These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15239#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1085 fasta sequence [GCTTGTGTGACCGGCTCCTACGGCCCTACCATTGAGGGTTCGCCTCCGATCTTCTGCCGGAACCCATAGCCATGAGGACTTCCCTTGTTCGTTTCTTCCTTACTATCCTCGCCAACACGTTTCTCCATTCCCCCTACCAGCACTCCTCACCTCCTGAATCATCCCAATGTTCGACGCCGCTTGGTAGCGAGAGTGGAGGAAAGAGGAGGCGGGGGAGGAGGGGGAAGCAGAAGGGCTTGGGTGAGGTGGTGTCTGTTCATGAGAAAAAGGAGGCAAAAACATCACCTTTCCCCCTCCTGCTGTTGTGCCGTGCAACGAGACGGCGGATCACAGAGGTGTATGATGAGATGTACCAAATTGTTCGTGCTAAAAGGAATGATACTGGCAGGGTTCACGAGTTCATTAACTGTTTGGTAGATGCAAGAAATGAACTGCTGCACAAGTCGGAGATGGTTCAAAGAAGCTGCGGAATAAAGAAGGCCTTACTATCCAACCCTTGTAGTCGCAGGGCTAACAGTTATGACCGCCTCTGCGAACAGCTGCATAAATTGGAAGCCGAGCACAAAAGGCTAAAGAAGGATGCGGATATCTACAACTATATTCAAGAGCAGCTTCAGATGTCAGAGTCATACAAACTGGTGATTGAGCTTAGTGCGTTGGTGGAGAANGCCAAACGTGANGATGCCCTTGCCACCGAGGCCGCAGAGATGACACTCGAGGAGCTGCTGGCTCAGGANAANANCGATGCCGNCTTCTGGCAGCGTCACAGGAAGCTGACCTCAATCNTACCC-AGTAGAGNTTGATAACTGACCGGGCGATTT-ANCATCGTC-ATAGTAGCCCGAACCCGT-ACCAGAANTTGTTCCTGGGGGAGCTTTTAATGTTGCTAGTTGCAACCGTGGTGTAATGCGCTTGCCAAGCTCTTGGGCGCCTGAAAGTCCAGAGTCCTTGACCATAAAACCTGAGAGATTCAGGTGGTTGGCTGACGACCAGCAAATGCTCTCATATATCCTATCTGGTACTTCGGCCATGAAGATTTCTTGCCTGTGGATGCCCTGATGGAATTGAGCTTTCTTCAATGCAAAAAA] [+] EMBL CA764143 [GCTTGTGTGACCGGCTCCTACGGCCCTACCATTGAGGGTTCGCCTCCGATCTTCTGCCGGAACCCATAGCCATGAGGACTTCCCTTGTTCGTTTCTTCCTTACTATCCTCGCCAACACGTTTCTCCATTCCCCCTACCAGCACTCCTCACCTCCTGAATCATCCCAATGTTCGACGCCGCTTGGTAGCGAGAGTGGAGGAAAGAGGAGGCGGGGGAGGAGGGGGAAGCAGAAGGGCTTGGGTGAGGTGGTGTCTGTTCATGAGAAAAAGGAGGCAAAAACATCACCTTTCCCCCTCCTGCTGTTGTGCCGTGCAACGAGACGGCGGATCACAGAGGTGTATGATGAGATGTACCAAATTGTTCGTGCTAAAAGGAATGATACTGGCAGGGTTCACGAGTTCATTAACTGTTTGGTAGATGCAAGAAATGAACTGCTGCACAAGTCGGAGATGGTTCAAAGAAGCTGCGGAATAAAGAAGGCCTTACTATCCAACCCTTGTAGTCGCAGGGCTAACAGTTATGACCGCCTCTGCGAACAGCTGCATAAATTGGAAGCCGAGCACAAAAGGCTAAAGAAGGATGCGGATATCTACAACTATATTCAAGAGCAGCTTCAGATGTCAGAGTCATACAAACTGGTGATTGAGCTTAGTGCGTTGGTGGAGAANGCCAAACGTGANGATGCCCTTGCCACCGAGGCCGCAGAGATGACACTCGAGGAGCTGCTGGCTCAGGANAANANCGATGCCGNCTTCTGGCAGCGTCACAGGAAGCTGACCTCAATCNTACCC AGTAGAGNTTGATAACTGACCGGGCGATTT ANCATCGTC ATAGTAGCCCGAACCCGT ACCAGAANTTGTTCCTGGGGGA ] [-] EMBL CF316779 [ ACAGTTATGACCGCCTCTGCGAACAGGTGCATAAATTGGAAGCCGAGCACAAAAGGCTAAAGAAGGATGCGGATATCTACAACTATATTCAAGAGCAGCTTCAGATGTCAGAGTCATACAAACTGTTGATTGAGCTTAGTGCGTTGGTGGAGAAGGCCGAACGTGAGGATGCCCTTGCCACCGAGGCCGCAGAGATGACATTCGAGGAGCTGCTGGCTCAGGAGAAGAGCGACGCCGCCTTCTGGCAGCGTCACAGGAAGCTGACCTCAATCTTACCCAAGTAGAGTTTGATAACTGACCGCGCGATTTCACCATCGTCAATAGTAGCCCGAACCCGTAACCAGAATTTGTTCCTGGTGGAGCTTTTAATGTTGCTAGTTGCAACCGTGGTGTAATGCGCTTGCCAAGCTCTTGGGCGCCTGAAAGTCCAGAGTCCTTGACCATAAAACCTGAGAGATTCAGGTGGTTGGCTGACGACCAGCAAATGCTCTCATATATCCTATCTGGTACTTCGGCCATGAAGATTTCTTGCCTGTGGATGCCCTGATGGAATTGAGCTTTCTTCAATGCAAAAAA] consensusID : consensus_15239#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 