These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15285#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 16 consensus length = 1508 fasta sequence [GGAAACCGGCGAACTGCCAACATCCCCTGCCCCCATCTGGTAGCTATCTCGTCCTCCGTCCTCACCCGCCGCCGCCGCGACCGCGAGCTAAACCACGGCACCGCCGGCGACCTCGTGGACCTCGCCTGTCGCCACATCATCGCTGCCGTCGCCTACTCGCCTCCCCTCCCCGACCCCGACCCGATCCGCTCCGCTCCCCATTTGTTTATTCCGGCGCGTGAGCTAATCACCGCGAGGTCCACCGCCGCCGATAACACCCAAGCCAAGCGCGGTCGCTTCCGCGTCTTGATTTCCTCCTCCTCCTCCTCCTCCCACTCGCGTGCGTACCTCCGCCTTATTATATAGCGCTGGCCTGGGCGGGGCGGAAGAGCCAAATGGTGGCGCTGCTTCGCTCGTGCCGCCGCCTGATCCCGCACCTGTCCGCCTGCGCCGCCGCCGCGCCGTCGTCGTCATCGTCGTGCGCTCCTCGGGCTAGGCCGATCTCGCGGGGACTGCGGCTGCTGCCGGTGGTGCTCGCAATGGCGGGGTACAGCAGCGGCTCCGCCGCGGA-GGGGAGGAGGCTGCTGTTCAGGCAGCTGTTCGAGAAGGAGAGCTCCACCTACACCTACCTCCTCGCCGACGTCGGGGACCCCGAGAAACCCGCCGTGTTGATTGACCCTGTGGACAGAACAGTTGATAGAGATCTCAATCTTATCAAGGAGTTGGGCTTGAAGCTAGTCTATGCTATGAATACCCATGTGCATGC-TGATCATGTCACT-GGAACAGGATTAAT-AAAGACTAAGTTACCTGGAGTAAAGTCCGTGATTGCAAAAGTAAGCAAAGCAAAAGCAG-ACCATTTTATTGAGCATGGGGACAAAATATACTTCGGTAA-CCTC-TTCCTTGAGGTACGATCTACTCCTGG-CCATACTGCTGGCTGTGTGACTTATGTAACAGGTG-AAGGCGATGAT-CAACCTTCACCAAGAATGGCTTTTACTGGTGATGCCTTGCTTATACGTGCATGTGGAAGGACAGACTTTCAGGGAGGAAGTTCTGATGAGCTGTATGAGTCGGTG-CA-TTCGCAGATTTTCACATTGCCAAAGGATACCCTGCTTTATCCTGGCCATGACTACAAAGGTTTCACAGTAAGTACTGTTGAAGAGGAGGTTGCGTATAATGCTCGACTAACAAAGGATAAGGAAACATTCAAGAAAATTATGGACAACTTGAACTTGGCCTATCCAAAGATGATCGATGTAGCCGTGCCCGCGAATTTGCTCTGCGGTATTCAGGATCCTCCACCATCCAAGGTCTGAGCTGTTCCGGCTGAAGCTTTCAAGCTGTTGTGAACTCACGGTCAACTCGAGAAGCTCGCAGCTATGTTGTACATTAAATAATCTGTTGTTAATTTGTAAGGCACTACTTGGGAACATTTCCGCTTCATGAGATCAACGGTAATAATAATAAACAGAGGCTAGCTTGCCTCTTGTCTTGTGCTAAAAAAAACTCTCAGCGAAAGTCGGTTGAAAAAA] [+] EMBL AK067930 [GGAAACCGGCGAACTGCCAACATCCCCTGCCCCCATCTGGTAGCTATCTCGTCCTCCGTCCTCACCCGCCGCCGCCGCGACCGCGAGCTAAACCACGGCACCGCCGGCGACCTCGTGGACCTCGCCTGTCGCCACATCATCGCTGCCGTCGCCTACTCGCCTCCCCTCCCCGACCCCGACCCGATCCGCTCCGCTCCCCATTTGTTTATTCCGGCGCGTGAGCTAATCACCGCGAGGTCCACCGCCGCCGATAACACCCAAGCCAAGCGCGGTCGCTTCCGCGTCTTGATTTCCTCCTCCTCCTCCTCCTCCCACTCGCGTGCGTACCTCCGCCTTATTATATAGCGCTGGCCTGGGCGGGGCGGAAGAGCCAAATGGTGGCGCTGCTTCGCTCGTGCCGCCGCCTGATCCCGCACCTGTCCGCCTGCGCCGCCGCCGCGCCGTCGTCGTCATCGTCGTGCGCTCCTCGGGCTAGGCCGATCTCGCGGGGACTGCGGCTGCTGCCGGTGGTGCTCGCAATGGCGGGGTACAGCAGCGGCTCCGCCGCGGA