These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15279#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 15 consensus length = 1235 fasta sequence [TCCCCCCACCGATTTCGTCCCCTCCGGCGGCGGCGGCGGCGGCGGCGCACGGCTTCTCCGGGAGCTCTACGCGACAAAACAATGAGGAGGTACAGCCCACCATATCGCAGTCCCCCTAGGAGGGGCTATGGTGGCAGAGGAAGAAGTCCCCCTAGGAGGGGATATGGAGGACGGAGGGAGCAGGGTTCTGGAAGTCTCTTGGTCCGCAACATCCCATTAAGCTGCAGAGGGGAGGATCTTCGAGTTCCTTTTGAAAGGTTTGGTCCTGTTCGGGATGTTTACCTGCCAAAGGATTATTACAGCGGGGAACCACGGGGATTTGCATTTGTGGAGTTCGTTGACCCTTATGATGCCTCTGAGGCTCAATATCACATGAATCGCCAGGTGTTTTTCGGCCGGGAGATAACTGTTGTTCTTGCTGCTGAGTCGCGGAAAAGGCCAGAGGAAATGCGCAGTAGAGCTAGAGTCAGGGGTTACTCTGGAAACGAAGGGCGCCGCTCTTCATATTATGGGAGGTCTCGTTCCCGTTCTCGCTCTCCCCACTATCGAGGTCGTCCACGGTCAAGGTCATACTCTCCTGCTCCAAGACGGCGAGATGACTACTCAGCTTCCCCACCGAGAAAGGATACGCACCCCACAAAATCTCCTAGGCGTCAGCCAAAAGAACATGATGAAGAGAAGAAGCGGAGATCCTACTCTCCTGCCAGTAGAGATGGCGACCCTCGCGATGCTGATAACGGTTATGAGAAGAGGTC-GCCCCCACCTGACAGCGATGGATCCC-CTCCACACCGGAGGTCTCCTAGGCACTCCTCAGGGTC-GCCTCCAGGATCCCGCTCTAGGTC-C-GCC-GATGT-TTC-CC-CTGCC-CGCAGCGA-CTGAC-AGAACTTTGAACCAACGAAATGGGATAGCTGCATGATCTCCACAGCACCTCCAATTCTAGTCAGTCT-CCATCTTCCT-TCCTGGTCC-AACCAAGCTGTTTCAATTAAACCGAAG-CCCTAAGCGGCGTGTTGTATTATTGCTAAGTGTGCTTGCCATGAGTTTGGTATGGCACATCGCCTGTTTGTGTGCTCATATGTTGGGAGTCCAGGATGTTGTAGTCTTTTGAGAGCTGCTTTGTTTGGTGGTCATTTGCTTTTTGCTGAACATTAACTTGAAACA-ATGTGACA-TTGGTGTTGTGTACTACCACTAGTGAG-CCTTGAACTGGGTAACCGCCTATTTCCACATCTATCAAAGCTTGTGAG] [+] EMBL CF277402 [TCCCCCCACCGATTTCGTCCCCTCCGGCGGCGGCGGCGGCGGCGGCGCACGGCTTCTCCGGGAGCTCTACGCGACAAAACAATGAGGAGGTACAGCCCACCATATCGCAGTCCCCCTAGGAGGGGCTATGGTGGCAGAGGAAGAAGTCCCCCTAGGAGGGGATATGGAGGACGGAGGGAGCAGGGTTCTGGAAGTCTCTTGGTCCGCAACATCCCATTAAGCTGCAGAGGGGAGGATCTTCGAGTTCCTTTTGAAAGGTTTGGTCCTGTTCGGGATGTTTACCTGCCAAAGGATTATTACAGCGGGGAACCACGGGGATTTGCATTTGTGGAGTTCGTTGACCCTTATGGTGCCTCTGAGGCTCAATATCACATGAATCGCCAGGTGTTTTTCGGCCGGGAGATAACTGTTGTTCTTGCTGCT ] [+] EMBL CF277876 [ CCCCCACCGATTTCGTCCCCTCCGGCGGCGGCGGCGGCGGCGGCGCACGGCTTCTCCGGGAGCTCTACGCGACAAAACAATGAGGAGGTACAGCCCACCATATCGCAGTCCCCCTAGGAGGGGCTATGGTGGCAGAGGAAGAAGTCCCCCTAGGAGGGGATATGGAGGACGGAGGGAGCAGGGTTCTGGAAGTCTCTTGGTCCGCAACATCCCATTAAGCTGCAGAGGGGAGGATCTTCGAGTTCCTTTTGAAAGGTTTGGTCCTGTTCGGGATGTTTACCTGCCAAAGGATTATTACAGCGGGGAACCACGGGGATTTGCATTTGTGGAGTTCGTTGACCCTTATGATGCCTCTGAGGCTCAATATCACATGAATCGCCAGGTGTTTTTCGGCCGGGAGATAACTGTTGTTCTTGCTGCTGAGTCGCGGAAAAGGCCAGAGGAAATGCGCAGTAGAGCTAGAGTCAGGGGTTACTCTGGAAACGAAGGGCGCCGCTCTTCATATTATGGGAGGTCTCGTTCCCGTTCTCGCTCTCCCCACTATCGAGGTCGTCCACGGTCAAGGTCATACTCTCCTGCTCCAAGACGGCGAGATGACTACTCAGCTTCCCCACCGAGAAAGGATA ] [+] EMBL AK065531 [ CCCACCGATTTCGTCCCCTCCGGCGGCGGCGGCGGCGGCGGCGCACGGCTTCTCCGGGAGCTCTACGCGACAAAACAATGAGGAGGTACAGCCCACCATATCGCAGTCCCCCTAGGAGGGGCTATGGTGGCAGAGGAAGAAGTCCCCCTAGGAGGGGATATGGAGGACGGAGGGAGCAGGGTTCTGGAAGTCTCTTGGTCCGCAACATCCCATTAAGCTGCAGAGGGGAGGATCTTCGAGTTCCTTTTGAAAGGTTTGGTCCTGTTCGGGATGTTTACCTGCCAAAGGATTATTACAGCGGGGAACCACGGGGATTTGCATTTGTGGAGTTCGTTGACCCTTATGATGCCTCTGAGGCTCAATATCACATGAATCGCCAGGTGTTTTTCGGCCGGGAGATAACTGTTGTTCTTGCTGCTGAGTCGCGGAAAAGGCCAGAGGAAATGCGCAGTAGAGCTAGAGTCAGGGGTTACTCTGGAAACGAAGGGCGCCGCTCTTCATATTATGGGAGGTCTCGTTCCCGTTCTCGCTCTCCCCACTATCGAGGTCGTCCACGGTCAAGGTCATACTCTCCTGCTCCAAGACGGCGAGATGACTACTCAGCTTCCCCACCGAGAAAGGATACGCACCCCACAAAATCTCCTAGGCGTCAGCCAAAAGAACATGATGAAGAGAAGAAGCGGAGATCCTACTCTCCTGCAAGTAGAGATGGCGACCCTCGCGATGCTGATAACGGTTATGAGAAGAGGTC