These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15245#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 14 consensus length = 1078 fasta sequence [ACTCACACGCGGAGACAAAAACACCTTCACAATTCGCGAAAGCTCAGCTGCTTCTGCTTCTTCTTCTTCTTTCGGATTCGAGAAGAGGATGTCCATCTCGCTGCGCCTCGCGGTCCCGACGGCGGCGCCGCCCGTGCTGCCGCCGCTGCGGCAGTCTGCGGTGCGGGCGGCGGGCTCCCCCGCCGCCGCCGCTCTGCGGACGGGCGCGCTCAGGGGATGCGCCTCGCTGCCGCTGAAGCCGCAGCCGCTGCTGGGGGCGGGACAGGCGGCGAGCGGTCGCCGGGGTGGCGCCGCCGTGTGCCACTCGTCGGCGCACCTGAGCGCGCGGACGATGCAATGGGTCTCCGCCGGGGCCACCGCAGTGCTATTGCTTGCTAAAGGCACAGCCATACACAAATCTTTCCTTGTGCCACTGTTTGCTTTGCTAGCACCTTGCAGTGTAATCTCATGGATCAAGAGTGACTATGGTCATT-GGACTGC-TTTTCTT-GCTCTTTTGGTGCGTTTGTTCTTCTCCATTCCAGGTGAGCTGGAGCTTCCATTGTCAACTATGCTGCTCGTGAGTGTTGCTCCTTACCA-GTTGATGAATCTGAGGGGAACTC-AAGGTGGTGCAGCACTGTCTTTGGCATTGGCTGGGTATCTC-GCTTTTCAGCACTTCA-CCAGGGTTGGGGGTTTAGGGAAAGCATTTGAT-CAGGGATC-AATAA-TTGCAAC-CTTGGCC-ATCATC-T-GC-ATCAC-AGTTATCC-CCTTGATGA-TGTTGTTCTGAGTCAGATTAAGCTGGCAAGCCGTTGTTC-ATTGTGGGCA-TTGCAGGAG-CTAGTAGGGAGTAC-AGAAAAAATAATAGCTTTGTAATGCAACACCCTATCAGACTTTGTGGCCTTGATAAAAGTAATAATTTATG-AGATGGCTACAGAAATGTTTACTGAAAAAAATGTCTTCAGGGATTTGCTCATTTTCTCATTTCTTAATCTCTTTCGCAATCTTGCAAACAATTGATGCTTGTATGGCCTATATACAATTATAC-AACTTA-AAAGGCATGCCGAACCTTACAAAAGAAAAGAAAAAGGGCATGCCGATGGCCAAAAAAAAA] [+] EMBL AK065748 [ACTCACACGCGGAGACAAAAACACCTTCACAATTCGCGAAAGCTCAGCTGCTTCTGCTTCTTCTTCTTCTTTCGGATTCGAGAAGAGGATGTCCATCTCGCTGCGCCTCGCGGTCCCGACGGCGGCGCCGCCCGTGCTGCCGCCGCTGCGGCAGTCTGCGGTGCGGGCGGCGGGCTCCCCCGCCGCCGCCGCTCTGCGGACGGGCGCGCTCAGGGGATGCGCCTCGCTGCCGCTGAAGCCGCAGCCGCTGCTGGGGGCGGGACAGGCGGCGAGCGGTCGCCGGGGTGGCGCCGCCGTGTGCCACTCGTCGGCGCACCTGAGCGCGCGGACGATGCAATGGGTCTCCGCCGGGGCCACCGCAGTGCTATTGCTTGCTAAAGGCACAGCCATACACAAATCTTTCCTTGTGCCACTGTTTGCTCTGCTAGCACCTTGCAGTGTAATCTCATGGATCAAGAGTGACTATGGTCAGT GGACTGC TTTTCTT GCTCTTTTGGTGCGTTTGTTCTTCTCCATTCCAGGTGAGCTGGAGCTTCCATTGTCAACTATGCTGCTCGTGAGTGTTGCTCCTTACCA GTTGATGAATCTGAGGGGAACTC AAGGTGGTGCAGCACTGTCTTTGGCATTGGCTGGGTACCTC GCTTTTCAGCACTTCA CCAGGGTTGGGGGTTTAGGGAAAGCATTTGAT CAGGGATC AATAA TTGCAAC CTTGGCC ATCATC T GC ATCAC AGTTATCC CCTTGATGA TGTTGTTCTGAGTCAGATTAAGCTGGCAAGCCGTTGTTC ATTGTGGGCA TTGCAGGAG CTAGTAGGGAGTAC AG AAAAATAATAGCTTTGTAATGCAACACCCTGTCAGACTTTGTGGCCTTGATAAAAGTAATAATTTATG AGATGGCTACAGAA ] [+] EMBL AY181210 [ AACACCTTCACAATTCGCGAAAGCTCAGCTGCTTCTGCTTCTTCTTCTTCTTTCGGATTCGAGAAGAGGATGTCCATCTCGCTGCGCCTCGCGGTCCCGACGGCGGCGCCGCCCGTGCTGCCGCCGCTGCGGCAGTCTGCGGTGCGGGCGGCGGGCTCCCCCGCCGCCGCCGCTCTGCGGACGGGCGCGCTCAGGGGATGCGCCTCGCTGCCGCTGAAGCCGCAGCCGCTGCTGGGGGCGGGACAGGCGGCGAGCGGTCGCCGGGGTGGCGCCGCCGTGTGCCACTCGTCGGCGCACCTGAGCGCGCGGACGATGCAATGGGTCTCCGCCGGGGCCACCGCAGTGCTATTGCTTGCTAAAGGCACAGCCATACACAAATCTTTCCTTGTGCCACTGTTTGCTCTGCTAGCACCTTCCAGTGTAATCTCATGGATCAAGAGTGACTATGGTCAGT GGACTGC TTTTCTT GCTCTTTTGGTGCGTTTGTTCTTCTGCATTCCAGGTGAGCTGGAGCTTCCATTGTCAACTATGCTGCTCGTGAGTGTTGCTCCTTACCA GTTGATGAATCTGAGGGGAACTC AAGGTGGTGCAGCACTGTCTTTGGCATTGGCTGGGTACCTC GCTTTTCAGCACTTCA CCAGGGTTGGGGGTTTAGGGAAAGCATTTGAT CAGGGATC AATAA TTGCAAC CTTGGCC ATCATC T GC ATCAC AGTTATCC CCTTGATGA TGTTGTTCTGAGTCAGATTAAGCTGGCAAGCCGTTGTTC ATTGTGGGCA TTGCAGGAG CTAGTAGGGAGTAC AG AAAAATAATAGCTTTGTAATGCAACACCCTGTCAGACTTTGTGGCCTTGATAAAAGTAATAATTTATG