These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15225#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 1614 fasta sequence [CTCTCGCTCGCACACAACTAATAACCAACGAAACCACGAGCAGCGGCTGATCGGTAAGCGGTAGTGGTAGTAGTAGTTTCGTTTGTACGTTGACCCAAGCAGCAGATGCCAATTGCAGCAGCCGCGGTCACCTCGCCACCGGCCGCCGCGCAGGTGCACGGTGTCGTGCCAAGGCATGCCTCGCCGACGCCACAGCAGCGGGCGGCGCCGCGGCGGGAGCAGTCGCCGCTGAACCCGAGCTCGCAGTCGATCCGGTCGGCCTCCTCCGGCACCGAGCTCGCAGGTTCCGCGGCGACGGAGGCCTCCCGGGCGCACATCGCCAACCTTGACCGGGTTCTCGGGAAGCCACCGCAGGTGCCGAGGCCGGCGAGCCACGCGGCGGCGAGCAAGCAGGAGCGGCAGCAGCAGGACGGGGAGCTGGAGCCGCTCAACGTCAGGCACGGCCTGCTCAACGCGCTCAACCTGTCCTTCTTCGTGCCCATGCCCGGGATGCGGGCCCGCACCGCCGCCGACGAGCACATGTCGCCTCGCAGCCTCATGCACATGCAGCAGCTCCTCTCCGCCGACTCCCCGCGCGCCTCGCCGAGGAGCACCATCGCGCCGCGCTGGCGCAGCCT-CCACGGGGAAGACGGCTGGGCCGGCCTCCTCGACCCGCTCGACTCCGACCTCCGCCGCGAGCTCCTCCGCTACGGCGACTTCGTCCAGGCGGCGTACCAGGCGTTCCACTCGCTGCCCACCGCGTCGGCGAGGCACCGCGGGCTCATGCTCCCCGACCGCTCCTACCGCCCGACGCGGAGCCTCTTCGCCACCTCGGCGCTGTCCATGCCGCCGTGGGCGAAGCGCCCCAACACCCCCGAGTGGCTCACGCAGCAGTCCAACTGGATCGGATACGTCGCCGTGTGCGAGTCCGAGCGGGAGGTCGCCCGCATGGGCCGCCGCGACATCGCCATCGTGCTGCGCGGGACGGCCACCTGCCTCGAGTGGGCGGAGAACCTGCGCGCCTCGCTCGTGCCTCTCGACGGCGAGAGCGGCGAAGGCGGCGGGCAGGAGGAGCCCAAGGTGGCACGGGGATTCCGGAGCCTGTACAAGACGGCAGGGGAGAAGGTGAAGAGCCTCTCGGAGGAGGTCATGGGCGAGGTGCGGCGGCTCATGGAGAAGTACAAGGGCGAGGAGCTCAGCATCACGGTCGTCGGCCACAGCCTCGGCGGCGCCCTGGCGCTCCTCGTGGCCGACGAGATCGCCACCACCGTCCCCGACGCGCCGCCCGTCGCCGTGGTCTCCTTCGGCGGGCCC-AAGGTCGGGAACGCCGCGTTCGTGGACAAGCTCC-AGAAG-AACGGCAGGGTGAACGTCCTGCGCATCGTCAACGCC-GGCGACATGGTCACCAAGGTGCCCGGCGTGGCGCCGCGCCTGCC-GCTCACCAAGGAGCAGTACCAGCACGTCGGCGCGGAGCTGCGCATCGACAGCAAGAACTCGCCGTGCCTCCGCCCCGACGCCGGCCCGGCGTGCCGCCACGACCTGGAGGCGTACCTGCACCTCATCGACGGGTTCACGGGGACGGGCCGCCCGTTCCGGCACACGGGGGCGAAGGTGATCCCGTTTTTAAGTTTAANAGGG] [+] EMBL AK098925 [CTCTCGCTCGCACACAACTAATAACCAACGAAACCACGAGCAGCGGCTGATCGGTAAGCGGTAGTGGTAGTAGTAGTTTCGTTTGTACGTTGACCCAAGCAGCAGATGCCAATTGCAGCAGCCGCGGTCACCTCGCCACCGGCCGCCGCGCAGGTGCACGGTGTCGTGCCAAGGCATGCCTCGCCGACGCCACAGCAGCGGGCGGCGCCGCGGCGGGAGCAGTCGCCGCTGAACCCGAGCTCGCAGTCGATCCGGTCGGCCTCCTCCGGCACCGAGCTCGCAGGTTCCGCGGCGACGGAGACCTCCCGGGCGCACATCGCCAACCTTGACCGGGTTCTCGGGAAGCCACCGCAGGTGCCGAGGCCGGCGAGCCACGCGGCGGCGAGCAAGCAGGAGCGGCAGCAGCAGGACGGGGAGCTGGAGCCGCTCAACGTCAGGCACGGCCTGCTCAACGCGCTCAACCTGTCCTTCTTCGTGCCCATGCCCGGGATGCGGGCCCGCACCGCCGCCGACGAGCACATGTCGCCTCGCAGCCTCATGCACATGCAGCAGCTCCTCTCCGCCGACTCCCCGCGCGCCTCGCCGAGGAGCACCATCGCGCCGCGCTGGCGCAGCCT CCACGGGGAAGACGGCTGGGCCGGCCTCCTCGACCCGCTCGACTCCGACCTCCGCCGCGAGCTCCTCCGCTACGGCGACTTCGTCCAGGCGGCGTACCAGGCGTTCCACTCGCTGCCCACCGCGTCGGCGAGGCACCGCGGGCTCATGCTCCCCGACCGCTCCTACCGCCCGACGCGGAGCCTCTTCGCCACCTCGGCGCTGTCCATGCCGCCGTGGGCGAAGCGCCCCAACACCCCCGAGTGGCTCACGCAGCAGTCCAACTGGATCGGATACGTCGCCGTGTGCGAGTCCGAGCGGGAGGTCGCCCGCATGGGCCGCCGCGACATCGCCATCGTGCTGCGCGGGACGGCCACCTGCCTCGAGTGGGCGGAGAACCTGCGCGCCTCGCTCGTGCCTCTCGACGGCGAGAGCGGCGAAGGCGGCGGGCAGGAGGAGCCCAAGGTGGCACGGGGATTCCGGAGCCTGTACAAGACGGCAGGGGAGAAGGTGAAGAGCCTCTCGGAGGAGGTCATGGGCGAGGTGCGGCGGCTCATGGAGAAGTACAAGGGCGAGGAGCTCAGCATCACGGTCGTCGGCCACAGCCTCGGCGGCGCCCTGGCGCTCCTCGTGGCCGACGAGATCGCCACCACCGTCCCCGACGCGCCGCCCGTCGCCGTGGTCTCCTTCGGCGGGCCC AAGGTCGGGAACGCCGCGTTCGTGGACAAGCTCC AGAAG AACGGCAGGGTGAACGTCCTGCGCATCGTCAACGCC GGCGACATGGTCACCAAGGTGCCCGGCGTGGCGCCGCGCCTGCC GCTCACCAAGGAGCAGTACCAGCACGTCGGCGCGGAGCTGCGCATCGACAGCAAGAACTCGCCGTGCCTCCGCCCCGACGCCGGCCCGGCGTGCCGCCACGACCTGGAGGCGTACCTGCACCTCATCGACGGGTTCACGGGGACGGGCCGCCCGTTCCGGCAC ] [+] EMBL AK064950 [CTCTCGCTCGCACACAACTAATAACCAACGAAACCACGAGCAGCGGCTGATCGGTAAGCGGTAGTGGTAGTAGTAGTTTCGTTTGTACGTTGACCCAAGCAGCAGATGCCAATTGCAGCAGCCGCGGTCACCTCGCCACCGGCCGCCGCGCAGGTGCACGGTGTCGTGCCAAGGCATGCCTCGCCGACGCCACAGCAGCGGGCGGCGCCGCGG GGGAGCAGTCGCCGCTGAACCCGAGCTCGCAGTCGATCCGGTCGGCCTCCTCCGGCACCGAGCTCGCAGGTTCCGCGGCGACGGAGGCCTCCCGGGCGCACATCGCCAACCTTGACCGGGTTCTCGGGAAGCCACCGCAGGTGCCGAGACCGGCGAGCCACGCGGCGGCGAGCAAGCAGGAGCGGCAGCAGCAGGACGGGGAGCTGGAGCCGCTCAACGTCAGGCACGGCCTGCTCAACGCGCTCAACCTGTCCTTCTTCGTGCCCATGCCCGGGATGCGGGCCCGCACCGCCGCCGACGAGCACATGTCGCCTCGCAGCCTCATGCACATGCAGCAGCTCCTCTCCGCCGACTCCCCGCGCGCCTCGCCGAGGAGCACCATCGCGCCGCGCTGGCGCAGCCT CCACGGGGAAGACGGCTGGGCCGGCCTCCTCGACCCGCTCGACTCCGACCTCCGCCGCGAGCTCCTCCGCTACGGCGACTTCGTCCAGGCGGCGTACCAGGCGTTCCACTCGCTGCCCACCGCGTCGGCGAGGCACCGCGGGCTCATGCTCCCCGACCGCTCCTACCGCCCGACGCGGAGCCTCTTCGCCACCTCGGCGCTGTCCATGCCGCCGTGGGCGAAGCGCCCCAACACCCCCGAGTGGCTCACGCAGCAGTCCAACTGGATCGGATACGTCGCCGTGTGCGAGTCCGAGCGGGAGGTCGCCCGCATGGGCCGCCGCGACATCGCCATCGTGCTGCGCGGGACGGCCACCTGCCTCGAGTGGGCGGAGAACCTGCGCGCCTCGCTCGTGCCTCTCGACGGCGAGAGCGGCGAAGGCGGCGGGCAGGAGGAGCCCAAGGTGGCACGGGGATTCCGGAGCCTGTACAAGACGGCAGGGGAGAAGGTGAAGAGCCTCTCGGAGGAGGTCATGGGCGAGGTGCGGCGGCTCATGGAGAAGTACAAGGGCGAGGAGCTCAGCATCACGGTCGTCGGCCACAGCCTCGGCGGCGCCCTGGCGCTCCTCGTGGCCGACGAGATCGCCACCACCGTCCCCGACGCGCCGCCCGTCGCCGTGGTCTCCTTCGGCGGGCCC AAGGTCGGGAACGCCGCGTTCGTGGACAAGCTCC AGAAG AACGGCAGGGTGAACGTCCTGCGCATCGTCAACGCC GGCGACATGGTCACCAAGGTGCCCGGCGTGGCGCCGCGCCTGCC GCTCACCAAGGAGCAGTACCAGCACGTCGGCGCGGAGCTGCGCATCGACAGCAAGAACTCGCCGTGCCTCCGCCCCGACGCCGGCCCGGCGTGCCGCCACGACCTGGAGGCGTACCTGCACCTCATCGACGGGTTCACGGGGACGGGCCGCCCGTTCCGGCAC ] [+] EMBL AK104793 [ TCTCGCTCGCACACAACTAATAACCAACGAAACCACGAGCAGCGGCTGATCGGTAAGCGGTAGTGGTAGTAGTAGTTTCGTTTGTACGTTGACCCAAGCAGCAGATGCCAATTGCAGCAGCCGCGGTCACCTCGCCACCGGCCGCCGCGCAGGTGCACGGTGTCGTGCCAAGGCATGCCTCGCCGACGCCACAGCAGCGGGCGGCGCCGCGGCGGGAGCAGTCGCCGCTGAACCCGAGCTCGCAGTCGATCCGGTCGGCCTCCTCCGGCACCGAGCTCGCAGGTTCCGCGGCGACGGAGGCCTCCCGGGCGCACATCGCCAACCTTGACCGGGTTCTCGGGAAGCCACCGCAGGTGCCGAGGCCGGCGAGCCACGCGGCGGCGAGCAAGCAGGAGCGGCAGCAGCAGGACGGGGAGCTGGAGCCGCTCAACGTCAGGCACGGCCTGCTCAACGCGCTCAACCTGTCCTTCTTCGTGCCCATGCCCGGGATGCGGGCCCGCACCGCCGCCGACGAGCACATGTCGCCTCGCAGCCTCATGCACATGCAGCAGCTCCTCTCCGCCGACTCCCCGCGCGCCTCGCCGAGGAGCACCATCGCGCCGCGCTGGCGCAGCCT CCACGGGGAAGACGGCTGGGCCGGCCTCCTCGACCCGCTCGACTCCGACCTCCGCCGCGAGCTCCTCCGCTACGGCGACTTCGTCCAGGCGGCGTACCAGGCGTTCCACTCGCTGCCCACCGCGTCGGCGAGGCACCGCGGGCTCATGCTCCCCGACCGCTCCTACCGCCCGACGCGGAGCCTCTTCGCCACCTCGGCGCTGTCCATGCCGCCGTGGGCGAAGCGCCCCAACACCCCCGAGTGGCTCACGCAGCAGTCCAACTGGATCGGATACGTCGCCGTGTGCGAGTCCGAGCGGGAGGTCGCCCGCATGGGCCGCCGCGACATCGCCATCGTGCTGCGCGGGACGGCCACCTGCCTCGAGTGGGCGGAGAACCTGCGCGCCTCGCTCGTGCCTCTCGACGGCGAGAGCGGCGAAGGCGGCGGGCAGGAGGAGCCCAAGGTGGCACGGGGATTCCGGAGCCTGTACAAGACGGCAGGGGAGAAGGTGAAGAGCCTCTCGGAGGAGGTCATGGGCGAGGTGCGGCGGCTCATGGAGAAGTACAAGGGCGAGGAGCTCAGCATCACGGTCGTCGGCCACAGCCTCGGCGGCGCCCTGGCGCTCCTCGTGGCCGACGAGATCGCCACCACCGTCCCCGACGCGCCGCCCGTCGCCGTGGTCTCCTTCGGCGGGCCC AAGGTCGGGAACGCCGCGTTCGTGGACAAGCTCC AGAAG AACGGCAGGGTGAACGTCCTGCGCATCGTCAACGCC GGCGACATGGTCACCAAGGTGCCCGGCGTGGCGCCGCGCCTGCC GCTCACCAAGGAGCAGTACCAGCACGTCGGCGCGGAGCTGCGCATCGACAGCAAGAACTCGCCGTGCCTCCGCCCCGACGCCGGCCCGGCGTGCCGCCACGACCTGGAGGCGTACCTGCACCTCATCGACGGGTTCACGGGGACGGGCCGCCCGTTCCGGCAC ] [+] EMBL AK106154 [ TCTCGCTCGCACACAACTAATAACCAACGAAACCACGAGCAGCGGCTGATCGGTAAGCGGTAGTGGTAGTAGTAGTTTCGTTTGTACGTTGACCCAAGCAGCAGATGCCAATTGCAGCAGCCGCGGTCACCTCGCCACCGGCCGCCGCGCAGGTGCACGGTGTCGTGCCAAGGCATGCCTCGCCGACGCCACAGCAGCGGGCGGCGCCGCGGCGGGAGCAGTCGCCGCTGAACCCGAGCTCGCAGTCGATCCGGTCGGCCTCCTCCGGCACCGAGCTCGCAGGTTCCGCGGCGACGGAGGCCTCCCGGGCGCACATCGCCAACCTTGACCGGGTTCTCGGGAAGCCACCGCAGGTGCCGAGGCCGGCGAGCCACGCGGCGGCGAGCAAGCAGGAGCGGCAGCAGCAGGACGGGGAGCTGGAGCCGCTCAACGTCAGGCACGGCCTGCTCAACGCGCTCAACCTGTCCTTCTTCGTGCCCATGCCCGGGATGCGGGCCCGCACCGCCGCCGACGAGCACATGTCGCCTCGCAGCCTCATGCACATGCAGCAGCTCCTCTCCGCCGACTCCCCGCGCGCCTCGCCGAGGAGCACCATCGCGCCGCGCTGGCGCAGCCT