These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15178#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 16 consensus length = 1217 fasta sequence [CACAAGAGCAGGGCAGTAACTTCTGTGAGAGATGGAGTACTCTTACAGCTACAGGTTCATGCTTGTATGCTCTGTTCTTGTACTGTGCCTTAATACTCGGGGTGCGAGATGCCAGTTATCCGACGATTTCTACGACTACATATGTCCTGATGTGTACACCGTTGTCCAGCAGCATGTTTATGCTGCCATGAGGACTGAGATGAGGATGGGTGCCTCCCTCCTAAGGCTCCATTTCCATGACTGCTTTGTCAATGGGTGTGACGGTTCCATCCTTCTGGACGGTGACGACGGCGAGAAATTTGCACTTCCCAACAAGAACTCTGTCAGAGGG-TTCGAAGTCATTGACGCGATAAAGGAAGATCTCGAGAACATCT-GCCCTGAAGTTGTTTCCTGCGCCGACATTGTAGCCCTTGCAGCTGGCTATGGAGTACTATTTAGTGGAGGCCCTTACTATGACGTTCTTCTCGGTAGAAGGGATGGTCTTGTCGCAAATCAATCAGGAGCTGACAACGGCCTCCCTTCACCGTTCGAACCCATCAAATCGATCATACAGAAGTTCAATGATGTCGGCCTCGACACAACCGATGTTGTCGTCCTATCAGGAGGGCACACGATCGGACGAGCCCGGTGCACGCTGTTCAGCAACCGGTTGTCGACCACCTCAAGCTCAGCCGACCCGACGCTGGACGCCACCATGGCCGCCAACCTCCAGAGCCTCTGTGCCGGTGGAGACGGCAACGAGACCACCGTGCTGGACATCACCTCCGCCTACGTTTTCGACAACCGCTACTACCAGAACCTCCTCAATCAGAAAGGCCTCCTGTCCTCCGACCAGGGCCTCTTCTCCAGCGACGACGGCATCGCCAACACCAAGGAGCTGGTGGAGACTTACAGCGCAGATGCCCACAAGTTCTTCTGGGATTTTGGCAGATCCATGGTGAAGATGGGCAACATCAGCCCACTCACCGGTGACGACGGCCAGATTCGCAAGAACTGCAGGGTTGTTAATTAACTGAGCTTCAGTGTGTTGAAAAGATAGTAAATTTCTTGTACTTTTCACAAGGCGATTGAGACGATGTGTGTTATGTTTTGATGTTACATGAATGCTTGAAGAAGCAGAAGTAATAACGATGTGATTGTGACTAGTTTGTGAACTGA-TC-GTCAAC--AAAGATGTGATCCATTGGAAA-AAAAGGACTGAATGTATGTGCCTTAAAAAA] [+] EMBL CF278566 [CACAAGAGCAGGGCAGTAACTTCTGTGAGAGATGGAGTACTCTTACAGCTACAGGTTCATGCTTGTATGCTCTGTTCTTGTACTGTGCCTTAATACTCGGGGTGCGAGATGCCAGTTATCCGACGATTTCTACGACTACATATGTCCTGATGTGTACACCGTTGTCCAGCAGCATGTTTATGCTGCCATGAGGACTGAGATGAGGATGGGTGCCTCCCTCCTAAGGCTCCATTTCCATGACTGCTTTGTCAATGGGTGTGACGGTTCCATCCTTCTGGACGGTGACGACGGCGAGAAATTTGCACTTCCCAACAAGAACTCTGTCAGAGGG TTCGAAGTCATTGACGCGATAAAGGAAGATCTCGAGAACATCT GCCCTGAAGTTGTTTCCTGCGCCGACATTGTAGCCCTTGCAGCTGGCTATGGAGTACTATTTAGTGGAGGCCCTTACTATGACGTTCTTCTCGGTAGAAGGGATGGTCTTGTCGCAAATCAATCAGGAGCTGACAACGGCCTCCCTTCACCATTCGAACCCATCAAATCGATCATACAGAAGTTCAATGATGTCGGCCTCGAC CAACCGATGTTGTCGTCCTATCAGGAGGGCACACGATCGGACGAGCCCGGTGC ] [+] EMBL AK099448 [CACAAGAGCAGGGCAGTAACTTCTGTGAGAGATGGAGTACTCTTACAGCTACAGGTTCATGCTTGTATGCTCTGTTCTTGTACTGTGCCTTAATACTCGGGGTGCGAGATGCCAGTTATCCGACGATTTCTACGACTACATATGTCCTGATGTGTACACCGTTGTCCAGCAGCATGTTTATGCTGCCATGAGGACTGAGATGAGGATGGGTGCCTCCCTCCTAAGGCTCCATTTCCATGACTGCTTTGTCAATGGGTGTGACGGTTCCATCCTTCTGGACGGTGACGACGGCGAGAAATTTGCACTTCCCAACAAGAACTCTGTCAGAGGG TTCGAAGTCATTGACGCGATAAAGGAAGATCTCGAGAACATCT GCCCTGAAGTTGTTTCCTGCGCCGACATTGTAGCCCTTGCAGCTGGCTATGGAGTACTATTTAGTGGAGGCCCTTACTATGACGTTCTTCTCGGTAGAAGGGATGGTCTTGTCGCAAATCAATCAGGAGCTGACAACGGCCTCCCTTCACCGTTCGAACCCATCAAATCGATCATACAGAAGTTCAATGATGTCGGCCTCGACACAACCGATGTTGTCGTCCTATCAGGAGGGCACACGATCGGACGAGCCCGGTGCACGCTGTTCAGCAACCGGTTGTCGACCACCTCAAGCTCAGCCGACCCGACGCTGGACGCCACCATGGCCGCCAACCTCCAGAGCCTCTGTGCCGGTGGAGACGGCAACGAGACCACCGTGCTGGACATCACCTCCGCCTACGTTTTCGACAACCGCTACTACCAGAACCTCCTCAATCAGAAAGGCCTCCTGTCCTCCGACCAGGGCCTCTTCTCCAGCGACGACGGCATCGCCAACACCAAGGAGCTGGTGGAGACTTACAGCGCAGATGCCCACAAGTTCTTCTGGGATTTTGGCAGATCCATGGTGAAGATGGGCAACATCAGCCCACTCACCGGTGACGACGGCCAGATTCGCAAGAACTGCAGGGTTGTTAATTAACTGAGCTTCAGTGTGTTGAAAAGATAGTAAATTTCTTGTACTTTTCACAAGGCGATTGAGACGATGTGTGTTATGTTTTGATGTTAAATGAATGCTTGAAGAAGCAGAAGTAATAACGATGTGATTGTGACTAGTTTGTGAACTGA