AGATGGCTACAGAAATGTTTACTGAAAAAA ] [+] EMBL BI798166 [ CGCCCGGACGATCCAAT GGTCTCC CCGGGCCCACC CAGTGCTATTGCTTG TAAAGGCACACCCATACAC AATCTTTCCTTGT CCCCTGTTTGCTTTGCTAGCACCTTCCAGTGTAATCTCATGGATCAAGAGTGACTATGGTCATT GGACTGC TTTTCTT GCTCTTTTGGTGCGTTTGTTCTTCTCCATTCCAGGTGAGCTGGAGCTTCCATTGTCAACTATGCTGCTCGTGAGTGTTGCTCCTTACCA GTTGATGAATCTGAGGGGAACTC AAGGTGGT CAGCACTGTCTTTGGCATTGGCTGGGTATCTC GCTTTTCAGCACTTCACCCAGGGTTGGGGGTTTAGGGAAAGCATTTGAT CAGGGATC AATAA TTGCAAC CTTGGCC ATCATC T GC ATCAC AGTTATCC CCTTGATGA TGTTGTTCTGAGTCAGATTAAGCTGGCAA CCGTTGTTC ATTGT GGCA TT CAGGAG CTAGTAGGGAGTAC AGAAAAAATAATAGCTTTGTAATGC ACACCCTATCAGACTTTGT GCCTTGATAAAAGTAATAATCCATG AGATGGCTACAGAAATGTTTACTGAAAAA ] [+] EMBL BI797128 [ ATTGCTTGCTAAAGGCACAGCCATACAC AATCTTTCCTTGT CCACTGTTTGCTTTGCTAGCACCTTCCAGTGTAATCTCATGGATCAAGAGTGACTATGGTCATT GGACTGC TTTTCTT GCTCTTTTGGTGCCTTTGTTCTTCTCCATTCCAGGTGAGCTGGAGCTTCCATTGTCAACTATGCTGCTCGTGAGTGTTGCTCCTTACCA GTTGATGAATCTGAGGGGAACTCGAAGGTGGT CAGCACTGTCTTTGGCATTGGCTGGGTATCTC GCTTTTCAGCACTTCA CCAGGGTTGGGGCTTTAGGGAAAGCATTTGAT CAGGGATC ATAA TTGCAAC CTT GCC ATCATC T GC ATCAC AGTTATCC CCTTGATGA TGTTGTTCTGAGTCAGATTAAGCT GCAA CCGTTGTTC ATTGTGGCCA TTCCAGGAG CTAGTAGGGAGTAC AGAAAAAATAATAGCTTTGTAATCCAACACCCTACCAGACTTTGT GCCTTGATAAAAGTAATAATTTATGCAGATGGC CCAGAAATGTTTACTGAAAAA ] [+] EMBL BI798922 [ GCTTTGCTAGCACCTTGCAGTGTAATCTCATGGATCAAGAGTGACTATGGTCATTGGGACTGC TTTTCTTGGCTCTTTTGGTGC TTTGTTCTTCTCCATTCCAGGTGAGCTGGAGCTTCCATTGTCAACTATGCTGCTCGTGAGTGTTGCTCCTTACCA GTTGATGAATCTGAGGGGAACTC AAGGTGGTGCAGCACTGTCTTTGGCATTGGCTGGGTATCTC GCTTTTCAGCACTTCA CCA GGTT GGGGTTTAGGGAAAGCATTTGAT CAGGGATC ATAA TTGCAAC CTTGGCC ATCATC T GC ATCAC AGTTATCC CCTTGATGA TGTTGTTCTGAGTCAGATTAAGCTGGCAAGCCGTTGTTC ATTGTGGGCA TTGCAGGAG CTAGTAGGGAGTAC AGAAAAAATAATAGCTTTGTAATGC ACACCCTATCAGACTTTGTGGCCTTGATAAAAGTAATAATTTATG AGATGGCTACAGAAATGTTTACTGAAAAAAAaaa ] [+] EMBL BI797637 [ AGCACCTTGCAGTGTAATCTCATGGATCAAGAGTGACTATGGTCATT GGACTGC TTTTCTT GCTCTTTTGGTGCGTTTGTTCTTCTCCATTCCAGGTGAGCTGGAGCTTCCATTGTCAACTATGCTGCTCGTGAGTGTTGCTCCTTACCA GTTGATGAATCTGAGGGGAACTC AAGGTGGTGCAGCACTGTCTTTGGCATTGGCTGGGTATCTC GCTTTTCAGCACTTCA CCAGGGTTGGGGGTTTAGGGAAAGCATTTGAT CAGGGATC AATAA TTGCAAC CTTGGCC ATCATC T GC ATCAC AGTTATCC CCTTGATGA TGTTGTTCTGAGTCAGATTAAGCTGGCAAGCCGTTGTTC ATTGTGGGCA TTGCAGGAG CTAGTAGGGAGTAC AGAAAAAATAATAGCTTTGTAATGCAACACCCTATCAGACTTTGTGGCCTTGATAAAAGTAATAATTTATG AGATGGCTACAGAAATGTTTACTGAAAAAA ] [+] EMBL BI794870 [ ttCAGTGTAATCTCATGGATCAAGAGTGACTATGGTCATT GGACTGC TTTTCTT GCTCTTTTGGTGC TTTGTTCTTCTCCATTCCAGGTGAGCTGGAGCTTCCATTGTCAACTATGCTGCTCGTGAGTGTTGCTCCTTACCA GTTGATGAATCTGAGGGGAACTC AAGGTGGTGCAGCACTGTCTTTGGCATTGGCTGGGTATCTC GCTTTTCAGCACTTCA CCAGGGTTGGGGGTTTAGGGAAAGCATTTGAT CAGGGATC CATAA TTGCAAC CTTGGCC ATCATC T GC ATCAC AGTTATCC CCTTGATGA TGTTGTTCTGAGTCAGATTAAGCTGGCAAGCCGTTGTTC ATTGTGGGCA TTGCAGGAGCCTAGTAGGGAGTAC AGAAAAAATAATAGCTTTGTAATGC ACACCCTATCAGACTTTGTGGCCTTGATAAAAGTAATAATTTATG AGATGGCTACAGAAATGTTTACTGAAAAA ] [+] EMBL BI797550 [ TCTCATGGATCAAGAGTGACTATGGTCATT GGACTGC TTTTCTT GCTCTTTTGG GCGTTTGTTCTTC CCATTCCAGGTGAGCTGGAGCTTCCATTGTCAACTATGCTGCTCGTGAGTGTTGCTCCTTACCC GTTGATGAATCTGAGGGGAACTC AAGGTGGT CAGCCCTGTCTTTGCCCTT GCTGGGTATCTC GCTTTTCAGCCCTTCA CCA GGTTGGGGTTTTAGGGAAAGCATTTGAT