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Oryza sativa
cluster # 15182 cluster # 15182       Sequences # 20       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_15182#0 length = 621 sequences # 10  
consensus_15182#1 length = 571 sequences # 8  
consensus_15182#2 length = 490 sequences # 1  
consensus_15182#3 length = 449 sequences # 1  

consensusID : consensus_15182#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 621
fasta sequence
                              [ACATCGACTCCTATCGGCGGTCGCGCGAGCTCCAGCGCCAAGGGGATCCGTTGCGTCCGGCGGGGGTTAATTTCTTGCGGTTGTAGGATCCCCGATGGCGGATACGGCGAAGGCCGATGCGGCGGCGGAGGCGGCCAAGATGGACCTGCTCGAGGACGACGACGAGTTCGAGGAGTTTGAGATCGACCAAGAATGGGATGACAAGGAAGAAGGCAACGAGGCAGTTCAGCAATGGGAGGATG-ACTGGGATGACGATGATGTCAATGACGACTTCTCTCTGCAGCTCAGGAAAGAGCTGGAGAGCATCCCATCGAAGAACTAGAACTTGTGGTCTTGTATTCAGTACTTTCAGATAGGAAGTGGTATCTGCTGGATTTGGCATGTTTACTGTTATATTTACCAACTCGAGCATTTTGCTTGTTCTGTGGTATGCCTTTCCGTTATACATTTTATTACCAAATACGGTTCATAAAACTATATTGCCTATGTCTAGAAAGTGGTATCGGTTGTAGAACCGTAATCCATCAACTGGCTGAACCTTTTTGTTCCGTGAATGCAGAAAGCCATTGCTTAGTGTTTTTTTTATCTAATTAACTGTGAAGATAATATGTTTGTTAAAAA]

