These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15145#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 920 fasta sequence [CGGCACGAGCANGTCTCGANNTCAGCNGANGTCANNGGAAATGTNACNCCAGATGCCGTTCTTCAGACCGTTTCAAAGACGGGCAAGAAGACCTCGTTCTGGGATGCTGAGCCTGCACCTGTTGAAGCTACTGCTGCTTCATCTTAAAATGTCATTTTATCTCCTGTGATATGTAAAGGTTGATGTAACAATTTCCCAGTGGAACTGTCTTGTGAGATCACAAAGTTGTCTGTTCTTATGATCATAACTTGAAGCTATTTCAAATAATATCAGACAGCTAGTTACACATATGTACATCTTTGTATTTCTCTATCCTACCAGTATTGGACTATTGGTATGATCAATTTGAGACACCAAAAAGTGGCCTGCGGTGCTTCCATTGACCCCGACATCAGCATCAATAGCACTCATTGAGATCTTGGTGACAGCATTCGACTATGTAACAAACAACGTCCACTTGGGTGCCATCAGCTCTCCTCATATTCTATCTAAGCTTGTTGATGTTGCAAGGAATAACAACTTGGAAGAAGGTGTGGCCCTGGCAGCTATTCTCGTCAGGTGTGTACGGCTTAATGGAAACTGCAAGAAGTTCTTGTCACAGGCTACTCCAGTGGAACCGTTCCTTCACCTTGTAAGACGAAAAGAACACCGTGCCAAGTGTGCCGCTCTTGAATACTTCCATGAGATTCTTCAAATTCCTCGGTCTGCAGCGAACTCCCTGCTGCAAGAAATAAAGAAGCTAGGAGGCATTGCCATTATGCATACATTGATGGCCTGCCTCCATCAAACTGAACCTGAACACAGGGTTTTAGCAGCTAATCTTCTTCTCCAATTGGATATGCTGGACAAACCAGATGGTAAAAGTGTATTCAGGGATGAAGCAATGGAAGTCCTGTTGGATTCCCTATCATCCCAAGAAA] [+] EMBL AA753109 [CGGCACGAGCANGTCTCGANNTCAGCNGANGTCANNGGAAATGTNACNCCAGATGCCGTTCTTCAGACCGTTTCAAAGACGGGCAAGAAGACCTCGTTCTGGGATGCTGAGCCTGCACCTGTTGAAGCTACTGCTGCTTCATCTTAAAATGTCATTTTATCTCCTGTGATATGTAAAGGTTGATGTAACAATTTCCCAGTGGAACTGTCTTGTGAGATCACAAAGTTGTCTGTTCTTATGATCATAACTTGAAGCTATTTCAAATAATATCAGACAGCTAG ] [+] EMBL OSR3313A [ ATGTCATTTTATCTCCTGTGATATGTAAAGGTTGATGTAACAATTTCCCAGTGGAACTGTCTTGTGAGATCACAAAGTTGTCTGTTCTTATGATCATAACTTGAAGCTATTTCAAATAATATCAGACAGCTAGTTACACATATGTACATCTTTGTATTTCTCTATCCTACCAGTATTGGACTATTGGTATGATCAATTTGAGACACCAAAAAGTGGCCTGCGGTGCTTCCATTGACCCCGACATCAGCATCAATAGCACTCATTGAGATCTTGGTGACAGCATTCGACTATGTAACAAACAACGTCCACTTGGGTGCCATCAGCTCTCCTCATATTCTATCTAAGCTTGTTGATGTTGCAAGGAATA ] [+] EMBL CB637270 [ CATTCGACTATGTAACAAACAACGTCCACTTGGGTGCCATCAGCTCTCCTCATATTCTATCTAAGCTTGTTGATGTTGCAAAGAATAACAACTTGGAAGAAGGTGTGGCCCTGGCAGCTATTCTCGTCAGGTGTGTACGGCTTAATGGAAACTGCAAGAAGTTCTTGTCACAGGCTACTCCAGTGGAACCGTTCCTTCACCTTGTAAGACGAAAAGAACACCGTGCCAAGTGTGCCGCTCTTGAATACTTCCATGAGATTCTTCAAATTCCTCGGTCTGCAGCGAACTCCCTGCTGCAAGAAATAAAGAAGCTAGGAGGCATTGCCATTATGCATACATTGATGGCCTGCCTCCATCAAACTGAACCTGAACACAGGGTTTTAGCAGCTAATCTTCTTCTCCAATTGGATATGCTGGACAAACCAGATGGTAAAAGTGTATTCAGGGATGAAGCAATGGAAGTCCTGTTGGATTCCCTATCATCCCAAGAAA] consensusID : consensus_15145#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 787 fasta sequence [CCGCCCCCACCACCGCTCGCCGCCTTCTCCGCCTCGCCTCGCCGCCGCGTCGACCGCCATGGCTGAGACTGTTGTGCTCAGGGTTGGGATGTCCTGTGAAGGTTGTGTTGGAGCTGTTAAGCGGGTACTGGGAAAGATGCAAGGAGTGGAGTCCTTTGACGTAGACATCAAGGAGCAGAAGGTCACTGTCAAGGGAAATGTTACACCAGATGCCGTTCTTCAGACCGTTTCAAAGACGGGCAAGAAGACCTCGTTCTGGGATGCTGAGCCTGCACCTGTTGAAGCTACTGCTGCTTCATCTTAAAATGTCATTTTATCTCCT-GTGATATGTAAAGGTTGATGTAACAATTTCCCAGTGGAACTGTCTTGTGAGATCACAAAGTTGTCTGTTCTTATGATCATAACTTGAAGCTATTTCAAATAATATCAGACAGCTAGTTACACATATGTACATCTTTGTATTTCTCTATCCTACCAGTATTGGACTATTGGTATGATCAATTTGGTAAAAATACATGGGTCA----AAAAAAAAAAAAAAAAAAAAAAAAAATTGCGGCCGCAAGCTTTTCTTTTTTTTTTTTTTTTGTGATGTGTTATGCAACTATCCATGAAGATTTATGTGATGGGAGGTGCTTGGGGTTAGTGTTTCACCTGTAATTAACATTTGTTTTAGGTCTCTGTATTCTTTGGTCTTATCAGAAAAAGATGGTTTGTGTATAAAGTTTTATGGCTCTTTTTAGAAAAGAAATTGTTAGCTCCCTCGTCGAGGAAGGTAAAAAAAAAAAAAA] [+] EMBL