15 consensus length = 1036 fasta sequence [CATGGACTAAGGAGTAGAAAGAGGGTTCGCCTCCGATCTTCTGCCGGAACCCATAGCCATGAGGACTTCCCTTGTTCGTTTCTTCCTTACTATCCTCGCCAACACGTTTCTCCATTCCCCCTACCAGCACTCCTCACCTCCTGAATCATCCCAATGTTCGACGCCGCTTGGTAGCGAGAGTGGAGGAAAGAGGAGGCGGGGGAGGAGGGGGAAGCAGAAGGGCTTGGGTGA-GGTGGTGTCTGTTCACGAGAAAAAGGAGGCAAAAACATCACCTTTCCCCCTCCTGCTGTTGTGCCGTGCAACGAGACGGCGGATCACAGAGGTGTATGATGAGATGTACCAAATTGTTCGTGCTAAAAGGAATGATACTGGCAAGGTTCACGAGTTCATTAACTGTTTGGTAGATGCAAGAAATGAACTGCTGCACAAGTCGGAGATGGTTCAAAGAAGCTGCAGAATAAAGAAGGCCTTACTATCCAACCCTTGTAGTCGCAGGGCTAACAGTTATGACCGCCTC-TGCGAACA-GGTGC-ATAAATTGGAA-GCCGAGCACAAAAGGCTAAAGAA-GGATGCGGATATC-T-AC-AACTATATTCAAGAGCAGCTTCAGATGTCAGAGTCAT-AC-AA-ACTGTTGATTGAGCTTAGTGCGTTGGTGGAGAAGGCC-GAACGTGAGGATGCCCTTGCCACCGAGGCCG-CAGAGATGACATTCGAGGAG-CTGCTGGCT-CA-GGAGAAGAGCGATGCCGCCTTCTGGCAGCGTCA-CA-GGAAGCTGACCTCAATCTTACCCA-AGTAGAGTTTGATAACTGA-CCGCGCGATTTCA-CCA-TCGTCA-ATAGTAGCCCGAACCCGTAACCA-GAA-TTTGTTCCTGGTGGAGCTTTTAATGTT-G-CTAGTTGCAA-CC--GTGGTGTAATGCGCTTGCCAAGCTCTTGGGCGCCTGAAAGTCCAGAGTCCTTGACCATAAAACCTGAGAGATTCAGGTGGTTGGCTGACGACCAGCAAATGCTCTCATATATCCTATCTGGTACTTCGGCCAAAAAAAAAAAAAAAAAAA] [+] EMBL CF313868 [CATGGACTAAGGAGTAGAAAGAGGGTTCGCCTCCGATCTTCTGCCGGAACCCATAGCCATGAGGACTTCCCTTGTTCGTTTCTTCCTTACTATCCTCGCCAACACGTTTCTCCATTCCCCCTACCAGCACTCCTCACCTCCTGAATCATCCCAATGTTCGACGCCGCTTGGTAGCGAGAGTGGAGGAAAGAGGAGGCGGGGGAGGAGGGGGAAGCAGAAGGGCTTGGGTGA GGTGGTGTCTGTTCACGAGAAAAAGGAGGCAAAAACATCACCTTTCCCCCTCCTGCTGTTGTGCCGTGCAACGAGACGGCGGATCACAGAGGTGTATGATGAGATGTACCAAATTGTTCGTGCTAAAAGGAATGATACTGGCAAGGTTCACGAGTTCATTAACTGTTTGGTAGATGCAAGAAATGAACTGCTGCACAAGTCGGAGATGGTTCAAAGAAGCTGCAGAATAAAGAAGGCCTTACTATCCAACCCTTGTAGTCGCAGGGCTAACAGTTATGACCGCCTC TGCGAACA GGTGC ATAAATTGGAA GCCGAGCACAAAAGGCTAAAGAA GGATGCGGATATC T AC AACTATATTCAAGAGCAGCTTCAGATGTCAGAGTCAT AC AA ACT ] [+] EMBL CF337436 [ GGGTTCACCTCCGATCTTCTGCCGGAACCCATAGCCATGAGGACTTCCCTTGTTCGTTTCTTCCTTACTATCCTCGCCAACACGTTTCTCCATTCCCCCTACCAGCACTCCTCACCTCCTGAATCATCCCAATGTTCGACGCCGCTTGGTAGCGAGAGTGGAGGAAAGAGGAGGCGGGGGAGGAGGGAGAAGCAGAAGGGCTTGGGTGAGGGTGGTGTCTGTTCACGAGAAAAAGGAGGCAAAAACATCACCTTTCCCCCTCCTGCTGTTGTGCCGTGCAACGAGACGGCGGATCACAGAGGTGTATGATGAGATGTACCAAATTGTTCGTGCTAAAAGGAATGATACTGGCAAGGTTCACGAGTTCATTAACTGTTTGGTAGATGCAAGAAATGAACTGCTGCACAAGTCGGAGATGGTTCAAAGAAGCTGCAGAATAAAGAAGGCCTTACTATCCAACCCTTGTAGTCGCAGGGCTAACAGTTATGACCGCCTC TGCGAACA GGTGC ATAAATTGGAA GCCGAGCACAAAAGGCTAAAGAA GGATGCGGATATC T AC AACTATATTCAAGAGCAGCTTCAGATGTCAGAGTCAT AC AA ACT ] [+] EMBL AK102992 [ CCTCCGATCTTCTGCCGGAACCCATAGCCATGAGGACTTCCCTTGTTCGTTTCTTCCTTACTATCCTCGCCAACACGTTTCTCCATTCCCCCTACCAGCACTCCTCACCTCCTGAATCATCCCAATGTTCGACGCCGCTTGGTAGCGAGAGTGGAGGAAAGAGGAGGCGGGGGAGGAGGGGGAAGCAGAAGGGCTTGGGTGA GGTGGTGTCTGTTCACGAGAAGAAGGAGGCAAAAACATCACCTTTCCCCCTCCTGCTGTTGTGCCGTGCAACGAGACGGCGGATCACAGAGGTGTATGATGAGATGTACCAAATTGTTCGTGCTAAAAGGAATGATACTGGCAAGGTTCACGAGTTCATTAACTGTTTGGTAGATGCAAGAAATGAACTGCTGCACAAGTCGGAGATGGTTCAAAGAAGCTGCAGAATAAAGAAGGCCTTACTATCCAACCCTTGTAGTCGCAGGGCTAACAGTTATGACCGCCTC