[+] EMBL AK058821             [ACATCGACTCCTATCGGCGGTCGCGCGAGCTCCAGCGCCAAGGGGATCCGTTGCGTCCGGCGGGGGTTAATTTCTTGCGGTTGTAGGATCCCCGATGGCGGATACGGCGAAGGCCGATGCGGCGGCGGAGGCGGCCAAGATGGACCTGCTCGAGGACGACGACGAGTTCGAGGAGTTTGAGATCGACCAAGAATGGGATGACAAGGAAGAAGGCAACGAGGCAGTTCAGCAATGGGAGGATG ACTGGGATGACGATGATGTCAATGACGACTTCTCTCTGCAGCTCAGGAAAGAGCTGGAGAGCATCCCATCGAAGAACTAGAACTTGTGGTCTTGTATTCAGTACTTTCAGATAGGAAGTGGTATCTGCTGGATTTGGCATGTTTACTGTTATATTTACCAACTCGAGCATTTTGCTTGTTCTGTGGTATGCCTTTCCGTTATACATTTTATTACCAAATACGGT                                                                                                                                                           ]
[+] EMBL AK119788             [           TATCGGCGGTCGCGCGAGCTCCAGCGCCAAGGGGATCCGTTGCGTCCGGC GGGGTTAATTTCTTGCGGTTGTAGGATCCCCGATGGCGGATACGGCGAAGGCCGATGCGGCGGCGGAGGCGGCCAAGATGGACCTGCTCGAGGACGACGACGAGTTCGAGGAGTTTGAGATCGACCAAGAATGGGATGACAAGGAAGAAGGCAACGAGGCAGTTCAGCAATGGGAGGATG ACTGGGATGACGATGATGTCAATGACGACTTCTCTCTGCAGCTCAGGAAAGAGCTGGAGAGCATCCCATCGAAGAACTAGAACTTGTGGTCTTGTATTCAGTACTTTCAGATAGGAAGTGGTATCTGCTGGATTTGGCATGTTTACTGTTATATCTACCAACTCGAGCATTTTGCTTGTTCTGTGGTATGCCTTTCCGTTATACATTTTATTACCAAATACGGTTCATAAAACTATATTGCCTATGTCTAGAAAGTGGTATCGGTTGTAGAACCGTAATCCATCAACTGGCTGAACCTTT                                                                               ]
[+] EMBL AU082243             [                     CGCGCGAGCNCCAGCGCCAAGGGGATCCGTTGCGTCCGGCGGGGGTTAATTTCTTGCGGTTGTAGGATCCCCGATGGCGGATACGGCGAAGGCNAATGCGGCGGCGGAGGCGGCCAAGATGGACCTGCTCGAGGACGACGACGAGTTCGAGGAGTTTGAGATCGACCAAGAATGGGATGACAAGGAAGAAGGCAACGAGGCAGTTCAGCAATGGGAGGATG ACTGGGATGACGATGATGTCAATGACGACTTCTCTCTGCAGCTCAGGAAAGAGCTGGAGAGCATCCCATCGAAGAACTAGAACTTGTGGTCTTGTATTCAGTACTTTCAGATAGGAAGTGGTACCTNCTGGATTTGGCATG TTNCTGTTATATTTACCAAaaa                                                                                                                                                                                                                       ]
[+] EMBL AU082236             [                     CGCGCGAGCTCCAGCGCCAAGGGGATCCGTTGCGTCCGGCGGGGGTTAATTTCTTGCGGTTGTAGGATCCCCGATGGCGGATACGGCGAAGGCCGATGCGGCGGCGGAGGCGGCCAAGATGGACCTGCTCGAGGACGACGACGAGTTCGAGGAGTTTGAGATCGACCAAGAATGGGATGACAAGGAAGAAGGCAACGAGGCAGTTCAGCAATGGGAGGATG ACTGGGATGACGATGATGTCAATGACGACTTCTCTCTGCAGCTCAGGAAAGAGCTGGAGAGCATCCCATCGAAGAACTAGAACTTGTGGTCTTGTATTCAGTACTTTCAGATAGGAAGTGGTATCTGCTGGATTTGGCATGTTTACTGNTATATTTACCAACTCGAGCATTTTGCTTGTTCTGTGGT                                                                                                                                                                                                ]
[+] EMBL CA999021             [                                  GCGCCAAGGGGATCCGTTGCGTCCGGCGGGGGTTAATTTCTTGCGGTTGTAGGATCCCCGATGGCGGATACGGCGAAGGCCGATGCGGCGGCGGAGGCGGCCAAGATGGACCTGCTCGAGGACGACGACGAGTTCGAGGAGTTTGAGATCGACCAAGAATGGGATGACAAGGAAGAAGGCAACGAGGCAGTTCAGCAATGGGAGGATG ACTGGGATGACGATGATGTCAATGACGACTTCTCTCTGCAGCTCAGGAAAGAGCTGGAGAGCATCCCATCGAAGAACTAGAACTTGTGGTCTTGTATTCAGTACTTTCAGATAGGAAG                                                                                                                                                                                                                                                                     ]
[+] EMBL BI796735             [                                       AAGGGGATCC TTGCGTCC GCGGGGGTTAATTTCTTCGGGTTGTAGGATCCCCGATGGCGGATACGGCGAAGGCCGATGCGGCGGCGGAGGCGGCCAAGATGGACCTGCTCGAGGACGACGACGAGTTCGAGGAGTTTGAGATCGACCAAGAATGGGATGACAAGGAAGAAGGCAACGA GCAGTTCAGCAATGGGAGGATG ACTGGGATGACGATGATGTCAATGACGACTTCTCTCTGCAGCTCAGGAAAGAGCTGGAGAGCATCCCATCGAAGAACTAGAACTTGTGGTCTTGTATTCAGTACTTTCAGATAGGAAGTGGTATCTGCTGGATTTGGCATGTTTACTGTTATATTTACCAACTCGAGCATTTTGCTTGTTCTGTGGTATGCCTTTCCGTTATACATTTTATTACCAAAaaaa                                                                                                                                                             ]
[+] EMBL AU082208             [                                                                                                                                 GGCGGCCAAGATGGACCTGCTCGAGGACGACGACGAGTTCGAGGAGTTTGAGATCGACCAAGAATGGGATGACAAGGAAGAAGGCAACGAGGCAGTTCAGCAATGGGAGGATG ACTGGGATGACGATGATGTCAATGACGACTTCTCTCTGCAGCTCAGGAAAGAGCTGGAGAGCATCCCATCGAAGAACTAGAACTTGTGGTCTTGTATTCAGTACTTTCAGATAGGAAGTGGTATCTGCTGGATTTGGCATGTTTACTGTTATATTTACCAACTCGAGCATTTTGCTTGTTCTGTGGTATGCCTTTCCGTTATACATTTTATTACCAAATACGG TCATAAAACTAaaaaaa                                                                                                                                          ]
[+] EMBL AU082207             [                                                                                                                                 GGCGGCCAAGATGGACCTGCTCGAGGACGACGACGAGTTCGAGGAGTTTGAGATCGACCAAGAATGGGATGACAAGGAAGAAGGCAACGAGGCAGTTCAGCAATGGGAGGATG ACTGGGATGACGATGATGTCAATGACGACTTCTCTCTGCAGCTCAGGAAAGAGCTGGAGAGCATCCCATCGAAGAACTAGAACTTGTGGTCTTGTATTCAGTACTTTCAGATAGGAAGTGGTATCTGCTGGATTTGGCATGTTTACTGTTATATTTACCAACTCGAGCATTTTGCTTGTTCTGTGGTATGCCTTTCCGTTATACATTTTATTACCAAATACGGTTCATAAAACTAnaaa                                                                                                                                            ]
[+] EMBL BI795037             [                                                                                                                                     GCCAAGATGGACCTGCTCGAGGACGACGACGAGTTCGAGGAGTTTGAGATCGACCAAGAATGGGATGACAAGGAAGAA GCAACGA GCAGTTCAGCAATGGGAGGATGTACTGGGATGACGATGATGTCAATGACGACTTCTCTCTGCAGCTCAGGAAAGAGCTGGAGAGCATCCCATCGAAGAACTAGAACTTGTGGTCTTGTATTCAGTACTTTCAGATAGGAAGTGGTATCTGCTGGATTTGGCATGTTTACTGTTATATTTACCAACTCGAGCATTTGGCTTGTTCTGTGGTATGCCTTTCCGTTATACATTTTATTACCAAATACGGTTCATAAAACTATATTGCCTATGTCTAGAAAGTGGTATCGGTTGTAGAACCGTAATCCATCAACTGGCTGAACCTTTTTGTTCCGTGAATGCAGAAAGCCATTGCTTAGTGTTTTTTTTATCTAATTAACTGTGAAGATAATATGTTTGTTAAAAA]
[+] EMBL AU029955             [                                                                                                                                                             GACGACGAGTTCGAGGAGTTTGAGATCGACCAAGAATGGGATGACAAGGAAGAAGGCAACGAGGCAGTTCAGCAATGGGAGGATG ACTGGGATGACGATGATGTCAATGACGACTTCTCTCTGCAGCTCAGGAAAGAGCTGGAGAGCATCCCATCGAAGAACTAGAACTTGTGGTCTTGTATTCAGTACTTTCAGATAGGAAGTGGTATCTGCTGGATTTGGCATGTTTACTGTTATATTTACCAACTCGAGCATTTTGCTTGTTCTGTGGTATGCCTTTCCGTTATACATTTTATTACCAAATACGGTTCATAAAACTATATTGCCTATGTCTAAGAAGTGGNATCGGTTGTAGAA CGNTATCCATC ACTGGCTGAACCTTTTTGTn                                                                          ]