CCGGGATC AATAA TTGCAAC CTT GCC ATCATC T GC ATCAC AGTTATCC CCTTGATGA TGTTGTTCTGAGTCAGATTAAGCT GCAA CCGTTGTTC ATTGT GGC TTCCAGGAG CTAGTAGGGAGTAC AGAAAAAATAATAGCTTTGTAATGCAACACCCTATCAGACTTTGT GCCTTGATAAAAGTAATAATTTATG AGATGGCTACAGAAATGTTTACTGATGCTGATGTCTTCAGGGAaa ] [+] EMBL BI798097 [ TCTCATGGATCAAGAGTGACTAT GTCATT GGACTGC TTTTC T GCTCTTTTGGTGCGTTTGTTCTTCTCCATTCCAGGTGAGCTGGAGCTTCCATTGTCAACTATGCTGCTCGTGAGTGTTGCTCCTTACCA GTTGATGAATCTGAGGGGAACTC AAGGTGGTGCAGCACTGTCTTTGGCATTGCCTGGGTATCTC GCTTTTCAGCACTTCA CCAGGGTTGGGGGTTTAGGGAAAGCATTTGATCCAGGGATC AATAA TTGCAAC CTTGGCC ATCATC T GC ATCAC AGTTATCC CCTTGATGACCCTTGTTCTGAGTCAGATTAAGCTGGCAAGCCGTTGTTC ATTGTGGCCA TTGCAGGAG CTAGTAGGGAGTAC AGAAAAAATAATAGCTTTGTAATGCAACACCCTATCAGACTTTGT GCCTTGATAAAAGTAATAATTCATG AGATGGCTACAGAAATGTTTACTGAAAAA ] [+] EMBL BI795478 [ CATGGATCAAGAGTGACTATGGTCATT GGACTGCTTTTTCTT GCTCTTTTGGTGCGTTTGTTCTTCTCCATTCCAGGTGAGCTGGAGCTTCCATTGTCAACTATGCTGCTCGTGAGTGTTGCTCCTTACCACGTTGATGAATCTGAGGGGAACTC AAGGTGGT CAGCACTGTCTTTGGCATT GCTGGGTATCTC GCTTTTCAGCACTTCA CCA GGTTGGGGGTTTAGGGAAAGCATTTGAT CAGGGATCAAATAA TTGCAAC CTTGGCC ATCATC T GC ATCAC AGTTATCC CCTTGATGA TGTTGTTCTGAGTCAGATTAAGCTGGCAAGCCGTTGTTC ATTGTGGGCA TTGCAGGAG CTAGTAGGGAGTAC AGAAAAAATAATAGCTTTGTAATGCAACACCCTATCAGACTTTGTGGCCTTGATAAAAGTAATAATTTATG AGATGGCTACAGAAATGTTTACTGAAAAA ] [+] EMBL BI804599 [ A GTTGATGAATCTGAGGGGAACTC AAGGTGGTGCAGCACTGTCTTTGGCATT GCTGGGTATCTC GCTTTTCAGCACTTCA CCAGGGTTGGGGGTTTAGGGAAAGCATTTGAT CAGGGATC AATAA TTGCAAC CTTGGCC ATCATC T GC ATCAC AGTTATCC CCTTGATGA TGTTGTTCTGAGTCAGATTAAGCTGGCAAGCCGTTGTTC ATTGTGGGCA TTGCAGGAG CTAGTAGGGAGTAC AGAAAAAATAATAGCTTTGTAATGCAACACCCTATCAGACTTTGTGGCCTTGATAAAAGTAATAATTTATG AGATGGCTACAGAAATGTTTACTGATGCTGATGTCTTCAGGGATTTGCTCATTTTCTCATTTCTTAATCTCTTTCGCAATCTTGCAAACAATTGATGCTTGTATGGCCTATATACAATTATAC AACTTA AAAGGCATGCCGAACCTTACAAAAGAAAAGAAAAAGGGCATGCCGATGGCCAAAAAAAAA] [+] EMBL BI800578 [ CTGAGGGGAACTC AA GT GT CA CACTGTCTTT GCATT GCTGGGTATCTCGGCTTTTCAGCACTTCA CCA GGTTGGGGGTTTAGGGAAAGCATTTGAT CAGGGATC AATAA TTGCAAC CTTGGCC ATCATC T GC ATCAC AGTTATCC CCTTGATGA TGTTGTTCTGAGTCAGATTAAGCTGGCAA CCGTTGTTC ATTGTGGGCA TTGCAGGAG CTAGTAGGGAGTAC AGAAAAAATAATAGCTTTGTAATGCAACACCCTATCAGACTTTGTGGCCTTGATAAAAGTAATAATTTATG AGATGGCTACAGAAATGTTTACTGATGCTGATGTCTTCAGGGATTTGCTCATTTTCTCATTTCTTAATCTCTTTCGCAATCTTGCAAAC ATTGATGCTTGTATGGCCTATATACAATTATACAAACTTATAAAGGCATGCCGAACCTTACAAAA ] [+] EMBL C99261 [ TTAGGGAAAGCATTTGAT CAGGGATC AATAA TTNCANC CTTGNCC ATCATC T GC ATCAC AGTTATCC CCTTGATGA TGTTGTTCTGAGTCAGATTAAGCTGGCAAGCCGTTGTTC ATTGTGGGCA TTNCAGGAG CTAGTAGGGAGTAC AG AAAAATAATAGCTTTGTAATGCAACACCCTGTCAGACTTTGTGGCCTTGATAAAAGTAATAATTTATG AGATGGCTACAGAAATGTTTNCTGNAAAAAAaaaaana ] [+] EMBL BI802291 [ ATC AATAAGTGGCAACATTTGGCCAATCATCGTGGCGATCACAAGTTATCCACCTTGATGA TGTTGTTCTGAGTCAGATTAAGCT GCAAGCCGTGGTTCAATTGT GGCATTTGCAGGAG CTAGTAGGGAGTACAAGAAAAAATAATAGCTTTGTAATGCAACACCCTATCAGACTTTGTGGCCTTGATAAAAGTAATAATTTATG AGATGGCTACAGAAATGTTTACTGATGCTGATGTCTTCAGGGATTTGCTCATTTTCTCATTTCTTAATCTCTTTCGCAATCTTGCAAACAATTGATGCTTGTATGGCCTATATACAATTATACAAACTTATAAAGGCATGCCGAACCTTACAAA ] consensusID : consensus_15245#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 625 fasta