TGCGAACA GGTGC ATAAATTGGAA GCCGAGCACAAAAGGCTAAAGAA GGATGCGGATATC T AC AACTATATTCAAGAGCAGCTTCAGATGTCAGAGTCAT AC AA ACTGTTGATTGAGCTTAGTGCGTTGGTGGAGAAGGCC GAACGTGAGGATGCCCTTGCCACCGAGGCCG CAGAGATGACATTCGAGGAG CTGCTGGCT CA GGAGAAGAGCGACGCCGCCTTCTGGCAGCGTCA CA GGAAGCTGACCTCAATCTTACCCA AGTAGAGTTTGATAACTGA CCGCGCGATTTCA CCA TCGTCA ATAGTAGCCCGAACCCGTAACCA GAA TTTGTTCCTGGTGGAGCTTTTAATGTT G CTAGTTGCAA CC GTGGTGTAATGCGCTTGCCAAGCTCTTGGGCGCCTGAAAGTCCAGAGTCCTTGACCATAAAACCTGAGAGATTCAGGTGGTTGGCTGACGACCAGCAAATGCTCTCATATATCCTATCTGG ] [+] EMBL CF316778 [ CTTCCTTACTATCCTCGCCAACACGTTTCTCCATTCCCCCTACCAGCACTCCTCACCTCCTGAATCATCCCAATGTTCGACGCCGCTTGGTAGCGAGAGTGGAGGAAAGAGGAGGCGGGGGAGGAGGGGGAAGCAGAAGGGCTTGGGTGA GGTGGTGTCTGTTCACGAGAAAAAGGAGGCAAAAACATCACCTTTCCCCCTCCTGCTGTTGTGCCGTGCAACGAGACGGCGGATCACAGAGGTGTATGATGAGATGTACCAAATTGTTCGTGCTAAAAGGAATGATACTGGCAAGGTTCACGAGTTCATTAACTGTTTGGTAGATGCAAGAAATGAACTGCTGCACAAGTCGGAGATGGTTCAAAGAAGCTGCAGAATAAAGAAGGCCTTACTATCCAACCCTTGTAGTCGCAGGGCTAACAGTTATGACCGCCTC TGCGAACA GGTGC ATAAATTGGAA GCCGAGCACAAAAGGCTAAAGAA GGATGCGGATATC T AC AACTATATTCAAGAGCAGCTTCAGATGTCAGAGTCAT AC AA ACTGTTGATTGAGCTTA ] [-] EMBL CF320135 [ GTTCAAAGAAGCTGCAGAATAAAGAAGGCCTTACTATCCAACCCTTGTAGTCGCAGGGCTAACAGTTATGACCGCCTC TGCGAACA GGTGC ATAAATTGGAA GCCGAGCACAAAAGGCTAAAGAA GGATGCGGATATC T AC AACTATATTCAAGAGCAGCTTCAGATGTCAGAGTCAT AC AA ACTGTTGATTGAGCTTAGTGCGTTGGTGGAGAAGGCC GAACGTGAGGATGCCCTTGCCACCGAGGCCG CAGAGATGACATTCGAGGAG CTGCTGGCT CA GGAGAAGAGCGACGCCGCCTTCTGGCAGCGTCA CA GGAAGCTGACCTCAATCTTACCCA AGTAGAGTTTGATAACTGA CCGCGCGATTTCA CCA TCGTCA ATAGTAGCCCGAACCCGTAACCA GAA TTTGTTCCTGGTGGAGCTTTTAATGTT G CTAGTTGCAA CC GTGGTGTAATGCGCTTGCCAAGCTCTTGGGCGCCTGAAAGTCCAGAGTCCTTGACCATAAAACCTGAGAGATTCAGGTGGTTGGCTGACGACCAGCAAATGCTCTCATATATCCTATCTGGTA AAAAAAAAAAAA ] [+] EMBL BI800243 [ aGCCTTACTATCCAACCCTTGTAGTCGCAGGGCTAACAGTTATGACCGCCTC TGCGAACA GGTGC ATAAATTGGAA GCCGAGCAC AAAGGCTAAAGAA GGATGCGGATATC T AC AACTATATTCAAGAGCAGCTTCAGATGTCAGAGTCAT AC A ACTGTTGATTGAGCTTAGTGCGTTGGTGGAGAAGGCC AACGTGAGGATGCCCTTGCCACCGAGGCCG CAGAGATGACATTCGAGGAG CTGCTGGCT CA GGAGAAGAGCGATGCCGCCTTCTGGCAGCGTCA CA GGAAGCTGACCTCAATCTTACCCA AGTAGAGTTTGATAACTGA CCGCGCGATTTCA CCA TCGTCA ATAGTAGCCCGAACCCGTAACCA GAA TTTGTTCCTGGTGGAGCTTTTAATGTT G CTAGTTGCAA CC ATGGTGTAATGCGCTTCCCAAGCTCTTGGGCGCCTGAAAGTCCAGAGTCCTTGACCATAAAACCTGAGAGATTCAGGTGGTTGGCTGACGACCAGCAAAaa ] [-] EMBL CF317977 [ GCTAACAGTTATGACCGCCTC TGCGAACA GGTGC ATAAATTGGAA GCCGAGCACAAAAGGCTAAAGAA GGATGCGGATATC T AC AACTATATTCAAGAGCAGCTTCAGATGTCAGAGTCAT AC AA ACTGTTGATTGAGCTTAGTGCGTTGGTGGAGAAGGCC GAACGTGAGGATGCCCTTGCCACCGAGGCCG CAGAGATGACATTCGAGGAG CTGCTGGCT CA GGAGAAGAGCGACGCCGCCTTTTGGCAGCGTCA CA GGAAGCTGACCTCAATTTTACCCA