>consensus_15182#0 ACATCGACTCCTATCGGCGGTCGCGCGAGCTCCAGCGCCAAGGGGATCCGTTGCGTCCGG CGGGGGTTAATTTCTTGCGGTTGTAGGATCCCCGATGGCGGATACGGCGAAGGCCGATGC GGCGGCGGAGGCGGCCAAGATGGACCTGCTCGAGGACGACGACGAGTTCGAGGAGTTTGA GATCGACCAAGAATGGGATGACAAGGAAGAAGGCAACGAGGCAGTTCAGCAATGGGAGGA TGACTGGGATGACGATGATGTCAATGACGACTTCTCTCTGCAGCTCAGGAAAGAGCTGGA GAGCATCCCATCGAAGAACTAGAACTTGTGGTCTTGTATTCAGTACTTTCAGATAGGAAG TGGTATCTGCTGGATTTGGCATGTTTACTGTTATATTTACCAACTCGAGCATTTTGCTTG TTCTGTGGTATGCCTTTCCGTTATACATTTTATTACCAAATACGGTTCATAAAACTATAT TGCCTATGTCTAGAAAGTGGTATCGGTTGTAGAACCGTAATCCATCAACTGGCTGAACCT TTTTGTTCCGTGAATGCAGAAAGCCATTGCTTAGTGTTTTTTTTATCTAATTAACTGTGA AGATAATATGTTTGTTAAAAA



consensusID : consensus_15182#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 571
fasta sequence
                              [AAGAACAAACCGCCTCCAAAAATCTAGGGTTTCCACCCGCGCGCGACGCGATTCAGGTGTAGCAGCAGCGGCAGAGGGTGATGGCGGCGGCGGCGCCGGCGGACGCGAAGGCGGAGGCGGCCAAGATGGACCTCCTCGAGGACGACGACGAGTTCGAGGAGTTTGAGATCGACCAAGAATGGGATGACAAGGAGGATGGTGATGAGGCCATCCAGCAATGGGAGGATGATTGGGATGATGACGACGTCAATGACGACTTCTCGCTTCAGCTGAGGAAGGAGCTGGAGGAATGCAACACCCAGAAGATCTGAACTACTTTTTTTTCCCAGTTATGTTTAGCTGTAGCACCTATGCTGGGTCAGGCACTTTTGTACCCTTTGTGCCCCATTGCTTTCT-CAACCTGCAATGTTCCTACTATACTCCTACTTGTGTGCTGAAACCTGCGATCAAATTTAATTTGTGAAAGGGTTAAAACCAAGTTGGTGGAAAAAAAATGGTTCTCTATTGTTGGTAACTTCGAGTTCGAAAATCGGGGCTAATAAGCGTTGTCCCTGTTGGTCAAAAAAAAAAA]