OSR0293A [CCGCCCCCACCACCGCTCGCCGCCTTCTCCGCCTCGCCTCGCCGCCGCGTCGACCGCCATGGCTGAGACTGTTGTGCTCAGGGTTGGGATGTCCTGTGAAGGTTGTGTTGGAGCTGTTAAGCGCGTACTGGGAAAGATGCAAGGAGTGGAGTCCTTTGACGTAGACATCAAGNNGCAGAAGGTCACTGTCAAGGGAAATGTTACACCAGATGCCGTTCTTCAGACCGTTTCAAAGACGGGCAAGAAGACCTCGTTCTGGGATGCTGAGCCTGCACCTGTTGAAGCTACTGCTGCTTCATCTTAAAATGTCATTTTATCTCCT GTGATATGTAAAGGTTGATGTAACA ] [+] EMBL AU198233 [ CCGCTCGCCGCCTTCTCCGCCTCGCCTCGCCGCCGCGTCGACCGCCATGGCTGAGACTGTTGTGCTCAGGGTTGGGATGTCCTGTGAAGGTTGTGTTGGAGCTGTTAAGCGGGTACTGGGAAAGATGCAAGGAGTGGAGTCCTTTGACGTAGACATCAAGGAGCAGAAGGTCACTGTCAAGGGAAATGTTACACCAGATGCCGTTCTTCAGACCGTTTCAAAGACGGGCAAGAAGACCTCGTTCTGGGATGCTGAGCCTGCACCTGTTGAAGCTACTGCTGCTTCATCTTAAAATGTCATTTTATCTCCT GTGATATGTAAAGGTTGATGTAACAATTTCCCAGTGGAACTGTCTTGTGAGATCACAAAGTTGTCTGTTCTTATGATCATAACTTGAAGCTATTTCAAATAATATCAGACAGCTAGTTACACAaaaaaaaaa ] [+] EMBL AU164533 [ CCGCTCGCCGCCTTCTCCGCCTCGCCTCGCCGCCGCGTCGACCGCCATGGCTGAGACTGTTGTGCTCAGGGTTGGGATGTCCTGTGAAGGTTGTGTTGGAGCTGTTAAGCGGGTACTGGGAAAGATGCAAGGAGTGGAGTCCTTTGACGTAGACATCAAGGAGCAGAAGGTCACTGTCAAGGGAAATGTTACACCAGATGCCGTTCTTCAGACCGTTTCAAAGACGGGCAAGAAGACCTCGTTCTGGGATGCTGAGCCTGCACCTGTTGAAGCTACTGCTGCTTCATCTTAAAATGTCATTTTATCTCCT GTGATATGTAAAGGTTGATGTAACAATTTCCCAGTGGAACTGTCTTGTGAGATCACAAAGTTGTCTGTTCTTATGATCATAACTTGAAGCTATTTCAAATAATATCAGACAGCTAGTTACACATATGTACATCTTTGTATTTCTCTATCCTACCAGTATTGGACTATTGGTATGATCAATTTGGTAAAAA ] [+] EMBL AU164637 [ CCGCCTNGCCTNGCCGCCGCGTCGACCGCCATGGCTGAGACTGTTGTGCTCAGGGTTGGGATGTCCTGTGAAGGTTGTGTTGGAGCTGTTAANCGGGTACTGGGAAAGATGCAAGGAGTGGAGTCCTTTGACGTAGACATCAAGGAGCANAAGGTCNCTGTCAAGGGAAATGTTACNCCAGATGCCGTTNTTCAGACCGTTTCAAAGACGGGCAANAAGACCTCGTTNTGGGATGCTGAGCCTGCACCTGTTGAAGCTACTGCTGCTTCATCTTAAAATGTCATTTTATCTCCT GTGATATGTAAAGGTTGATGTAACAATTTCCCAGTGGAACTGTCTTGTGAGATCNCAAAGTTGTCTGTTCTTATGATCATAACTTGAAGCTATTTCAAATAATATCAGACAGCTAGTTACNCATATGTACATCTTTGTATTTCTCTATCCTACCAGTATTGGACTATTGGTATGATCAATTTGGTAAAAATACATGGGTCA AAAAAAAAAAAAAAAAAAAAAAAAAA ] [-] EMBL AW069908 [ gccgaGGTACTGGGAAAGATGCAAGGAGTGGAGTCCTTTGACGGAGACATCAAGGAGCAGAAGGTCACTGTCAAGGGAAATGTTACACCAGAAGCCGTTTTTCAGACCGTTTCAAAGACGGGCAAGAAGACCTCGTTCTGGGATGCTGAGCCTGCACCTGTTGAAGCTACTGCCGCTTCATCTTAAAATGTCATTTTATTTCCTGGGGGTATGTAAAGGTTGATGTAACAATTTCCCAGTGGAACTGTCTTGTGAGATCACAAAGTTGTCTGTTCTTATGATCATAACTTGAAGCTATTTCAAATAATATCAGACAGCTAGTTAC ] [-] EMBL OSA312762 [ AGACGGGCAAGAAGACCTCGTTCTGGGATGCTGAGCCTGCACCTGTTGAAGCTACTGCTGCTTCATCTTAAAATGTCATTTTATCTCCT GTGATATGTAAAGGTTGATGTAACAATTTCCCAGTGGAACTGTCTTGTGAGATCACAAAGTTGTCTGTTCTTATGATCATAACTTGAAGCTATTTCAAATAATATCAGACAGCTAGTTACACATATGTACATCTTTGTATTTCTCTATCCTACCAGTATTGGACTATTGGTATGATCAA ] [+] EMBL AU095447 [ gnCATTTTATCNCCT