AGTAGAGTTTGATAACTGA CCGCGCGATTTCA CCA TCGTCA ATAGTAGCCCGAACCCGTAACCA GAA TTTGTTCCTGGTGGAGCTTTTAATGTT G CTAGTTGCAA CC GTGGTGTAATGCGCTTGCCAAGCTCTTGGGCGCCTGAAAGTCCAGAGTCCTTGACCATAAAACCTGAGAGATTCAGGTGGTTGGCTGACGACCAGCAAATGCTCTCATATATCCTATCTGGTACTTCGGCCAAAAAAAAA ] [+] EMBL BI799803 [ TATGACCGCCTC TGCGAACA GGTGC ATAAATTGGAA GCCGAGCACAAAAGGCTAAAGAA GGATGCGGATATC T ACAAACTATATTCAAGAGCAGCTTCAGATGTCAGAGTCAT AC AA ACTGTTGATTGAGCTTAGTGCGTTGGTGGAGAAGGCC AAACGTGAGGATGCCCTTGCCACCGAGGCCG CAGAGATGACATTCGAGGAG CTGCTGGCT CA GGAGAAGAGCGATGCCGCCTTCTGGCAGCGTCA CA GGAAGCTGACCTCAATCTTACCCA AGTAGAGTTTGATAACTGA CCGCGCGATTTCA CCA TCGTCA ATAGTAGCCCGAACCCGTAACCA GAA TTTGTTCCTGGTGGAGCTTTTAATGTT G CTAGTTGCAA CC ATGGTGTAATGCGCTTGCCAAGCTCTTGGGCGCCTGAAAGTCCAGAGTCCTTGACCATAAAACCTGAGAGATTCAGGTGGTTGGCTGACGACCAGCAAATGCTCTCATATATCCTATCTGGTACTTCGGCCAAAA ] [+] EMBL BI797124 [ acCCGCCTCGTGCGAACAGGGTGCAATGAATTGGAACGCCGAGCACAAAAGGCTAAAGAAGGGATGCGGATATC T AC AACTATATTCAAGA CAGCTTCAGATCTCAGAGTCAT ACAAA ACTGTTGATTGAGCTTAGTGCGTTGGTGGAGAAGGCC AAACGTGAGGATGCCCTT CCACCGA GCC CAGAGATGACATTCGAGGAG CTGCTGGCT CA GGAGAAGAGCGATCCAACCTTCTGGCAGCGTCA CA GGAAGCTGACCTC ATCTTACCCA AGTAGAGTTTGATAACTGA CCGCGCGATTTCA CCA TCGTCA ATAGTAGCCCGAACCCGTAACCA GAACTTTGTTCCTGGTGGAGCTTTTAATGTTCGCCTAGTTCCAA CC ATGGTGTAATGCGCTTGCCAAGCTCTTGGGCGCCTGAAAGTCCAGAGTCCTTGACCATAAAACCTGAGAGATTCA GT GTTGCCTGACGACCAGCAAATGCTCTCATATATCCTATCTGGTACTTCGcc ] [+] EMBL BI798739 [ GCGAACA GGTGC ATAAATTGGAA CCGAGCACAAAAGGCTAAAGAA GGAT CGGATATC T AC AACTATATTCAAGACCAGCTTCAGATGTCAGAGTCAT AC CA ACTGTTGATTGAGCTTAGTGC TTGGTGGAGAAGCCCACAACGTGAGGATGCCCTTGCCACCGAGGCCGCCAGAGATGACATTCGAGGAG CTGCTGGCT CA GGAGAAGAGCGATGCCCCCTTCTGGCAGCGTCA CA GGAAGCTGACCTCAATCTTACCCA AGTAGAGTTTGATAACTGA CCGCGCGATTTCA CCA TCGTCA ATAGTAGCCCGAACCCGTAACCA GAA TTTGTTCCTGGTGGAGCTTTTAATGTT G CTAGTTGCAA CCCACTGGTGTAATGCGCTTGCCAAGCTCTTGGGCGCCTGAAAGTCCAGAGTCCTTGACCATAAAACCTGAGAGATTCAGGTGGTTGGCTGACGACCAGCAAATGCTCTCATATATCCTATCTGGTACTTCGGCCCAAAAAAAAAA ] [+] EMBL CF197315 [ TAAATTGGAA GCCGAGCACAAAAGGCTAAAGAA GGATGCGGATATC T AC AACTATATTCAAGAGCAGCTTCAGATGTCAGAGTCAT AC AA ACTGTTGATTGAGCTTAGTGCGTTGGTGGAGAAGGCC AAACGTGAGGATGCCCTTGCCACCGAGGCCG CAGAGATGACATTCGAGGAG CTGCTGGCT CA GGAGAAGAGCGATGCCGCCTTCTGGCAGCGTCA CA GGAAGCTGACCTCAATCTTACCCA AGTAGAGTTTGATAACTGA CCGCGCGATTTCA CCA TCGTCA ATAGTAGCCCGAACCCGTAACCA GAA TTTGTTCCTGGTGGAGNNNNNAATGTT G CTAGTTGCAA CC ATGGnnnn ] [+] EMBL BI798332 [ TAAAGAA GGAT CGGATATC T AC AACTATATTCAAGACAAGCTTCAGATGTCAGAGTCAT AC A ACTGTTGATTGAGCTTAGTGCGTTGGTGGAGAAGGCC AAACGTGAGGATGCCCTTGCCACCGAGGCCG CAGAGATGACATTCGAGGAG CTGCTGGCT CA GGAGAAGAGCGAT CCGCCTTCTGGCAGCGTCA CA GGAAGCTGACCTCAATCTTACCCA AGTAGAGTTTGATAACTGA CCGCGCGATTTCA CCA TCGTCA ATAGTAGCCCGAACCCGTAACCA GAA TTTGTTCCTGGTGGAGCTTTTAATGTT G CTAGTTGCAACCC ATGGTGTAATGCGCTTGCCAAGCTCTTGGGCGCCTGAAAGTCCAGAGTCCTTGACCATAAAACCTGAGAGATTCAGGTGGTTGGCTGACGACCA