[+] EMBL CF301093             [AAGAACAAACCGCCTCCAAAAATCTAGGGTTTCCACCCGCGCGCGACGCGATTCAGGTGTAGCAGCAGCGGCAGAGGGTGATGGCGGCGGCGGCGCCGGCGGACGCGAAGGCGGAGGCGGCCAAGATGGACCTCCTCGAGGACGACGACGAGTTCGAGGAGTTTGAGATCGACCAAGAATGGGATGACAAGGAGGATGGTGATGAGGCCATCCAGCAATGGGAGGATGATTGGGATGATGACGACGTCAATGACGACTTCTCGCTTCAGCTGAGGAAGGAGCTGGAGGAATGCAACACCCAGAAGATCTGAACTACTTTTTTTTCCCAGTTATGTTTAGCTGTAGCACCTATGCTGGGTCAGGCACTTTTGTACCCTTTGTGCCCCATTGCTTTCT CAACCTGCAATGTTCCTACTATACTCCTACTTGTGTGCTGAAACCTGCGATCAAATTTAATTTGTGAAAGGGTTAAAACCAAGTTGGTGGAAAAAAA                                                                              ]
[+] EMBL CF333432             [                             TTTCCACCCGCGCGCGACGCGATTCAGGTGTAGCAGCAGCGGCAGAGGGTGATGGCGGCGGCGGCGCCGGCGGACGCGAAGGCGGAGGCGGCCAAGATGGACCTCCTCGAGGACGACGACGAGTTCGAGGAGTTTGAGATCGACCAAGAATGGGATGACAAGGAGGATGGTGATGAGGCCATCCAGCAATGGGAGGATGATTGGGATGATGACGACGTCAATGACGACTTCTCGCTTCAGCTGAGGAAGGAGCTGGAGGAATGCAACACCCAGAAGATCTGAACTACTTTTTTTTCCCAGTTATGTTTAGCTGTAGCACCTATGCTGGGTCAGGCACTTTTGTACCCTTTGTGCCCCATTGCTTTCTNCAACCTGC ATGTTCCTACTATACTCCTACTTGTGTGCTGAAACCTGCGATCAAATTTAATTTGTGAA                                                                                                           ]
[-] EMBL BI306326             [                                     CGCGCGCGACGCGATTCAGGTGTAGCAACAACGGCAAAGGGTGATGGCGGCGGCGGCCCCGGCGGACGCGAAGGCGGAGGCGGCCAAAATGGACCTCCTCGAGGACGACGACGAGTTTGAGGAGTTTGAGATCGACCAAGAATGGGATGACAAGGAGGATGGTGATGAGGCCATCCAGCAATGGGAGGATGATTGGGATGATGACGACGTCAATGACGACTTTTCGCTTCAGCTGAGGAAGGAGCTGGAGGAATGCAACACCCAGAAGATTTGAACTACTTTTTTTTCCCAGTTATGTTTAGCTGTAGCACCTATGCTGGGTCAGGCACTTTTGTACCCTTTGTGCCCCATTGCTTTTT CAACCTGCAATGTTCCTACTAAACTCCTACTTGTGTGGTGAAACCTGCGATCAAATTTAATTTGTGAAAGGGTTAAAACCAAGTTGG GGAAAAAAca                                                                             ]
[+] EMBL CA760135             [                                              CGCGATTCAGGTGTAGCAGCAGCGGCAGAGGGTGATGGCGGCGGCGGCGCCGGCGGACGCGAAGGCGGAGGCGGCCAAGATGGACCTCCTCGAGGACGACGACNAGTTCGAGGAGTTTGAGATCGACCAAGAATGGGATGACAAGGAGGATGGTGATGAGGCCATCCAGCAATGGGAGGATGACTGGGATGATGACGACGTCAATGACGACTTCTCGCTTCAGCTGAGGAAGGAGCTGGAGGAATGCAACACCCAGAAGATCTGAACTACTTTTTTTTCCCAGTTATGTTTAGCTGTAGCACCTATGCTGGGTCAGGCACTTTTGTACCCTTTGTGCCCCATTGCTTTCT CAACCTGCAATGTTCCTACTATACTCCTACTTGTGTGCTGAAACCTGCGATCAAATTTAATTTGTGAAAGGGTTAAAACCAAGTTGGTGGAAAAAATATGGTTCTCTATTGTTGGTAACTTCGAGTTCGAAAATCGGGGCTAATAAGCGTTGTCCCTGTTGGTCAAAAAAAAAAA]
[-] EMBL CB967231             [                                              CGCGATTCAGGTGTAGCAGCAGCGGCAGAGGGTGATGGCGGCGGCGGCGCCGGCGGACGCGAAGGCGGAGGCGGCCAAGATGGACCTCCTCGAGGACGACGACGAGTTCGAGGAGTTTGAGATCGACCAAGAATGGGATGACAAGGAGGATGGTGATGAGGCCATCCAGCAATGGGAGGATGATTGGGATGATGACGACGTCAATGACGACTTCTCGCTTCAGCTGAGGAAGGAGCTGGAGGAATGCAACACCCAGAAGATCTGAACTACTTTTTTTTCCCAGTTATGTTTAGCTGTAGCACCTATGCTGGGTCAGGCACTTTTGTACCCTTTGTGCCCCATTGCTTTCT CAACCTGCAATGTTCCTACTATACTCCTACTTGTGTGCTGAAACCTGCGATC AATTTAATTTGTGAAAGGGTTAAAACCAA                                                                                             ]
[-] EMBL CF301094             [                                                                                                                                        CGAGGACGACGACGAGTTCGAGGAGTTTGAGATCGACCAAGAATGGGATGACAAGGAGGATGGTGATGAGGCCATCCAGCAATGGGAGGATGATTGGGATGATGACGACGTCAATGACGACTTCTCGCTTCAGCTGAGGAAGGAGCTGGAGGAATGCAACACCCAGAAAATTTGAACTACTTTTTTTTCCCAGTTATGTTTAGCTGTAGCACCTAAGATGGGTCAGGCACTTTTGTACCCTTTGTGCCCCATTGCTTTCT CAACCTGCAATGTTCCTACTATACTCCTACTTGTGTGCTGAAACCTGCGATCAAATTTAATTTGTGAAAGGGTTAAAACCAAGTTGGTGGAAAAAAAA                                                                             ]
[-] EMBL D43132               [                                                                                                                                                                                                 GGATGGTGATGAGGCCATCCAGCAATGGGAGGATGATTGGGATGATGACGACGTCAATGACGACTTCTCGCTTCAGCTGAGGAAGGAGCTGGAGGAATGCAACACCCAGAAGATCTGAACTACTTTTTTTTCCCAGTTATGTTTAGCTGTAGCACCTATGCTGGGTCAGGCACTTTTGTACCCTTTGTGCCCCATTGCTTTCT CAACCTGCAATGTTCCTACTATACTCCTACTTGTGTGCTGAAACCTGCGATCAAATTTAATTTGTGAAAGGGTTAAAACCA                                                                                              ]
[-] EMBL AU225157             [                                                                                                                                                                                                                                                                                              ccgcTGCAACACCCAGAAGATCTGAACTACTTTTTTTTCCCAGTTATGTTTAGCTGTAGCACCTATGCTGGGTCAGGCACTTTTGTACCCTTTGTGCCCCATTGCTTTCT CAACCTGCAATGTTCCTACTATACTCCTACTTGTGTGCTGAAACCTGCGATCAAATTTAATTTGTGAAAGGGTTAAAACCAAGTTGGTGGAgcggc                                                                               ]