GGGGAGGAGGCTGCTGTTCAGGCAGCTGTTCGAGAAGGAGAGCTCCACCTACACCTACCTCCTCGCCGACGTCGGGGACCCCGAGAAACCCGCCGTGTTGATTGACCCTGTGGACAGAACAGTTGATAGAGATCTCAATCTTATCAAGGAGTTGGGCTTGAAGCTAGTCTATGCTATGAATACCCATGTGCATGC TGATCATGTCACT GGAACAGGATTAAT AAAGACTAAGTTACCTGGAGTAAAGTCCGTGATTGCAAAAGTAAGCAAAGCAAAAGCAG ACCATTTTATTGAGCATGGGGACAAAATATACTTCGGTAA CCTC TTCCTTGAGGTACGATCTACTCCTGG CCATACTGCTGGCTGTGTGACTTATGTAACAGGTG AAGGCGATGAT CAACCTTCACCAAGAATGGCTTTTACTGGTGATGCCTTGCTTATACGTGCATGTGGAAGGACAGACTTTCAGGGAGGAAGTTCTGATGAGCTGTATGAGTCGGTG CA TTCGCAGATTTTCACATTGCCAAAGGATACCCTGCTTTATCCTGGCCATGACTACAAAGGTTTCACAGTAAGTACTGTTGAAGAGGAGGTTGCGTATAATGCTCGACTAACAAAGGATAAGGAAACATTCAAGAAAATTATGGACAACTTGAACTTGGCCTATCCAAAGATGATCGATGTAGCCGTGCCCGCGAATTTGCTCTGCGGTATTCAGGATCCTCCACCATCCAAGGTCTGAGCTGTTCCGGCTGAAGCTTTCAAGCTGTTGTGAACTCACGGTCAACTCGAGAAGCTCGCAGCTATGTTGTACATTAAATAATCTGTTGTTAATTTGTAAGGCACTACTTGGGAACATTTCCGCTTCATGAGATCAACGGTAATAATAATAAACAGAGGCTAGCTTGCCTCTT ] [+] EMBL CB627284 [ CGTCCTCACCCGCCGCCGCCGCGACCGCGAGCTAAACCACGGCACCGCCGGCGACCTCGTGGACCTCGCCTGTCGCCACATCATCGCTGCCGTCGCCTACTCGCCTCCCCTCCCCGACCCCGACCCGATCCGCTCCGCTCCCCATTTGTTTATTCCGGCGCGTGAGCTAATCACCGCGAGGTCCACCGCCGCCGATAACACCCAAGCCAAGCGCGGTCGCTTCCGCGTCTTGATTTCCTCCTCCTCCTCCTCCTCCCACTCGCGTGCGTACCTCCGCCTTATTATATAGCGCTGGCCTGGGCGGGGCGGAAGAGCCAAATGGTGGCGCTGCTTCGCTCGTGCCGCCGCCTGATCCCGCACCTGTCCGCCTGCGCCGCCGCCGCGCCGTCGTCGTCATCGTCGTGCGCTCCTCGGGCTAGGCCGATCTCGCGGGGACTGCGGCTGCTGCCGGTGGTGCTCGCAATGGCGGGGTACAGCAGCGGCTCCGCCGCGGA GGGGAGGAGGCTGCTGTTCAGGCAGCTGTTCGAGAAGGAGAGCTCCACCTACACCTACCTCCTCGCCGACGTCGGGGACCCCGAGAAACCCGCCGTGTTGATTGACCCTGTGGACAGAACAGTTGATAGAGATCTCAATCTTATCAAGGAGTTGGGCTTGAAGCTAGTCTATGCTATGAATACCCATGTGCATGC TGATCATGTCACT GGAACAGGATTAAT AAAGACTAAGTTACCTGGAGTAAAGTCCGTGATTGCAAAAGTAAGCAAAGCAAAAGCAG ACCATTTTATTGAGCATGGGGAC AAATATACTTCGG ] [+] EMBL C74518 [ CACGGCACCG CGGCGACCTCGTGGACCTCGCCTGTNGCCACATCATCGCTGCCGTCGCCTACTCGCCTCCCCTCCCCGACCCCGACCCGATCCGCTCCGCTCCCCATTTGTTTATTCCGGCGCGTGA CGAATCACCGCGAGGTCCACCGCCGCCGATAACACCCAAGCCAAGCGCGGTCG TTCCCCGTCTTGANTTCCTCCTCCT CTTCTCCTTCCANTCGCGTGCGT CCTTCGCCTTATTATATAGCGCTGG CTTGGCGGGGCGGAAAAG