CCACGGGGAAGACGGCTGGGCCGGCCTCCTCGACCCGCTCGACTCCGACCTCCGCCGCGAGCTCCTCCGCTACGGCGACTTCGTCCAGGCGGCGTACCAGGCGTTCCACTCGCTGCCCACCGCGTCGGCGAGGCACCGCGGGCTCATGCTCCCCGACCGCTCCTACCGCCCGACGCGGAGCCTCTTCGCCACCTCGGCGCTGTCCATGCCGCCGTGGGCGAAGCGCCCCAACACCCCCGAGTGGCTCACGCAGCAGTCCAACTGGATCGGATACGTCGCCGTGTGCGAGTCCGAGCGGGAGGTCGCCCGCATGGGCCGCCGCGACATCGCCATCGTGCTGCGCGGGACGGCCACCTGCCTCGAGTGGGCGGAGAACCTGCGCGCCTCGCTCGTGCCTCTCGACGGCGAGAGCGGCGAAGGCGGCGGGCAGGAGGAGCCCAAGGTGGCACGGGGATTCCGGAGCCTGTACAAGACGGCAGGGGAGAAGGTGAAGAGCCTCTCGGAGGAGGTCATGGGCGAGGTGCGGCGGCTCATGGAGAAGTACAAGGGCGAGGAGCTCAGCATCACGGTCGTCGGCCACAGCCTCGGCGGCGCCCTGGCGCTCCTCGTGGCCGACGAGATCGCCACCACCGTCCCCGACGCGCCGCCCGTCGCCGTGGTCTCCTTCGGCGGGCCC AAGGTCGGGAACGCCGCGTTCGTGGACAAGCTCC AGAAG AACGGCAGGGTGAACGTCCTGCGCATCGTCAACGCC GGCGACATGGTCACCAAGGTGCCCGGCGTGGCGCCGCGCCTGCC GCTCACCAAGGAGCAGTACCAGCACGTCGGCGCGGAGCTGCGCATCGACAGCAAGAACTCGCCGTGCCTCCGCCCCGACGCCGGCCCGGCGTGCCGCCACGACCTGGAGGCGTACCTGCACCTCATCGACGGGTTCACGGGGACGGGCCGCCCGTTCCGGCAC ] [+] EMBL CA754241 [ GCGGCTGATCGGTAAGCGGTAGTGGTAGTAGTAGTTTCGTTTGTACGTTGACCCAAGCAGCAGATGCCAATTGCAGCAGCCGCGGTCACCTCGCCACCGGCCGCCGCGCAGGTGCACGGTGTCGTGCCAAGGCATGCCTCGCCGACGCCACAGCAGCGGGCGGCGCCGCGGCGGGAGCAGTCGCCGCTGAACCCGAGCTCGCAGTCGATCCGGTCGGCCTCCTCCGGCACCGAGCTCGCAGGTTCCGCGGCGACGGAGGCCTCCCGGGCGCACATCGCCAACCTTGACCGGGTTCTCGGGAAGCCACCGCAGGTGCCGAGGCCGGCGAGCCACGCGGCGGCGAGCAAGCAGGAGCGGCAGCAGCAGGACGGGGAGCTGGAGCCGCTCAACGTCAGGCACGGCCTGCTCAACGCGCTCAACCTGTCCTTCTTCGTGCCCATGCCCGGGATGCGGGCCCGCACCGCCGCCGACGAGCACATGTCGCCTCGCAGCCTCATGCACATGCAGCAGCTCCTCTCCGCCGACTCCCCGCGCGCCTCGCCGAGGAGCACCATCGCGCCGCGCTGGCGCAGCCTCCCACGGGGAAGACGGCTGGGCCGGgc ] [+] EMBL AU064146 [ GGAGCTCAGCATCACGGTCGTCGGCCACAGCCTCGGCGGCGCCCTGGCG TCCTCGTGGCCGACGAGATCGCCACCACCGTCCCCGACGCGCCGCCCGTCGCCGTGGTCTCCTTCGGCGGGCCC AAGGTCGGGAACGCCGCGTTCGTGGACAAGCTCC AGAAG AACGGCAGGGTGAACGTCCTGCGCATCGTCAACGCC GGCGACATGGTCACCAAGGTGCCCGGCGTGGCGCCGCGCCTGCC GCTCACCAAGGAGCAGTACCAGCACGTCGGCGCGGANTTGCGCATCGACAGCAAGAACTCGCCGTGCCTNCGCCCCGACGGCGGCCCGGGTTGCCG CACGACCTTGAGGCGTACCTG AACTNATCGACGGGTT AAGGGGACGGGCCG CCGTTCCGGAAGACGGGGGCGAAGGTGATCCCGTTTTTAAGTTTAANAGGG] [+] EMBL AU064563 [ GGAGCTCAGCATCACGGTCGTCGGCCACAGCCTCGGCGGCGNCCTGGCG TCCTCGTGGCCGACGAGATCGCCACCANCGTCCCCGACGCGCCGCCCGTCGCCGTGGTCTCCTTCGGCGGGCCC AAGGTCGGGAACGCCGNGTTCGTGGACAAGCTCC AGAAG AACGGCAGGGTGAACGTCCTGCGCATAGTCAACGCC GGCGACATGGTCACCAAGGTGCCCNGCGTNGCGTCGCGCCTGCC GGTCACCAAGGAGCAGTACCAGCACGTCGGCGCGGAGTNCCGCATC ] [+] EMBL AU064925 [ GGAGCTCAGCATCACGGTCGTCGGCCACAGCCTCGGCGGCG CCTGGCGGTCCTCGTGGCCGACGAGATCGCCACCACCGTCCCCGACGCGCCGCCCGTCGCCGTGGTCTCCTTCGGCGGGCCC AAGGTCGGGAACGCCGCGTTCGTGGACAAGCTCC AGAAG AACGGCAGGGTGAACGTCCTGCGCATNGTCAACGCC GGCGACATGGTCACCAAGGTGCCCGGCGTGGCG CGCGCCTGCC GNTCACCAAGGAGCAGTANCAGCACGTC ] [+] EMBL AU065141 [ GGAGCTCAGCATCACGGTCGTCGGCCACAGCCTCGGCGGCGCCCTGGCGCTCCTCGTGGCCGACGAGATCGCCACCACCGTCCCCGACGCGCCGCCCGTCGCCGTGGTCTCCTTCGGCGGGCCC AAGGTCGGGAACGCCGCGTTCGTGGACAAGCTCC AGAAG AACGGCAGGGTGAACGTCCTGCGCATCGTCAACGCC GGCGACATGGTCACCAAGGTGCCCGGCGTTGCGCGGNGCCTTCCGGTTAACAAAGGAG ] [+] EMBL AU065117 [ GGAGCTCAGCATCACGGTCGTCGGCCACAGCCTCGGCGGCGCCCTGGCGCTCCTCGTGGCCGACGAGATCGCCACCACCGTCCCCGACGCGCCGCCCGTCGCCGTGGTCTCCTTCGGCGGGCCC AAGGTCGGGAACGCCGCGTTCGTGGACAAGCTCC AGAAGAAACGGCAGGGTGAACGTCCTGCGCATCGTCAACGCCNGGCNACATGGTCACCAAGGTGCCCGGCGTtngc ] [+] EMBL