>consensus_15182#1 AAGAACAAACCGCCTCCAAAAATCTAGGGTTTCCACCCGCGCGCGACGCGATTCAGGTGT AGCAGCAGCGGCAGAGGGTGATGGCGGCGGCGGCGCCGGCGGACGCGAAGGCGGAGGCGG CCAAGATGGACCTCCTCGAGGACGACGACGAGTTCGAGGAGTTTGAGATCGACCAAGAAT GGGATGACAAGGAGGATGGTGATGAGGCCATCCAGCAATGGGAGGATGATTGGGATGATG ACGACGTCAATGACGACTTCTCGCTTCAGCTGAGGAAGGAGCTGGAGGAATGCAACACCC AGAAGATCTGAACTACTTTTTTTTCCCAGTTATGTTTAGCTGTAGCACCTATGCTGGGTC AGGCACTTTTGTACCCTTTGTGCCCCATTGCTTTCTCAACCTGCAATGTTCCTACTATAC TCCTACTTGTGTGCTGAAACCTGCGATCAAATTTAATTTGTGAAAGGGTTAAAACCAAGT TGGTGGAAAAAAAATGGTTCTCTATTGTTGGTAACTTCGAGTTCGAAAATCGGGGCTAAT AAGCGTTGTCCCTGTTGGTCAAAAAAAAAAA