GCCCCCACCTGACAGCGATGGATCCC CTCCACACCGGAGGTCTCCTAGGCACTCCTCAGGGTC GCCTCCAGGATCCCGCTCTAGGTC C GCC GATGT TTC CC CTGCC CGCAGCGA CTGAC AGAACTTTGAACCAACGAAATGGGATAGCTGCATGATCTCCACAGCACCTCCAATTCTAGTCAGTCT CCATCTTCCT TCCTGGTCC AACCAAGCTGTTTCAATTAAACCGAAG CCCTAAGCGGCGTGTTGTATTATTGCTAAGTGTGCTTGCCATGAGTTTGGTATGGCACATCGCCTGTTTGTGTGCTCATATGTTGGGAGTCCAGGATGTTGTAGTCTTTTGAGAGCTGCTTTGTTTGGTGGTCATTTGCTTTTTGCTGAACATTAACTTGAAACA ATGTGACA TTGGTGTTGTGTACTACCACTAGTGAG CCTTGAACTGGGTAACCGCCTATTTCCACATCTATCTATGCTTGTGAG] [+] EMBL AU166707 [ CCCTAGGAGGGGATATGGAGGACGGAGGGAGCAGGGTTCTGGAAGTCTCTTGGTCCGCAACATCCCATTAAGCTGCAGAGGGGAGGATCTTCGAGTTCCTTTTGAAAGGTTTGGTCCTGTTCGGGATGTTTACCTGCCAAAGGATTATTACAGCGGGGAACCACGGGGATTTGCATTTGTGGAGTTCGTTGACCCTTATGATGCCTCTGAGGCTCAATATCACATGAATCGCCAGGTGTTTTTCGGCCGGGAGATAACTGTTGTTCTTGCTGCTGAGTCGCGGAAAAGGCCAGAGGAAATGCGCAGTAGAGCTAGAGTCAGGGGTTACTCTGGAAACGAAGGGCGCCGCTCTTCATATTATGGGAGGTCTCGTTCCCGTTCTCGCTCTTCCCAC ] [+] EMBL BP185093 [ acGAGG GGAGGGAGCAGGGTTCTGGAAGTCTCTTGGTCCGCAACATCCCATTAAGCTGCAGAGGGGAGGATCTTCGAGTTCCTTTTGAAAGGTTTGGTCCTGTTCGGGATGTTTACCTGCCAAAGGATTATTACAGCGGGGAACCACGGGGATTTGCATTTGTGGAGTTCGTTGACCCTTATGATGCCTCTGAGGCTCAATATCACATGAATCGCCAGGTGTTTTTCGGCCGGGAGATAACTGTTGTTCTTGCTGCTGAGTCGCGGAAAAGGCCAGAGGAAATGCGCAGTAGAGCTAGAGTCAGGGGTTACTCTGGAAACGAAGGGCGCCGCTCTTCATATTATGGGAGGTCTCGTTCCCGTTCTCGCTCTCCCCACTATCGAGGTCGTCCACGGTCAAGGTCATACTCTCCTGCTCCAAGACGGCGAGATGACTACTCAGCTTCCCCACCGAGAAAGGATACGCACCCCACAAAATCTCCTAGGCGTCAGCCAAAAGAACATGATGAAGAGAAGAAGCGGAGATCCTACTCTCCTGCCAGTAGAGATGGCGACCCTCGCGATGCTGATAACGGTTATGAGAAGAGGTC GCCCCCACCTGACAGCGATGGATCCC CTCCACACCGGAGGTCTCCTAGGCACTCCTCAGGG ] [+] EMBL CB665029 [ AGGACCGAGGGAGCAGGGTTCTGGAAGTCTCTTGGTCCGCAACATCCCATTAAGCTGCAGAGGGGAGGATCTTCGAGTTCCTTTTGAAAGGTTTGGTCCTGTTCGGGATGTTTACCTGCCAAAGGATTATTACAGCGGGGAACCACGGGGATTTGCATTTGTGGAGTTCGTTGACCCTTATGATGCCTCTGAGGCTCAATATCACATGAATCGCCAGGTGTTTTTCGGCCGGGAGATAACTGTTGTTCTTGCTGCTGAGTCGCGGAAAAGGCCAGAGGAAATGCGCAGTATAGCTAGAGTCAGGGGTTACTCTGGAAACGAAGGGCGCCGCTCTTCATATTATGGGAGGTCTCGTTCCCGTTCTCGCTCTCCCCACTATCGAGGTCGTCCACGGTCAAGGTCATACTCTCCTGCTCCAAGACGGCGAGATGACTACTCAGCTTCCCCACCGAGAAAGGATACGCACCCCACAAAATCTCCTAGGCGTCAGCCAAAAGAACATGATGAAGAGAAGAAGCGGAGATCCTACTCTCCTGCCAGTAGAGATGGCGACCCTCGCGATGCTGATAACGGTTATGAGAAGAGGTC GCCCCCACCTGACAGCGATGGATCCC CTCCACACCGGAGGTCTCCTAGGCACTCCTCAGGGTC GCCTCCAGGATCCCGCTCTAGGTC C GCC GATGT TTC CC CTGCC CGCAGCGA CTGAC AGAACTTTGAACCAACGAAATGGGATAGCTGCATGATCTCCACAGCACCTCCAATTCTAGT ] [+] EMBL AB110200 [ AGGGTTCTGGAAGTCTCTTGGTCCGCAACATCCCATTAAGCTGCAGAGGGGAGGATCTTCGAGTTCCTTTTGAAAGGTTTGGTCCTGTTCGGGATGTTTACCTGCCAAAGGATTATTACAGCGGGGAACCACGGGGATTTGCATTTGTGGAGTTCGTTGACCCTTATGATGCCTCTGAGGCTCAATATCACATGAATCGCCAGGTGTTTTTCGGCCGGGAGATAACTGTTGTTCTTGCTGCTGAGTCGCGGAAAAGGCCAGAGGAAATGCGCAGTAGAGCTAGAGTCAGGGGTTACTCTGGAAACGAAGGGCGCCGCTCTTCATATTATGGGAGGTCTCGTTCCCGTTCTCGCTCTCCCCACTATCGAGGTCGTCCACGGTCAAGGTCATACTCTCCTGCTCCAAGACGGCGAGATGACTACTCAGCTTCCCCACCGAGAAAGGATACGCACCCCACAAAATCTCCTAGGCGTCAGCCAAAAGAACATGATGAAGAGAAGAAGCGGAGATCCTACTCTCCTGCCAGTAGAGATGGCGACCCTCGCGATGCTGATAACGGTTATGAGAAGAGGTC GCCCCCACCTGACAGCGATGGATCCC CTCCACACCGGAGGTCTCCTAGGCACTCCTCAGGGTC GCCTCCAGGATCCCGCTCTAGGTC C GCC GATGT TTC CC CTGCC CGCAGCGA CTGAC AGAACTTTGAACCAACGAAATGGGATAGCTGCATGATCTCCACAGCACCTCCAATTCTAGTCAGTCT CCATCTTCCT TCCTGGTCC AACCAAGCTGTTTCAATTAAACCGAAG