG----AACCCCGCAGGTCCCGTTGGGAATATTTGTGGACAGACTCGCTCACCATGT 122 ** *** * ** * **** * ** * * * ** * consensus_15136#1 CGAGCCCCAGGAGTACTACACCGGCGGCGAGAAGAGTGGGATGCTTGTTCAGGACCCAAC 288 consensus_15136#3 ------------------------------------------------------------ consensus_15136#0 CGAGCCCCAGGAGTACTACACCGGCGGCGAGAAGAGTGGGATGCTTGTTCAGGACCCAAC 298 consensus_15136#2 GACATCACATACAGCTAAGGCTGCCACGATGACACTCAGCATGGTTGCCC--GTTTCAAA 180 consensus_15136#1 AAGAAGAAACACTGTGGACTCAATCTTCGAACAAGCTAGACAGATGGGTGCTCTCCAAGA 348 consensus_15136#3 ------------------------------------------------------------ consensus_15136#0 AAGAAGAAACACTGTGGACTCAATCTTCGAACAAGCTAGACAGATGGGTGCTCTCCAAGA 358 consensus_15136#2 CAATGCAACCACACAGGTGGCAGACAATCAAGGTGCTTTCAATCAGACCGCCTCTCAGGC 240 consensus_15136#1 TCAACCGCCTCCATTTGAGGATCAATCTTCCAGTTCAAGAAGCTNTACAGGGACTGGTCG 408 consensus_15136#3 ------------------------------------------------------------ consensus_15136#0 TCAACCGCCTCCATTTGAGGATCAATCTTCCAGTTCAAGAAGCTTTACAGGGACTGGTCG 418 consensus_15136#2 ACTGGGGCTACAAGCCCTGATCAAGCTCGCAAGACTGGGTTTGCCCGCCAGAAGCAGCTG 300 consensus_15136#1 ACTTCTTTCAGGAGAGACAGCACCAGCTGCACCTCCACCGCCTGGGAATGTACTT-ACAA 467 consensus_15136#3 ------------------------------------------------------------ consensus_15136#0 ACTTCTTTCAGGAGAGACAGCACCAGCTGCACCTCCACCGCCTGGGAATGTACTTCACAA 478 consensus_15136#2 GGCTGGATGCCAAGC-ACAAGACCGTGCGAGCAAGCTGTTCTGGCGAACTCTGTCATCAT 359 consensus_15136#1 TATACAATTCTGGAACANTGGATTCACTGGAGATGATGGTCCGCTGAGGGACTATGATGA 527 consensus_15136#3 ------------------------------------------------------------ consensus_15136#0 TATACAATTCTGGAACAATGGATTCACTGTAGATGATGGTCCGCTGAGGGACTATGATGA 538 consensus_15136#2 TCAGAAGATGTAGCCTAGGGCGCACGTCTCATATGGCTATCTTTGGAAACAAGAACCCGG 419 consensus_15136#1 T--CCTGCNATTGCTTGATTCATTGAGAGCCATCAGAAGTCC-AGTGCCCCCAGAGTT-- 582 consensus_15136#3 ------------------------------------------------------------ consensus_15136#0 T--CCTGCAAATGCTGATTTCATTGAGAGCATCAAGAAGTCCCAGTGCCCCCAGGAGTTG 596 consensus_15136#2 TGTCCTTAAATTGGTCGATTATCATCCAGATACTGGTACTGGAATACATTCTGGCATGCG 479 consensus_15136#1 GACCCAGCTGATNGA-GAACACCGGTC-------ATGTGATGTATCNACGACTGANGACT 634 consensus_15136#3 ------------------------------------------------------------ consensus_15136#0 GAGCCAGCTGATAGAAGAACACCTGTTCATGTGAATGTTATCAAACGACTGGAAGACTAT 656 consensus_15136#2 AACCAGACTGCTGGTTTCATCGACAGACAGACGATAACGATACCATGTCGGTTTTTAAGT 539 consensus_15136#1 ATAGCTCTTTAGG--CCTCATACTTTCAGGTGTGAAGACCTNNGTGGACTCTGAAAGAAG 692 consensus_15136#3 ------------------------------------------------------------ consensus_15136#0 CAGGCTCCTCTAA--GGCCTCCATCACCCTTCCAGGGTGTTGGAAGAACCCTTGGTGGTG 714 consensus_15136#2 GGCATCAGTGAAGTTCATAATCCTATTAATAGTAATTACCTGAATGAAAAAAAAAAAAAA 599 consensus_15136#1 CAGACAGTCTGCTTAGAACCCGAGCCGTGGATATTGCCATGGTCATACTCATAGTAGGTG 752 consensus_15136#3 ------------------------------------------------------------ consensus_15136#0 GATCTTCTGCAGAAGAGAGCCAGGCACCAGCTCCTGCCACTCAAGAACCCCGCAGGTCCG 774 consensus_15136#2 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA---------------- 643 consensus_15136#1 