sequence [CCCCCCCCCGGTGCCCACTCTGTCGGCCGCCCCTGGAGCGCCGCGGCACGACTCCAAGTGGTTCTCCCCCCGGGCCCCACCCGCAGTGCTTATTGCTTGCTAAAGCACCAGCCTATACCATATCTTTCCGTGGGCCACCTGTTTGCTTTTGCTAGCACCTGCAGTGTAATCTCATGGATCACAGAGTGACTATGGTCATTGGACTGCTTTTCTTGCTCTTTTGGTGCGTTTGTTCTTCCCATTCCAGGTGAGCCTGGAGCTTCCATTGTCAACTATGCTGCTCGTGAGTGTTGCTCCTTACCAGTTGATGAATCTGAGGGGAACTCAAGGTGGTCCAGCACTGTCTTTGCCATTGCTGGGTATCTCGCTTTTCAGCACTTCACCAGGTTGGGGTTTTAGGGAAAGCATTTGATCAGGGATCAATAATGCCAACTTGCCATCATCTGCATCACGTTATCCCTGGATGATGTTGTTCTGAGTCAGATTAACTGCAACCTTGTTCTTGTGGCCTTCCAGGAGCTAGTAGGGAGTACGAAAAATAATAGCTTTGTAACCAACACCCTATCAGACTTGTGCTGATAAAAGTAATAATTTATGAGATGCTACAGAAATGTTTACTGAAAAA] [+] EMBL BI799190 [CCCCCCCCCGGTGCCCACTCTGTCGGCCGCCCCTGGAGCGCCGCGGCACGACTCCAAGTGGTTCTCCCCCCGGGCCCCACCCGCAGTGCTTATTGCTTGCTAAAGCACCAGCCTATACCATATCTTTCCGTGGGCCACCTGTTTGCTTTTGCTAGCACCTGCAGTGTAATCTCATGGATCACAGAGTGACTATGGTCATTGGACTGCTTTTCTTGCTCTTTTGGTGCGTTTGTTCTTCCCATTCCAGGTGAGCCTGGAGCTTCCATTGTCAACTATGCTGCTCGTGAGTGTTGCTCCTTACCAGTTGATGAATCTGAGGGGAACTCAAGGTGGTCCAGCACTGTCTTTGCCATTGCTGGGTATCTCGCTTTTCAGCACTTCACCAGGTTGGGGTTTTAGGGAAAGCATTTGATCAGGGATCAATAATGCCAACTTGCCATCATCTGCATCACGTTATCCCTGGATGATGTTGTTCTGAGTCAGATTAACTGCAACCTTGTTCTTGTGGCCTTCCAGGAGCTAGTAGGGAGTACGAAAAATAATAGCTTTGTAACCAACACCCTATCAGACTTGTGCTGATAAAAGTAATAATTTATGAGATGCTACAGAAATGTTTACTGAAAAA] consensusID : consensus_15245#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 597 fasta sequence [GCCCGNNTAATNNGGGANCNGAGGNGGAGAAGANGNTTCCCCGGNCCCNCGATNTTTGTNGNGAAGGANCAGCAAAACNATNNTTCCANGGGCCNAAGTGGANGNAACACNNGAAGNNTAATTTNAGGATNGAGNAGGANAGGTCNAATGGGGATTTTATAGTTNNGGGGGGNNNGTTNTTANNCATTNCAAGGGGAGANGGAGCTTCNAATTGTCAAATAAGGTGNTTGGGAGNGTTGTCCNTAACCCAGTTGATGAATNTGAGGGGAATTCAAGGNGGNGCAGCACTGTCTTNGGCATTGGNTGGGTATNTCGCTTTTCAGCACTTCACCAGGGTTGGGGGTTTAGGGAAAGCATTTGATCAGGGATCAATAATNGCAACCTTGGCCATCATATGCATCACAGTTATCCCCTTGATGATGTTGTTCTGAGTCAGATTAAGCTGGCAAGCCGTTGTTCATTGTGGGCATTGCAGGAGCTAGTAGGGAGTACAGAAAAAATAATAGCTTTGTAATGCAACACCCTATCAGACTTTGTGGCCTTGATAAAAGTAATAATTTATGAGATGGCTACAGAAATGTTTACTGAAAAAAAAAA] [-] EMBL AA753259 [GCCCGNNTAATNNGGGANCNGAGGNGGAGAAGANGNTTCCCCGGNCCCNCGATNTTTGTNGNGAAGGANCAGCAAAACNATNNTTCCANGGGCCNAAGTGGANGNAACACNNGAAGNNTAATTTNAGGATNGAGNAGGANAGGTCNAATGGGGATTTTATAGTTNNGGGGGGNNNGTTNTTANNCATTNCAAGGGGAGANGGAGCTTCNAATTGTCAAATAAGGTGNTTGGGAGNGTTGTCCNTAACCCAGTTGATGAATNTGAGGGGAATTCAAGGNGGNGCAGCACTGTCTTNGGCATTGGNTGGGTATNTCGCTTTTCAGCACTTCACCAGGGTTGGGGGTTTAGGGAAAGCATTTGATCAGGGATCAATAATNGCAACCTTGGCCATCATATGCATCACAGTTATCCCCTTGATGATGTTGTTCTGAGTCAGATTAAGCTGGCAAGCCGTTGTTCATTGTGGGCATTGCAGGAGCTAGTAGGGAGTACAGAAAAAATAATAGCTTTGTAATGCAACACCCTATCAGACTTTGTGGCCTTGATAAAAGTAATAATTTATGAGATGGCTACAGAAATGTTTACTGAAAAAAAAAA] consensusID : consensus_15245#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 400 fasta sequence [CCCGCCAAGGTAATCTCATGGATCAAGAGTGGACTATGGGTCATGTGGACTGCTTTTCTGCTCTTTTGGTGCATTTGTTCTTCACCATTCCAGGTGAGTCTGGAGCTTCCATGTGTCAACTATGCTGCTCGTGAGTGTTGCTCCTTACCAAGTGTGATGAATCTGAGGGGAACTCAAGGTGGTCCAGCACATGTCTTTGCATTGCTGGGTTATCTCGCTTTTCAGCACTTCACCAGGGTTGGGGTTTTAGGGAAAGCATTTGATCACGGGATCAAATAATTCGCAACCTGTGCCCATCATCTGCATGCACAAGTTACTCCCCTTAGATGATGTTGTTCTGAGTCAGATTGAAGCTCGGCAAGCCAGTTGTTCACTTGTGGCCATTCCAGGAGCTAGTAGG] [+] EMBL BI795800 [CCCGCCAAGGTAATCTCATGGATCAAGAGTGGACTATGGGTCATGTGGACTGCTTTTCTGCTCTTTTGGTGCATTTGTTCTTCACCATTCCAGGTGAGTCTGGAGCTTCCATGTGTCAACTATGCTGCTCGTGAGTGTTGCTCCTTACCAAGTGTGATGAATCTGAGGGGAACTCAAGGTGGTCCAGCACATGTCTTTGCATTGCTGGGTTATCTCGCTTTTCAGCACTTCACCAGGGTTGGGGTTTTAGGGAAAGCATTTGATCACGGGATCAAATAATTCGCAACCTGTGCCCATCATCTGCATGCACAAGTTACTCCCCTTAGATGATGTTGTTCTGAGTCAGATTGAAGCTCGGCAAGCCAGTTGTTCACTTGTGGCCATTCCAGGAGCTAGTAGG] consensusID : consensus_15245#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 225 fasta sequence [AACACCTTCACAATTCGCGAAANTCAGCTGCTTCTNCTTCTTCTTCTTCTTTCGGATTCGAGAAGAGGATGTCCATCTCGCTNCGCCTNGGGGTCCCGACGGCGGCGCCCCGTGCTGCCGCGCTGCNATNCNTGNCGGTNCGGGCNGCGGGCTCCCCCGCCNGCTNCNTTGCGAGCTGGNGCGCGCTCAGGGGATGCGCCTNGCTGCCGCTGAAGCCGCAGCCGC] [+] EMBL OSC521 [AACACCTTCACAATTCGCGAAANTCAGCTGCTTCTNCTTCTTCTTCTTCTTTCGGATTCGAGAAGAGGATGTCCATCTCGCTNCGCCTNGGGGTCCCGACGGCGGCGCCCCGTGCTGCCGCGCTGCNATNCNTGNCGGTNCGGGCNGCGGGCTCCCCCGCCNGCTNCNTTGCGAGCTGGNGCGCGCTCAGGGGATGCGCCTNGCTGCCGCTGAAGCCGCAGCCGC] consensusID : consensus_15245#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 205 fasta sequence [ACAATTCGCGAAAGTCAGCTGCTTCTGCTTCTTCTTCTTCTTTCGGATTCGAGAAGAGGANGTCCATCTCGCTGNGCCTCGCGGTCCCGACGGCGGCGCCCCCGTNCTGCCGCCGCTGCGANTNCATAGCGGTGCGGGCGGCGGGCTCCCCCGNCGNCCGNTNTNCGAACGGNNGAGCTCAGGGGATGCGCCTNGTTGCCGGCTG] [+] EMBL OSC18172 [ACAATTCGCGAAAGTCAGCTGCTTCTGCTTCTTCTTCTTCTTTCGGATTCGAGAAGAGGANGTCCATCTCGCTGNGCCTCGCGGTCCCGACGGCGGCGCCCCCGTNCTGCCGCCGCTGCGANTNCATAGCGGTGCGGGCGGCGGGCTCCCCCGNCGNCCGNTNTNCGAACGGNNGAGCTCAGGGGATGCGCCTNGTTGCCGGCTG] consensusID : consensus_15245#6 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 165 fasta sequence [AGCTGGCAAGCCGTTGGTTGCCTTGTGGGCCTTGCCGGAGCTAGTGAGGGAGTGACCAGAGAAAAATGAATGAGCTTTTGTAATGCACACCCTATCAGACTTTGTGGCCTTGATAAAAGTAATAATTTATGAGATGGCTACAGAAATGTTTACTGAAAAAAAAAA] [+] EMBL BI795429 [AGCTGGCAAGCCGTTGGTTGCCTTGTGGGCCTTGCCGGAGCTAGTGAGGGAGTGACCAGAGAAAAATGAATGAGCTTTTGTAATGCACACCCTATCAGACTTTGTGGCCTTGATAAAAGTAATAATTTATGAGATGGCTACAGAAATGTTTACTGAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15245#1 ------------------------------------------------------------ consensus_15245#3 ------------------------------------------------------------ consensus_15245#2 ------------------------------------------------------------ consensus_15245#6 ------------------------------------------------------------ consensus_15245#0 ACTCACACGCGGAGACAAAAACACCTTCACAATTCGCGAAAGCTCAGCTGCTTCTGCTTC 60 consensus_15245#4 ------------------------------------------------------------ consensus_15245#5 ------------------------------------------------------------ consensus_15245#1 ------------------------------------------------------------ consensus_15245#3 ------------------------------------------------------------ consensus_15245#2 ------------------------------------------------------------ consensus_15245#6 ------------------------------------------------------------ consensus_15245#0 TTCTTCTTCTTTCGGATTCGAGAAGAGGATGTCCATCTCGCTGCGCCTCGCGGTCCCGAC 120 consensus_15245#4 ------------------------------------------------------------ consensus_15245#5 ------------------------------------------------------------ consensus_15245#1 ------------------------------------------------------------ consensus_15245#3 ------------------------------------------------------------ consensus_15245#2 ------------------------------------------------------------ consensus_15245#6 ------------------------------------------------------------ consensus_15245#0 GGCGGCGCCGCCCGTGCTGCCGCCGCTGCGGCAGTCTGCGGTGCGGGCGGCGGGCTCCCC 180 consensus_15245#4 ------------------------------------------------------------ consensus_15245#5 ------------------------------------------------------------ consensus_15245#1 ------------------------------------------------------------ consensus_15245#3 ------------------------------------------------------------ consensus_15245#2 -------------GCCCGNNTAATNNGGGANCNGAGGNGGAGAAGANGNTTCCCCGGNCC 47 consensus_15245#6 ------------------------------------------------------------ consensus_15245#0 CGCCGCCGCCGCTCTGCGGACGGGCGCGCTCAGGGGATGCGCCTCGCTGCCGCTGAAGCC 240 consensus_15245#4 ------------------------------------------------------------ consensus_15245#5 ------------------------------------------------------------ consensus_15245#1 ----------------------------------CCCCCCCCCGGTGCCCACTCTGTCGG 26 consensus_15245#3 ------------------------------------------------------------ consensus_15245#2 CNCGATNTTTGTNGNGAAGGANCAGCAAAACNATNNTTCCANGGGCCNAAGTGGANGNAA 107 consensus_15245#6 ------------------------------------------------------------ consensus_15245#0 GCAGCCGCTGCTGGGGGCGGGACAGGCGGCGAGCGGTCGCCGGGGTGGCGCCGCCGTGTG 300 consensus_15245#4 ------------------------------------------------------------ consensus_15245#5 ------------------------------------------------------------ consensus_15245#1 CCGCCCCTGGAGCGCCGCGGCACGACTCCAAGTGGTTCTCCCCCCGGGCCCCACCCGCAG 86 consensus_15245#3 ------------------------------------------------------------ consensus_15245#2 CACNNGAAGNNTAATTTNAGGATNGAGNAGGANAGGTCNAATGGGGATTTTATAGTTNNG 167 consensus_15245#6 ------------------------------------------------------------ consensus_15245#0 CCACTCGTCGGCGCACCTGAGCGCGCGGACGATGCAATGGGTCTCCGCCGGGGCCACCGC 360 consensus_15245#4 ------------------------------------------------------------ consensus_15245#5 ------------------------------------------------------------ consensus_15245#1 TGCTTATTGCTTGCTAAAGCACCAGCCTATACCATATCTTTCCGTGGGCCACCTGTTTGC 146 consensus_15245#3 ------------------------------------------------------------ consensus_15245#2 GGGGGNNNGTTNTTANNCATTNCAAGGGGAGANGGAGCTTCNAATTGTCAAATAAGGTGN 227 consensus_15245#6 ------------------------------------------------------------ consensus_15245#0 AGTGCTATTGCTTGCTAAAGGCACAGCCATACACAAATCTTTCCTTGTGCCACTGTTTGC 420 consensus_15245#4 ------------------------------------------------------------ consensus_15245#5 ------------------------------------------------------------ consensus_15245#1 TTTTGCTAGCACCTGCAGTGTAATCTCATGGATCACAGAGTGACTATGG-TCAT-TGGAC 204 consensus_15245#3 ----------CCCGCCAAGGTAATCTCATGGATCAAGAGTGGACTATGGGTCATGTGGAC 50 consensus_15245#2 TTGGGAGNGTTGTCCNTAACCCAGTTGATGAATNTGAGGGGAATTCAAGGNGGNGCAGCA 287 consensus_15245#6 ------------------------------------------------------------ consensus_15245#0 