CCCTAAGCGGCGTGTTGTATTATTGCTAAGTGTGCTTGCCATGAGTTTGGTATGGCACATCGCCTGTTTGTGTGCTCATATGTTGGGAGTCCAGGATGTTGTAGTCTTTTGAGAGCTGCTTTGTTTGGTGGTCATTTGCTTTTTGCTGAACATTAACTTGAAACA ATGTGACA TTGGT ] [-] EMBL CB665030 [ AAAGGCCAGAGGAAATGCGCAGTAGAGCTAGAGTCAGGGGTTACTCTGGAAACGAAGGGCGCCGCTCTTCATATTATGGGAGGTCTCGTTCCCGTTCTCGCTCTCCCCACTATCGAGGTCGTCCACGGTCAAGGTCATACTCTCCTGCTCCAAGACGGCGAGATGACTACTCAGCTTCCCCACCGAGAAAGGATACGCACCCCACAAAATCTCCTAGGCGTCAGCCAAAAGAACATGATGAAGAGAAGAAGCGGAGATCCTACTCTCCTGCCAGTAGAGATGGCGACCCTCGCGATGCTGATAACGGTTATGAGAAGAGGTC GCCCCCACCTGACAGCGATGGATCCC CTCCACACCGGAGGTCTCTTAGGCACTCCTCAGGGTC GCCTCCAGGATCCCGCTCTAGGTC C GCC GATGT TTC CC CTGCC CGCAGCGA CTGAC AGAACTTTGAACCAACGAAATGGGATAGCTGCATGATCTCCACAGCACCTCCAATTCTAGTCAGTCT CCATCTTCCT TCCTGGTCC AACCAAGCTGTTTCAATTAAACCGAAG CCCTAAGCGGCGTGTTGTATTATTGCTAAGTGTGCTTGCCATGAGTTTGGTATGGCACATCGCCTGTTTGTGTGCTCATATGTTGGGAGTCCAGGATGTTGTAGTCTTTTGAGAGCTGCTTTGTTTGGTGGTCATTTGCTTTTTGCTGAACATTAACTTGAAACAGATGTGACACTTGGTGTTGTGTACTACCACTAGTGAG CCTTGAACTGGGTAACCGCCTATTTCCAC ] [-] EMBL CF277403 [ CAAAAGAACATGATGAAGAGAAGAAGCGGAGATCCTACTCTCCTGCCAGTAGAGATGGCGACCCTCGCGATGCTGATAACGGTTATGAGAAGAGGTC GCCCCCACCTGACAGCGATGGATCCC CTCCACACCGGAGGTCTCCTAGGCACTCCTCAGGGTC GCCTCCAGGATCCCGCTCTAGGTC C GCC GATGT TTC CC CTGCC CGCAGCGA CTGAC AGAACTTTGAACCAACGAAATGGGATAGCTGCATGATCTCCACAGCACCTCCAATTCTAGTCAGTCT CCATCTTCCT TCCTGGTCC AACCAAGCTGTTTCAATTAAACCGAAG CCCTAAGCGGCGTGTTGTATTATTGCTAAGTGTGCTTGCCATGAGTTTGGTATGGCACATCGCCTGTTTGTGTGCTCATATGTTGGGAGTCCAGGATGTTGTAGTCTTTTGAGAGCTGCTTTGTTTGGTGGTCATTTGCTTTTTGCTGAACATTAACTTGAAACA ATGTGACA TTGGTGTTGTGTACTACCACTAGTGAG CCTTGAACTGGGTAGCCGCCTATTTCCACATCTATCAAAaaaac ] [+] EMBL BI811507 [ TCTCCTGCAGGTAGAGATGGCGACCCTCGCGATGCTGATAACGGTTATGAGAAGA GTC GCCCCCACCTGACAGCGATGGATCCC CTCCACACCGGAGGTCTCCTAGGCACTCCTCA GGTC GCCTCCAGGATCCCGCTCTAGGTC C GCC GATGT TTC CC CTGCC CGCAGCGA CTGAC AGAACTTTGAACCAACGAAATGGGATAGCTGCATGATCTCCACAGCACCTCCAATTCTAGTCAGTCT CCATCTTCCT TCCTGGTCC AACCAAGCTGTTTCAATTAAACCGAAG CCCTAAGCGGCGTGTTGTATTATTGCTAAGTGTGCTTGTCATGAGTTTGGTATGGCACATCGCCTGTTTGTGTGCTCATATGTTGGGAGTCCAGGATGTTGTAGTCTTTTGAGAGCTGCTTTGTTTGGTGGTCATTTGCTTTTTGCTGAAC TTAACTTGAAAC ATGTGACA TTGGTGTTGTGTACTACCACTAGTGAGCCCTTGAACTGGGTAAaaaaaaaa ] [+] EMBL BI795514 [ agaAAGA GTCTGCCCCCACCTGACA CGATGGATCCCACTCCACACCGGAGGTCTCCTAGGCACTCCTCAGGGTCTGCCTCCAGGATCCCGCTCTAGGTC C GCCAGATGTGTTC CCACTGCCACGCAGCGATCTGACAAGAACTTTGAACCAACGAAATGGGATAGCTGCATGATCTCCACAGCACCTCCAATTCTAGTCAGTCTGCCATCTTCCTGTCCTGGTCCAAACCAAGCTGTTTCAATTAAACCGAAG CCCTAAGCGGCGTGTTGTATTATTGCTAAGTGTGCTTGTCATGAGTTTGGTATGGCACCTCGCCTGTTTGTGTGCTCATATGTTGGGAGTCCAGGATGTTGTAGTCTTTTGAGAGCTGCTTTGTTTGGTGGTCATTTGCTTTTTGCTGAACATTAACTTGAAACC ATGTGACA TTGGTGTTGTGTACTACCACTAGTGAG CCTTGAACTGGGTAAaaaaaaaa ] [+] EMBL BI811375 [ CGATGGATCCC CTCCACACCGGAGTTCTCCTAGGCACTCCTCAGGTTC CCTCCAGGATCCCGCTCTAGGTCACAGCCAGATGT TTCACC CTGCCACGCAGCGA CTGACAAGAACTTTGAACCAACGAAATGGGATAGCTGCATGATCTCCACAGCACCTCCAAATTTAGTCAGTCT CCATCTTCCT TCCTGGTCCAAACCAAGCTGTTTCAATTAAACCGAAG CCCTAAGCGGCGTGTTGTATTATTGCTAAGTGTGCTTGTCATGAGTTTGGTATGGCACATCGCCTGTTTGTGTGCTCATATGTTGGGAGTCCAGGATGTTGTAGTCTTTTGAGA CTGCTTTGTTTGGTGGTCATTTGCTTTTTGCTGAACATTAACTTGAAACA ATGTGACA TTGGTGTTGTGTACTACCACTAGTGAGCCCTTGAACTGGGTAACCGCCTATTTCCACAaaaaaaaaa ] [+] EMBL BI805064 [ TCTAGGTC C GCC GATGT TTC CC CTGCC CGCAGCGA CTGAC AGAACTTTGAACCCACGAAATGGGATAGCTGCATGATCTCCACAGCACCTCCCATTCTAGTCAGTCT CCATCTTCCT TCCTGGTCC