GTGATATGTAAAGGTTGATGTAACAATTTCCCAGTGGAACTGTCTTGTGAGATCNCAAAGTTGTCTGTTCTTATGATCATAACTTGAAGCTATTTCAAATAATATCAGACAGCTA TTACACATATGTACATCTTTGTATTTCTCTATCCTACCAGTATTGGACTATTGGTATGATCAATTTGGTAAAAATACATGGGTCA AAAAAAAAAAAAAAAAAAAAAAAAAA ] [-] EMBL OSA420733 [ ccCATATGCACATCTTTGTATTTCTCTATCCTACCAGTATTGGACTATTGGTATGATCAATTTGGTAAAAATACATGGGTCATCCCATTAAAAAAAAAAAAAAAAAAAAAGCTTGCGGCCGCAAGCTTTTCTTTTTTTTTTTTTTTTGTGATGTGTTATGCAACTATCCATGAAGATTTATGTGATGGGAGGTGCTTGGGGTTAGTGTTTCACCTGTAATTAACATTTGTTTTAGGTCTCTGTATTCTTTGGTCTTATCAGAAAAAGATGGTTTGTGTATAAAGTTTTATGGCTCTTTTTAGAAAAGAAATTGTTAGCTCCCTCGTCGAGGAAGGTAAAAAAAAAAAAAA] consensusID : consensus_15145#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 607 fasta sequence [CCGTCCCCATCCGAGCGACAGCAGCAACCGCCGTGATCTTCCCCGGATCACGCCGGCCGCGCGGATCTCGTGGCCTACACAACCACCGTTCTTGCTGGTCCATGCACTGAATCGCCGGAGTTCTCGGCGACGACGAGGAGAGAGGCGGCGGCGGCGGCGGCGGTGGCGGGATGTCAATGCCGTGGGCGATGGCGGTGTCGGTGGTGGACAAGGTGTGGGCGGTGCTGGCGGCGTGGGTGTCGTCGTGCCTGACGGCGGCGACCGCCGTCGCGCGAGCGCTCAGGGCGGGGGACATCGGAGTCCTCCACGTCGGCTGATGGCGGGGTCCGTCGTCGGAGTCCTCCACGTCAGGTCAGAGCTTGGAGATGGTTAGGTTTCTTGCGGGGGATGCAAAGCTTTAGTTCTGAGCTTTTCTTTTTTTTTTTTTTGTGATGTGTTATGCAACTATCCATGAAGATTTATGTGATGGGAGGTGCTTGGGGTTAGTGTTTCACCTGTAATTAACATTTGTTTTAGGTCTCTGTATTCTTTGGTCTTATCAGAAAAAGATGGTTTGTGTATAAAGTTTTATGGCTCTTTCTAGAAAAGAAATTGTTAGCTCCCTCGT] [+] EMBL AK062378 [CCGTCCCCATCCGAGCGACAGCAGCAACCGCCGTGATCTTCCCCGGATCACGCCGGCCGCGCGGATCTCGTGGCCTACACAACCACCGTTCTTGCTGGTCCATGCACTGAATCGCCGGAGTTCTCGGCGACGACGAGGAGAGAGGCGGCGGCGGCGGCGGCGGTGGCGGGATGTCAATGCCGTGGGCGATGGCGGTGTCGGTGGTGGACAAGGTGTGGGCGGTGCTGGCGGCGTGGGTGTCGTCGTGCCTGACGGCGGCGACCGCCGTCGCGCGAGCGCTCAGGGCGGGGGACATCGGAGTCCTCCACGTCGGCTGATGGCGGGGTCCGTCGTCGGAGTCCTCCACGTCAGGTCAGAGCTTGGAGATGGTTAGGTTTCTTGCGGGGGATGCAAAGCTTTAGTTCTGAGCTTTTCTTTTTTTTTTTTTTGTGATGTGTTATGCAACTATCCATGAAGATTTATGTGATGGGAGGTGCTTGGGGTTAGTGTTTCACCTGTAATTAACATTTGTTTTAGGTCTCTGTATTCTTTGGTCTTATCAGAAAAAGATGGTTTGTGTATAAAGTTTTATGGCTCTTTCTAGAAAAGAAATTGTTAGCTCCCTCGT] consensusID : consensus_15145#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 605 fasta sequence [ACCACCGCTCGCCGCCTTCTCCGCCTCGCCTCGCCGCCGCGTCGACCGCCATGGCTGAGACTGTTGTGCTCAGGGTTGGGATGTCCTGTGAAGGTTGTGTTGGAGCTGTTAAGCGGGTACTGGGAAAGATGCAAGGAGTGGAGTCCTTTGACGTAGACATCAAGGAGCAGAAGGTCACTGTCAAGGGAAATGTTACACCAGATGCCGTTCTTCAGACCGTTTCAAAGACGGGCAAGAAGACCTCGTTCTGGGATGCTGAGCCTGCACCTGTTGAAGCTACTGCTGCTTCATCTTAAAATGTCATTTTATCTCCTGTGATATGTAAAGG-TTGATGTAACAATTTCCCAGTGGAACTGTCTTGTGAGATCACAAAGTTGTCTGTTCTTATGATCATAACTTGAAGCTATTTCNNATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN] [+] EMBL CA755299 [ACCACCGCTCGCCGCCTTCTCCGCCTCGCCTCGCCGCCGCGTCGACCGCCATGGCTGAGACTGTTGTGCTCAGGGTTGGGATGTCCTGTGAAGGTTGTGTTGGAGCTGTTAAGCGGGTACTGGGAAAGATGCAAGGAGTGGAGTCCTTTGACGTAGACATCAAGGAGCAGAAGGTCACTGTCAAGGGAAATGTTACACCAGATGCCGTTCTTCAGACCGTTTCAAAGACGGGCAAGAAGACCTCGTTCTGGGATGCTGAGCCTGCACCTGTTGAAGCTACTGCTGCTTCATCTTAAAATGTCATTTTATCTCCTGTGATATGTAAAGG TTGATGTAACAATTTCCCAGTGGAACTGTCTTGTGAGATCACAAAGTTGTCTGTTCTTATGATCATAACTTGAAGCTATTTCNNATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN] [+] EMBL