CAGGCCTCAGTGCCTGACTCCCAGCGCCACCGGGGATGCTTTCCGGTCGGGGGGTAGCAT 812 consensus_15136#3 ------------------------------------------------------------ consensus_15136#0 TTGGAAT-AGTTGTGGACGACTCGCTCCCATTTACATCCATACAGCTAAGGCTGGCCGAT 833 consensus_15136#2 ------------------------------------------------------------ consensus_15136#1 TGTAAGTGCCCAAAGAGAACTCGAACTGATTGGTGGGTGTTGATAAAGA--GGGCCGTTA 870 consensus_15136#3 ------------------------------------------------------------ consensus_15136#0 GGCACTCGCATGGTTGCCCGTTTCAACATGCACCACACGGTGGGCGACATCAGGTCTTTC 893 consensus_15136#2 ------------------------------------------------------------ consensus_15136#1 AACGTTGTATCGATTTCG------------------------------------------ 888 consensus_15136#3 ------------------------------------------------------------ consensus_15136#0 ATCGACGCCTCTCGGCCTGGGGCTACAAGGCCCTATCAGCTGCAGACTGGTTTCCCGCCG 953 consensus_15136#2 ------------------------------------------------------------ consensus_15136#1 ------------------------------------------------------------ consensus_15136#3 ------------------------------------------------------------ consensus_15136#0 AAGCAGCTGGCTGATCCAGCACAGACCGTCGAGCAAGCTGGTCTGGCGAACTCTGTCATC 1013 consensus_15136#2 ------------------------------------------------------------ consensus_15136#1 ------------------------------------------------------------ consensus_15136#3 ------------------------------------------------------------ consensus_15136#0 ATTCAGAAGATGTAGGCCTAGGGGCACGTCTCATATGCTATCTTTGAAACAAGAACCCGG 1073 consensus_15136#2 ------------------------------------------------------------ consensus_15136#1 ------------------------------------------------------------ consensus_15136#3 ------------------------------------------------------------ consensus_15136#0 TGTCCTTAAATTGTCGATTATCATGCCAGATACTGTACTGGAATACATTCTGCATCGAAC 1133 consensus_15136#2 ------------------------------------------------------------ consensus_15136#1 ------------------------------------------------------------ consensus_15136#3 ------------------------------------------------------------ consensus_15136#0 CAGACTGCTGGTTTCATCGACAGACAGACGATAACAATAGCCATGTCGGTTTTTAAGTGG 1193 consensus_15136#2 ------------------------------------------------------------ consensus_15136#1 ------------------------------------------------------------ consensus_15136#3 ------------------------------------------------------------ consensus_15136#0 CATCAGTGAAGTTCATAATCCTATTAATAGTAATTACCTGAATTGCAACAAAAAGTCGTG 1253 consensus_15136#2 ------------------------------------------------------------ consensus_15136#1 ------------------------------------------------------------ consensus_15136#3 ------------------------------------------------------------ consensus_15136#0 CCTCAATTTGATCCTGACTAATTGTTGCTTGAAAAGCTGTTAACTGTTCATCGAGATATA 1313 consensus_15136#2 ------------------------------------------------------------ consensus_15136#1 ------------------------------ consensus_15136#3 ------------------------------ consensus_15136#0 TCATCAAATCATTCGTGTTCATTTCAAAAA 1343 consensus_15136#2 ------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||