TC GTCAAC AAAGATGT ] [+] EMBL CF276284 [CACAAGAGCAGGGCAGTAACTTCTGTGAGAGATGGAGTACTCTTACAGCTACAGGTTCATGCTTGTATGCTCTGTTCTTGTACTGTGCCTTAATACTCGGGGTGCGAGATGCCAGTTATCCGACGATTTCTACGACTACATATGTCCTGATGTGTACACCGTTGTCCAGCAGCATGTTTATGCTGCCATGAGGACTGAGATGAGGATGGGTGCCTCCCTCCTAAGGCTCCATTTCCATGACTGCTTTGTCAATGGGTGTGACGGTTCCATCCTTCTGGACGGTGACGACGGCGAGAAATTTGCACTTCCCAACAAGAACTCTGTCAGAGGGTTTCGAAGTCATTGACGCGATAAAGGAAGATCTCGAGAACATCTNGCCCCGAAGTTGTTTCCTGCGCCGACATTGTAGCCCTTGCAGCTGGCTATGGAGTACTATTTAGTGGAGGCCCTTACTATGACGTT ] [+] EMBL CF279114 [ ACAAGAGCAGGGCAGTAACTTCTGTGAGAGATGGAGTACTCTTACAGCTACAGGTTCATGCTTGTATGCTCTGTTCTTGTACTGTGCCTTAATACTCGGGGTGCGAGATGCCAGTTATCCGACGATTTCTACGACTACATATGTCCTGATGTGTACACCGTTGTCCAGCAGCATGTTTATGCTGCCATGAGGACTGAGATGAGGATGGGTGCCTCCCTCCTAAGGCTCCATTTCCATGACTGCTTTGTCAATGGGTGTGACGGTTCCATCCTTCTGGACGGTGACGACGGCGAGAAATTTGCACTTCCCAACAAGAACTCTGTCAGAGGG TTCGAAGTCATTGACGCGATAAAGGAAGATCTCGAGAACATCT GCCCTGAAGTTGTTTCCTGCGCCGACATTGTAGCCCTTGCAGCTGGCTATGGAGTACTATTTAGTGGAGGCCCTTACTATGACGTTCTTCTCGGTAGAAGGGATGGTCTTGTCGCAAATCAATCAGGAGCTGACAACGGCCTCCCTTCACCGTTCGAACCCATCAAATCGATCATACAGAAGTTCAATGATGTCGGCCTCGAC CAACCGATGGTGTCGTCCTATCAGGAGGGCACACGATCGGACGAGCCCGGTGCACG ] [+] EMBL CB648691 [ CAGTAACTTCTGTGAGAGATGGAGTACTCTTACAGCTACAGGTTCATGCTTGTATGCTCTGTTCTTGTACTGTGCCTTAATACTCGGGGTGCGAGATGCCAGTTATCCGACGATTTCTACGACTACATATGTCCTGATGTGTACACCGTTGTCCAGCAGCATGTTTATGCTGCCATGAGGACTGAGATGAGGATGGGTGCCTCCCTCCTAAGGCTCCATTTCCATGACTGCTTTGTCAATGGGTGTGACGGTTCCATCCTTCTGGACGGTGACGACGGCGAGAAATTTGCACTTCCCAACAAGAACTCTGTCAGAGGG TTCGAAGTCATTGACGCGATAAAGGAAGATCTCGAGAACATCT GCCCTGAAGTTGTTTCCTGCGCCGACATTGTAGCCCTTGCAGCTGGCTATGGAGTACTATTTAGTGGAGGCCCTTACTATGACGTTCTTCTCGGTAGAAGGGATGGTCTTGTCGCAAATCAATCAGGAGCTGACAACGGCCTCCCTTCACCGTTCGAACCCATCAAATCGATCATACAGAAGTTCAATGATGTCGGCCTCGACACAACCGATGTTGTCGTCCTATCAGGAGGGCACACGATCGGACGAGCCCGGTGCACGCTGTTCAGCAACCGGTTGTCGACCACCTCAAGCTCAGCCGACCCGACGCTGGACGCCACCATGGCCGCCAACCTCCAGAGCCTCTGTGCCGGTGGAGACGGCAACGAGACCACCGTGCTGGACATCACCTCCGCCTACGTTTTCGACAACCGCTACTACCAGA ] [+] EMBL CB659517 [ AGTAACTTCTGTGAGAGATGGAGTACTCTTACAGCTACAGGTTCATGCTTGTATGCTCTGTTCTTGTACTGTGCCTTAATACTCGGGGTGCGAGATGCCAGTTATCCGACGATTTCTACGACTACATATGTCCTGATGTGTACACCGTTGTCCAGCAGCATGTTTATGCTGCCATGAGGACTGAGATGAGGATGGGTGCCTCCCTCCTAAGGCTCCATTTCCATGACTGCTTTGTCAATGGGTGTGACGGTTCCATCCTTCTGGACGGTGACGACGGCGAGAAATTTGCACTTCCCAACAAGAACTCTGTCAGAGGG TTCGAAGTCATTGACGCGATAAAGGAAGATCTCGAGAACATCT