AU101257 [ GCCGTGGTCTCCTTCGGCGGGCCCAAAGGTCGGNAACGCCGCGTTCGTGGACAAGCTCCAAGAAG ACGGCAGGGTGAACGTCNTGCGCATCGTCAACGCC GGCGACATGGTCACCAAGGTGCCCGGCGTGGCGCCGCGCCTGCC GCTCACCAAGGAGCAGTACCAGCACGTCGGCGCGGAGCTGCGCATCGACAGCAAGAACTCGCCGTGCCTCCGCCCCGACGCCGGCCCGGCGTGCCGCCACGACCTGGAGGCGTACCTGCACCTCATCGACGGGTTCACGGGGACGGGCCGCCCGTTCCGGCAC ] consensusID : consensus_15225#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 544 fasta sequence [CCACCCAAGGGACCAGGTACCCAGCAACGTCCGGCCGGGAGCTGCGCATGCGACCAAGCCAAGAAACGTCGCCCGTGCCCTCCGCCCNTGACGCCCGNCCCGGCGTCCAGCCACGACCTGGAGGCGTACCTGCACACTCATCGACGGTTCACGGGGACAGGCCGCCANTGTTCCGGCACNNACGCGCCACAGCAGCGTGATCCAGGCTNCTNCAGTTCGCAGAGGGGGAACGTGAAGAAGGAGTACAGTGAACCAGCAGCCCAGGGAGCTCGGCAGTCGACCCCTCGGCANCACAGGTGGACAGTCAGCCCAGGACCATGGCAGTACCGGGGAACTGCGCCCGTCGCGAGCCCACTCCCTCCGTGAGACGACCGAGATTGACGTCTTCTTGCCAAGAGCCACTTAATTATGTAAATTTTTGTAGAAGCAAGACCTACAATTGCTTTCGTTAGTCCAGGGGGTGTCAGCGGGAAAAAAGATTTTCCCTTGTCACTTTGACGTATGTATGTACAAGTACATACCNAACTATTATACTTGCAAAAAA] [+] EMBL BI806983 [CCACCCAAGGGACCAGGTACCCAGCAACGTCCGGCCGGGAGCTGCGCATGCGACCAAGCCAAGAAACGTCGCCCGTGCCCTCCGCCCNTGACGCCCGNCCCGGCGTCCAGCCACGACCTGGAGGCGTACCTGCACACTCATCGACGGTTCACGGGGACAGGCCGCCANTGTTCCGGCACNNACGCGCCACAGCAGCGTGATCCAGGCTNCTNCAGTTCGCAGAGGGGGAACGTGAAGAAGGAGTACAGTGAACCAGCAGCCCAGGGAGCTCGGCAGTCGACCCCTCGGCANCACAGGTGGACAGTCAGCCCAGGACCATGGCAGTACCGGGGAACTGCGCCCGTCGCGAGCCCACTCCCTCCGTGAGACGACCGAGATTGACGTCTTCTTGCCAAGAGCCACTTAATTATGTAAATTTTTGTAGAAGCAAGACCTACAATTGCTTTCGTTAGTCCAGGGGGTGTCAGCGGGAAAAAAGATTTTCCCTTGTCACTTTGACGTATGTATGTACAAGTACATACCNAACTATTATACTTGCAAAAAA] consensusID : consensus_15225#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 399 fasta sequence [CGACCTGGAGGGGGTACTTGCACCTCATCGNCGGGTTCACGGGGACGGGCCGCCNGTTCCGGCANTAACGCGCGCCGCAGCGTGATCCGGGTTGCTGCAGTTGCAGAGGGGGAACGTGAAGAAGGAGTACGTGAACCGC-GCCCGGGAG-CTC-GGCGTCGACCCC-TCGGCG-CCGGT-GGACGTCGGCCGG-AGCATGGCGTACGGGAACTGCG-CCGTCGCGAG-CCCCTCCTCGTGAGACGACGAGA-TTGACGTC-TTCTTCCAAGAG-CCCTTAATTATGTAAATTTTTGTAGAAGCAGACCAACAATTCTTTCGTTAGTCAGGGGTGTCAGCGGGAAAAAAGATTTTCCCTTGTCATTTGACGTATGTATGTACAGTACATAAAAACTATTATACTTGCAAAAA] [+] EMBL AU184107 [CGACCTGGAGGGGGTACTTGCACCTCATCGNCGGGTTCACGGGGACGGGCCGCCNGTTCCGGCANTAACGCGCGCCGCAGCGTGATCCGGGTTGCTGCAGTTGCAGAGGGGGAACGTGAAGAAGGAGTACGTGAACCGC GCCCGGGAG CTCGGGCGTCGACCCC TCGGCG CCGGT GGACGTCGGCCGG AGCATGGCGTACGGGAACTGCG CCGTCGCGAG CCCCTCCTCGTGAGACGACGAGA TTGACGTC TTCTTCCAAGAG CCCTTAATTATGTAAATTTTTGTAGAAGCAGACCAACAATTCTTTCGTTAGTCAGGGGTGTCAGCGGGAAAAAAGATTTTCCCTTGTCATTTGACGTATGTATGTACAGTACATAAAAACTATTATACTTGCAAAAA] [+] EMBL AU094966 [ aCGGGTTCACGGGGACGGGCCGCC GTTCCGGCA CGACGCGCGCCNCAGCGTGATCC GGCTGCTGCAGTTGCAGAGGGGGAACNTGAAGAAGGAGTACGTGAACCGC GCCCGGGAG CTC GGCGTCGACCCC TCGGCG CCGGT GGACGTCGGCCGG AGCATGGCGTACGGGAACTGCG CCGTCGCGAG CCCCTCCTCGTGAGACGACGAGA TTGACGTC TTCTTCCAAGAG CCCTTAATTATGTAAATTTTTGTAGAAGCAGACCAACAATTCTTTCGTTAGTCAGGGGTGTCAGCGGGAAAAAAGATTTTCCCTTGTCATTTGACGTATGTATGTACAGTACATAAAAACTATTATACTTGCAAAAA] [+] EMBL AU174078 [ AGAGGGGGAACGTGAAGAAGGAGTACGTGAACCGCGGCCCGGGAGNCTC GGCGTCGACCCCTTNGGCGCCCGGTGGGACGTCGGCCGGAAGCATGGCGTACGGGAACTGCGCCCGTCGCGAGCCCCCTCCTCGTGAGACGACGAGATTTGACGTCTTTCTTCCAAGAGCCCCTTAATTATGTAAATTTTTGTAGAAGCAGACCAACAATTCTTTCGTTAGTCAGGGGTGTCAGCGGGAAAAAAGATTTTCCCTTGTCATTTGACGTATGTATGTACAGTACATAAAAACTATTATACTTGCAAAAA] [+] EMBL AU182862 [ AGAGGGGGAACGTGAAGAAGGAGTACGTGAACCGC GCCCGGGAG CTC GGCGTCGACCCC TCGGCG CCGGT GGACGTCGGCCGG AGCATGGCGTACGGGAACTGCG CCGTCGCGAG CCCCTCCTCGTGAGACGACGAGA TTGACGTC TTCTTCCAAGAG