OSR1042A [ CGCCTCGNCTCGCCGCCGCGTCGACCGCCATGGCTGAGACTGTTGTGCTCAGGGTTGGGATGTCCTGTGAAGGTTGTGTTGGAGCTGTTAAGCGGGTACTGGGAAAGATGCAAGGAGTGGAGTCCTTTGACGTAGACATCAAGGAGCAGAAGGTCACTGTCAAGGGAAATGNTACACCAGATGCCGTTCTTCAGACCGTTTCAAAGACGGGCAAGAAGACCTCGTTCTGGGATGCTGAGCCTGCACCTGTTGAAGCTACTGCTGCTTCATCTTAAAATGTCATTTTATCTCCTGTGATATGTAAAGGTTTGATGTAACAATTTCCCAGTG ] consensusID : consensus_15145#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 528 fasta sequence [CGCTCGCCGCCTTCTCCGCCTCGCCTCGCCGCCGCGTCGACCGCCATGGCTGAGACTGTTGTGCTCAGGGTTGGGATGTCCTGTGAAGGTTGTGTTGGAGCTGTTAAGCGNGTACTGGGAAAGATGCAAGGAGTGGAGTCCTTTGACGTAGACATCAAGGAGCAGAAGGTCACTGTCAAGGGAAATGTTACACCAGATGCCGTTCTTCAGACCGTTTCAAAGACGGGCAAGAAGACCTCGTTCTGGGATGCTGAGCCTGCACCTGTTGAAGCTACTGCTGCTTCATCTTAAAATGTCATTTTATCTCCTGTGATATGTAAAGGTTGATGTAACAATTTCCCAGTGGAACTGTCTT-GTGAGATCACAAAGTTGTCTGTTCTTATGATCATAACTTG-AAGCTATTTCAAATAATATCAGACAGCTAGTTACACATATGTACATCTTTGTATTTCTCTATCCTACCAGTATTGGGACTATTGGTATGATCAATTTGGTAAAAATACATGGGTCATCACATTGTTTCTGTGG] [+] EMBL AU057937 [CGCTCGCCGCCTTCTCCGCCTCGCCTCGCCGCCGCGTCGACCGCCATGGCTGAGACTGTTGTGCTCAGGGTTGGGATGTCCTGTGAAGGTTGTGTTGGAGCTGTTAAGCGNGTACTGGGAAAGATGCAAGGAGTGGAGTCCTTTGACGTAGACATCAAGGAGCAGAAGGTCACTGTCAAGGGAAATGTTACACCAGATGCCGTTCTTCAGACCGTTTCAAAGACGGGCAAGAAGACCTCGTTCTGGGATGCTGAGCCTGCACCTGTTGAAGCTACTGCTGCTTCATCTTAAAATGTCATTTTATCTCCTGTGATATGTAAAGGTTGATGTAACAATTTCCCAGTGGAACTGTCTT GTGAGATCACAAAGTTGTCTGTTCTTATGATCATAACTTG AAGCTATTTCAAATAATATCAGACAGCTAGTTACACATATGTACATCTTTGTATTTCTCTATCCTACCAGTATTGGGACTATTGGTATGATCAATTTGGTAAAAATACATGGGTCATCACATTGTTTCTGTGG] [+] EMBL OSR0858A [ CCGCCTCGCCTCGCCGCCGCGTCGACCGCCATGGCTGAGACTGTTGTGCTCAGGGTTGGGATGTCCTGTGAAGGTTGTGTTGGAGCTGTTAAGCGNGTACTGGGAAAGATGCAAGGAGTGGAGTCCTTTGACGTAGACATCAAGGAGCAGAAGGTCACTGTCAAGGGAAATGTTACACCAGATGCCGTTCTTCAGACCGTTTCAAAGACGGGCAAGAAGACCTCGTTCTGGGATGCTGAGCCTGCACCTGTTGAAGCTACTGCTGCTTCATCTTAAAATGTCATTTTATCTCCTGTGATATGTAAAGGTTGAT ] [+] EMBL OSR0027A [ CTGTTAAGCGTGTACTGGGAAAGATGCAAGGAGTGGAGTCCTTTGACGTAGACATCAAGGAGCAGAAGGTCACTGTCAAGGGAAATGTTACACCAGATGCCGTTCTTCAGACCGTTTCAAAGACGGGCAAGAAGACCTCGTTCTGGGATGCTGAGCCTGCACCTGTTGAAGCTACTGCTGCTTCATCTTAAAATGTCATTTTATCTCCTGTGATATGTAAAGGTTGATGTAACAATTTCCCAGTNGAACTGTCTTGGTGAGATCACAAAGTTGTCTGTTCTTATGATCATAACTTGAAAGCTATTTCAAATAATATCAGACAGCTAGTT ] [+] EMBL CF320045 [ TCCTTTGACGTAGACATCAAGGACCAGAAGGTCACTGTCAAGGGAAATGTTACACCAGATGCCGTTCTTCAGACCGTTTCAAAGACGGGCAAGAAGACCTCGTTCTGGGATGCTGAGCCTGCACCTGTTGAAGCTACTGCTGCTTCATCTTAAAATGTCATTTTATCTCCTGTGATATGTAAAGGTTGATGGAATACAATCTCAGCGGAACTGTCTT GTGAGATCACAAAGTTGTCTGTTCTTATGATCATAACTCG AAGCTATTTCAAATAATATCAGACAGCT ] consensusID : consensus_15145#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 427 fasta sequence [CTNGCCTTGCCGCCGCGTCGACCGCCATGGCTGAGACTGTTGTGCTCAGGGTTGGGATGTCCTGTGAAGGTTGTGTTGGAGCTGTTAAGCGGGTACTGGGAAAGATGCAAGGAGTGGAGTCCTTTGACGTAGACATCAAGGAGCAGAAGGTCNCTGTCAAGGGAAATGTTACACCAGATGCCGTTNTTCAGACCGTTTCAAAGACGGGCAAGAAGACCTCGTTNTGGGATGCTGAGCCTGCACCTGTTGAAGCTACTGCTGCTTCATCTTAAAATGTCATTTTATCTCCTGTGATATGTAAAGGTTGATGTAACAATTTCCCAGTGGAACTGTTCTTGTGAGATCACAAAGTTGTGCTGTTCTTATGATCATAACTTGAAGCTATTTCAAATAATATCAGACAGCTAGTTTCCCAAAAAAAAAAAAA] [+] EMBL AU198234 [CTNGCCTTGCCGCCGCGTCGACCGCCATGGCTGAGACTGTTGTGCTCAGGGTTGGGATGTCCTGTGAAGGTTGTGTTGGAGCTGTTAAGCGGGTACTGGGAAAGATGCAAGGAGTGGAGTCCTTTGACGTAGACATCAAGGAGCAGAAGGTCNCTGTCAAGGGAAATGTTACACCAGATGCCGTTNTTCAGACCGTTTCAAAGACGGGCAAGAAGACCTCGTTNTGGGATGCTGAGCCTGCACCTGTTGAAGCTACTGCTGCTTCATCTTAAAATGTCATTTTATCTCCTGTGATATGTAAAGGTTGATGTAACAATTTCCCAGTGGAACTGTTCTTGTGAGATCACAAAGTTGTGCTGTTCTTATGATCATAACTTGAAGCTATTTCAAATAATATCAGACAGCTAGTTTCCCAAAAAAAAAAAAA] consensusID : consensus_15145#6 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 133 fasta sequence [CCACAGAAACAATGTGATGACCCATGTATTTTGACCAAATTGATCATACCAATAGTACAATACTAGTAGGAATAGAGAAATTACAAAGATGTACATATGTGTAACTAGCTATCTGATATAATTATGAATTAGC] [+] EMBL OS38152 [CCACAGAAACAATGTGATGACCCATGTATTTTGACCAAATTGATCATACCAATAGTACAATACTAGTAGGAATAGAGAAATTACAAAGATGTACATATGTGTAACTAGCTATCTGATATAATTATGAATTAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15145#1 CCGCCCCCACCACCGCTCGCCGCCTTCTCCGCCTCGCCTCGCCGCCGCGTCGACCGCCAT 60 consensus_15145#4 -------------CGCTCGCCGCCTTCTCCGCCTCGCCTCGCCGCCGCGTCGACCGCCAT 47 consensus_15145#3 --------ACCACCGCTCGCCGCCTTCTCCGCCTCGCCTCGCCGCCGCGTCGACCGCCAT 52 consensus_15145#5 --------------------------------CTNGCCTTGCCGCCGCGTCGACCGCCAT 28 consensus_15145#0 ------------------------------------------------------------ consensus_15145#6 ------------------------------------------------------------ consensus_15145#2 ------------------------------------------------------------ consensus_15145#1 GGCTGAGACTGTTGTGCTCAGGGTTGGGATGTCCTGTGAAGGTTGTGTTGGAGCTGTTAA 120 consensus_15145#4 GGCTGAGACTGTTGTGCTCAGGGTTGGGATGTCCTGTGAAGGTTGTGTTGGAGCTGTTAA 107 consensus_15145#3 GGCTGAGACTGTTGTGCTCAGGGTTGGGATGTCCTGTGAAGGTTGTGTTGGAGCTGTTAA 112 consensus_15145#5 GGCTGAGACTGTTGTGCTCAGGGTTGGGATGTCCTGTGAAGGTTGTGTTGGAGCTGTTAA 88 consensus_15145#0 ------------------------------------------------------------ consensus_15145#6 ------------------------------------------------------------ consensus_15145#2 ------------------------------------------------------------ consensus_15145#1 GCGGGTACTGGGAAAGATGCAAGGAGTGGAGTCCTTTGACGTAGACATCAAGGAGCAGAA 180 consensus_15145#4 GCGNGTACTGGGAAAGATGCAAGGAGTGGAGTCCTTTGACGTAGACATCAAGGAGCAGAA 167 consensus_15145#3 GCGGGTACTGGGAAAGATGCAAGGAGTGGAGTCCTTTGACGTAGACATCAAGGAGCAGAA 172 consensus_15145#5 GCGGGTACTGGGAAAGATGCAAGGAGTGGAGTCCTTTGACGTAGACATCAAGGAGCAGAA 148 consensus_15145#0 ------------------------------------CGGCACGAGCAN-GTCTCGANNTC 23 consensus_15145#6 ------------------------------------------------------------ consensus_15145#2 -----------------------------------------CCGTCCCCATCCGAGCGAC 19 consensus_15145#1 GGTCACTGTCAAGGGAAATGTTACACCAGATGCCGTTCTTCAGACCGTTTCAAAGACGGG 