These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15138#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 990 fasta sequence [GCAGCAGAGCTCAGCGTTTGGAGCGAGATGATGAGCAGCAGCAGCAGCTTGGTGTCCGCCATTTCTGCGTCACCGTCTGCCACTGCAAAAGCTCGCCTTCGTCATGACGATGCAGCAACAGCAACAGGAGCATGGCGGGGCCCGGGCCACTGACGGAGATCGAGCCCGACCTGAACGAGGACCCCATTGATAAGTGGCGCACCAACGGCGTCAGCCCGGACGACTTCGAGTATGGAGTGTATGATGGTCACCACACATATAATGAAACCCAAGATAAGAAGGGCTTTTGGGAGGATGTCTCTGAGTGGTACCAAGAAGCTGAACCTCCTCAGGGCTTCCAAGCACTGATCTCCTGGTTGTTTCCTCCTGCAATCATCCTTGGCATGGCCTTCAATGTTCCGGGGGAGTACCTCTACATCGGCGCAGCAGTGTTCGTCGTCGTGTTCTGCGTTATCGAGATGGACAAACCGGACAAGCCAC-ACAACTTTGAGCCGGAGATCTACAT-GA-TGGAGAGATCGGCTCG-CGACAAGCTCATCGCCGACTACAACA-CCATGGACATCTGGGACTTCAACGAGAAGTACG-GCGAGCT-CTGGGACTTCACCGTCGACAGAAGAGATGAGATTGTGAAATCGTCTTAGATATGGTATTCAGAAATGGGGGGTCACATTTGTTAGATGCAGCTGCAGAAACAGTTCAGAAAATCAGAACCACTCCA-AAGAAAAGCAGGGTGGCAAAGCTGCAAGATGAGTCTCTTCAAAAT-AAAGAACTTTGAGATGA-AATGATGTGTGTATGGATCATC-TCATCTACTGTAAGGCCTGCTTTCTATGTCTCTGACAGTCTCAACTCTGAAGTTCTCAGCCAGGTACAAAAGGAGACTGAAAATTCTGTCATGTGTATTTTGTTTTCCCCCCAATGTAATGGAGAAAATCCTG-TGAATGACATCACTAATTCAATAGATA-TATATAGTAGTATAATGGAATAACTTTGGCA] [+] EMBL AK105788 [GCAGCAGAGCTCAGCGTTTGGAGCGAGATGATGAGCAGCAGCAGCAGCTTGGTGTCCGCCATTTCTGCGTCACCGTCTGCCACTGCAAAAGCTCGCCTTCGTCATGACGATGCAGCAACAGCAACAGGAGCATGGCGGGGCCCGGGCCACTGACGGAGATCGAGCCCGACCTGAACGAGGACCCCATTGATAAGTGGCGCACCAACGGCGTCAGCCCGGACGACTTCGAGTATGGAGTGTATGATGGTCACCACACATATAATGAAACCCAAGATAAGAAGGGCTTTTGGGAGGATGTCTCTGAGTGGTACCAAGAAGCTGAACCTCCTCAGGGCTTCCAAGCACTGATCTCCTGGTTGTTTCCTCCTGCAATCATCCTTGGCATGGCCTTCAATGTTCCGGGGGAGTACCTCTACATCGGCGCAGCAGTGTTCGTCGTCGTGTTCTGCGTTATCGAGATGGACAAACCGGACAAGCCAC ACAACTTTGAGCCGGAGATCTACAT GA TGGAGAGATCGGCTCG CGACAAGCTCATCGCCGACTACAACA CCATGGACATCTGGGACTTCAACGAGAAGTACG GCGAGCT CTGGGACTTCACCGTCGACAGAAGAGATGAGATTGTGAAATCGTCTTAGATATGGTATTCAGAAATGGGGGGTCACATTTGTTAGATGCAGCTGCAGAAACAGTTCAGAAAATCAGAACCACTCCA AAGAAAAGCAGGGTGGCAAAGCTGCAAGATGAGTCTCTTCAAAAT AAAGAACTTTGAGATGA AATGATGTGTGTATGGATCATC TCATCTACTGTAAGGCCTGCTTTCTATGTCTCTGACAGTCTCAACTCTGAAGTTCTCAGCCAGGTACAAAAGGAGACTGAAAATTCTGTCATGTGTATTTTGTTTTCCCCCCAATGTAATGGAGAAAATCCTG TGAATGACATCACTAA ] [+] EMBL AK067717 [ CCACTGACGGAGATCGAGCCCGACCTGAACGAGGACCCCATTGATAAGTGGCGCACCAACGGCGTCAGCCCGGACGACTTCGAGTATGGAGTGTATGATGGTCACCACACATATAATGAAACCCAAGATAAGAAGGGCTTTTGGGAGGATGTCTCTGAGTGGTACCAAGAAGCTGAACCTCCTCAGGGCTTCCAAGCACTGATCTCCTGGTTGTTTCCTCCTGCAATCATCCTTGGCATGGCCTTCAATGTTCCGGGGGAGTACCTCTACATCGGCGCAGCAGTGTTCGTCGTCGTGTTCTGCGTTATCGAGATGGACAAACCGGACAAGCCAC ACAACTTTGAGCCGGAGATCTACAT GA TGGAGAGATCGGCTCG CGACAAGCTCATCGCCGACTACAACA CCATGGACATCTGGGACTTCAACGAGAAGTACG GCGAGCT CTGGGACTTCACCGTCGACAGAAGAGATGAGATTGTGAAATCGTCTTAGATATGGTATTCAGAAATGGGGGGTCACATTTGTTAGATGCAGCTGCAGAAACAGTTCAGAAAATCAGAACCACTCCA