CCCTTAATTATGTAAATTTTTGTAGAAGCAGACCAACAATTCTTTCGTTAGTCAGGGGTGTCAGCGGGAAAAAAGATTTTCCCTTGTCATTTGACGTATGTATGTACAGTACATAAAAACTATTATACTTGCAAAAA] [+] EMBL AU183036 [ AGAGGGGGAACGTGAAGAAGGAGTACGTGAACCGC GCCCGGGAG CTC GGCGTCGACCCC TCGGCG CCGGT GGACGTCGGCCGG AGCATGGCGTACGGGAACTGCG CCGTCGCGAG CCCCTCCTCGTGAGACGACGAGA TTGACGTC TTCTTCCAAGAG CCCTTAATTATGTAAATTTTTGTAGAAGCAGACCAACAATTCTTTCGTTAGTCAGGGGTGTCAGCGGGAAAAAAGATTTTCCCTTGTCATTTGACGTATGTATGTACAGTACATAAAAACTATTATACTTGCAAAAA] [+] EMBL OSR08181A [ GAAGAAGGAGTACGTGAACCGC GCCCGGGAG CTC GGCGTCGACCCC TCGGCG CCGGT GGACGTCGGCCGG AGCATGGCGTACGGGAACTGCG CCGTCGCGAG CCCCTCCTCGTGAGACGACGAGA TTNACGTC TTCTTCCAAGAG CCCTTAATTATGTAAATTTTTGTAGAAGCAGACCAACAATTCTTTCGTTAGTCAGGGGTGTCAGCGGGAAAAAAGATTTTCCCTTGTCATTTGACGTATGTATGTACAGTACATAAAAACTATTATACTTGCAAAAA] consensusID : consensus_15225#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 299 fasta sequence [TAACCAACGAAACCACGAGCAGCGGCTGATCGGTAAGCGGTAGTGGTAGTAGTAGTTTCGTTTGTACGTTGACCCAAGCAGCAGATGCCAATTGCAGCAGCCGCGGTCACCTCGCCACCGGCCGCCGCGCAGGTGCACGGTGTCGTGCCAAGGCATGCCTCGCCGACGCCACAGCAGCGGGCGGCGCCGCGACGGAGGCCTCCCGGGCGCACATCGCCAACCTTGACCGGGTTCTCGGGAAGCCACCGNAGTCTCGTAGGCCGNCGAGCCACGCGGCGGCGAGCAAGCAGGAGCGGCAC] [+] EMBL OSS15138A [TAACCAACGAAACCACGAGCAGCGGCTGATCGGTAAGCGGTAGTGGTAGTAGTAGTTTCGTTTGTACGTTGACCCAAGCAGCAGATGCCAATTGCAGCAGCCGCGGTCACCTCGCCACCGGCCGCCGCGCAGGTGCACGGTGTCGTGCCAAGGCATGCCTCGCCGACGCCACAGCAGCGGGCGGCGCCGCGACGGAGGCCTCCCGGGCGCACATCGCCAACCTTGACCGGGTTCTCGGGAAGCCACCGNAGTCTCGTAGGCCGNCGAGCCACGCGGCGGCGAGCAAGCAGGAGCGGCAC] consensusID : consensus_15225#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 257 fasta sequence [GCTGCTCAGTTCCAGAGGGGGAAACGTGAAGAAAGGAGTACGTGAACCGCGCCCTCGGGATGTCTCGGCGTCGACACACACTCGGCCCCGGTGACTCGCCGGAGCATGGCGTACGGGAACTGCGCCGTCGCGAGCCCCTCCTCGTGAGACGACGAGATTGACGTCTTCTTCCAAGAGCCCTTAATTATGTAAATTTTTGTAGAAGCAGACCCACAATTCTTTCGTTTGTCAGGGTTTTCAACCGGGGAAAAAAGTAT] [+] EMBL BI811160 [GCTGCTCAGTTCCAGAGGGGGAAACGTGAAGAAAGGAGTACGTGAACCGCGCCCTCGGGATGTCTCGGCGTCGACACACACTCGGCCCCGGTGACTCGCCGGAGCATGGCGTACGGGAACTGCGCCGTCGCGAGCCCCTCCTCGTGAGACGACGAGATTGACGTCTTCTTCCAAGAGCCCTTAATTATGTAAATTTTTGTAGAAGCAGACCCACAATTCTTTCGTTTGTCAGGGTTTTCAACCGGGGAAAAAAGTAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15225#2 ------------------------------------------------------------ consensus_15225#4 ------------------------------------------------------------ consensus_15225#1 CCACCCAAGGGACCAGGTACCCAGCAACGTCCGGCCGGGAGCTGCGCATGCGACCAAGCC 60 consensus_15225#0 ------------------------------------------------------------ consensus_15225#3 ------------------------------------------------------------ consensus_15225#2 -----------------------------------------------------CGACCTG 7 consensus_15225#4 ------------------------------------------------------------ consensus_15225#1 AAGAAACGTCGCCCGTGCCCTCCGCCCNTGACGCCCGNCCCGGCGTCCAGCCACGACCTG 120 consensus_15225#0 --------------------------------------------------------CTCT 4 consensus_15225#3 ------------------------------------------------------------ consensus_15225#2 GAGGGGGTACTTGCACCTCATCGNCGGGTTCACGGGGACGGGCCGCCNGT--TCCGGCAN 65 consensus_15225#4 ------------------------------------------------------------ consensus_15225#1 GAGGCG-TACCTGCACACTCATCGACGGTTCACGGGGACAGGCCGCCANTGTTCCGGCAC 179 consensus_15225#0 CGCTCGCACACAACTAATAACCAACGAAACCACGAGCAGCGGCTGATCGGTAAGCGGTAG 64 consensus_15225#3 -----------------TAACCAACGAAACCACGAGCAGCGGCTGATCGGTAAGCGGTAG 43 consensus_15225#2 TAACGCGC-GCCGCAGCGTGATCCGGGTTGCTGCAGTTG-CAGAGGGGGAA-CGTGAAGA 122 consensus_15225#4 --------------------------GCTGCT-CAGTTC-CAGAGGGGGAAACGTGAAGA 