AACCCAGCTGTTTCAATTAAACCGAAG CCCTAAGCGGCGTGTTGTATTATTGCTAAGTGTGCTTGCCCTGAGTTTGGTATGGCACATCGCCTGTTTGTGTGCTCATATGTTGGGAGTCCCGGATGTTGTAGTCTTTTGAGAGCTGCTTTGTTTGGTGGTCATTTGCTTTTTGCTGAACATTAACTTGAAACC ATGTGACA TTGGTGTTGTGTACTACCCCTAGTGAGCCCTTGAAaaaaaaaa ] [+] EMBL CF331743 [ T TCCTGGTCC AACCAAGCTGTTTCAATTAAACCGAAG CCCTAAGCGGCGTGTTGTATTATTGCTAAGTGTGCTTGCCATGAGTTTGGTATGGCACATCGCCTGTTTGTGTGCTCATATGTTGGGAGTCCAGGATGTTGTAGTCTTTTGAGAGCTGCTTTGTTTGGTGGTCATTTGCTTTTTGCTGAACATTAACTTGAAACA ATTTGACA TTGGTGTTGTGTACTACCACTAGTGAG CCTTGAACTGGGTAACCGCCTAaaaaaaaa ] [-] EMBL CF331742 [ TCCTGGTCC AACCAAGCTGTTTCAATTAAACCGAAGCCCCTAAGCGGCGTGTTGTATTATTGCTAAGTGTGCTTGCCATGAGTTTGGTATGGCACATCGCCTGTTTGTGTGCTCATATGTTGGGAGTCCAGGATGTTGTAGTCTTTTGAGAGCTGCTTTGTTTGGTGGTCATTTGCTTTTTGCTGAACATTAACTTGAAACA ATTTGACA TTGGTGTTGTGTACTACCACTAGTGAG CCTTGAACTGGGTAACCGCCTAaaaaaaaaa ] consensusID : consensus_15279#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 595 fasta sequence [CGGGATTNGNNGGGGNGAGGGGAANTCTTTTTTCCCCNNTAANGGGGGGGACCCTNGGGNGGGAAANGGTAGGNNGNANGGGTTTCCCCCNNCNAAAAGGGNGGATTCCCCCTCCAANCCGGGGGGTTTNCTGGGAATTTCTTAGGGTTTGCTTCAGNAAACCNGTTTAGGTTCNCCGGAATNTTNCCCCTGGCCCNNCAGGGGGAATGNAAAAGAAATTGGAACCAAAGGGAATGGGGATAGGTGGCATGAANTTTCAACAGCACCTTCCANTTNTAGTCAGTTTCCATTTTTCCTTTCCTGGGTCCAAACCAAGCTGTTTCAAATTAAACNGGAAGCCNTAAGCGGGCGTGTTGTATTATTGCTAAGTGTGCTTGTCATGAGTTTGGTATGGCAACATCGCCTGTTTGTGTGCTCATATGTTGAGTCCAGGATGTTGTAGTCTTTTGAGAGCTGCTTTGTTTGGTGGTCATTTGCTTTTTGCTGAACATTAACTTGAAACAATGTGACATTGGTGTTGTGTACTACCACTAGTGAGCCTTGAACTGGGTAACCGCCTATTTCCACATCTATNTATGCTTGTGAGTGCTTAGCC] [-] EMBL BE229148 [CGGGATTNGNNGGGGNGAGGGGAANTCTTTTTTCCCCNNTAANGGGGGGGACCCTNGGGNGGGAAANGGTAGGNNGNANGGGTTTCCCCCNNCNAAAAGGGNGGATTCCCCCTCCAANCCGGGGGGTTTNCTGGGAATTTCTTAGGGTTTGCTTCAGNAAACCNGTTTAGGTTCNCCGGAATNTTNCCCCTGGCCCNNCAGGGGGAATGNAAAAGAAATTGGAACCAAAGGGAATGGGGATAGGTGGCATGAANTTTCAACAGCACCTTCCANTTNTAGTCAGTTTCCATTTTTCCTTTCCTGGGTCCAAACCAAGCTGTTTCAAATTAAACNGGAAGCCNTAAGCGGGCGTGTTGTATTATTGCTAAGTGTGCTTGTCATGAGTTTGGTATGGCAACATCGCCTGTTTGTGTGCTCATATGTTGAGTCCAGGATGTTGTAGTCTTTTGAGAGCTGCTTTGTTTGGTGGTCATTTGCTTTTTGCTGAACATTAACTTGAAACAATGTGACATTGGTGTTGTGTACTACCACTAGTGAGCCTTGAACTGGGTAACCGCCTATTTCCACATCTATNTATGCTTGTGAGTGCTTAGCC] consensusID : consensus_15279#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 443 fasta sequence [CCTCCGGCGGCGGCGGCGGCGGCGGCGCACGGCTTCTCCGGGAGCTCTACGCGACAAAACAATGAGGAGGTACAGCCCACCATATCGCAGTCCCCCTAGGAGGGGCTATGGTGGCAGAGGAAGAAGTCCCCCTAGGAGGGGATATGGAGGACGGAGGGAGCAGGGTTCTGGAATTCTCTTGGTCCGCAACATCCCATTAAGCTGCAGAGGGGAGGATCTTCGAGTTCCTTTTGAAAGGTTTGGTCCTGTTCGGGATGTTTACCTGCCAAAGGATTATTACAGCGGGTAAGGCATTACTGAACAATTATATTAACATAATTTGGTTTGTTAGTTGTCAATTGCTGAACAACATTTATCTTCTTTACTCTAGCGTAGTAAATGTAGATTGTCTATATTTGTCTGTGCTGTTGGCCTGTCGTTGAAATGATTTTACAAGCTGTTCT] [+] EMBL CB638990 [CCTCCGGCGGCGGCGGCGGCGGCGGCGCACGGCTTCTCCGGGAGCTCTACGCGACAAAACAATGAGGAGGTACAGCCCACCATATCGCAGTCCCCCTAGGAGGGGCTATGGTGGCAGAGGAAGAAGTCCCCCTAGGAGGGGATATGGAGGACGGAGGGAGCAGGGTTCTGGAATTCTCTTGGTCCGCAACATCCCATTAAGCTGCAGAGGGGAGGATCTTCGAGTTCCTTTTGAAAGGTTTGGTCCTGTTCGGGATGTTTACCTGCCAAAGGATTATTACAGCGGGTAAGGCATTACTGAACAATTATATTAACATAATTTGGTTTGTTAGTTGTCAATTGCTGAACAACATTTATCTTCTTTACTCTAGCGTAGTAAATGTAGATTGTCTATATTTGTCTGTGCTGTTGGCCTGTCGTTGAAATGATTTTACAAGCTGTTCT] consensusID : consensus_15279#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 442 fasta sequence [GTCTCNTAGGCACTCCTCAGGGTCGCCTCCAGGATCCCGCTCTAGGTCCGCCNATGTTTCCCCTGCCCGCAGCGACTGACAGAACTTTGAACCAACGAAATGGGATAGCTGCATGATCTCCACAGCACCTCCAATTCTAGTCAGTCTCCATCTTCCTTCCTGGTCCAACCAAGCTGTTTCAATTAAACCGAAGCCCTAAGCGGCGTGTTGTATTATTGCTAAGTGTGCTTGCCATGAGTTTGGTATGGCACATCGCCTGTTTGTGTGCTCATATGTTGGGAGTCCAGNATGTTGTAGTCTTTTNANANCTGCTTTGTTTGGTGGTCATTTGCTTTTTGCTGAACATTAACTTGAAACAATGTGACATTGGTGTTGTGTACTACCACTAGTGANCCTTGAACTGGGTAACCGCCTATTTCCCCAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU166706 [GTCTCNTAGGCACTCCTCAGGGTCGCCTCCAGGATCCCGCTCTAGGTCCGCCNATGTTTCCCCTGCCCGCAGCGACTGACAGAACTTTGAACCAACGAAATGGGATAGCTGCATGATCTCCACAGCACCTCCAATTCTAGTCAGTCTCCATCTTCCTTCCTGGTCCAACCAAGCTGTTTCAATTAAACCGAAGCCCTAAGCGGCGTGTTGTATTATTGCTAAGTGTGCTTGCCATGAGTTTGGTATGGCACATCGCCTGTTTGTGTGCTCATATGTTGGGAGTCCAGNATGTTGTAGTCTTTTNANANCTGCTTTGTTTGGTGGTCATTTGCTTTTTGCTGAACATTAACTTGAAACAATGTGACATTGGTGTTGTGTACTACCACTAGTGANCCTTGAACTGGGTAACCGCCTATTTCCCCAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_15279#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 402 fasta sequence [TCAGGGTCGCCTCCAGGATCCCGCTCTAGGTCCGCCGATGTTTCCCCTGCCCGCAGCGACTGACAGAACTTTGAACCAACGAAATGGGATAGCTGCATGATCTCCACAGCACCTCCAATTTTAGTCAGTCTCCATCTTCCTT--CCTGGTCCAAC-CAAGCTGTTTCAATTAAA-CCGAAGCCCTAAGCGGCGTGTTGTATTATTGCT-AAGTGTGCTTGCCATGAGTTTGGTATGGCACATCGCCTGTTTGTGTGCTCATATGTTGGGAGTCCAGGATGTTGTAGTCTTTTGAGAGCTGCTTTGTTTGGTGGTCATTTGCTTTTTGCTGAACATTAACTTGAAACAATGTGACATTGGTGTTGTGTACTACCACTAGTGAGCCTTGAACTGGGTAAAAAAAAAAAA] [-] EMBL CF277877 [TCAGGGTCGCCTCCAGGATCCCGCTCTAGGTCCGCCGATGTTTCCCCTGCCCGCAGCGACTGACAGAACTTTGAACCAACGAAATGGGATAGCTGCATGATCTCCACAGCACCTCCAATTTTAGTCAGTCTCCATCTTCCTT CCTGGTCCAAC CAAGCTGTTTCAATTAAA CCGAAGCCCTAAGCGGCGTGTTGTATTATTGCT AAGTGTGCTTGCCATGAGTTTGGTATGGCACATCGCCTGTTTGTGTGCTCATATGTTGGGAGTCCAGGATGTTGTAGTCTTTTGAGAGCTGCTTTGTTTGGTGGTCATTTGCTTTTTGCTGAACATTAACTTGAAACAATGTGACATTGGTGTTGTGTACTACCACTAGTGAGCCTTGAACTGGGTAAAAAAAAAAAA] [+] EMBL D42900 [ cnaggcnAGTCGCCACCTTCCCTCCCCNGGCCCAACAAAANCTGTTCCAATTAAACCCGAAGCCCTAANCGGCGTGTTGTATTATTGCTAAAGTGTGCTTGCCATGAGTTTGGTATGGCACATCGCCTGTTTGTGTGCTCATATGTTGGGAGCCCAGGATGTTGTAGNCTTTTGAGAGCTGCTTTGTTTGGGGGTCATTTGCTTTTTGCTGAACATTAACTTGAAACAATGTGACATTGGTGTTGTGTACTACCACTAGTGAGCCTTG ] consensusID : consensus_15279#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 146 fasta sequence [CTCTGTTTGTGTGCTCATATGTTGGGAGTCCAGGATGTTGTAGTCTTTTGAGAGCTGCTTTGTTTGGTGGTCATTTGCTTTTTGCTGAACATTAACTTGAAACAATGTAACATTGGTGTTGTGTACTACCACACAAAGCAGCTCTC] [-] EMBL BI306047 [CTCTGTTTGTGTGCTCATATGTTGGGAGTCCAGGATGTTGTAGTCTTTTGAGAGCTGCTTTGTTTGGTGGTCATTTGCTTTTTGCTGAACATTAACTTGAAACAATGTAACATTGGTGTTGTGTACTACCACACAAAGCAGCTCTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15279#1 ------------------------------------------------------------ consensus_15279#5 ------------------------------------------------------------ consensus_15279#3 ------------------------------------------------------------ consensus_15279#4 ------------------------------------------------------------ consensus_15279#0 TCCCCCCACCGATTTCGTCCCCTCCGGCGGCGGCGGCGGCGGCGGCGCACGGCTTCTCCG 60 consensus_15279#2 ------------------------------------------------------------ consensus_15279#1 ------------------------------------------------------------ consensus_15279#5 ------------------------------------------------------------ consensus_15279#3 ------------------------------------------------------------ consensus_15279#4 ------------------------------------------------------------ consensus_15279#0 GGAGCTCTACGCGACAAAACAATGAGGAGGTACAGCCCACCATATCGCAGTCCCCCTAGG 120 consensus_15279#2 ------------------------------------------------------------ consensus_15279#1 ------------------------------------------------------------ consensus_15279#5 ------------------------------------------------------------ consensus_15279#3 ------------------------------------------------------------ consensus_15279#4 ------------------------------------------------------------ consensus_15279#0 AGGGGCTATGGTGGCAGAGGAAGAAGTCCCCCTAGGAGGGGATATGGAGGACGGAGGGAG 180 consensus_15279#2 ------------------------------------------------------------ consensus_15279#1 ------------------------------------------------------------ consensus_15279#5 ------------------------------------------------------------ consensus_15279#3 ------------------------------------------------------------ consensus_15279#4 ------------------------------------------------------------ consensus_15279#0 CAGGGTTCTGGAAGTCTCTTGGTCCGCAACATCCCATTAAGCTGCAGAGGGGAGGATCTT 240 consensus_15279#2 ------------------------------------------------------------ consensus_15279#1 ------------------------------------------------------------ consensus_15279#5 ------------------------------------------------------------ consensus_15279#3 ------------------------------------------------------------ consensus_15279#4 ------------------------------------------------------------ consensus_15279#0 CGAGTTCCTTTTGAAAGGTTTGGTCCTGTTCGGGATGTTTACCTGCCAAAGGATTATTAC 300 consensus_15279#2 ------------------------------------------------------------ consensus_15279#1 ------------------------------------------------------------ consensus_15279#5 ------------------------------------------------------------ consensus_15279#3 ------------------------------------------------------------ consensus_15279#4 ------------------------------------------------------------ consensus_15279#0 AGCGGGGAACCACGGGGATTTGCATTTGTGGAGTTCGTTGACCCTTATGATGCCTCTGAG 360 consensus_15279#2 ------------------------------------------------------------ consensus_15279#1 ------------------------------------------------------------ consensus_15279#5 ------------------------------------------------------------ consensus_15279#3 ------------------------------------------------------------ consensus_15279#4 ------------------------------------------------------------ consensus_15279#0 GCTCAATATCACATGAATCGCCAGGTGTTTTTCGGCCGGGAGATAACTGTTGTTCTTGCT 420 consensus_15279#2 ------------------------------------------------------------ consensus_15279#1 ------------------------------------------------------------ consensus_15279#5 ------------------------------------------------------------ consensus_15279#3 ------------------------------------------------------------ consensus_15279#4 ------------------------------------------------------------ consensus_15279#0 GCTGAGTCGCGGAAAAGGCCAGAGGAAATGCGCAGTAGAGCTAGAGTCAGGGGTTACTCT 480 consensus_15279#2 ------------------------------------------------------------ consensus_15279#1 ------------------------------------------------------------ consensus_15279#5 ------------------------------------------------------------ consensus_15279#3 ------------------------------------------------------------ consensus_15279#4 ------------------------------------------------------------ consensus_15279#0 GGAAACGAAGGGCGCCGCTCTTCATATTATGGGAGGTCTCGTTCCCGTTCTCGCTCTCCC 540 consensus_15279#2 ------------------------------------------------------------ consensus_15279#1 ------------------------------------------------------------ consensus_15279#5 ------------------------------------------------------------ consensus_15279#3 ------------------------------------------------------------ consensus_15279#4 ------------------------------------------------------------ consensus_15279#0 CACTATCGAGGTCGTCCACGGTCAAGGTCATACTCTCCTGCTCCAAGACGGCGAGATGAC 600 consensus_15279#2 ------------------------------------------------------------ consensus_15279#1 ------------------------------------------------------------ consensus_15279#5 ------------------------------------------------------------ consensus_15279#3 ------------------------------------------------------------ consensus_15279#4 ------------------------------------------------------------ consensus_15279#0 TACTCAGCTTCCCCACCGAGAAAGGATACGCACCCCACAAAATCTCCTAGGCGTCAGCCA 660 consensus_15279#2 ------------------------------------------------------------ consensus_15279#1 ---------CGGGATTNGNNGGGGNGAGGGGAANTCTTTTTTCCCCNNTAANGGGGGGGA 51 consensus_15279#5 ------------------------------------------------------------ consensus_15279#3 ------------------------------------------------------------ consensus_15279#4 ------------------------------------------------------------ consensus_15279#0 AAAGAACATGATGAAGAGAAGAAGCGGAGATCCTACTCTCCTGCCAGTAGAGATGGCGAC 720 consensus_15279#2 ------------------------------------------------------------ consensus_15279#1 CCCTNGGGNGGGAAANGGTAGGNNGNANGGGTTTCCCCCNNCNAAAAGGGNGGATTCCCC 111 consensus_15279#5 ------------------------------------------------------------ consensus_15279#3 ------------------------------------------------------------ consensus_15279#4 ------------------------------------------------------------ consensus_15279#0 CCTCGCGATGCTGATAACGGTTATGAGAAGAGGTCGCCCCCACCTGACAGCGATGGATCC 780 consensus_15279#2 -------------------------------------------CCTCCGGCGGCGGCGGC 17 consensus_15279#1 CTCCAANCCGGGGGGTTTNCTGGGAATTTCTTAGGGTTTGCTTCAGNAAACCNGTTTAGG 171 consensus_15279#5 ------------------------------------------------------------ consensus_15279#3 --------------GTCTCNTAGGCACTCCTCAGGGTCGCCTCCAGGATCCCGCTCTAGG 46 consensus_15279#4 ------------------------------TCAGGGTCGCCTCCAGGATCCCGCTCTAGG 30 consensus_15279#0 CCTCCACACCGGAGGTCTCCTAGGCACTCCTCAGGGTCGCCTCCAGGATCCCGCTCTAGG 840 consensus_15279#2 GGCGGCGGCGCACGGCTTCTCCGGGAGCTCTACGCGACAAAACAATGAGGAGGTACAGCC 77 consensus_15279#1 TTCNCCGGAATNTTNCCCCTGGCCCNNCAGGGGGAATGNAAAAGAAATTGGAACCAAAGG 231 consensus_15279#5 ------------------------------------------------------------ consensus_15279#3 TCCGCCN--ATGTTTCCCCTG--CCCGCAGCGAC----TGACAGAACTTTGAACCAACG- 97 consensus_15279#4 TCCGCCG--ATGTTTCCCCTG--CCCGCAGCGAC----TGACAGAACTTTGAACCAACG- 81 consensus_15279#0 TCCGCCG--ATGTTTCCCCTG--CCCGCAGCGAC----TGACAGAACTTTGAACCAACG- 891 consensus_15279#2 CACCATATCGCAGTCCCCCTA----GGAGGGGCTATGGTGGCAGAGGAAGAAGTCCCCCT 133 consensus_15279#1 