AAGAAAAGCAGGGTGGCAAAGCTGCAAGATGAGTCTCTTCAAAAT AAAGAACTTTGAGATGA AATGATGTGTGTATGGATCATC TCATCTACTGTAAGGCCTGCTTTCTATGTCTCTGACAGTCTCAACTCTGAAGTTCTCAGCCAGGTACAAAAGGAGACTGAAAATTCTGTCATGTGTATTTTGTTTTCCCCCCAATGTAATGGAGAAAATCCTG TGAATGACATCACTAATTCAATAGATA TATATAGTAGTATAATGGAATAACTTTGGC ] [+] EMBL AK059975 [ CCACTGACGGAGATCGAGCCCGACCTGAACGAGGACCCCATTGATAAGTGGCGCACCAACGGCGTCAGCCCGGACGACTTCGAGTATGGAGTGTATGATGGTCACCACACATATAATGAAACCCAAGATAAGAAGGGCTTTTGGGAGGATGTCTCTGAGTGGTACCAAGAAGCTGAACCTCCTCAGGGCTTCCAAGCACTGATCTCCTGGTTGTTTCCTCCTGCAATCATCCTTGGCATGGCCTTCAATGTTCCGGGGGAGTACCTCTACATCGGCGCAGCAGTGTTCGTCGTCGTGTTCTGCGTTATCGAGATGGACAAACCGGACAAGCCAC ACAACTTTGAGCCGGAGATCTACAT GA TGGAGAGATCGGCTCG CGACAAGCTCATCGCCGACTACAACA CCATGGACATCTGGGACTTCAACGAGAAGTACG GCGAGCT CTGGGACTTCACCGTCGACAGAAGAGATGAGATTGTGAAATCGTCTTAGATATGGTATTCAGAAATGGGGGGTCACATTTGTTAGATGCAGCTGCAGAAACAGTTCAGAAAATCAGAACCACTCCA AAGAAAAGCAGGGTGGCAAAGCTGCAAGATGAGTCTCTTCAAAAT AAAGAACTTTGAGATGA AATGATGTGTGTATGGATCATC TCATCTACTGTAAGGCCTGCTTTCTATGTCTCTGACAGTCTCAACTCTGAAGTTCTCAGCCAGGTACAAAAGGAGACTGAAAATTCTGTCATGTGTATTTTGTTTTCCCCCCAATGTAATGGAGAAAATCCTG TGAATGACATCACTAATTCAATAGATA TATATAGT ] [+] EMBL AK059880 [ CCACTGACGGAGATCGAGCCCGACCTGAACGAGGACCCCATTGATAAGTGGCGCACCAACGGCGTCAGCCCGGACGACTTCGAGTATGGAGTGTATGATGGTCACCACACATATAATGAAACCCAAGATAAGAAGGGCTTTTGGGAGGATGTCTCTGAGTGGTACCAAGAAGCTGAACCTCCTCAGGGCTTCCAAGCACTGATCTCCTGGTTGTTTCCTCCTGCAATCATCCTTGGCATGGCCTTCAATGTTCCGGGGGAGTACCTCTACATCGGCGCAGCAGTGTTCGTCGTCGTGTTCTGCGTTATCGAGATGGACAAACCGGACAAGCCAC ACAACTTTGAGCCGGAGATCTACAT GA TGGAGAGATCGGCTCG CGACAAGCTCATCGCCGACTACAACA CCATGGACATCTGGGACTTCAACGAGAAGTACG GCGAGCT CTGGGACTTCACCGTCGACAGAAGAGATGAGATTGTGAAATCGTCTTAGATATGGTATTCAGAAATGGGGGGTCACATTTGTTAGATGCAGCTGCAGAAACAGTTCAGAAAATCAGAACCACTCCA AAGAAAAGCAGGGTGGCAAAGCTGCAAGATGAGTCTCTTCAAAAT AAAGAA ] [+] EMBL CF326628 [ CCACTGACGGAGATCGAGCCCGACCTGAACGAGGACCCCATTGATAAGTGGCGCACCAACGGCGTCAGCCCGGACGACTTCGAGTATGGAGTGTATGATGGTCACCACACATATAATGAAACCCAAGATAAGAAGGGCTTTTGGGAGGATGTCTCTGAGTGGTACCAAGAAGCTGAACCTCCTCAGGGCTTCCAAGCACTGATCTCCTGGTTGTTTCCTCCTGCAATCATCCTTGGCATGGCCTTCAATGTTCCGGGGGAGTACCTCTACATCGGCGCAGCAGTGTTCGTCGTCGTGTTCTGCGTTATCGAGATGGACAAACCGGACAAGCCAC ACAACTTTGAGCCGGAGATCTACAT GANTGGAGAGATCGGCTCG CGACAAGCTCATCGCCGACTACAACA CCATGGACATCTGGGACTTCAACGAGAAGTACG GCGAGCT CTGGGACTTC ] [+] EMBL CF326272 [ CCACTGACGGAGATCGAGCCCGACCTGAACGAGGACCCCATTGATAAGTGGCGCACCAACGGCGTCAGCCCGGACGACTTCGAGTATGGAGTGTATGATGGTCACCACACATATAATGAAACCCAAGATAAGAAGGGCTTTTGGGAGGATGTCTCTGAGTGGTACCAAGAAGCTGAACCTCCTCAGGGCTTCCAAGCACTGATCTCCTGGTTGTTTCCT ] [-] EMBL CF326371 [ CACTGACGGAGATCGAGCCCGACCTGAACGAGGACCCCATTGATAAGTGGCGCACCAACGGCGTCAGCCCGGACGACTTCGAGTATGGAGTGTATGATGGTCACCACACATATAATGAAACCCAAGATAAGAAGGGCTTTTGGGAGGATGTCTCTGAGTGGTACCAAGAAGCTGAACCTCCTCAGGGCTTCCAAGCACTGATCTCCTGGTTGTTTCCTCCTGCAATCATCCTTGGCATGGCCTTCAATGTTCCGGGGGAGTACCTCTACATCGGCGCAGCAGTGTTCGTCGTCGTGTTCTGCGTTATCGAGATGGACAAACCGGACAAGCCAC ACAACTTTGAGCCGGAGATCTACAT GA TGGAGAGATCGGCTCG CGACAAGCTCATCGCCGACTACAACA CCATGGACATCTGGGACTTCAACGAGAAGTACG GCGAG ] [-] EMBL CF333184 [ GATCTCCTGGTTGTTTCCTCCTGCAATCATCCTTGGCATGGCCTTCAATGTTCCGGGGGAGTACCTCTACATCGGCGCAGCAGTGTTCGTCGTCGTGTTCTGCGCTATCGAGATGGACAAACCGGACAAGCCAC ACAACTTTGAGCCGGAGATCTACAT GA TGGAGAGATCGGCTCG CGACAAGCTCATCGCCGACTACAACA CCATGGACATCTGGGACTTCAACGAGAAGTACG GCGAGCT CTGGGACTTCACCGTCGACAGAAGAGATGAGATTGTGAAATCGTCTTAGATATGGTATTCAGAAATGGGGGGTCACATTTGTTAGATGCAGCTGCAGAAACAGTTCAGAAAATCAGAACCACTCCA AAGAAAAGCAGGGTGGCAAAGCTGCAAGATGAGTCTCTTCAAAAT AAAGAACTTTGAGATGA AATGATGTGTGTATGGATCATC TCATCTACTGTAAGGCCTGCTTTCTATGTCTCTGACAGTCTCAACTCTGAAGTTCTCAGCCAGGTACAAAAGGAGACTGAAAATTCTGTCATGTGTATTTTGTTTTCCCCCCAATGTAATGGAGAAAATCCTG TGAATGAaaaaaa ] [-] EMBL CF335249 [ GCAATCATCCTTGGCATGGCCTTCAATGTTCCGGGGGAGTACCTCTACATCGGCGCAGCAGTGTTCGTCGTCGTGTTCTGCGTTATCGAGATGGACAAACCGGACAAGCCAC ACAACTTTGAGCCGGAGATCTACAT GA TGGAGAGATCGGCTCG CGACAAGCTCATCGCCGACTACAACA CCATGGACATCTGGGACTTCAACGAGAAGTACG GCGAGCT CTGGGACTTCACCGTCGACAGAAGAGATGAGATTGTGAAATCGTCTTAGATATGGTATTCAGAAATGGGGGGTCACATTTGTTAGATGCAGCTGCAGAAACAGTTCAGAAAATCAGAACCACTCCA AAGAAAAGCAGGGTGGCAAAGCTGCAAGATGAGTCTCTTCAAAAT AAAGAACTTTGAGATGA AATGATGTGTGTATGGATCATC TCATCTACTGTAAGGCCTGCTTTCTATGTCTCTGACAGTCTCAACTCTGAAGTTCTCAGCCAGGTACAAAAGGAGACTGAAAATTCTGTCATGTGTATTTTGTTTTCCCCCCAATGTAATGGAGAAAATCCTG TGAATGAaaaaa ] [+] EMBL BM421641 [ GCCACAACAACTTTGA CCGGAGATCTACAT GA TGGAGAGATCGGCTCG CGACAAGCTCATC CCGACTAC ACA CCATGGACATCTGGGACTTCAACGAGAAGTACG GCGAGCT CTGGGACTTCACCGTCGACAGAAGAGATGAGATTGTGAAATCGTCTTAGATATGGTATTCAGAAATGGGGGGTCACATTTGTTAGATGCAGCTGCAGAAACAGTTCAGAAAATCAGAACCACTCC AAGAAAAGCAGGGTGGC AAGCTGCAAGATGAGTCTCTTCAAAAT AAAGAACTTTGAGATGA AATGATGTGTGTATGGATCATC TCATCTACTGTAAGNCCTGCTTTCTATGTCTCTGACAGTCTCAACTCTGAAGTTCTCAGCCAAGTAC AAAGGAGACTGAAAATTCTGTCATGTGTATTTTGTTTTCCCCCC ATGTAATGGAGAAAATCCTG TGAATGACATCACTAATTC ATAGATACTATATAGTAGTATAATGGAATAAaaaaaaaa] [+] EMBL BQ906467 [ ACAACTTTGAGCCGGAGATCTACATGGA TGGAGAGATCGGCTCGCCGACAAGCTCATCGCCGACTACAACACCCATGGACATCTGGGACTTCAACGAGAAGTACGCGCGAGCTNNTGGGACTTCACCGTCGACAGAAGAGATGAGATTGTGAAATCGTNTTAGATATGGTATTCAGAAATGGGGGGTCACATTTGTTAGATGCAGCTGCAGAAACAGTTCAGAAAATCAGAACCACTCCATAAGAAAAGCAGGGTGGCAAAGCTGCAAGATGAGTCTCTTCCAAATNTAAGNACTTTGAGATGACAATGATGTGTGTATGGATCATCATCATCTACTGTAAGGCCTGCCNTCTATGTCTCTGACAGTCTCAACTCTGAAGTTTTCAGCCAAGTACAAAAGGAGACTGAAAATTCTGTCATGTGTATTTTGTTTTCCCCCCAATGTAATGGAGAAAATCCTGCTGAATGACATCACTAATTCAATAGATAaaa ] [+] EMBL AK060605 [ CTCATCGCCGACTACAACA CCATGGACATCTGGGACTTCAACGAGAAGTACG GCGAGCT CTGGGACTTCACCGTCGACAGAAGAGATGAGATTGTGAAATCGTCTTAGATATGGTATTCAGAAATGGGGGGTCACATTTGTTAGATGCAGCTGCAGAAACAGTTCAGAAAATCAGAACCACTCCA AAGAAAAGCAGGGTGGCAAAGCTGCAAGATGAGTCTCTTCAAAAT AAAGAA ] [-] EMBL AA754399 [ TGGTATTCAGAAAT GGGGGMCACATTTGTTAGATGCAGCTGCAGAAACAGTTCAGAAAATCAGAACCACTCCA AAGAAAAGCAGGGTGGCAAAGCTGCAAGATGAGTCTCTTCAAAAT AAAGAACTTTGAGATGA AATGATGTGTGTATGGATCATC TCATCTACTGTAAGGCCTGCTTTCTATGTCTCTGACAGTCTCAACTCTGAAGTTCTCAGCCAAGTACAAAAGGAGACTGAAAATTCTGTCATGTGTATTTTGTTTTCCCCCCAATGTAATGGAGAAAATCCTG TGAATGACATCACTAATTCAATAGATA TATATAGTAGTATKAT GNATAAC ] consensusID : consensus_15138#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 895 fasta sequence [CCACTGACGGAGATCGAGCCCGACCTGAACGAGGACCCCATTGATAAGTGGCGCACCAACGGCGTCAGCCCGGTCTGTCCTCCTCGCCGTCGCCGGCCACCGTGTTGAGAATTTCATTATTTTTCTCTATTCCAAGCAGTTTCCATGGTTTCTTTGATTCTTTCTTCAGTGATTGCTGCTGCTGTGCTGTGTTGTCTGAAGAAATGGTTTTGACACTGAAAAGAATCTGCTTTGCAGGACGACTTCGAGTATGGAGTGTATGATGGTCACCACACATATAATGAAACCCAAGATAAGAAGGGCTTTTGGGAGGATGTCTCTGAGTGGTACCAAGAAGCTGAACCTCCTCAGGGCTTCCAAGCACTGATCTCCTGGTTGTTTCCTCCTGCAATCATCCTTGGCATGGCCTTCAATGTTCCGGGGGAGTACCTCTACATCGGCGCAGCAGTGTTCGTCGTCGTGTTCTGCGTTATCGAGATGGACAAACCGGACAAGCCACACAACTTTGAGCCGGAGATCTACATGATGGAGAGATCGGCTCGCGACAAGCTCATCGCCGACTACAACACCATGGACATCTGGGACTTCAACGAGAAGTACGGCGAGCTCTGGGACTTCACCGTCGACAGAAGAGATGAGATTGTGAAATCGTCTTAGATATGGTATTCAGAAATGGGGGGTCACATTTGTTAGATGCAGCTGCAGAAACAGTTCAGAAAATCAGACCCACTCCAAAGAAAAGCAGGGTGGCAAAGCTGCAAGATGAGTCTCTTCAAAATAAAGAACTTTGAGATGAAATGATGTGTGTATGGATCATCTCATCTACTGTAAGGCCTGCTTTCTATGTCTCTGACAGTCTCAACTCTGAAGTTCTCAGCCAGGTACAAAAGGAGAC] [+] EMBL CB665101 [CCACTGACGGAGATCGAGCCCGACCTGAACGAGGACCCCATTGATAAGTGGCGCACCAACGGCGTCAGCCCGGTCTGTCCTCCTCGCCGTCGCCGGCCACCGTGTTGAGAATTTCATTATTTTTCTCTATTCCAAGCAGTTTCCATGGTTTCTTTGATTCTTTCTTCAGTGATTGCTGCTGCTGTGCTGTGTTGTCTGAAGAAATGGTTTTGACACTGAAAAGAATCTGCTTTGCAGGACGACTTCGAGTATGGAGTGTATGATGGTCACCACACATATAATGAAACCCAAGATAAGAAGGGCTTTTGGGAGGATGTCTCTGAGTGGTACCAAGAAGCTGAACCTCCTCAGGGCTTCCAAGCACTGATCTCCTGGTTGTTTCCTCCTGCAATCATCCTTGGCATGGCCTTCAATGTTCCGGGGGAGTACCTCTACATCGGCGCAGCAGTGTTCGTCGTCGTGTTCTGCGTTATCGAGATGGACAAACCGGACAAGCCACACAACTTTGAGCCGGAGATCTACATGATGGAGAGATCGGCTCGCGACAAGCTCATCGCCGACTACAACACCATGGACATC ] [-] EMBL CB665102 [ TTCATTATTTTTCTCTATTCCAAGCAGTTTCCATGGTTTCTTTGATTCTTTCTTCAGTGATTGCTGCTGCTGTGCTGTGTTGTCTGAAGAAATGGTTTTGACACTGAAAAGAATCTGCTTTGCAGGACGACTTCGAGTATGGAGTGTATGATGGTCACCACACATATAATGAAACCCAAGATAAGAAGGGCTTTTGGGAGGATGTCTCTGAGTGGTACCAAGAAGCTGAACCTCCTCAGGGCTTCCAAGCACTGATCTCCTGGTTGTTTCCTCCTGCAATCATCCTTGGCATGGCCTTCAATGTTCCGGGGGAGTACCTCTACATCGGCGCAGCAGTGTTCGTCGTCGTGTTCTGCGTTATCGAGATGGACAAACCGGACAAGCCACACAACTTTGAGCCGGAGATCTACATGATGGAGAGATCGGCTCGCGACAAGCTCATCGCCGACTACAACACCATGGACATCTGGGACTTCAACGAGAAGTACGGCGAGCTCTGGGACTTCACCGTCGACAGAAGAGATGAGATTGTGAAATCGTCTTAGATATGGTATTCAGAAATGGGGGGTCACATTTGTTAGATGCAGCTGCAGAAACAGTTCAGAAAATCAGACCCACTCCAAAGAAAAGCAGGGTGGCAAAGCTGCAAGATGAGTCTCTTCAAAATAAAGAACTTTGAGATGAAATGATGTGTGTATGGATCATCTCATCTACTGTAAGGCCTGCTTTCTATGTCTCTGACAGTCTCAACTCTGAAGTTCTCAGCCAGGTACAAAAGGAGAC] consensusID : consensus_15138#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 701 fasta sequence [AGCAGCAGAGCTCAGCGTTTGGAGCGAGATGATGAGCAGCAGCAGCAGCTTGGTGTCCGCCATTTCTGCGTCACCGTCTGCCACTGCAAAAGCTCGCCTTCGTCATGACGATGCAGCAACAGCAACAGGAGCAGCAGCAGCAGCAGCAGTAGCAGCGAGGCAGCTAAAGACGGAGCATGGCGGCTGCTGCTGCTGCCGGAGCAGAGGCGGGCGGTGGGGCGAGGGCGGGGCCCGGGCCACTGACGGAGATCGAGCCCGACCTGAACGAGGACCCCATTGATAAGTGGCGCACCAACGGCGTCAGCCCGGACGAC-TTCGAGTATGGAGTGTATGATGGTCACCACACATATAATGAAACCCAAGATAAGAAGGGCTTTTGGGAGGATGTCTCTGAGTGGTACCAAGAAGCTGAACCTCCTCAGGGCTTCCAAGCACTGATCTCTTGGTTGTTTCCTCCTGCAATCATCCTTGGCATGGCCTTCAATGTTCCGGGGGGAGTACCTCTACATCGGCGCAGCAGTGTTCGTCGTCGTGTTCTGCGCTATCGAGATGGACAAACCGGACAAGCCACACAACTTTGAGCCGGAGATCTACATGATGGANAGATCGGCTCGCGACAAGCTCATCGCCGACTACAACACCATGGACATCTGGGACTTCAACGAGAAGTACGGCGAGCTCTGGGACTTCACGCAGCCCGG] [+] EMBL CF335248 [AGCAGCAGAGCTCAGCGTTTGGAGCGAGATGATGAGCAGCAGCAGCAGCTTGGTGTCCGCCATTTCTGCGTCACCGTCTGCCACTGCAAAAGCTCGCCTTCGTCATGACGATGCAGCAACAGCAACAGGAGCAGCAGCAGCAGCAGCAGTAGCAGCGAGGCAGCTAAAGACGGAGCATGGCGGCTGCTGCTGCTGCCGGAG ] [+] EMBL CF333183 [ TTCTGCGTCACCGTCTGCCACTGCAAAAGCTCGCCTTCGTCATGACGATGCAGCAACAGCAACAGGAGCAGCAGCAGCAGCAGCAGTAGCAGCGAGGCAGCTAAAGACGGAGCATGGCGGCTGCTGCTGCTGCCGGAGCAGAGGCGGGCGGTGGGGCGAGGGCGGGGCCCGGGCCACTGACGGAGATCGAGCCCGACCTGAACGAGGACCCCATTGATAAGTGGCGCACCAACGGCGTCAGCCCGGACGAC TTCGAGTATGGAGTGTATGATGGTCACCACACATATAATGAAACCCAAGATAAGAAGGGCTTTTGGGAGGATGTCTCTGAGTGGTACCAAGAAGCTGAACCTCCTCAGGGCTTCCAAGCACTGATCTCTTGGTTGTTTCCTCCTGCAATCATCCTTGGCATGGCCTTCAATGTTCCGGGGGGAGTACCTCTACATCGGCGCAGCAGTGTTCGTCGTCGTGTTCTGCGCTATCGAGATGGACAAACCGGACAAGCCACACAACTTTGAGCCGGAGATCTACATGATGGANAGATCGGCTCGCGACAAGCTCATCGCCGACTACAACACCATGGACATCTGGGACTTCAACGAGAAGTACGGCGAGCTCTGGGACTTCAC ] [+] EMBL OSS11540A [ CCACTGACGGAGATCGAGCCCGACCTGAACGAGGACCCCATTGATAAGTGGCGCACCAACGGCGTCACCCGGGACGACTTTCGAGTATGGAGTGTATTATGGTCANCACACATATAATGAAACCCAAGATAA ] [-] EMBL CF326646 [ CACTGACGGAGATCGAGCCCGACCTGAACGAGGACCCCATTGATAAGTGGCGCACCAACGGCGTCAGCCCGGACGAC TTCGAGTATGGAGTGTATGATGGTCACCACACATATAATGAAACCCAAGATAAGAAGGGCTTTTGGGAGGATGTCTCTGAGTGGTACCAAGAAGCTGAACCTCCTCAGGGCTTCCAAGCACTGATCTCCTGGTTGTTTCCTCCTGCAATCATCCTTGGCATGGCCTTCAATGTTCC GGGGGAGTACCTCTACATCGGCGCAGCAGTGTTCGTCGTCGTGTTATGAGTTATCGAGATGGACAAACCGGACAAGCCACACAACTTTGAGCCGGAGATCTACATGATGGAGAGATCGGCTCGCGACAAGCTCATCGCCGACTACAACACCATGGACATCTGGGACTTCAACGAGAAGTACGGCGAGCTCTGGGACTTAAAGCAGCCCGG] consensusID : consensus_15138#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 670 fasta sequence [GCCTTAATATGGGGCAAGAANNGCTTGCGTGNTGCGGTTTTCCGTTANTTCCGATTGGGNCCCNTNNCCCCAGACGCATGCGCCCAGCATCNAATCTTTTTNACCCCGGTTCAGTACCAGTGATGGAGGAGATCTCGNTNTTCGCAGACCAAGGNCTAATTCCCCGTANTACAACACCCTATGGACATCTGGGACTTCACACGAGAAGTACGGCGAGCTCTGGGACTTCACCGTCGACAGAAAGAGATGAGATTGTGGAAATCGTCTTAAGAATATGGGTAATTCAAGATAATGGGGGGTCAACATTTGTTAGATCGCAGTCTNCTAGAACCTAGTTCTAGAATATATCTAGATNCCNACTCCATATAGAATATAGCCAGGGTGCGCATAAGCTGCATAGATGGAGTCTCTTCAAAATATAAGAACTTTGGAGATGGAAATGATGTGTGTATGGATCATCTCATCTACTGTAAGGCCTGCTTTCATATGTCTCTGACACGTCTTCAACTCTGAAGTTCTTCAGCCAAGNACAAAAGGAGACTGAAAATTCTGGTCATGTGTATTTTGTTTTCCCCCCCAAATGTAATGGAGAAAATCCCTGGTGAATGACATCACTAATTCAATAGATATATATAGTAGTATAATNGGAATAACTTGGNCATCACCCTCC] [+] EMBL BQ907141 [GCCTTAATATGGGGCAAGAANNGCTTGCGTGNTGCGGTTTTCCGTTANTTCCGATTGGGNCCCNTNNCCCCAGACGCATGCGCCCAGCATCNAATCTTTTTNACCCCGGTTCAGTACCAGTGATGGAGGAGATCTCGNTNTTCGCAGACCAAGGNCTAATTCCCCGTANTACAACACCCTATGGACATCTGGGACTTCACACGAGAAGTACGGCGAGCTCTGGGACTTCACCGTCGACAGAAAGAGATGAGATTGTGGAAATCGTCTTAAGAATATGGGTAATTCAAGATAATGGGGGGTCAACATTTGTTAGATCGCAGTCTNCTAGAACCTAGTTCTAGAATATATCTAGATNCCNACTCCATATAGAATATAGCCAGGGTGCGCATAAGCTGCATAGATGGAGTCTCTTCAAAATATAAGAACTTTGGAGATGGAAATGATGTGTGTATGGATCATCTCATCTACTGTAAGGCCTGCTTTCATATGTCTCTGACACGTCTTCAACTCTGAAGTTCTTCAGCCAAGNACAAAAGGAGACTGAAAATTCTGGTCATGTGTATTTTGTTTTCCCCCCCAAATGTAATGGAGAAAATCCCTGGTGAATGACATCACTAATTCAATAGATATATATAGTAGTATAATNGGAATAACTTGGNCATCACCCTCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15138#1 CCACTGACGGAGATCGAGCCCGACCTGAACGAGGACCCCATTGATAAGTGGCGCACCAAC 60 consensus_15138#3 ------------------------------------------------------------ consensus_15138#0 --------------------GCAGCAGAGCTCAGCGTTTGGAGCGAGATGATGAGCAGCA 40 consensus_15138#2 ------------------------------------------------------------ consensus_15138#1 GGCGTCAGCCCGGTCTGTCCTCCTCGCCGTCGCCGGCCACCGTGTTGAGAATTT-CATTA 119 consensus_15138#3 ------------------------------------------------------------ consensus_15138#0 GCAGCAGCTTGGTGTCCGCCATTTCTGCGTCACCGTCTGCCACTGCAAAAGCTCGCCTTC 100 consensus_15138#2 ------------------------------------------------------------ consensus_15138#1 TTTTTCTCTATTCCAAGCAGTTTCCATGGTTTCTTTGATTCTTTCTTCAGTGATTGCTGC 179 consensus_15138#3 ------------------------------------------------------------ consensus_15138#0 GTCATGACGATGCAGCAACAGCAACAGGAGCATGGCGGGGCCCGGGCCACTGACGGAGAT 160 consensus_15138#2 ------------------------------------------------------------ consensus_15138#1 TGCTGTGCTGTGTTGTCTGAAGAAATGGTTTTGACACTGAAAAGAATCTGCTTTGCAGGA 239 