GCCCTGAAGTTGTTTCCTGCGCCGACATTGTAGCCCTTGCAGCTGGCTATGGAGTACTATTTAGTGGAGGCCCTTACTATGACGTTCTTCTCGGTAGAAGGGATGGTCTTGTCGCAAATCAATCAGGAGCTGACAACGGCCTCCCTTCACCGTTCGAACCCATCAAATCGATCATACAGAAGTTCAATGATGTCGGCCTCGACACAACCGATGTTGTCGTCCTATCAGGAGGGCACACGATCGGACGAGCCCGGTGCACGCTGTTCAGCAACCGGTTGTCGACCACCTCAAGCTCAGCCGACCCGACGCTGGACGCCACCATGGCCGCCAACCTCCAGAGCCTCTGTGCCGGTGGAGACGGCAACGAGACCACCGT ] [+] EMBL CB644883 [ AGTAACCTCTGTGAGAGATGGAGTACTCTTACAGCTACAGGTTCATGCTTGTATGCTCTGTTCTTGTACTGTGCCTTAATACTCGGGGTGCGAGATGCCAGTTATCCGACGATTTCTACGACTACATATGTCCTGATGTGTACACCGTTGTCCAGCAGCATGTTTATGCTGCCATGAGGACTGAGATGAGGATGGGTGCCTCCCTCCTAAGGCTCCATTTCCATGACTGCTTTGTCAATGGGTGTGACGGTTCCATCCTTCTGGACGGTGACGACGGCGAGAAATTTGCACTTCCCAACAAGAACTCTGTCAGAGGG TTCGAAGTCATTGACGCGATAAAGGAAGATCTCGAGAACATCT GCCCTGAAGTTGTTTCCTGCGCCGACATTGTAGCCCTTGCAGCTGGCTATGGAGTACTATTTAGTGGAGGCCCTTACTATGACGTTCTTCTCGGTAGAAGGGATGGTCTTGTCGCAAATCAATCAGGAGCTGACAACGGCCTCCCTTCACCGTTCGAACCCATCAAATCGATCATACAGAAGTTCAATGATGTCGGCCTCGACACAACCGATGTTGTCGTCCTATCAGGAGGGCACACGATCGGACGAGCCCGGTGCACGCTGTTCAGCAACCGGTTGTCGACCACCTCAAGCTCAGCCGACCCGACGCTGGACGCCACCATGGCCGCCAACCTCCAGAGCCTCTGTGCCGGTGGAGACGGCAACGAGACCACCGTGCTGGACATCACCTCCGCCTACGTTTTCGACAACCGCTACTACCAGAAC ] [+] EMBL AK061206 [ TGTGAGAGATGGAGTACTCTTACAGCTACAGGTTCATGCTTGTATGCTCTGTTCTTGTACTGTGCCTTAATACTCGGGGTGCGAGATGCCAGTTATCCGACGATTTCTACGACTACATATGTCCTGATGTGTACACCGTTGTCCAGCAGCATGTTTATGCTGCCATGAGGACTGAGATGAGGATGGGTGCCTCCCTCCTAAGGCTCCATTTCCATGACTGCTTTGTCAATGGGTGTGACGGTTCCATCCTTCTGGACGGTGACGACGGCGAGAAATTTGCACTTCCCAACAAGAACTCTGTCAGAGGG TTCGAAGTCATTGACGCGATAAAGGAAGATCTCGAGAACATCT GCCCTGAAGTTGTTTCCTGCGCCGACATTGTAGCCCTTGCAGCTGGCTATGGAGTACTATTTAGTGGAGGCCCTTACTATGACGTTCTTCTCGGTAGAAGGGATGGTCTTGTCGCAAATCAATCAGGAGCTGACAACGGCCTCCCTTCACCGTTCGAACCCATCAAATCGATCATACAGAAGTTCAATGATGTCGGCCTCGACACAACCGATGTTGTCGTCCTATCAGGAGGGCACACGATCGGACGAGCCCGGTGCACGCTGTTCAGCAACCGGTTGTCGACCACCTCAAGCTCAGCCGACCCGACGCTGGACGCCACCATGGCCGCCAACCTCCAGAGCCTCTGTGCCGGTGGAGACGGCAACGAGACCACCGTGCTGGACATCACCTCCGCCTACGTTTTCGACAACCGCTACTACCAGAACCTCCTCAATCAGAAAGGCCTCCTGTCCTCCGACCAGGGCCTCTTCTCCAGCGACGACGGCATCGCCAACACCAAGGAGCTGGTGGAGACTTACAGCGCAGATGCCCACAAGTTCTTCTGGGATTTTGGCAGATCCATGGTGAAGATGGGCAACATCAGCCCACTCACCGGTGACGACGGCCAGATTCGCAAGAACTGCAGGGTTGTTAATTAACTGAGCTTCAGTGTGTTGAAAAGATAGTAAATTTCTTGTACTTTTCACAAGGCGATTGAGACGATGTGTGTTATGTTTTGATGTTACATGAATGCTTGAAGAAGCAGAAGTAATAACGATGTGATTGTGACTAGTTTGTGAACTGA TC GTCAAC AAAGATGT ] [+] EMBL CB676583 [ GTGAGATATGGAGTACTCTTACAGCTACAGGTTCATGCTTGTATGCTCTGTTCTTGTACTGTGCCTTAATACTCGGGCTGCGAGATGCCAGTTATCCGACGATTTCTACGACTACATATGTCCTGATGTGTACACCGTTGTCCAGCAGCATGTTTATGCTGCCATGAGGACTGAGATGAGGATGGGTGCCTCCCTCCTAAGGCTCCATTTCCATGACTGCTTTGTCAATGGGTGTGACGGTTCCATCCTTCTGGACGGTGACGACGGCGAGAAATTTGCACTTCCCAACAAGAACTCTGTCAGAGGG TTCGAAGTCATTGACGCGATAAAGGAAGATCTCGAGAACATCT GCCCTGAAGTTGTTTCCTGCGCCGACATTGTAGCCCTTGCAGCTGGCTATGGAGTACTATTTAGTGGAGGCCCTTACTATGACGTTCTTCTCGGTAGAAGGGATGGTCTTGTCGCAAATCAATCAGGAGCTGACAACGGCCTCCCTTCACCGTTCGAACCCATCAAATCGATCATACAGAAGTTCAATGATGTCGGCCTCGACACAACCGATGTTGTCGTCCTATCAGGAGGGCACACGATCGGACGAGCCCGGTGCACGCTGTTCAGCAACCGGTTGTCGACCACCTCAAGCTCAGCCGACCCGACGCTGGACGCCACCATGGCCGCCAACCTCCAGAGCCTCTGTGCCGGTGGAGACGGCAACGAGACCACCGTGCTGGACATCACCTCCGCCTACGTTTTCGACAACCGCTACTACCAGAAC ] [+] EMBL OSPRXRPAA [ TGGAGTACTCTTACAGCTACAGGTTCATGCTTGTATGCTCTGTTCTTGTACTGTGCCTTAATACTCGGGGTGCGAGATGCCAGTTATCCGACGATTTCTACGACTACATATGTCCTGATGTGTACACCGTTGTCCAGCAGCATGTTTATGCTGCCATGAGGACTGAGATGAGGATGGGTGCCTCCCTCCTAAGGCTCCATTTCCATGACTGCTTTGTCAATGGGTGTGACGGTTCCATCCTTCTGGACGGTGACGACGGCGAGAAATTTGCACTTCCCAACAAGACCTCTGTCAGAGGG TTCGAAGTCATTGACGCGATAAAGGAAGATCTCGAGAACATCT GCCCTGAAGTTGTTTCCTGCGCCGACATTGTAGCCCTTGCAGCTGGCTATGGAGTACTATTTAGTGGAGGCCCTTACTATGACGTTCTTCTCGGTAGAAGGGATGGTCTTGTCGCAAATCAATCAGGAGCTGACAACGGCCTCCCTTCACCGTTCGAACCCATCAAATCGATCATACAGAAGTTCAATGATGTCGGCCTCGACACAACCGATGTTGTCGTCCTATCAGGAGGGCACACGATCGGACGAGCCCGGTGCACGCTGTTCAGCAACCGGTTGTCGACCACCTCAAGCTCAGCCGACCCGACGCTGGACGCCACCATGGCCGCCAACCTCCAGAGCCTCTGTGCCGGTGGAGACGGCAACGAGACCACCGTGCTGGACATCACCTCCGCCTACGTTTTCGACAACCGCTACTACCAGAACCTCCTCAATCAGAAAGGCCTCCTGTCCTCCGACCAGGGCCTCTTCTCCAGCGACGACGGCATCGCCAACACCAAGGAGCTGGTGGAGACTTACAGCGCAGATGCCCACAAGTTCTTCTGGGATTTTGGCAGATCCATGGTGAAGATGGGCAACATCAGCCCACTCACCGGTGACGACGGCCAGATTCGCAAGAACTGCAGGGTTGTTAATTAACTGAGCTTCAGTGTGTTGAAAAGATAGTAAATTTCTTGTACTTTTCACAAGGCGATTGAGACGATGTGTGTTATGTTTTGATGTTACATGAATGCTTGAAGAAGCAGAAGTAATAACGATGTGATTGTGACTAGTTTGTGAACTGA TC GTCAAC AAAGATGTGATCCATTGGAAA AAAAGAACTGAATGTATGTGCCTTAAAAAA] [-] EMBL CB659518 [ ATCTCGAGAACATCT GCCCTGAAGTTGTTTCCTGCGCCGACATTGTAGCCCTTGCAGCTGGCTATGGAGTACTATTTAGTGGAGGCCCTTACTATGACGTTCTTCTCGGTAGAAGGGATGGTCTTGTCGCAAATCAATCAGGAGCTGACAACGGCCTCCCTTCACCGTTCGAACCCATCAAATCGATCATACAGAAGTTCAATGATGTCGGCCTCGACACAACCGATGTTGTCGTCCTATCAGGAGGGCACACGATCGGACGAGCCCGGTGCACGCTGTTCAGCAACCGGTTGTCGACCACCTCAAGCTCAGCCGACCCGACGCTGGACGCCACCATGGCCGCCAACCTCCAGAGCCTCTGTGCCGGTGGAGACGGCAACGAGACCACCGTGCTGGACATCACCTCCGCCTACGTTTTCGACAACCGCTACTACCAGAACCTCCTCAATCAGAAAGGCCTCCTGTCCTCCGACCAGGGCCTCTTCTCCAGCGACGACGGCATCGCCAACACCAAGGAGCTGGTGGAGACTTACAGCGCAGATGCCCACAAGTTCTTCTGGGATTTTGGCAGATCCATGGTGAAGATGGGCAACATCAGCCCACTCACCGGTGACGACGGCCAGATTCGCAAGAACTGCAGGGTTGTTAATTAACTGAGCTTCAGTGTGTTGAAAAGATAGTAAATTTCTTGTACTTTTCACAAGGCGATTGAGACGATGTGTGTTATGTTTTGATGTTACATGAATGCTTGAGGAAGCAGAAGTAATAACGATGTGATTGTGACT ] [-] EMBL CB676584 [ CTTGCAGCTGGCTATGGAGTACTATTTAGTGGAGGCCCTTACTATGACGTTCTTCTCGGTAGAAGGGATGGTCTTGTCGCAAATCAATCAGGAGCTGACAACGGCCTCCCTTCACCGTTTGAACCCATCAAATCGATCATACAGAAGTTCAATGATGTCGGCCTCGACACAACCGATGTTGTCGTCCTATCAGGAGGGCACACGATCGGACGAGCCCGGTGCACGCTGTTCAGCAACCGGTTGTCGACCACCTCAAGCTCAGCCGACCCGACGCTGGACGCCACCATGGCCGCCAACCTCCAGAGCCTTTGTGCCGGTGGAGACGGCAACGAGACCACCGTGCTGGACATCACCTCCGCCTACGTTTTCGACAACCGCTACTACCAGAACCTCCTCAATCAGAAAGGCCTCCTGTCCTCCGACCAGGGCCTCTTTTCCAGCGACGACGGCATCGCCAACACCAAGGAGCTGGTGGAGACTTACAGCGCAGATGCCCACAAGTTTTTTTGGGATTTTGGCAGATCCATGGTGAAGATGGGCAACATCAGCCCACTCACCGGTGACGACGGCCAGATTCGCAAGAACTGCAGGGTTGTTAATTAACTGAGCTTCAGTGTGTTGAAAAGATAGTAAATTTCTTGTACTTTTCACAAGGCGATTGAGACGATGTGTGTTATGTTTTGATGTTACATGAATGCTTGAAGAAGCAGAAGTAATAACGATGTGATTGTGAC ] [-] EMBL CB655545 [ GATGGTCTTGTCGCAAATCAATCAGGAGCTGACAACGGCCTCCCTTCACCGTTCGAACCCATCAAATCGATCATACAGAAGTTCAATGATGTCGGCCTCGACACAACCGATGTTGTCGTCCTATCAGGAGGGCACACGATCGGACGAGCCCGGTGCACGCTGTTCAGCAACCGGTTGTCGACCACCTCAAGCTCAGCCGACCCGACGCTGGACGCCACCATGGCCGCCAACCTCCAGAGCCTCTGTGCCGGTGGAGACGGCAACGAGACCACCGTGCTGGACATCACCTCCGCCTACGTTTTCGACAACCGCTACTACCAGAACCTCCTCAATCAGAAAGGCCTCCTGTCCTCCGACCAGGGCCTCTTCTCCAGCGACGACGGCATCGCCAACACCAAGGAGCTGGTGGAGACTTACAGCGCAGATGCCCACAAGTTCTTCTGGGATTTTGGCAGATCCATGGTGAAGATGGGCAACATCAGCCCACTCACCGGTGACGACGGCCAGATTCGCAAGAACTGCAGGGTTGTTAATTAACTGAGCTTCAGTGTGTTGAAAAGATAGTAAATTTCTTGTACTTTTCACAAGGCGATTGAGACGATGTGTGTTATGTTTTGATGTTACATGAATGCTTGAAGAAGCAGAAGTAATAACGATGTGATTGTGACTAGTTTGTGAACTGA TC GTCAAC AAAGATGTGATCCATTGGAAA AAAAAGA ] [-] EMBL CB648692 [ AGGAGGTGACAAGGGCCTCCTTTCACCGTTAGAACCCATCAAATCGATCATACAGAAGTTCAATGATGTCGGCCTCGACACAACCGATGTTGTCGTCCTATCAGGAGGGCACACGATCGGACGAGCCCGGTGCACGCTGTTCAGCAACCGGTTGTCGACCACCTCAAGCTCAGCCGACCCGACGCTGGACGCCACCATGGCCGCCAACCTCCAGAGCCTCTGTGCCGGTGGAGACGGCACCGAGACCACCGTGCTGGACATCACCTCCGCCTACGTTTTAGACATCCGCTATTACCAGAACCTCCTCAATCAGAAAGGCCTCCTGTCCTCCGACCAGGGCCTCTTTTCCAGCGATGTCGGCATCGCCAACACCAAGGAGCTGGTGGAGACTTACAGCGCAGATGCCCACAAGTTCTTTTGGGATTTTGGCAGATCCATGGTGAAGATGGGCAACATCAGCCCACTCACCGGTGATGACGGCCAGATTCGCAAGAACTGCAGGGTTGTTAATTAATTGAGCTTCAGTGTGTTGAAAAGATAGTAAATTTCTTGTACTTTTCCCAAGGCGATTGAGACGATGTGTGTTATGTTTTGATGTTACATGAATGCTTGAAGAAGCAGAAGTAATACCGATGTGATTGTGACTAGTTTGTGAACTGACTCTGTCAACCAAAAGATGTGATCCATTGGAAACAAAAGGACTGAATGTATGTCCCTTAAA ] [-] EMBL CF278413 [ TCCTCAATCAGAAAGGCCTCCTGTCCTCCGACCAGGGCCTCTTCTCCAGCGACGACGGCATCGCCAACACCAAGGAGCTGGTGGAGACTTACAGCGCAGATGCCCACAAGTTCTTCTGGGATTTTGGCAGATCCATGGTGAAGATGGGCAACATCAGCCCACTCACCGGTGACGACGGCCAGATTCGCAAGAACTGCAGGGTTGTTAATTAACTGAGCTTCAGTGTGTTGAAAAGATAGTAAATTTCTTGTACTTTTCACAAGGCGATTGAGACGATGTGTGTTATGTTTTGATGTTACATGAATGCTCGAAGAAGCAGAAGTAATAACGATGTGAATGTGACTAGTTTGTAAAaaaa ] [-] EMBL CF278567 [ GAAAGGCCTCCTGTCCTCCGACCAGGGCCTCTTCTCCAGCGACGACGGCATCGCCAACACCAAGGAGCTGGTGGAGACTTACAGCGCAGATGCCCACAAGTTCTTCTGGGATTTTGGCAGATCCATGGTGAAGATGGGCAACATCAGCCCACTCACCGGTGACGACGGCCAGATTCGCAAGAACTGCAGGGTTGTTAATTAACTGAGCTTCAGTGTGTTGAAAAGATAGTAAATTTCTTGTACTTTTCACAAGGCGATTGAGACGATGTGTGTTATGTTTTGATGTTACATGAATGCTTGAAGAAGCAGAAGTAATAACGATGTGATTGTGACTAGTTCGTGAAaaatat ] consensusID : consensus_15178#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 807 fasta sequence [GAAGTCATTGACGCGATAAAGGAAGATCTCGAGAACATCTGCCCTGAAGTTGTTTCCTGCGCCGACATTGTAGCCCTTGCAGCTGGCTATGGAGTACTATTTAGTGGAGGCCCTTACTATGACGTTCTTCTCGGTAGAAGGGATGGTCTTGTCGCAAATCAATCAGGAGCTGACAACGGCCTCCCTTCACCGTTCGAACCCATCAAATCGATCATACAGAAGTTCAATGATGTCGGCCTCGACACAACCGATGTTGTCGTCCTATCAGGAGGGCACACGATCGGACGAGCCCGGTGCACGCTGTTCAGCAACCGGTTGTCGACCACCTCAAGCTCAGCCGACCCGACGCTGGACGCCACCATGGCCGCCAACCTCCAGAGCCTCTGTGCCGGTGGAGACGGCAACGAGACCACCGTGCTGGACATCACCTCCGCCTACGTTTTCGACAACCGCTACTACCAGAACCTCCTCAATCAGAAAGGCCTCCTGTCCTCCGACCAGGGCCTCTTCTCCAGCGACGACGGCATCGCCAACACCAAGGAGCTGGTGGAGACTTACAGCGCAGATGCCCACAAGTTCTTCTGGGATTTTGGCAGATCCATGGTGAAGATGGGCAACATCAGCCCACTCACCGGTGACGACGGCCAGATTCGCAAGAACTGCAGGGTTGTTAATTAACTGAGCTTCAGTGTGTTGAAAAGATAGTAAATTTCTTGTACTTTTCACAAGGCGATTGAGACGATGTGTGTTATGTTTTGATGAAGCATGAATGCTTGAAGAAGCAGAAGTAATAACGAAAAAAAAAGA] [-] EMBL