240 consensus_15145#4 GGTCACTGTCAAGGGAAATGTTACACCAGATGCCGTTCTTCAGACCGTTTCAAAGACGGG 227 consensus_15145#3 GGTCACTGTCAAGGGAAATGTTACACCAGATGCCGTTCTTCAGACCGTTTCAAAGACGGG 232 consensus_15145#5 GGTCNCTGTCAAGGGAAATGTTACACCAGATGCCGTTNTTCAGACCGTTTCAAAGACGGG 208 consensus_15145#0 AGCNGANGTCANNGGAAATGTNACNCCAGATGCCGTTCTTCAGACCGTTTCAAAGACGGG 83 consensus_15145#6 ------------------------------------------------------------ consensus_15145#2 AGCAGCAACCGCCGTGATC--TTCCCCGGATCACGCCGGCCGCGCGGATCTCGTGGCCTA 77 consensus_15145#1 CAAGAAGACCTCGTTCTGGGATGCTGAGCCTGCACCTGTTGAAGCTACTGCTGCTTCATC 300 consensus_15145#4 CAAGAAGACCTCGTTCTGGGATGCTGAGCCTGCACCTGTTGAAGCTACTGCTGCTTCATC 287 consensus_15145#3 CAAGAAGACCTCGTTCTGGGATGCTGAGCCTGCACCTGTTGAAGCTACTGCTGCTTCATC 292 consensus_15145#5 CAAGAAGACCTCGTTNTGGGATGCTGAGCCTGCACCTGTTGAAGCTACTGCTGCTTCATC 268 consensus_15145#0 CAAGAAGACCTCGTTCTGGGATGCTGAGCCTGCACCTGTTGAAGCTACTGCTGCTTCATC 143 consensus_15145#6 ------------------------------------------------------------ consensus_15145#2 CACAACCACCGTTCTTGCTGGTCCATGCACTGAATCGCCGGAGTTCTCGGCGACGACGAG 137 consensus_15145#1 TTAAAATGTCATTTTATCTCCTGTGATATGTAAAGGTTGATGTAACAATTTCCCAGTGGA 360 consensus_15145#4 TTAAAATGTCATTTTATCTCCTGTGATATGTAAAGGTTGATGTAACAATTTCCCAGTGGA 347 consensus_15145#3 TTAAAATGTCATTTTATCTCCTGTGATATGTAAAGGTTGATGTAACAATTTCCCAGTGGA 352 consensus_15145#5 TTAAAATGTCATTTTATCTCCTGTGATATGTAAAGGTTGATGTAACAATTTCCCAGTGGA 328 consensus_15145#0 TTAAAATGTCATTTTATCTCCTGTGATATGTAAAGGTTGATGTAACAATTTCCCAGTGGA 203 consensus_15145#6 ----------------------------------------------------CCACAGAA 8 consensus_15145#2 GAGAGAGGCGGCGGCGGCGGCGGCGGTGGCGGGATGTCAATGCCGTGGGCGATGGCGGTG 197 * consensus_15145#1 ACTGT-CTTGTGAGATCACAAAGTTGT-CTGTTCTTAT-GAT--CATAACTTGAAGCTAT 415 consensus_15145#4 ACTGT-CTTGTGAGATCACAAAGTTGT-CTGTTCTTAT-GAT--CATAACTTGAAGCTAT 402 consensus_15145#3 ACTGT-CTTGTGAGATCACAAAGTTGT-CTGTTCTTAT-GAT--CATAACTTGAAGCTAT 407 consensus_15145#5 ACTGTTCTTGTGAGATCACAAAGTTGTGCTGTTCTTAT-GAT--CATAACTTGAAGCTAT 385 consensus_15145#0 ACTGT-CTTGTGAGATCACAAAGTTGT-CTGTTCTTAT-GAT--CATAACTTGAAGCTAT 258 consensus_15145#6 ACAAT------GTGATGACCCATGTATTTTGACCAAATTGAT--CATACCAATAGTACAA 60 consensus_15145#2 TCGGT-GGTGGACAAGGTGTGGGCGGTGCTGGCGGCGTGGGTGTCGTCGTGCCTGACGGC 256 * * * * ** * * * * * consensus_15145#1 TTCAAATAATATCAGACAGCTAGTTACACATATGTACATCTTTGTATTTCTC--TATCCT 473 consensus_15145#4 TTCAAATAATATCAGACAGCTAGTTACACATATGTACATCTTTGTATTTCTC--TATCCT 460 consensus_15145#3 TTCNNATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--NNNNNN 465 consensus_15145#5 TTCAAATAATATCAGACAGCTAGTTTCCCAAAAAAAAAAAAA------------------ 427 consensus_15145#0 TTCAAATAATATCAGACAGCTAGTTACACATATGTACATCTTTGTATTTCTC--TATCCT 316 consensus_15145#6 TACTAGTAGGAATAGAGA---AATTACAAAGATGTACATATGTGTAACTAGC--TATCTG 115 consensus_15145#2 GGCGACCGCCGTCGCGCGAGCGCTCAGGGCGGGGGACATCGGAGTCCTCCACGTCGGCTG 316 * consensus_15145#1 ACCAGTATTGG-ACTATTGGTATGATCAATTTGGTAAAAATACATGGGTCAAAAAAAAAA 