TTTGCTAGCACCTTGCAGTGTAATCTCATGGATCAAGAGT-GACTATGG-TCAT-TGGAC 477 consensus_15245#4 ------------------------------------------------------------ consensus_15245#5 ------------------------------------------------------------ consensus_15245#1 TGCTTTTCTTGCTCTTTTGGTGCGTTTGTTCTTC-CCATTCCAGGTGAGCCTGGAGCTTC 263 consensus_15245#3 TGCTTTTCT-GCTCTTTTGGTGCATTTGTTCTTCACCATTCCAGGTGAGTCTGGAGCTTC 109 consensus_15245#2 CTGTCTTNGGCATTGGNTGGGTATNTCGCTTTTCAGCACTTCACCAGGGTTGGGGGTTTA 347 consensus_15245#6 ------------------------------------------------------------ consensus_15245#0 TGCTTTTCTTGCTCTTTTGGTGCGTTTGTTCTTCTCCATTCCAGGTGAG-CTGGAGCTTC 536 consensus_15245#4 ------------------------------------------------------------ consensus_15245#5 ------------------------------------------------------------ consensus_15245#1 CAT-TGTCAACTATGCTGCTCGTGAGTGTTGCTCCTTACCAGTTG--ATGAATCTGAGGG 320 consensus_15245#3 CATGTGTCAACTATGCTGCTCGTGAGTGTTGCTCCTTACCAAGTGTGATGAATCTGAGGG 169 consensus_15245#2 GGGAAAGCATTTGATCAGGGATCAATAATNGCAACCTTGGCCATCATATGCATCACAGTT 407 consensus_15245#6 ------------------------------------------------------------ consensus_15245#0 CAT-TGTCAACTATGCTGCTCGTGAGTGTTGCTCCTTACCAGTTG--ATGAATCTGAGGG 593 consensus_15245#4 ------------------------------------------------------------ consensus_15245#5 ------------------------------------------------------------ consensus_15245#1 GAACTCAAGGTGGTCCAGCAC-TGTCTTTGCCATTGCTGGGT-ATCTCGCTTTTCAGCAC 378 consensus_15245#3 GAACTCAAGGTGGTCCAGCACATGTCTTTGC-ATTGCTGGGTTATCTCGCTTTTCAGCAC 228 consensus_15245#2 ATCCCCTTGATGATGTTGTTC-TGAGTCAGATTAAGCTGG--CAAGCCGTTGTTCA--TT 462 consensus_15245#6 ----------------------------------AGCTGG--CAAGCCGTTGGTTGCCTT 24 consensus_15245#0 GAACTCAAGGTGGTGCAGCACTGTCTTTGGCATTGGCTGGG-TATCTCGCTTTTCAGCAC 652 consensus_15245#4 -------------------AACACCTTCACAATTCGCGAAANTCAGCTGCT-TCTNCTTC 40 consensus_15245#5 ----------------------------ACAATTCGCGAAAGTCAGCTGCT-TCTGCTTC 31 ** * * consensus_15245#1 TTCACCAGG-TTGGGGTTTTAGGGAAAGCATTTGATCA-GGGATCAA-TAATGC-CAACT 434 consensus_15245#3 TTCACCAGGGTTGGGGTTTTAGGGAAAGCATTTGATCACGGGATCAAATAATTCGCAACC 288 consensus_15245#2 GTGGGCATTGCAGGAGCTAGT-AGGGAG----T----A-CAGAAAAAATAATA---G--C 507 consensus_15245#6 GTGGGCCTTGCCGGAGCTAGTGAGGGAG----TGACCA-GAGAAAAATGAATG---AGCT 76 consensus_15245#0 TTCACCAGGGTTGGGGGTTTAGGGAAAGCATTTGATCA-GGGATCAATAATTGC--AACC 709 consensus_15245#4 TTCTTCTTCTTTCGGATTCGAGAAGAGGATGTCCATCTCGCTNCGCCTNGGGGTCCCGAC 100 consensus_15245#5 TTCTTCTTCTTTCGGATTCGAGAAGAGGANGTCCATCTCGCTGNGCCTCGCGGTCCCGAC 91 * * * * * consensus_15245#1 TG---CCATCATCTGCAT---CAC-GTTATCCC---TGGATGATGTTGTTCTGAG----- 479 consensus_15245#3 TGTGCCCATCATCTGCATGCACAA-GTTACTCCCCTTAGATGATGTTGTTCTGAG----- 342 consensus_15245#2 T----TTGTAAT--GCAA---CAC-CCTATC------AGACTTTGTGGCCTTGA------ 545 consensus_15245#6 T----TTGTAAT--GCA----CAC-CCTATC------AGACTTTGTGGCCTTGA------ 113 consensus_15245#0 TTGG-CCATCATCTGCAT---CACAGTTATCCCC--TTGATGATGTTGTTCTGAG----- 758 consensus_15245#4 GGCG-GCGCCCC--GTGCTGCCGC-GCTGCNATNCN-TGNCGGTNCGGGCNGCGGGCTCC 155 consensus_15245#5 GGCG-GCGCCCCC-GTNCTGCCGCCGCTGCGANTNCATAGCGGTGCGGGCGGCGGGCTCC 149 * * * * * consensus_15245#1 