GAATGGGGATAGGTGGCATGAANTTTCAACAGCACCTTCCANTTNTAGTCAGTTTCCATT 291 consensus_15279#5 ------------------------------------------------------------ consensus_15279#3 -AAATGGGATAGCTG---CATGATCTCCACAGCACCT-CCAATTCTAGTCAGTCTCCATC 152 consensus_15279#4 -AAATGGGATAGCTG---CATGATCTCCACAGCACCT-CCAATTTTAGTCAGTCTCCATC 136 consensus_15279#0 -AAATGGGATAGCTG---CATGATCTCCACAGCACCT-CCAATTCTAGTCAGTCTCCATC 946 consensus_15279#2 AGGAGGGGATA--TGGAGGACGGAGGGAGCAGGGTTCTGGAATTCTC-TTGGTCCGCAAC 190 consensus_15279#1 TTTCCTTTCCTGGGTCCAAACCAAGCTGTTTCAAATTAAACNGGAAGCCNTAAGCGGGCG 351 consensus_15279#5 ------------------------------------------------------------ consensus_15279#3 TTCC--TTCCTGG--TCCAACCAAGCTGTTTCAA-TTAAACCG-AAGCCCTAAGCGG-CG 205 consensus_15279#4 TTCC--TTCCTGG--TCCAACCAAGCTGTTTCAA-TTAAACCG-AAGCCCTAAGCGG-CG 189 consensus_15279#0 TTCC--TTCCTGG--TCCAACCAAGCTGTTTCAA-TTAAACCG-AAGCCCTAAGCGG-CG 999 consensus_15279#2 ATCCCATTAAGCTGCAGAGGGGAGGATCTTCGAGTTCCTTTTGAAAGGTTTG-------G 243 consensus_15279#1 TGTTGTATTATTGCTAAGTGTGCTTGTCATGAGTTTGGTATGGCAACATCGCCTGTTTGT 411 consensus_15279#5 --------------------------------------------------CTCTGTTTGT 10 consensus_15279#3 TGTTGTATTATTGCTAAGTGTGCTTGCCATGAGTTTGGTATGGCA-CATCGCCTGTTTGT 264 consensus_15279#4 TGTTGTATTATTGCTAAGTGTGCTTGCCATGAGTTTGGTATGGCA-CATCGCCTGTTTGT 248 consensus_15279#0 TGTTGTATTATTGCTAAGTGTGCTTGCCATGAGTTTGGTATGGCA-CATCGCCTGTTTGT 1058 consensus_15279#2 TCCTGT----TCGGGATGTTTACCTGCCAAAGGATTATTACAGCG-GGTAAGGCATTACT 298 ** * consensus_15279#1 GTGCTCATATGTTG--AGTCCAGGATGTTGTAGTCTTTTGAGAGCTGCTTTGTTTGGTGG 469 consensus_15279#5 GTGCTCATATGTTGGGAGTCCAGGATGTTGTAGTCTTTTGAGAGCTGCTTTGTTTGGTGG 70 consensus_15279#3 GTGCTCATATGTTGGGAGTCCAGNATGTTGTAGTCTTTTNANANCTGCTTTGTTTGGTGG 324 consensus_15279#4 GTGCTCATATGTTGGGAGTCCAGGATGTTGTAGTCTTTTGAGAGCTGCTTTGTTTGGTGG 308 consensus_15279#0 GTGCTCATATGTTGGGAGTCCAGGATGTTGTAGTCTTTTGAGAGCTGCTTTGTTTGGTGG 1118 consensus_15279#2 GAACAATTATATT---AACATAATTTGGTTT-GTTAGTTGTCAATTGC--TGAACAACAT 352 * * *** ** * * ** * * ** ** * *** ** consensus_15279#1 TCATTTGCTTTTTGCTGA-ACATTAACTTGAAACAATGTGACATTG---GTGTTGT-GTA 524 consensus_15279#5 TCATTTGCTTTTTGCTGA-ACATTAACTTGAAACAATGTAACATTG---GTGTTGT-GTA 125 consensus_15279#3 TCATTTGCTTTTTGCTGA-ACATTAACTTGAAACAATGTGACATTG---GTGTTGT-GTA 379 consensus_15279#4 TCATTTGCTTTTTGCTGA-ACATTAACTTGAAACAATGTGACATTG---GTGTTGT-GTA 363 consensus_15279#0 TCATTTGCTTTTTGCTGA-ACATTAACTTGAAACAATGTGACATTG---GTGTTGT-GTA 1173 consensus_15279#2 TTATCTTCTTTACTCTAGCGTAGTAAATGTAGATTGTCTATATTTGTCTGTGCTGTTGGC 412 * ** * **** ** * *** * * * * * *** *** *** * consensus_15279#1 CTACCACT--AGTGAGCCTTGAACTGGGTAACCGCCTATTTCCACATCTATNTATGCTTG 582 consensus_15279#5 CTACCACACAAAGCAGCTCTC--------------------------------------- 146 consensus_15279#3 CTACCACT--AGTGANCCTTGAACTGGGTAACCGCCTATTTCCCCAAAAAAAAAAAAAAA 437 consensus_15279#4 CTACCACT--AGTGAGCCTTGAACTGGGTAA--------------AAAAAAAAAA----- 402 consensus_15279#0 CTACCACT--AGTGAGCCTTGAACTGGGTAACCGCCTATTTCCACATCTATCAAAGCTTG 1231 consensus_15279#2 CTGTCGTTGAAATGATTTTACAAGCTGTTCT----------------------------- 443 ** * * * consensus_15279#1 TGAGTGCTTAGCC 595 consensus_15279#5 ------------- consensus_15279#3 AAAAA-------- 442 consensus_15279#4 ------------- consensus_15279#0 TGAG--------- 1235 consensus_15279#2 ------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||