532 consensus_15145#4 ACCAGTATTGGGACTATTGGTATGATCAATTTGGTAAAAATACATGGGTCATCACATTGT 520 consensus_15145#3 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 525 consensus_15145#5 ------------------------------------------------------------ consensus_15145#0 ACCAGTATTGG-ACTATTGGTATGATCAATTTGAGACACCAAAAAGTGGCCTGCGGTGCT 375 consensus_15145#6 ATATAATTATGAATTAGC------------------------------------------ 133 consensus_15145#2 ATGGCGGGGTCCGTCGTCGGAGTCCTCCACGTCAGGTCAGAGCTTGGAGATGGTTAGGTT 376 consensus_15145#1 AAAAAAAAAAAAAAAAATTGCGGCCGCAAGCTTTTCTTTTTTTTTTTTTTTTGTGATGTG 592 consensus_15145#4 TTCTGTGG---------------------------------------------------- 528 consensus_15145#3 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 585 consensus_15145#5 ------------------------------------------------------------ consensus_15145#0 TCCATTGACCCCGACATCAGCATCAATAGCACTCATTGAGATCTTGGTGACAGCATTCGA 435 consensus_15145#6 ------------------------------------------------------------ consensus_15145#2 TCTTGCGGGGGATGCAAAGCTTTAGTTCTGAGCTTTTCTTTTTTTTTTTTTTGTGATGTG 436 consensus_15145#1 TTATGCAACTATCCATGAAGATTTATGTGATGGGAGGTGCTTGGGGTTAGTGTTTCACCT 652 consensus_15145#4 ------------------------------------------------------------ consensus_15145#3 NNNNNNNNNNNNNNNNNNNN---------------------------------------- 605 consensus_15145#5 ------------------------------------------------------------ consensus_15145#0 CTATGTAACAAACAACGTCCACTTGGGTGCCATCAGCTCTCCTCATATTCTATCTAAGCT 495 consensus_15145#6 ------------------------------------------------------------ consensus_15145#2 TTATGCAACTATCCATGAAGATTTATGTGATGGGAGGTGCTTGGGGTTAGTGTTTCACCT 496 consensus_15145#1 ----GTAATTAACATTTGTTTTAGGTCTCTGTATTCTTTGGTCTTATCAGAAAAAGATGG 708 consensus_15145#4 ------------------------------------------------------------ consensus_15145#3 ------------------------------------------------------------ consensus_15145#5 ------------------------------------------------------------ consensus_15145#0 TGTTGATGTTGCAAGGAATAACAACTTGGAAGAAGGTGTGGCCCTGGCAGCTATTCTCGT 555 consensus_15145#6 ------------------------------------------------------------ consensus_15145#2 ----GTAATTAACATTTGTTTTAGGTCTCTGTATTCTTTGGTCTTATCAGAAAAAGATGG 552 consensus_15145#1 TTTGTGTATAAAGTTTTATGGCTCTTTTTAGAAAAGAAATTGTTAGCTCCCTCGTCGAGG 768 consensus_15145#4 ------------------------------------------------------------ consensus_15145#3 ------------------------------------------------------------ consensus_15145#5 ------------------------------------------------------------ consensus_15145#0 CAGGTGTGTACGGCTTAATGGAAACTGCAAGAAGTTCTTGTCACAGGCTACTCCAGTGGA 615 consensus_15145#6 ------------------------------------------------------------ consensus_15145#2 TTTGTGTATAAAGTTTTATGGCTCTTTCTAGAAAAGAAATTGTTAGCTCCCTCGT----- 607 consensus_15145#1 AAGGTAAAAAAAAAAAAAA----------------------------------------- 787 consensus_15145#4 ------------------------------------------------------------ consensus_15145#3 ------------------------------------------------------------ consensus_15145#5 ------------------------------------------------------------ consensus_15145#0 ACCGTTCCTTCACCTTGTAAGACGAAAAGAACACCGTGCCAAGTGTGCCGCTCTTGAATA 675 consensus_15145#6 ------------------------------------------------------------ consensus_15145#2 ------------------------------------------------------------ consensus_15145#1 ------------------------------------------------------------ consensus_15145#4 ------------------------------------------------------------ consensus_15145#3 ------------------------------------------------------------ consensus_15145#5 ------------------------------------------------------------ consensus_15145#0 CTTCCATGAGATTCTTCAAATTCCTCGGTCTGCAGCGAACTCCCTGCTGCAAGAAATAAA 735 consensus_15145#6 ------------------------------------------------------------ consensus_15145#2 ------------------------------------------------------------ consensus_15145#1 ------------------------------------------------------------ consensus_15145#4 ------------------------------------------------------------ consensus_15145#3 ------------------------------------------------------------ consensus_15145#5 ------------------------------------------------------------ consensus_15145#0 GAAGCTAGGAGGCATTGCCATTATGCATACATTGATGGCCTGCCTCCATCAAACTGAACC 795 consensus_15145#6 ------------------------------------------------------------ consensus_15145#2 ------------------------------------------------------------ consensus_15145#1 ------------------------------------------------------------ consensus_15145#4 ------------------------------------------------------------ consensus_15145#3 ------------------------------------------------------------ consensus_15145#5 ------------------------------------------------------------ consensus_15145#0 TGAACACAGGGTTTTAGCAGCTAATCTTCTTCTCCAATTGGATATGCTGGACAAACCAGA 855 consensus_15145#6 ------------------------------------------------------------ consensus_15145#2 ------------------------------------------------------------ consensus_15145#1 ------------------------------------------------------------ consensus_15145#4 ------------------------------------------------------------ consensus_15145#3 ------------------------------------------------------------ consensus_15145#5 ------------------------------------------------------------ consensus_15145#0 TGGTAAAAGTGTATTCAGGGATGAAGCAATGGAAGTCCTGTTGGATTCCCTATCATCCCA 915 consensus_15145#6 ------------------------------------------------------------ consensus_15145#2 ------------------------------------------------------------ consensus_15145#1 ----- consensus_15145#4 ----- consensus_15145#3 ----- consensus_15145#5 ----- consensus_15145#0 AGAAA 920 consensus_15145#6 ----- consensus_15145#2 ----- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||