CB644884 [GAAGTCATTGACGCGATAAAGGAAGATCTCGAGAACATCTGCCCTGAAGTTGTTTCCTGCGCCGACATTGTAGCCCTTGCAGCTGGCTATGGAGTACTATTTAGTGGAGGCCCTTACTATGACGTTCTTCTCGGTAGAAGGGATGGTCTTGTCGCAAATCAATCAGGAGCTGACAACGGCCTCCCTTCACCGTTCGAACCCATCAAATCGATCATACAGAAGTTCAATGATGTCGGCCTCGACACAACCGATGTTGTCGTCCTATCAGGAGGGCACACGATCGGACGAGCCCGGTGCACGCTGTTCAGCAACCGGTTGTCGACCACCTCAAGCTCAGCCGACCCGACGCTGGACGCCACCATGGCCGCCAACCTCCAGAGCCTCTGTGCCGGTGGAGACGGCAACGAGACCACCGTGCTGGACATCACCTCCGCCTACGTTTTCGACAACCGCTACTACCAGAACCTCCTCAATCAGAAAGGCCTCCTGTCCTCCGACCAGGGCCTCTTCTCCAGCGACGACGGCATCGCCAACACCAAGGAGCTGGTGGAGACTTACAGCGCAGATGCCCACAAGTTCTTCTGGGATTTTGGCAGATCCATGGTGAAGATGGGCAACATCAGCCCACTCACCGGTGACGACGGCCAGATTCGCAAGAACTGCAGGGTTGTTAATTAACTGAGCTTCAGTGTGTTGAAAAGATAGTAAATTTCTTGTACTTTTCACAAGGCGATTGAGACGATGTGTGTTATGTTTTGATGAAGCATGAATGCTTGAAGAAGCAGAAGTAATAACGAAAAAAAAAGA] consensusID : consensus_15178#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 608 fasta sequence [GCCCATCGATGTTGTAGTCTTTCGAGAGGCACCCCATTGGGGGGGCCCGGTCCACTTGTTTCACCACGTGTTGTCGACCTCTCAAGGTGCAGCGGCCGGGTGTGGGACGCACCATGGGCGCCAACTTGCAGACCTTTGTCCGGGGGAGACGGCAACGAGACCACCTGTTTGGACATCAACCTCGGCCTATGTTTAGGCAACCGTTACTACCAGAACCTCCACAATCAGAAAGGCTTCCTGTCCTCCGGACAGGGCCTCTTCTCCAGCGAGGACGGCATCGCCAACACCAAGGAGCTGGTGGAGACTTCCAGCGCAGATGCCCACAAGTTCTTCTGGGATTTTGGCAGATCCATGGTGAAGATGGGCAACATCAGCCCACTCACCGGTGACGACGGCCAGATTCGCAAGAACTGCAGGGTTGTTAATTAACTGAGCTTCAGTGTGTTGAAAAGATAGTAAATTTCTTGTACTTTTCACAAGGCGATTGAGACGA-TGTGTGTTATGTTTTGATGTTACATGAATGCTTGAAGAAGCAGAAGTAATAACGATGTGATTGTGACTAGTTTGTGAACTGATCGTCAACAAAAATGTGATCCATTGGAAAAAAA] [-] EMBL CA755379 [GCCCATCGATGTTGTAGTCTTTCGAGAGGCACCCCATTGGGGGGGCCCGGTCCACTTGTTTCACCACGTGTTGTCGACCTCTCAAGGTGCAGCGGCCGGGTGTGGGACGCACCATGGGCGCCAACTTGCAGACCTTTGTCCGGGGGAGACGGCAACGAGACCACCTGTTTGGACATCAACCTCGGCCTATGTTTAGGCAACCGTTACTACCAGAACCTCCACAATCAGAAAGGCTTCCTGTCCTCCGGACAGGGCCTCTTCTCCAGCGAGGACGGCATCGCCAACACCAAGGAGCTGGTGGAGACTTCCAGCGCAGATGCCCACAAGTTCTTCTGGGATTTTGGCAGATCCATGGTGAAGATGGGCAACATCAGCCCACTCACCGGTGACGACGGCCAGATTCGCAAGAACTGCAGGGTTGTTAATTAACTGAGCTTCAGTGTGTTGAAAAGATAGTAAATTTCTTGTACTTTTCACAAGGCGATTGAGACGA TGTGTGTTATGTTTTGATGTTACATGAATGCTTGAAGAAGCAGAAGTAATAACGATGTGATTGTGACTAGTTTGTGAACTGATCGTCAACAAAGATGTGATCCATTGGAAAAAAA] [-] EMBL CF279115 [ TGAAAAAAAAGTAAATTTCTTGTACTTTTCACAAGGCGATTGAGACGA TGTGTGTTAAGTTTTGATGTTACATGAATGCTTGAAGAAGCAGAAGTAATAACGATGTGATTGTGACTAGTTTGTGAACTGATCGTCAACAAAAATGTGATCC TTGGAAAAAAA] [-] EMBL CF276285 [ AGATAGTAAATTTCTTGTACTTTTCACAAGGCGATTGAGACGANTGTGTGTTATGTTTTGATGTTACATGAATGCTTGAAGAAGCAGAAGTAATAACGATGTGATTGTGACTAGTTTGTGAACTGATCGTCAACAAAAATGT