consensusID : consensus_15182#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 490
fasta sequence
                              [CTTCCCCCGGGGGTTAATTTCTTCCGGTTTAGGATCCCCCGGTGTCGGGATTCGGCGGAATGCCGATCGGCCGCCGGGAGCGGCCACAGATGGACCTGCCTTCGAGGACTGACGACGAGTTTCGAGGATTTGAGATCGACCACAGAATGGGATTACACAGGAAGAAGCAAACGAGCCATTCAACCACATGGGAGGATGACTGGGATGACGATGATTGTCACATGACGACTTTCTCTCTGCAGCTCACGGAAAGAGCTGGAGAGCCATCCCCTCGAAGAACTAGAACTTGTGGTCTTGTATTCCGTACTTTCAGATAGGAATGGTATCTGCTGGATTTGGCATGTTTACTGTGTATATTTACCCACTCGAGCCTTTTGCTTGTTCTGTGGTAACGCCTTTCCGTTATACCTTTTATTACCCAATACGGTTCATAAAACTATATTGCCTATGTCTAGAAAGTGGTATCGGTTGTAGAACCGTAATCCATCAA]

[+] EMBL BI796225             [CTTCCCCCGGGGGTTAATTTCTTCCGGTTTAGGATCCCCCGGTGTCGGGATTCGGCGGAATGCCGATCGGCCGCCGGGAGCGGCCACAGATGGACCTGCCTTCGAGGACTGACGACGAGTTTCGAGGATTTGAGATCGACCACAGAATGGGATTACACAGGAAGAAGCAAACGAGCCATTCAACCACATGGGAGGATGACTGGGATGACGATGATTGTCACATGACGACTTTCTCTCTGCAGCTCACGGAAAGAGCTGGAGAGCCATCCCCTCGAAGAACTAGAACTTGTGGTCTTGTATTCCGTACTTTCAGATAGGAATGGTATCTGCTGGATTTGGCATGTTTACTGTGTATATTTACCCACTCGAGCCTTTTGCTTGTTCTGTGGTAACGCCTTTCCGTTATACCTTTTATTACCCAATACGGTTCATAAAACTATATTGCCTATGTCTAGAAAGTGGTATCGGTTGTAGAACCGTAATCCATCAA]


>consensus_15182#2 CTTCCCCCGGGGGTTAATTTCTTCCGGTTTAGGATCCCCCGGTGTCGGGATTCGGCGGAA TGCCGATCGGCCGCCGGGAGCGGCCACAGATGGACCTGCCTTCGAGGACTGACGACGAGT TTCGAGGATTTGAGATCGACCACAGAATGGGATTACACAGGAAGAAGCAAACGAGCCATT CAACCACATGGGAGGATGACTGGGATGACGATGATTGTCACATGACGACTTTCTCTCTGC AGCTCACGGAAAGAGCTGGAGAGCCATCCCCTCGAAGAACTAGAACTTGTGGTCTTGTAT TCCGTACTTTCAGATAGGAATGGTATCTGCTGGATTTGGCATGTTTACTGTGTATATTTA CCCACTCGAGCCTTTTGCTTGTTCTGTGGTAACGCCTTTCCGTTATACCTTTTATTACCC AATACGGTTCATAAAACTATATTGCCTATGTCTAGAAAGTGGTATCGGTTGTAGAACCGT AATCCATCAA



consensusID : consensus_15182#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 449
fasta sequence
                              [GGNGTTTTTGAAGATTCGGACCNAAGAATTGGGGATTGNACAAGGGAAAGAAGGCCAACGGAGGCCAGTTTCCAGCCAATGGGGGAGGGATGACTGGGGATGNACCGNATGATGTCCAATGACGACTNCTCTCTGCAGCTCCAGGAAAGAGCTGGAGAGCATCCCATCGAAGAACTAGAACTTGTGGTCTTGTATTCAGTACTTTCAGATAGGAAGTGGTATCTGCTGGATTTGGCATGTTTACTGTTATATTTACCAACTCGAGCATTTTGCTTGTTCTGTGGTATGCCTTTCCGTTATACATTTTATTACCAAATACGGTTCATAAAACTATATTGCCTATGTCTAGAAAGTGGTATCGGTTGTAGAACCGTAATCCATCAACTGGCTGAACCTTTTTGTTCCGTGAATGCAGAAAGGCCATTGCTTNGTGTTAAAAAAAAAAAAAA]