TCAGATTAA----CTGCAACCT-TGTT-----CTTGTGGCC-TTCCAGGAGCTAGTAGGG 528 consensus_15245#3 TCAGATTGAAGCTCGGCAAGCC-AGTTGTTCACTTGTGGCCATTCCAGGAGCTAGTAGG- 400 consensus_15245#2 TAAAAGTAATAATTTATGAGAT-GGCTA-----CAGAAATGTTTACTGAAAAAAAAAA-- 597 consensus_15245#6 TAAAAGTAATAATTTATGAGAT-GGCTA-----CAGAAATGTTTACTGAAAAAAAAAA-- 165 consensus_15245#0 TCAGATTAA--GCTGGCAAGCC--GTTGTTC-ATTGTGGGCATTGCAGGAGCTAGTAGGG 813 consensus_15245#4 CCCGCCNGCTNCNTTGCGAGCTGGNGCGCGCTCAGGGGATGCGCCTNGCTGCCG-CTGAA 214 consensus_15245#5 CCCGNCGNCCGNTNTNCGAAC--GGNNGAGCTCAGGGGATGCGCCTNGTTGCCGGCTG-- 205 * * * consensus_15245#1 AGTACGAAAAATAATAGCTTTGTAACCAACACCCTATCAGACTTGTGCTGATAAAAGTAA 588 consensus_15245#3 ------------------------------------------------------------ consensus_15245#2 ------------------------------------------------------------ consensus_15245#6 ------------------------------------------------------------ consensus_15245#0 AGTACAGAAAAAATAATAGCTTTGTAATGCAACACCCTATCAGACTTTGTGGCCTTGATA 873 consensus_15245#4 GCCGCAGCCGC------------------------------------------------- 225 consensus_15245#5 ------------------------------------------------------------ consensus_15245#1 TAATTTATGAGATGCTACAGAAATGTTTACTGAAAAA----------------------- 625 consensus_15245#3 ------------------------------------------------------------ consensus_15245#2 ------------------------------------------------------------ consensus_15245#6 ------------------------------------------------------------ consensus_15245#0 AAAGTAATAATTTATGAGATGGCTACAGAAATGTTTACTGAAAAAAATGTCTTCAGGGAT 933 consensus_15245#4 ------------------------------------------------------------ consensus_15245#5 ------------------------------------------------------------ consensus_15245#1 ------------------------------------------------------------ consensus_15245#3 ------------------------------------------------------------ consensus_15245#2 ------------------------------------------------------------ consensus_15245#6 ------------------------------------------------------------ consensus_15245#0 TTGCTCATTTTCTCATTTCTTAATCTCTTTCGCAATCTTGCAAACAATTGATGCTTGTAT 993 consensus_15245#4 ------------------------------------------------------------ consensus_15245#5 ------------------------------------------------------------ consensus_15245#1 ------------------------------------------------------------ consensus_15245#3 ------------------------------------------------------------ consensus_15245#2 ------------------------------------------------------------ consensus_15245#6 ------------------------------------------------------------ consensus_15245#0 GGCCTATATACAATTATACAACTTAAAAGGCATGCCGAACCTTACAAAAGAAAAGAAAAA 1053 consensus_15245#4 ------------------------------------------------------------ consensus_15245#5 ------------------------------------------------------------ consensus_15245#1 ------------------------- consensus_15245#3 ------------------------- consensus_15245#2 ------------------------- consensus_15245#6 ------------------------- consensus_15245#0 GGGCATGCCGATGGCCAAAAAAAAA 1078 consensus_15245#4 ------------------------- consensus_15245#5 ------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||