ATCCA TGGAAAAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15178#0 CACAAGAGCAGGGCAGTAACTTCTGTGAGAGATGGAGTACTCTTACAGCTACAGGTTCAT 60 consensus_15178#1 ------------------------------------------------------------ consensus_15178#2 ------------------------------------------------------------ consensus_15178#0 GCTTGTATGCTCTGTTCTTGTACTGTGCCTTAATACTCGGGGTGCGAGATGCCAGTTATC 120 consensus_15178#1 ------------------------------------------------------------ consensus_15178#2 ------------------------------------------------------------ consensus_15178#0 CGACGATTTCTACGACTACATATGTCCTGATGTGTACACCGTTGTCCAGCAGCATGTTTA 180 consensus_15178#1 ------------------------------------------------------------ consensus_15178#2 ------------------------------------------------------------ consensus_15178#0 TGCTGCCATGAGGACTGAGATGAGGATGGGTGCCTCCCTCCTAAGGCTCCATTTCCATGA 240 consensus_15178#1 ------------------------------------------------------------ consensus_15178#2 ------------------------------------------------------------ consensus_15178#0 CTGCTTTGTCAATGGGTGTGACGGTTCCATCCTTCTGGACGGTGACGACGGCGAGAAATT 300 consensus_15178#1 ------------------------------------------------------------ consensus_15178#2 ------------------------------------------------------------ consensus_15178#0 TGCACTTCCCAACAAGAACTCTGTCAGAGGGTTCGAAGTCATTGACGCGATAAAGGAAGA 360 consensus_15178#1 ----------------------------------GAAGTCATTGACGCGATAAAGGAAGA 26 consensus_15178#2 ------------------------------------------------------------ consensus_15178#0 TCTCGAGAACATCTGCCCTGAAGTTGTTTCCTGCGCCGACATTGTAGCCCTTGCAGCTGG 420 consensus_15178#1 TCTCGAGAACATCTGCCCTGAAGTTGTTTCCTGCGCCGACATTGTAGCCCTTGCAGCTGG 86 consensus_15178#2 ------------------------------------------------------------ consensus_15178#0 CTATGGAGTACTATTTAGTGGAGGCCCTTACTATGACGTTCTTCTCGGTAGAAGGGATGG 480 consensus_15178#1 CTATGGAGTACTATTTAGTGGAGGCCCTTACTATGACGTTCTTCTCGGTAGAAGGGATGG 146 consensus_15178#2 ------------------------------------------------------------ consensus_15178#0 TCTTGTCGCAAATCAATCAGGAGCTGACAACGGCCTCCCTTCACCGTTCGAACCCATCAA 540 consensus_15178#1 TCTTGTCGCAAATCAATCAGGAGCTGACAACGGCCTCCCTTCACCGTTCGAACCCATCAA 206 consensus_15178#2 ------------------------------------------------------------ consensus_15178#0 ATCGATCATACAGAAGTTCAATGATGTCGGCCTCGACACAACCGATGTTGTCGTCCTATC 600 consensus_15178#1 ATCGATCATACAGAAGTTCAATGATGTCGGCCTCGACACAACCGATGTTGTCGTCCTATC 266 consensus_15178#2 ------------------------------------GCCCATCGATGTTGTAGTCTT-TC 23 * * ********* *** * ** consensus_15178#0 AGGAGGGCACACGATCGGACGAGCCCGGTGCACGCTGTTCAGCAACCGGTTGTCGACCAC 660 consensus_15178#1 AGGAGGGCACACGATCGGACGAGCCCGGTGCACGCTGTTCAGCAACCGGTTGTCGACCAC 326 consensus_15178#2 GAGAGG-CACCCCATTGGGGGGGCCCGGTCCAC-TTGTTTCACCACGTGTTGTCGACC-T 80 **** *** * ** ** * ******* *** **** * ** ********** consensus_15178#0 