consensus_15138#3 ------------------------------------------------------------ consensus_15138#0 CGAGCCCGACCTGAACGAGGACCCCATTGATAAGTGGCGCACCAACGGCGTCAGCCCGGA 220 consensus_15138#2 ------------------------------------------------------------ consensus_15138#1 CGACTTCGAGTATGGAGTGTATGATGGTCACCACACATATAATGAAACCCAAGATAAGAA 299 consensus_15138#3 ------------------------------------------------------------ consensus_15138#0 CGACTTCGAGTATGGAGTGTATGATGGTCACCACACATATAATGAAACCCAAGATAAGAA 280 consensus_15138#2 ------------------------------------------------------------ consensus_15138#1 GGGCTTTTGGGAGGATGTCTCTGAGTGGTACCAAGAAGCTGAACCTCCTCAGGGCTTCCA 359 consensus_15138#3 ------------------------------------------------------------ consensus_15138#0 GGGCTTTTGGGAGGATGTCTCTGAGTGGTACCAAGAAGCTGAACCTCCTCAGGGCTTCCA 340 consensus_15138#2 ------------------------------------------------------------ consensus_15138#1 AGCACTGATCTCCTGGTTGTTTCCTCCTGCAATCATCCTTGGCATGGCCTTCAATGTTCC 419 consensus_15138#3 ---------------GCCTTAATATGGGGCAAGAANNGCTTGCGTGN--TGCGGTTTTCC 43 consensus_15138#0 AGCACTGATCTCCTGGTTGTTTCCTCCTGCAATCATCCTTGGCATGGCCTTCAATGTTCC 400 consensus_15138#2 ---------------------------AGCAGCAGAGCTCAGCGTTTGGAGCGAGATGAT 33 *** ** * * * consensus_15138#1 GGGGGAGTACCTCTACATCGGCGCAGCAGTGTTCGTCGTCGTGTTCTGCGTTATCGAGAT 479 consensus_15138#3 GT-----TANTTCCGATTGGGNCCCNTNNCCCCAGACG-CATGCGCCCAGCATCNAATCT 97 consensus_15138#0 GGGGGAGTACCTCTACATCGGCGCAGCAGTGTTCGTCGTCGTGTTCTGCGTTATCGAGAT 460 consensus_15138#2 GAGCAGCAGCAGCAGCTTGGTGTCCGCCATTTCTG-CGTCAC-CGTCTGCCACTGCAAAA 91 * * * * * * ** * * consensus_15138#1 GGACAAACCGGACAAGCC-ACACAACTTTGA-GCCGGAGATCTACATGATGGAGAGATCG 537 consensus_15138#3 TTTTNACCCCGGTTCAGT-AC-CAGTGATGG-A--GGAGATCTCGNTNTTCGCA-----G 147 consensus_15138#0 GGACAAACCGGACAAGCC-ACACAACTTTGA-GCCGGAGATCTACATGATGGAGAGATCG 518 consensus_15138#2 GCTCGCCTTCGTCATGACGATGCAGCAACAGCAACAGGAGCAGCAGCAGCAGCAGCAGTA 151 * * ** * * consensus_15138#1 GCTCGCGACAAGCTCATCGCCGACTACAACACC--ATGGACATCTGGGACTTCA-ACGAG 594 consensus_15138#3 ACCAAGGNCTAATTCCCCGT--ANTACAACACCCTATGGACATCTGGGACTTCACACGAG 205 consensus_15138#0 GCTCGCGACAAGCTCATCGCCGACTACAACACC--ATGGACATCTGGGACTTCA-ACGAG 575 consensus_15138#2 GCAGCGAGGCAGCTAAAGACGGAGCATGGCGGCTGCTGCTGCTGCCGGAGCAGAGGCGGG 211 * * * * * * * ** * *** * ** * consensus_15138#1 AAGTACGGCGAGCTCTGGGACTTCACCGTCGACAGAA---GAGATGAGATTGTG-AAATC 650 consensus_15138#3 AAGTACGGCGAGCTCTGGGACTTCACCGTCGACAGAAA--GAGATGAGATTGTGGAAATC 263 consensus_15138#0 AAGTACGGCGAGCTCTGGGACTTCACCGTCGACAGAA---GAGATGAGATTGTG-AAATC 631 consensus_15138#2 CGGTGGGGCGAGGGCGGGGCCCGGGCCACTGACGGAGATCGAGCCCGACCTGAA-CGAGG 270 ** ****** * *** * ** *** ** *** ** * consensus_15138#1 