C AATGCTCTCATATATCCTATCTGGTACTTC GCCAAAA ] [+] EMBL BI797560 [ AGAA GGATCCGGATATCGTCAC CACTATATTCAAGACCAGCTTCAGATGTCAGAGTCATCAC CA ACTGTTGATTGAGCTTAGTGCCTTGGTGGAGAAGGCC CAACGTGAGGATGCCCTTGCCCCCGAGGCCC CAGAGATGACATTCGAGGAGCCTGCTGGCTCCACGGAGAAGAGCGATGCCCCCTTCTGGCAGCGTCACCACGGAAGCTGACCTCAATCTTACCCACAGTAGAGTTTGATAACTGACCCGCGCGATTTCACCCACTCGTCACATAGTAGCCCGAACCCGTAACCACGAA TTTGTTCCTGGTGGAGCTTTTAATGTT G CTAGTTGCCA CCA CTGGTGTAATGCGCTTGCC AGCTCTTGGGCGCCTGAAAGTCCCGAGTCCTTGACCATAAAACCTGAGAGATTCAGGTGGTTGGCTGACGACCAGCCAATGCTCTCATATATCCTATCTGGTACTTCGGCCCTGAAAAAAAAAA ] [+] EMBL CB667437 [ AT AC AACCCTTTTGATTGAGCTTAGTGCGTTGGTGGAGAAGGCC GAACGTGAGGATGCCCTTGCCACCGAGGCCG CAGAGATGACATTCGAGGAG CTGCTGGCT CA GGAGAAGAGCGACGCCGCCTTCTGGCAGCGTCA CA GGAAGCTGACCTCAATCTTACCCA AGTAGAGTTTGATAACTGA CCGCGCGATTTCA CCA TCGTCA ATAGTAGCCCGAACCCGTAACCA GAA TTTGTTCCTGGTGGAGCTTTTAATGTT G CTAGTTGCAA CC GTGGTGTAATGCGCTTGCCAAGCTCTTGGGCGCCTGAAAGTCCAGAGTCCTTGACCATAAAACCTGAGAGATTCAGGTGGTTGGCTGACGACCAGCAAATGCTCTCATATATCCTATCTGGTAC ] [+] EMBL AU032813 [ AGTTTGATAACTGA CCGCGCGATTTCA CCA TCGTCA ATAGTAGCCCGAACCCGTAACCA GAA TTTGTTCCTGGTGGAGCTTTTAATGTT G CTAGTTNCAA CC GTGGTGTAATGCGCTTGCCAAGCTCTTGGGCGCCTGAAAGTCCAGAGTCCTTGNCCATAAAACCTGAGAGATTCAGGTGGTTGGCTGACGACCAGCAAATGCTCTCATATATCCTATCTGGTACTTCGGCCAAAAAAAAAAAAAAAAAAA] consensusID : consensus_15239#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 984 fasta sequence [CATGGACTGAGGAGTAGAAACGGAACCCATAGCCATGAGGGCTTCCCCTGTTCGTTTCCTCCTTACTATCCTCGCCAACACGTTTCTCCATTCCCCCTACCAGCACTCCTCACCTCCTGAATCATCCCAATGTTCGACGCCGCTTGGTAGCGAGAGTGGAGGAAAGAGGAGGCGGGGGAGGAGGGGGAAGCAGAAGGGCTTGGGTGAGGTGGTGTCTGTTCACGAGAAAAAGGAGGCAAAAACATCACCTTTCCCCCTCCTGCTGTTGTGCCGTGCAACGAGACGGCGGATCACAGAGGTGTATGATGAGATGTACCAAATTGTTCGTGCTAAAAGGAATGATACTGGCAAGGTTCACGAGTTCATTAACTGTTTGGTAGATGCAAGAAATGAACTGCTGCACAAGTCGGAGATGGTTCAAAGAAGCTGCAGAATAAAGAAGGCCTTACTATCCAACCCTTGTAGTCGCAGGGCTAACAGTTATGACCGCCTCTGCGAACAGGTGCATAAATTGGAAGCCGAGCACAAAAGGCTAAAGAAGGATGCGGATATCTACAACTATATTCAAGAGCAGCTTCAGATGTCAGAGTCATACAAACTGTTGATTGAGCTTAGTGCGTTGGTGGAGAAGGCCGAACGTGAGGATGCCCTTGCCACCGAGGCCGCAGAGATGACATTCGAGGAGCTGCTGGCTCAGGAGAAGAGCGACGCCGCCTTTTGGCAGCGTCACAGGAAGCTGACCTCAATTTTACCCAAGTAGAGTTTGATAACTGACCGCGCGATTTCACCATCGTCAATAGTAGCCCGAACCCGTAACCAGAATTTGTTCCTGGTGGAGCTTTTAATGTTGCTAGTTGCAACCGTGGTGTAATGCGCTTGCCAAGCTTTTGGGCGCCTGAAAGTCCAGAGTCCTTGACCATAAAACCTGAGAGATTCAGGTGGTTGGCTGACGACCAGCAAATGCTTTCATAAAAAAAAAAAAAA] [+] EMBL CF320136 [CATGGACTGAGGAGTAGAAACGGAACCCATAGCCATGAGGGCTTCCCCTGTTCGTTTCCTCCTTACTATCCTCGCCAACACGTTTCTCCATTCCCCCTACCAGCACTCCTCACCTCCTGAATCATCCCAATGTTCGACGCCGCTTGGTAGCGAGAGTGGAGGAAAGAGGAGGCGGGGGAGGAGGGGGAAGCAGAAGGGCTTGGGTGAGGTGGTGTCTGTTCACGAGAAAAAGGAGGCAAAAACATCACCTTTCCCCCTCCTGCTGTTGTGCCGTGCAACGAGACGGCGGATCACAGAGGTGTATGATGAGATGTACCAAATTGTTCGTGCTAAAAGGAATGATACTGGCAAGGTTCACGAGTTCATTAACTGTTTGGTAGATGCAAGAAATGAACTGCTGCACAAGTCGGAGATGGTTCAAAGAAGCTGCAGAATAAAGAAGGCCTTACTATCCAACCCTTGTAGTCGCAGGGCTAACAGTTATGACCGCCTCTGCGAACAGGTGCATAAATTGGAAGCCGAGCACAAAAGGCTAAAGAAGGATGCGGATATCTACAACTATATTCAAGAGCAGCTTCAGATGTCAGAGTCATACAAACTGTTGATTGAGCTTAG ] [-] EMBL CF313867 [ AGTTATGACCGCCTCTGCGAACAGGTGCATAAATTGGAAGCCGAGCACAAAAGGCTAAAGAAGGATGCGGATATCTACAACTATATTCAAGAGCAGCTTCAGATGTCAGAGTCATACAAACTGTTGATTGAGCTTAGTGCGTTGGTGGAGAAGGCCGAACGTGAGGATGCCCTTGCCACCGAGGCCGCAGAGATGACATTCGAGGAGCTGCTGGCTCAGGAGAAGAGCGACGCCGCCTTTTGGCAGCGTCACAGGAAGCTGACCTCAATTTTACCCAAGTAGAGTTTGATAACTGACCGCGCGATTTCACCATCGTCAATAGTAGCCCGAACCCGTAACCAGAATTTGTTCCTGGTGGAGCTTTTAATGTTGCTAGTTGCAACCGTGGTGTAATGCGCTTGCCAAGCTTTTGGGCGCCTGAAAGTCCAGAGTCCTTGACCATAAAACCTGAGAGATTCAGGTGGTTGGCTGACGACCAGCAAATGCTTTCATAAAAAAAAAAAAAA] consensusID : consensus_15239#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 443 fasta sequence [GGATTCGGCCGATCTATATTCTAGNACATCTTCNGANNTCAGAGTCNNNCAACCTGTTGANTGANCTTAGTGCGTTGGTGGAGAAGGCCGAACGTGAGGATGCCCTTGCCACCGAGGNCGCAGAGATGACATTCGANGAGCTGCTGGCTCAGGAGAAGAGCGACGCCGCCTTCTGGCAGCGTCACAGGAAGCTGACCTCAATCTTACCCAAGTNGAGTTTGATAACTGACCGCGCGATTTCACCATCGTCAATAGTAGCCCGAACCCGTAACCAGAATTTGTTCCTGGTGGAGCTTTTAATGTTGCTAGTTGCAACCGTGGTGTNATGCGCTTGCCAAGCTCTTGGGCGCCTGAAAGTCCAGANTCCTTGACCATAAAACCTGAGANATTCANGTGGTTGGCTGACGACCAGCAAATGCTCTCATATATCCTATCTGGTACTT] [+] EMBL AA752987 [GGATTCGGCCGATCTATATTCTAGNACATCTTCNGANNTCAGAGTCNNNCAACCTGTTGANTGANCTTAGTGCGTTGGTGGAGAAGGCCGAACGTGAGGATGCCCTTGCCACCGAGGNCGCAGAGATGACATTCGANGAGCTGCTGGCTCAGGAGAAGAGCGACGCCGCCTTCTGGCAGCGTCACAGGAAGCTGACCTCAATCTTACCCAAGTNGAGTTTGATAACTGACCGCGCGATTTCACCATCGTCAATAGTAGCCCGAACCCGTAACCAGAATTTGTTCCTGGTGGAGCTTTTAATGTTGCTAGTTGCAACCGTGGTGTNATGCGCTTGCCAAGCTCTTGGGCGCCTGAAAGTCCAGANTCCTTGACCATAAAACCTGAGANATTCANGTGGTTGGCTGACGACCAGCAAATGCTCTCATATATCCTATCTGGTACTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15239#0 GCTTGTGTGACCGGCTCCTACGGCCCTACCATTGAGGGTTCGCCTCCGATCTTCTGCCGG 60 consensus_15239#2 -------------------------------------CATGGACTGAGGAGTAGAAACGG 23 consensus_15239#1 -----------CATGGACTAAGGAGTAGAAA--GAGGGTTCGCCTCCGATCTTCTGCCGG 47 consensus_15239#3 ------------------------------------------------------------ consensus_15239#0 AACCCATAGCCATGAGGACTTCCCTTGTTCGTTTCTTCCTTACTATCCTCGCCAACACGT 120 consensus_15239#2 AACCCATAGCCATGAGGGCTTCCCCTGTTCGTTTCCTCCTTACTATCCTCGCCAACACGT 83 consensus_15239#1 AACCCATAGCCATGAGGACTTCCCTTGTTCGTTTCTTCCTTACTATCCTCGCCAACACGT 107 consensus_15239#3 ------------------------------------------------------------ consensus_15239#0 TTCTCCATTCCCCCTACCAGCACTCCTCACCTCCTGAATCATCCCAATGTTCGACGCCGC 180 consensus_15239#2 TTCTCCATTCCCCCTACCAGCACTCCTCACCTCCTGAATCATCCCAATGTTCGACGCCGC 143 consensus_15239#1 TTCTCCATTCCCCCTACCAGCACTCCTCACCTCCTGAATCATCCCAATGTTCGACGCCGC 167 consensus_15239#3 ------------------------------------------------------------ consensus_15239#0 TTGGTAGCGAGAGTGGAGGAAAGAGGAGGCGGGGGAGGAGGGGGAAGCAGAAGGGCTTGG 240 consensus_15239#2 TTGGTAGCGAGAGTGGAGGAAAGAGGAGGCGGGGGAGGAGGGGGAAGCAGAAGGGCTTGG 203 consensus_15239#1 TTGGTAGCGAGAGTGGAGGAAAGAGGAGGCGGGGGAGGAGGGGGAAGCAGAAGGGCTTGG 227 consensus_15239#3 ------------------------------------------------------------ consensus_15239#0 GTGAGGTGGTGTCTGTTCATGAGAAAAAGGAGGCAAAAACATCACCTTTCCCCCTCCTGC 300 consensus_15239#2 GTGAGGTGGTGTCTGTTCACGAGAAAAAGGAGGCAAAAACATCACCTTTCCCCCTCCTGC 263 consensus_15239#1 GTGAGGTGGTGTCTGTTCACGAGAAAAAGGAGGCAAAAACATCACCTTTCCCCCTCCTGC 287 consensus_15239#3 ------------------------------------------------------------ consensus_15239#0 TGTTGTGCCGTGCAACGAGACGGCGGATCACAGAGGTGTATGATGAGATGTACCAAATTG 360 consensus_15239#2 TGTTGTGCCGTGCAACGAGACGGCGGATCACAGAGGTGTATGATGAGATGTACCAAATTG 323 consensus_15239#1 TGTTGTGCCGTGCAACGAGACGGCGGATCACAGAGGTGTATGATGAGATGTACCAAATTG 347 consensus_15239#3 ------------------------------------------------------------ consensus_15239#0 TTCGTGCTAAAAGGAATGATACTGGCAGGGTTCACGAGTTCATTAACTGTTTGGTAGATG 420 consensus_15239#2 TTCGTGCTAAAAGGAATGATACTGGCAAGGTTCACGAGTTCATTAACTGTTTGGTAGATG 383 consensus_15239#1 TTCGTGCTAAAAGGAATGATACTGGCAAGGTTCACGAGTTCATTAACTGTTTGGTAGATG 407 consensus_15239#3 ------------------------------------------------------------ consensus_15239#0 CAAGAAATGAACTGCTGCACAAGTCGGAGATGGTTCAAAGAAGCTGCGGAATAAAGAAGG 480 consensus_15239#2 CAAGAAATGAACTGCTGCACAAGTCGGAGATGGTTCAAAGAAGCTGCAGAATAAAGAAGG 443 consensus_15239#1 CAAGAAATGAACTGCTGCACAAGTCGGAGATGGTTCAAAGAAGCTGCAGAATAAAGAAGG 467 consensus_15239#3 ------------------------------------------------------------ consensus_15239#0 CCTTACTATCCAACCCTTGTAGTCGCAGGGCTAACAGTTATGACCGCCTCTGCGAACAGC 540 consensus_15239#2 CCTTACTATCCAACCCTTGTAGTCGCAGGGCTAACAGTTATGACCGCCTCTGCGAACAGG 503 consensus_15239#1 CCTTACTATCCAACCCTTGTAGTCGCAGGGCTAACAGTTATGACCGCCTCTGCGAACAGG 527 consensus_15239#3 ------------------------------------------------------------ consensus_15239#0 TGCATAAATTGGAAGCCGAGCACAAAAGGCTAAAGAAGGATGCGGATATCTACAACTATA 600 consensus_15239#2 TGCATAAATTGGAAGCCGAGCACAAAAGGCTAAAGAAGGATGCGGATATCTACAACTATA 563 consensus_15239#1 TGCATAAATTGGAAGCCGAGCACAAAAGGCTAAAGAAGGATGCGGATATCTACAACTATA 587 consensus_15239#3 -------------------------------------GGATTCGGCCG-----ATCTATA 18 **** *** * ***** consensus_15239#0 TTCAAGAGCAGCTTCAGATGTCAGAGTCATACAAACTGGTGATTGAGCTTAGTGCGTTGG 660 consensus_15239#2 TTCAAGAGCAGCTTCAGATGTCAGAGTCATACAAACTGTTGATTGAGCTTAGTGCGTTGG 623 consensus_15239#1 TTCAAGAGCAGCTTCAGATGTCAGAGTCATACAAACTGTTGATTGAGCTTAGTGCGTTGG 647 consensus_15239#3 TTCTAGNACATCTTCNGANNTCAGAGTCNNNCAACCTGTTGANTGANCTTAGTGCGTTGG 78 *** ** ** **** ** ******** *** *** *** *** ************* consensus_15239#0 TGGAGAANGCCAAACGTGANGATGCCCTTGCCACCGAGGCCGCAGAGATGACACTCGAGG 