[+] EMBL AU029956             [GGNGTTTTTGAAGATTCGGACCNAAGAATTGGGGATTGNACAAGGGAAAGAAGGCCAACGGAGGCCAGTTTCCAGCCAATGGGGGAGGGATGACTGGGGATGNACCGNATGATGTCCAATGACGACTNCTCTCTGCAGCTCCAGGAAAGAGCTGGAGAGCATCCCATCGAAGAACTAGAACTTGTGGTCTTGTATTCAGTACTTTCAGATAGGAAGTGGTATCTGCTGGATTTGGCATGTTTACTGTTATATTTACCAACTCGAGCATTTTGCTTGTTCTGTGGTATGCCTTTCCGTTATACATTTTATTACCAAATACGGTTCATAAAACTATATTGCCTATGTCTAGAAAGTGGTATCGGTTGTAGAACCGTAATCCATCAACTGGCTGAACCTTTTTGTTCCGTGAATGCAGAAAGGCCATTGCTTNGTGTTAAAAAAAAAAAAAA]


>consensus_15182#3 GGNGTTTTTGAAGATTCGGACCNAAGAATTGGGGATTGNACAAGGGAAAGAAGGCCAACG GAGGCCAGTTTCCAGCCAATGGGGGAGGGATGACTGGGGATGNACCGNATGATGTCCAAT GACGACTNCTCTCTGCAGCTCCAGGAAAGAGCTGGAGAGCATCCCATCGAAGAACTAGAA CTTGTGGTCTTGTATTCAGTACTTTCAGATAGGAAGTGGTATCTGCTGGATTTGGCATGT TTACTGTTATATTTACCAACTCGAGCATTTTGCTTGTTCTGTGGTATGCCTTTCCGTTAT ACATTTTATTACCAAATACGGTTCATAAAACTATATTGCCTATGTCTAGAAAGTGGTATC GGTTGTAGAACCGTAATCCATCAACTGGCTGAACCTTTTTGTTCCGTGAATGCAGAAAGG CCATTGCTTNGTGTTAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_15182#0      ACATCGACTCCTATCGGCGGTCGCGCGAGCTCCAGCGCCAAGGGGATCCGTTGCGTCCGG 60
consensus_15182#3      ------------------------------------------------------------
consensus_15182#2      -----------------------------------------------------CTTCCCC 7
consensus_15182#1      --------------AAGAACAAACCGCCTCCAAAAATCTAGGGTTTCCACCCGCGCGCGA 46
                                                                                   

consensus_15182#0      CGGGGGTTAATTTCTTGCGGTTGTAGGATCCCCGATGGCGGA--TACGGCGAAGGCCGAT 118
consensus_15182#3      ------------------------------------------------------------
consensus_15182#2      CGGGGGTTAATTTCTTCCGGTTTAGGATCCCCCGGTGTCGGGATTCGGCGGAATGCCGAT 67
consensus_15182#1      CGCGATTCAGGTGTAGCAGCAGCGGCAGAGGGTGATGGCGGC--GGCGGCGCCGGCGGAC 104
                                                                                   

consensus_15182#0      GCGGCGGCGGAGGCGGCCAAGATGGA---CCTGCTCGAGGACG-ACGACGAGTTCGAGGA 174
consensus_15182#3      ------------------------GG---NGTTTTTGAAGATT-CGGAC-----CNAAGA 27
consensus_15182#2      CGGCCGCCGGGAGCGGCCACAGATGGACCTGCCTTCGAGGACTGACGACGAGTTTCGAGG 127
consensus_15182#1      GCGAAGGCGGAGGCGGCCAAGATGGA---CCTCCTCGAGGACG-ACGACGAGTTCGAGGA 160
                                               *         * ** **     ***         * 

consensus_15182#0      GTTTGAGATCGACCA-AGAATGGGATGACAAGGAAGAAGGCAACGAGGCAGTTCAGCAA- 232
consensus_15182#3      ATTGGGGATTGNACA-AGGGAAAGAAGGCCA--ACGGAGGCCAGTTTCCAGC-CAATGG- 82
consensus_15182#2      ATTTGAGATCGACCACAGAATGGGATTACACAGGAAGAAGCAAACGAGCCATTCAACCAC 187
consensus_15182#1      GTTTGAGATCGACCA-AGAATGGGATGACAAGGAGGATGGTGATGAGGCCATCCAGCAA- 218
                        ** * *** *  ** **     **   *          *  *     *    **     