CTCAAGCTCAGCCGACCCGACGCTGGACGCCACCATGGCCGCCAACCTCCAGAGCCTCTG 720 consensus_15178#1 CTCAAGCTCAGCCGACCCGACGCTGGACGCCACCATGGCCGCCAACCTCCAGAGCCTCTG 386 consensus_15178#2 CTCAAGGTGCAGCGGCCGGGTGTGGGACGC-ACCATGGGCGCCAACTTGCAGA-CCTTTG 138 ****** * ** ** * * ****** ******* ******* * **** *** ** consensus_15178#0 TGCCGGTGGAGACGGCAACGAGACCACCGTGCTGGACATCA-CCTCCGCCTACGTTTTCG 779 consensus_15178#1 TGCCGGTGGAGACGGCAACGAGACCACCGTGCTGGACATCA-CCTCCGCCTACGTTTTCG 445 consensus_15178#2 T-CCGGGGGAGACGGCAACGAGACCACCTGTTTGGACATCAACCTCGGCCTATGTTTA-G 196 * **** ********************* ********* **** ***** **** * consensus_15178#0 ACAACCGCTACTACCAGAACCTCCTCAATCAGAAAGGCCTCCTGTCCTCCGACCAGGGCC 839 consensus_15178#1 ACAACCGCTACTACCAGAACCTCCTCAATCAGAAAGGCCTCCTGTCCTCCGACCAGGGCC 505 consensus_15178#2 GCAACCGTTACTACCAGAACCTCCACAATCAGAAAGGCTTCCTGTCCTCCGGACAGGGCC 256 ****** **************** ************* ************ ******* consensus_15178#0 TCTTCTCCAGCGACGACGGCATCGCCAACACCAAGGAGCTGGTGGAGACTTACAGCGCAG 899 consensus_15178#1 TCTTCTCCAGCGACGACGGCATCGCCAACACCAAGGAGCTGGTGGAGACTTACAGCGCAG 565 consensus_15178#2 TCTTCTCCAGCGAGGACGGCATCGCCAACACCAAGGAGCTGGTGGAGACTTCCAGCGCAG 316 ************* ************************************* ******** consensus_15178#0 ATGCCCACAAGTTCTTCTGGGATTTTGGCAGATCCATGGTGAAGATGGGCAACATCAGCC 959 consensus_15178#1 ATGCCCACAAGTTCTTCTGGGATTTTGGCAGATCCATGGTGAAGATGGGCAACATCAGCC 625 consensus_15178#2 ATGCCCACAAGTTCTTCTGGGATTTTGGCAGATCCATGGTGAAGATGGGCAACATCAGCC 376 ************************************************************ consensus_15178#0 CACTCACCGGTGACGACGGCCAGATTCGCAAGAACTGCAGGGTTGTTAATTAACTGAGCT 1019 consensus_15178#1 CACTCACCGGTGACGACGGCCAGATTCGCAAGAACTGCAGGGTTGTTAATTAACTGAGCT 685 consensus_15178#2 CACTCACCGGTGACGACGGCCAGATTCGCAAGAACTGCAGGGTTGTTAATTAACTGAGCT 436 ************************************************************ consensus_15178#0 TCAGTGTGTTGAAAAGATAGTAAATTTCTTGTACTTTTCACAAGGCGATTGAGACGATGT 1079 consensus_15178#1 TCAGTGTGTTGAAAAGATAGTAAATTTCTTGTACTTTTCACAAGGCGATTGAGACGATGT 745 consensus_15178#2 TCAGTGTGTTGAAAAGATAGTAAATTTCTTGTACTTTTCACAAGGCGATTGAGACGATGT 496 ************************************************************ consensus_15178#0 GTGTTATGTTTTGATGTTACATGAATGCTTGAAGAAGCAGAAGTAATAACGATGTGATTG 1139 consensus_15178#1 GTGTTATGTTTTGATGAAGCATGAATGCTTGAAGAAGCAGAAGTAATAACGAAAAAAAAA 805 consensus_15178#2 GTGTTATGTTTTGATGTTACATGAATGCTTGAAGAAGCAGAAGTAATAACGATGTGATTG 556 **************** ********************************* * consensus_15178#0 TGACTAGTTTGTGAACTGATCGTCAACAAAGATGTGATCCATTGGAAAAAAAGGACTGAA 1199 consensus_15178#1 GA---------------------------------------------------------- 807 consensus_15178#2 TGACTAGTTTGTGAACTGATCGTCAACAAAAATGTGATCCATTGGAAAAAAA-------- 608 consensus_15178#0 TGTATGTGCCTTAAAAAA 1217 consensus_15178#1 ------------------ consensus_15178#2 ------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||