720 consensus_15239#2 TGGAGAAGGCCGAACGTGAGGATGCCCTTGCCACCGAGGCCGCAGAGATGACATTCGAGG 683 consensus_15239#1 TGGAGAAGGCCGAACGTGAGGATGCCCTTGCCACCGAGGCCGCAGAGATGACATTCGAGG 707 consensus_15239#3 TGGAGAAGGCCGAACGTGAGGATGCCCTTGCCACCGAGGNCGCAGAGATGACATTCGANG 138 ******* *** ******* ******************* ************* **** * consensus_15239#0 AGCTGCTGGCTCAGGANAANANCGATGCCGNCTTCTGGCAGCGTCACAGGAAGCTGACCT 780 consensus_15239#2 AGCTGCTGGCTCAGGAGAAGAGCGACGCCGCCTTTTGGCAGCGTCACAGGAAGCTGACCT 743 consensus_15239#1 AGCTGCTGGCTCAGGAGAAGAGCGATGCCGCCTTCTGGCAGCGTCACAGGAAGCTGACCT 767 consensus_15239#3 AGCTGCTGGCTCAGGAGAAGAGCGACGCCGCCTTCTGGCAGCGTCACAGGAAGCTGACCT 198 **************** ** * *** **** *** ************************* consensus_15239#0 CAATCNTACCCA-GTAGAGNTTGATAACTGACCGGGCGATTT-ANCATCGTCA-TAGTAG 837 consensus_15239#2 CAATTTTACCCAAGTAGAGTTTGATAACTGACCGCGCGATTTCACCATCGTCAATAGTAG 803 consensus_15239#1 CAATCTTACCCAAGTAGAGTTTGATAACTGACCGCGCGATTTCACCATCGTCAATAGTAG 827 consensus_15239#3 CAATCTTACCCAAGTNGAGTTTGATAACTGACCGCGCGATTTCACCATCGTCAATAGTAG 258 **** ****** ** *** ************** ******* * ******** ****** consensus_15239#0 CCCGAACCCGTA-CCAGAANTTGTTCCTGGGGGAGCTTTTAATGTTGCTAGTTGCAACCG 896 consensus_15239#2 CCCGAACCCGTAACCAGAATTTGTTCCTGGTGGAGCTTTTAATGTTGCTAGTTGCAACCG 863 consensus_15239#1 CCCGAACCCGTAACCAGAATTTGTTCCTGGTGGAGCTTTTAATGTTGCTAGTTGCAACCG 887 consensus_15239#3 CCCGAACCCGTAACCAGAATTTGTTCCTGGTGGAGCTTTTAATGTTGCTAGTTGCAACCG 318 ************ ****** ********** ***************************** consensus_15239#0 TGGTGTAATGCGCTTGCCAAGCTCTTGGGCGCCTGAAAGTCCAGAGTCCTTGACCATAAA 956 consensus_15239#2 TGGTGTAATGCGCTTGCCAAGCTTTTGGGCGCCTGAAAGTCCAGAGTCCTTGACCATAAA 923 consensus_15239#1 TGGTGTAATGCGCTTGCCAAGCTCTTGGGCGCCTGAAAGTCCAGAGTCCTTGACCATAAA 947 consensus_15239#3 TGGTGTNATGCGCTTGCCAAGCTCTTGGGCGCCTGAAAGTCCAGANTCCTTGACCATAAA 378 ****** **************** ********************* ************** consensus_15239#0 ACCTGAGAGATTCAGGTGGTTGGCTGACGACCAGCAAATGCTCTCATATATCCTATCTGG 1016 consensus_15239#2 ACCTGAGAGATTCAGGTGGTTGGCTGACGACCAGCAAATGCTTTCATAAAAAAAAAAAAA 983 consensus_15239#1 ACCTGAGAGATTCAGGTGGTTGGCTGACGACCAGCAAATGCTCTCATATATCCTATCTGG 1007 consensus_15239#3 ACCTGAGANATTCANGTGGTTGGCTGACGACCAGCAAATGCTCTCATATATCCTATCTGG 438 ******** ***** *************************** ***** * * consensus_15239#0 TACTTCGGCCATGAAGATTTCTTGCCTGTGGATGCCCTGATGGAATTGAGCTTTCTTCAA 1076 consensus_15239#2 A----------------------------------------------------------- 984 consensus_15239#1 TACTTCGGCCAAAAAAAAAAAAAAAAAAA------------------------------- 1036 consensus_15239#3 TACTT------------------------------------------------------- 443 consensus_15239#0 TGCAAAAAA 1085 consensus_15239#2 --------- consensus_15239#1 --------- consensus_15239#3 --------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||