consensus_15182#0      -TGGGAGGATGACTGGG-ATGAC---GATGAT-GTC-AATGACGACTT-CTCTCTGCAGC 284
consensus_15182#3      -GGGAGGGATGACTGGGGATGNACCGNATGAT-GTCCAATGACGACTN-CTCTCTGCAGC 139
consensus_15182#2      ATGGGAGGATGACTGGG-ATGAC---GATGATTGTCACATGACGACTTTCTCTCTGCAGC 243
consensus_15182#1      -TGGGAGGATGATTGGG-ATGAT---GACGAC-GTC-AATGACGACTT-CTCGCTTCAGC 270
                         **  ****** **** ***      * **  ***  *********  *** ** ****

consensus_15182#0      TC-AGGAAAGAGCTGGAGAGC-ATCCCATCGAAGAACTAGAACTTGTGGTCTTGTATTCA 342
consensus_15182#3      TCCAGGAAAGAGCTGGAGAGC-ATCCCATCGAAGAACTAGAACTTGTGGTCTTGTATTCA 198
consensus_15182#2      TCACGGAAAGAGCTGGAGAGCCATCCCCTCGAAGAACTAGAACTTGTGGTCTTGTATTCC 303
consensus_15182#1      TG-AGGAAGGAGCTGGAGGAATGCAACACCCAGAAGATCTGAACTACTTTTTTTTCCCAG 329
                       *   **** *********        *  * *  *  *   *  *    * ** *     

consensus_15182#0      GTACTTTCAGATAGGAAGTGGTATCTGCTGGATTTGGCATGTTTACTGT-TATATTTACC 401
consensus_15182#3      GTACTTTCAGATAGGAAGTGGTATCTGCTGGATTTGGCATGTTTACTGT-TATATTTACC 257
consensus_15182#2      GTACTTTCAGATAGGAA-TGGTATCTGCTGGATTTGGCATGTTTACTGTGTATATTTACC 362
consensus_15182#1      TTATGTTTAGCTGTAGC---ACCTATGCTGGGTCAGGCACTTTTGTACCCTTTGT----- 381
                        **  ** ** *           * ****** *  ****  ***      * * *     

consensus_15182#0      AACTCGAGCATTTTGCTTGTTCTGTGGTA-TGCCTTTCCGTTATACATTTTATTACCAAA 460
consensus_15182#3      AACTCGAGCATTTTGCTTGTTCTGTGGTA-TGCCTTTCCGTTATACATTTTATTACCAAA 316
consensus_15182#2      CACTCGAGCCTTTTGCTTGTTCTGTGGTAACGCCTTTCCGTTATACCTTTTATTACCCAA 422
consensus_15182#1      -GCCCCATTGCTTT-CTCAACCTGCAATGTTCCTACTATACTCCTACTTGTGT-GCTGAA 438
                         * * *    *** **    ***   *    *   *    *     ** * *  *  **

consensus_15182#0      TACGGTTCATAAAACTATATTGCCTATGTCTAGAAAGTGGTATCGGTTGTAGAACCGTAA 520
consensus_15182#3      TACGGTTCATAAAACTATATTGCCTATGTCTAGAAAGTGGTATCGGTTGTAGAACCGTAA 376
consensus_15182#2      TACGGTTCATAAAACTATATTGCCTATGTCTAGAAAGTGGTATCGGTTGTAGAACCGTAA 482
consensus_15182#1      ACCTGCGATCAAATTTAATTTGTGAAAGGGTTAAAACCAA-GTTGGTGGAAAAAAAATGG 497
                         * *     ***  **  ***   * *  *  ***      * *** * * **   *  

consensus_15182#0      TCCATCAACTGGCTGAACCTTTTTGTTCCGTGAATGCAG--AAAG-CCATTGCTTAGTGT 577
consensus_15182#3      TCCATCAACTGGCTGAACCTTTTTGTTCCGTGAATGCAG--AAAGGCCATTGCTTNGTGT 434
consensus_15182#2      TCCATCAA---------------------------------------------------- 490
consensus_15182#1      TTC-TCTATTGTTGGTAACTTCGAGTTCGAAAATCGGGGCTAATAAGCGTTG-TCCCTGT 555
                       * * ** *                                                    

consensus_15182#0      TTTTTTTATCTAATTAACTGTGAAGATAATATGTTTGTTAAAAA 621
consensus_15182#3      TAAAAAAAAAAAAAA----------------------------- 449
consensus_15182#2      --------------------------------------------
consensus_15182#1      TGGTCAAAAAAAAAAA---------------------------- 571
                                                                   




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)