GTCTTAG--ATATGGT--ATTCAGA--AATGGGGGGTCA-CATTTGTTAGAT-GCAG-CT 701 consensus_15138#3 GTCTTAAGAATATGGGTAATTCAAGATAATGGGGGGTCAACATTTGTTAGATCGCAGTCT 323 consensus_15138#0 GTCTTAG--ATATGGT--ATTCAGA--AATGGGGGGTCA-CATTTGTTAGAT-GCAG-CT 682 consensus_15138#2 ACCCCATTGATAAGTGGCGCACCAA-CGGCGTCAGCCCG-GACGACTTCGAGTATGGAGT 328 * * *** * * * * * * ** ** * * consensus_15138#1 GCAGAAAC--AGTTC-AGAAAATC-----AGACCCACTCCAAAGAAAA------GCAGGG 747 consensus_15138#3 NCTAGAACCTAGTTCTAGAATATATCTAGATNCCNACTCCATATAGAATATA-GCCAGGG 382 consensus_15138#0 GCAGAAAC--AGTTC-AGAAAATC-----AGAACCACTCCAAAGAAAA------GCAGGG 728 consensus_15138#2 GTATGA---TGGTCACCACACATATAATGAAACCCAAGATAAGAAGGGCTTTTGGGAGGA 385 * ** * ** * * * * * *** consensus_15138#1 TG-GCA-AAGCTGCA---AGATG---AGTCTCTTCAAAATA-AAGAACTTTG-AGATG-A 796 consensus_15138#3 TGCGCATAAGCTGCAT--AGATGG--AGTCTCTTCAAAATATAAGAACTTTGGAGATGGA 438 consensus_15138#0 TG-GCA-AAGCTGCA---AGATG---AGTCTCTTCAAAATA-AAGAACTTTG-AGATG-A 777 consensus_15138#2 TGTCTCTGAGTGGTACCAAGAAGCTGAACCTCCTCAGGGCTTCCAAGCACTGATCTCTTG 445 ** ** * * *** * * *** *** * * ** consensus_15138#1 AATGATGTGTGTATGGATCATCT----CATCTACTGTAAGG--CCTGCTTTC-TATGTCT 849 consensus_15138#3 AATGATGTGTGTATGGATCATCT----CATCTACTGTAAGG--CCTGCTTTCATATGTCT 492 consensus_15138#0 AATGATGTGTGTATGGATCATCT----CATCTACTGTAAGG--CCTGCTTTC-TATGTCT 830 consensus_15138#2 GTTGTTTCCTCCTGCAATCATCCTTGGCATGGCCTTCAATGTTCCGGGGGGAGTACCTCT 505 ** * * ****** *** ** ** * ** * ** *** consensus_15138#1 CTGACA-GTCT-CAAC-TCTGAAGTTCT-CAGCCAGGTACAAAAGGAGAC---------- 895 consensus_15138#3 CTGACACGTCTTCAAC-TCTGAAGTTCTTCAGCCAAGNACAAAAGGAGACTGAAAATTCT 551 consensus_15138#0 CTGACA-GTCT-CAAC-TCTGAAGTTCT-CAGCCAGGTACAAAAGGAGACTGAAAATTCT 886 consensus_15138#2 ACATCGGCGCAGCAGTGTTCGTCGTCGTGTTCTGCGCTATCGAGATGGACAAACCGGACA 565 * * ** * * ** * * * *** consensus_15138#1 ------------------------------------------------------------ consensus_15138#3 GGTCATGTGTATTTTGTTTTCCCCCCCAAATGTAATGGAGAAAATCCCTGGTGAATGACA 611 consensus_15138#0 G-TCATGTGTATTTTGTTTTCCCCCC--AATGTAATGGAGAAAATCCT--GTGAATGACA 941 consensus_15138#2 AGCCACACAACTTTGAGCCGGAGATCTACATGATGGANAGATCGGCTCGCGACAAGCTCA 625 consensus_15138#1 ------------------------------------------------------------ consensus_15138#3 TCACTAATT----CAATAGATATATATAGTAGTATAATNGGAATAACTTGGNCATCACCC 667 consensus_15138#0 TCACTAATT----CAATAGATATATATAGTAGTATAATGG-AATAACTTTGGCA------ 990 consensus_15138#2 TCGCCGACTACAACACCATGGACATCTGGGACTTCAACGAGAAGTACGGCGAGCTCTGGG 685 consensus_15138#1 ---------------- consensus_15138#3 TCC------------- 670 consensus_15138#0 ---------------- consensus_15138#2 ACTTCACGCAGCCCGG 701 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||