32 consensus_15225#1 NNACGCGCCACAGCAGCGTGATCCAGGCTNCTNCAGTTCGCAGAGGGGGAA-CGTGAAGA 238 consensus_15225#0 TGGTA-GTAGTAGTTTCGTT-TGTACGTTGACCCAAGCAGCAGATGCCAATTGCAGCAGC 122 consensus_15225#3 TGGTA-GTAGTAGTTTCGTT-TGTACGTTGACCCAAGCAGCAGATGCCAATTGCAGCAGC 101 * * ** **** * * * ** consensus_15225#2 A-GGAGTAC-GTGA-ACC-GCGCCCGGGAG----CTCGGC-GTCGACCC---CTCGGCGC 170 consensus_15225#4 AAGGAGTAC-GTGA-ACC-GCGCCCTCGGGATGTCTCGGC-GTCGACACACACTCGGCCC 88 consensus_15225#1 A-GGAGTACAGTGA-ACCAGCAGCCCAGGGA--GCTCGGCAGTCGACCCCTCGGCANCAC 294 consensus_15225#0 CGCGGTCACCTCGCCACCGGCCGCCGCGCAGGTGCACGGT-GTCGTGCCAAGGCATGCCT 181 consensus_15225#3 CGCGGTCACCTCGCCACCGGCCGCCGCGCAGGTGCACGGT-GTCGTGCCAAGGCATGCCT 160 * ** * *** ** ** * * *** **** * * consensus_15225#2 CGGTGGAC-GTCGGC--C--GGAGCATGGC-GTAC--GGGAACTGCGCC-GTCGCGAGCC 221 consensus_15225#4 CGGTGA----CTCGC--C--GGAGCATGGC-GTAC--GGGAACTGCGCC-GTCGCGAGCC 136 consensus_15225#1 AGGTGGACAGTCAGC--CCAGGACCATGGCAGTACCGGGGAACTGCGCCCGTCGCGAGCC 352 consensus_15225#0 CGCCGACGCCACAGCAGCGGGCGGCGCCGCGGCGGGAGCAGTCGCCGCTGAACCCGAGCT 241 consensus_15225#3 CGCCGACGCCACAGCAGCGGGCGGCGCCGCG----------------------------- 191 * * ** * * * ** consensus_15225#2 C------------------CTCCTCGTGAGACGAC---------------GAGATTGACG 248 consensus_15225#4 C------------------CTCCTCGTGAGACGAC---------------GAGATTGACG 163 consensus_15225#1 CAC---------------TCCCTCCGTGAGACGACC--------------GAGATTGACG 383 consensus_15225#0 CGCAGTCGATCCGGTCGGCCTCCTCCGGCACCGAGCTCGCAGGTTCCGCGGCGACGGAGG 301 consensus_15225#3 -----------------------------------------------------ACGGAGG 198 * ** * consensus_15225#2 TCTTCTT-CCAAGAGCC-CTTAA-TTATGTAAATTTTTGTAGAAGCA-GACCAACAATT- 303 consensus_15225#4 TCTTCTT-CCAAGAGCC-CTTAA-TTATGTAAATTTTTGTAGAAGCA-GACCCACAATT- 218 consensus_15225#1 TCTTCTTGCCAAGAGCCACTTAA-TTATGTAAATTTTTGTAGAAGCAAGACCTACAATTG 442 consensus_15225#0 CCTCCCGGGCGCACATCGCCAACCTTGACCGGGTTCTCGGGAAGCCACCGCAGGTGCCGA 361 consensus_15225#3 CCTCCCGGGCGCACATCGCCAACCTTGACCGGGTTCTCGGGAAGCCACCGNAGTCTCGTA 258 ** * * * * * ** ** * * * ** consensus_15225#2 CTTTCGTTAGTC--AGGGGTGTCAGCGGGAAAAAAGATTTTCCCTTGTCA-TTTGACGTA 360 consensus_15225#4 CTTTCGTTTGTC--AGGGTTTTCAACCGGGGAAAAAAGTAT------------------- 257 consensus_15225#1 CTTTCGTTAGTCCAGGGGGTGTCAGCGGGAAAAAAGATTTTCCCTTGTCACTTTGACGTA 502 consensus_15225#0 GGCCGGCGAGCCACGCGGCGGCGAGCAAGCAGGAGCGGCAGCAGCAGGACGGGGAGCTGG 421 consensus_15225#3 GGCCGNCGAGCCACGCGGCGGCGAGCAAGCAGGAGCGGCAC------------------- 299 * * ** * * * * consensus_15225#2 TGTATGTACA-GTACATAA-AAACTATTATACTTGCAAAAA------------------- 399 consensus_15225#4 ------------------------------------------------------------ consensus_15225#1 TGTATGTACAAGTACATACCNAACTATTATACTTGCAAAAAA------------------ 544 consensus_15225#0 AGCCGCTCAACGTCAGGCACGGCCTGCTCAACGCGCTCAACCTGTCCTTCTTCGTGCCCA 481 consensus_15225#3 ------------------------------------------------------------ consensus_15225#2 ------------------------------------------------------------ consensus_15225#4 ------------------------------------------------------------ consensus_15225#1 ------------------------------------------------------------ consensus_15225#0 TGCCCGGGATGCGGGCCCGCACCGCCGCCGACGAGCACATGTCGCCTCGCAGCCTCATGC 541 consensus_15225#3 ------------------------------------------------------------ consensus_15225#2 ------------------------------------------------------------ consensus_15225#4 ------------------------------------------------------------ consensus_15225#1 ------------------------------------------------------------ consensus_15225#0 ACATGCAGCAGCTCCTCTCCGCCGACTCCCCGCGCGCCTCGCCGAGGAGCACCATCGCGC 601 consensus_15225#3 ------------------------------------------------------------ consensus_15225#2 ------------------------------------------------------------ consensus_15225#4 ------------------------------------------------------------ consensus_15225#1 ------------------------------------------------------------ consensus_15225#0 CGCGCTGGCGCAGCCTCCACGGGGAAGACGGCTGGGCCGGCCTCCTCGACCCGCTCGACT 661 consensus_15225#3 ------------------------------------------------------------ consensus_15225#2 ------------------------------------------------------------ consensus_15225#4 ------------------------------------------------------------ consensus_15225#1 ------------------------------------------------------------ consensus_15225#0 CCGACCTCCGCCGCGAGCTCCTCCGCTACGGCGACTTCGTCCAGGCGGCGTACCAGGCGT 721 consensus_15225#3 ------------------------------------------------------------ consensus_15225#2 ------------------------------------------------------------ consensus_15225#4 ------------------------------------------------------------ consensus_15225#1 ------------------------------------------------------------ consensus_15225#0 TCCACTCGCTGCCCACCGCGTCGGCGAGGCACCGCGGGCTCATGCTCCCCGACCGCTCCT 781 consensus_15225#3 ------------------------------------------------------------ consensus_15225#2 ------------------------------------------------------------ consensus_15225#4 ------------------------------------------------------------ consensus_15225#1 ------------------------------------------------------------ consensus_15225#0 ACCGCCCGACGCGGAGCCTCTTCGCCACCTCGGCGCTGTCCATGCCGCCGTGGGCGAAGC 841 consensus_15225#3 ------------------------------------------------------------ consensus_15225#2 ------------------------------------------------------------ consensus_15225#4 ------------------------------------------------------------ consensus_15225#1 ------------------------------------------------------------ consensus_15225#0 GCCCCAACACCCCCGAGTGGCTCACGCAGCAGTCCAACTGGATCGGATACGTCGCCGTGT 901 consensus_15225#3 ------------------------------------------------------------ consensus_15225#2 ------------------------------------------------------------ consensus_15225#4 ------------------------------------------------------------ consensus_15225#1 ------------------------------------------------------------ consensus_15225#0 GCGAGTCCGAGCGGGAGGTCGCCCGCATGGGCCGCCGCGACATCGCCATCGTGCTGCGCG 961 consensus_15225#3 ------------------------------------------------------------ consensus_15225#2 ------------------------------------------------------------ consensus_15225#4 ------------------------------------------------------------ consensus_15225#1 ------------------------------------------------------------ consensus_15225#0 GGACGGCCACCTGCCTCGAGTGGGCGGAGAACCTGCGCGCCTCGCTCGTGCCTCTCGACG 1021 consensus_15225#3 ------------------------------------------------------------ consensus_15225#2 ------------------------------------------------------------ consensus_15225#4 ------------------------------------------------------------ consensus_15225#1 ------------------------------------------------------------ consensus_15225#0 GCGAGAGCGGCGAAGGCGGCGGGCAGGAGGAGCCCAAGGTGGCACGGGGATTCCGGAGCC 1081 consensus_15225#3 ------------------------------------------------------------ consensus_15225#2 ------------------------------------------------------------ consensus_15225#4 ------------------------------------------------------------ consensus_15225#1 ------------------------------------------------------------ consensus_15225#0 TGTACAAGACGGCAGGGGAGAAGGTGAAGAGCCTCTCGGAGGAGGTCATGGGCGAGGTGC 1141 consensus_15225#3 ------------------------------------------------------------ consensus_15225#2 ------------------------------------------------------------ consensus_15225#4 ------------------------------------------------------------ consensus_15225#1 ------------------------------------------------------------ consensus_15225#0 GGCGGCTCATGGAGAAGTACAAGGGCGAGGAGCTCAGCATCACGGTCGTCGGCCACAGCC 1201 consensus_15225#3 ------------------------------------------------------------ consensus_15225#2 ------------------------------------------------------------ consensus_15225#4 ------------------------------------------------------------ consensus_15225#1 ------------------------------------------------------------ consensus_15225#0 TCGGCGGCGCCCTGGCGCTCCTCGTGGCCGACGAGATCGCCACCACCGTCCCCGACGCGC 1261 consensus_15225#3 ------------------------------------------------------------ consensus_15225#2 ------------------------------------------------------------ consensus_15225#4 ------------------------------------------------------------ consensus_15225#1 ------------------------------------------------------------ consensus_15225#0 CGCCCGTCGCCGTGGTCTCCTTCGGCGGGCCCAAGGTCGGGAACGCCGCGTTCGTGGACA 1321 consensus_15225#3 ------------------------------------------------------------ consensus_15225#2 ------------------------------------------------------------ consensus_15225#4 ------------------------------------------------------------ consensus_15225#1 ------------------------------------------------------------ consensus_15225#0 AGCTCCAGAAGAACGGCAGGGTGAACGTCCTGCGCATCGTCAACGCCGGCGACATGGTCA 1381 consensus_15225#3 ------------------------------------------------------------ consensus_15225#2 ------------------------------------------------------------ consensus_15225#4 ------------------------------------------------------------ consensus_15225#1 ------------------------------------------------------------ consensus_15225#0 CCAAGGTGCCCGGCGTGGCGCCGCGCCTGCCGCTCACCAAGGAGCAGTACCAGCACGTCG 1441 consensus_15225#3 ------------------------------------------------------------ consensus_15225#2 ------------------------------------------------------------ consensus_15225#4 ------------------------------------------------------------ consensus_15225#1 ------------------------------------------------------------ consensus_15225#0 GCGCGGAGCTGCGCATCGACAGCAAGAACTCGCCGTGCCTCCGCCCCGACGCCGGCCCGG 1501 consensus_15225#3 ------------------------------------------------------------ consensus_15225#2 ------------------------------------------------------------ consensus_15225#4 ------------------------------------------------------------ consensus_15225#1 ------------------------------------------------------------ consensus_15225#0 CGTGCCGCCACGACCTGGAGGCGTACCTGCACCTCATCGACGGGTTCACGGGGACGGGCC 1561 consensus_15225#3 ------------------------------------------------------------ consensus_15225#2 ----------------------------------------------------- consensus_15225#4 ----------------------------------------------------- consensus_15225#1 ----------------------------------------------------- consensus_15225#0 GCCCGTTCCGGCACACGGGGGCGAAGGTGATCCCGTTTTTAAGTTTAANAGGG 1614 consensus_15225#3 ----------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||