CAAATGGTGGCGCT ] [+] EMBL AK104104 [ GGTGGCGCTGCTTCGCTCGTGCCGCCGCCTGATCCCGCACCTGTCCGCCTGCGCCGCCGCCGCGCCGTCGTCGTCATCGTCGTGCGCTCCTCGGGCTAGGCCGATCTCGCGGGGACTGCGGCTGCTGCCGGTGGTGCTCGCAATGGCGGGGTACAGCAGCGGCTCCGCCGCGGA GGGGAGGAGGCTGCTGTTCAGGCAGCTGTTCGAGAAGGAGAGCTCCACCTACACCTACCTCCTCGCCGACGTCGGGGACCCCGAGAAACCCGCCGTGTTGATTGACCCTGTGGACAGAACAGTTGATAGAGATCTCAATCTTATCAAGGAGTTGGGCTTGAAGCTAGTCTATGCTATGAATACCCATGTGCATGC TGATCATGTCACT GGAACAGGATTAAT AAAGACTAAGTTACCTGGAGTAAAGTCCGTGATTGCAAAAGTAAGCAAAGCAAAAGCAG ACCATTTTATTGAGCATGGGGACAAAATATACTTCGGTAA CCTC TTCCTTGAGGTACGATCTACTCCTGG CCATACTGCTGGCTGTGTGACTTATGTAACAGGTG AAGGCGATGAT CAACCTTCACCAAGAATGGCTTTTACTGGTGATGCCTTGCTTATACGTGCATGTGGAAGGACAGACTTTCAGGGAGGAAGTTCTGATGAGCTGTATGAGTCGGTG CA TTCGCAGATTTTCACATTGCCAAAGGATACCCTGCTTTATCCTGGCCATGACTACAAAGGTTTCACAGTAAGTACTGTTGAAGAGGAGGTTGCGTATAATGCTCGACTAACAAAGGATAAGGAAACATTCAAGAAAATTATGGACAACTTGAACTTGGCCTATCCAAAGATGATCGATGTAGCCGTGCCCGCGAATTTGCTCTGCGGTATTCAGGATCCTCCACCATCCAAGGTCTGAGCTGTTCCGGCTGAAGCTTTCAAGCTGTTGTGAACTCACGGTCAACTCGAGAAGCTCGCAGCTATGTTGTACATTAAATAATCTGTTGTTAATTTGTAAGGCACTACTTGGGAACATTTCCGCTTCATGAGATCAACGGTAATAATAATAAACAGAGGCTAGCTTGCCTCTT ] [+] EMBL AK104749 [ CGCTGCTTCGCTCGTGCCGCCGCCTGATCCCGCACCTGTCCGCCTGCGCCGCCGCCGCGCCGTCGTCGTCATCGTCGTGCGCTCCTCGGGCTAGGCCGATCTCGCGGGGACTGCGGCTGCTGCCGGTGGTGCTCGCAATGGCGGGGTACAGCAGCGGCTCCGCCGCGGA GGGGAGGAGGCTGCTGTTCAGGCAGCTGTTCGAGAAGGAGAGCTCCACCTACACCTACCTCCTCGCCGACGTCGGGGACCCCGAGAAACCCGCCGTGTTGATTGACCCTGTGGACAGAACAGTTGATAGAGATCTCAATCTTATCAAGGAGTTGGGCTTGAAGCTAGTCTATGCTATGAATACCCATGTGCATGC TGATCATGTCACT GGAACAGGATTAAT AAAGACTAAGTTACCTGGAGTAAAGTCCGTGATTGCAAAAGTAAGCAAAGCAAAAGCAG ACCATTTTATTGAGCATGGGGACAAAATATACTTCGGTAA CCTC TTCCTTGAGGTACGATCTACTCCTGG CCATACTGCTGGCTGTGTGACTTATGTAACAGGTG AAGGCGATGAT CAACCTTCACCAAGAATGGCTTTTACTGGTGATGCCTTGCTTATACGTGCATGTGGAAGGACAGACTTTCAGGGAGGAAGTTCTGATGAGCTGTATGAGTCGGTG CA TTCGCAGATTTTCACATTGCCAAAGGATACCCTGCTTTATCCTGGCCATGACTACAAAGGTTTCACAGTAAGTACTGTTGAAGAGGAGGTTGCGTATAATGCTCGACTAACAAAGGATAAGGAAACATTCAAGAAAATTATGGACAACTTGAACTTGGCCTATCCAAAGATGATCGATGTAGCCGTGCCCGCGAATTTGCTCTGCGGTATTCAGGATCCTCCACCATCCAAGGTCTGAGCTGTTCCGGCTGAAGCTTTCAAGCTGTTGTGAACTCACGGTCAACTCGAGAAGCTCGCAGCTATGTTGTACATTAAATAATCTGTTGTTAATTTGTAAGGCACTACTTGGGAACATTTCCGCTTCATGAGATCAACGGTAATAATAATAAACAGAGGCTAGCTTGCCTCTT ] [+] EMBL AU161194 [ CGCTCGTGCCGCCGCCTGATCCCGCACCTGTCCGCCTGCGCCGCCGCCGCGCCGTCGTCGTCATCGTCGTGCGCTCCTCGGGCTAGGCCGATCTCGCGGGGACTGCGGCTGCTGCNGNTGGTGCTCGCAATGGCGGGGTACAGCAGCGGCTCCG NG GNANGGGGAGGAGGCTGCTGTTCAGGCAGCTGTTCGAGAAGGAGAGCTCCACCTACACCTACCTCCTCGCCGACGTCGGGGACCCCGAGAAACCCGCCGTGTTGATTGACCCTGTGGACAGAACAGTTGATAGAGATCTCAATCTTATC ] [+] EMBL AU062496 [ CGCTCGTGCCGCCGCCTGATCCCGCACCTGTCCGCCTGCGCCGCCGCCGCGCCGTCGTCGTCATCGTCGTNCGCTCCTCGGGCTAGGCCGATCTCGCGGGGACTGCGGCTGCTGCCGGTGGTGCTCGCAATGGCGGGGTACAGCAGCGGCTCCG CGGTGA GGGGAGGAGGCTGCTGTTCAGGCAGCTGTTCGAGAAGGAGAGCTCCACCTACACCTACCTCCTC ] [+] EMBL OSS2753A [ GCTCGTGCCGCCGCCTGATCCCGCACCTGTCCGCCTGCGCCGCCGCCGCGCCGTCGTCGTCATCGTCGTGCGCTCCTCGGGCTAGGCCGATCTCGCGGGGACTGCGGCTGCTGCCGGTGGTGCTCGCAATGGCGGGGTACAGCAGCGGCTCCGCCGGGNA GGGGAGGAGGCTGCTGTTCAGGCAGCTGTTCGAGAAGGAGAGCTCCACCTACACCTACCTCCTCGCCGACGTCGGGGACCCCGAGAAACCCGCCGTGTTGATTGACCCTGTGGACAGAACAGTTGATAGAGATCTCAATCTTATCAAGGAGTTGGGCTTGAAGCTAGTCTATGCTATGAATACCCATGTGCATGCTTGATCATGTCACTGGGAACAGGATTAATAAAAGACTAA ] [+] EMBL OSC111311 [ GCTCGTGCCGNCGCCTGATCCCGCACCTGTCCGCCTGCGCCGCCGCCGCGCCGTCGTCGTCATCGTCGTGCGCTCCTCGGGCTAGGCCGATCTCGCGGGGACTGCGGCTGCTGCCGGTGGTGCTCGCAATGGCGGGGTACAGCAGCGGCTCCGCCGGNAA GGGGAGGAGGCTGCTGTTCAGGCAGCTGTTCGAGAAGGAGAGCTCCACCTACAac ] [+] EMBL AU063249 [ CTCGTGCCGCCGCCTGATCCCGCACCTGTCCGCCTGCNCCGCCGCCGCGCCGTCGTCGTCATCGTCGTGCGCTCCTCGGGCTAGGCCGATCTCGCGGGGACTGCGGCTGCTGCCGGTGGTGCTCGCAATGGCGGGGTACAGCAGCGGCTCCG CGGANA GGGGAGGAGGCTGCTGTTCAGGCAGCTGTTCGAGAAGGAGAGCTCCACCTACACCTACCTCCTCGCCGACGTCGGGGACCCCGAGAAACCCGCCGTGTTGATTGACCCTGTGGACAGAACAGTTGATAGAGATCTCAATCTTATCAAGGAGTTGGGCTTGAAGCTAGTCTATGCTATGAATACCCATGTGCATGC TGATCATGTCACT ] [-] EMBL CB627285 [ CTGCCGGTGGTGCTCGCAATGGCGGGGTACAGCAGCGGCTCCGCCGCGGA GGGGAGGAGGCTGCTGTTCAGGCAGCTGTTCGAGAAGGAGAGCTCCACNTACACCTACCTCCTCGCCGACGTCGGGGACCCCGAGAAACCCGCCGTGTTGATTGACCCTGTGGACAGAACAGTTGATAGAGATCTCAATCTTATCAAGGAGTTGGGCTTGAAGCTAGTCTATGCTATGAATACCCATGTGCATGC TGATCATGTCACT GGAACAGGATTAAT AAAGACTAAGTTACCTGGAGTAAAGTCCGTGATTGCAAAAGTAAGCAAAGCAAAAGCAG ACCATTTTATTGAGCATGGGGACAAAATATACTTCGGTAA CCTC TTCCTTGAGGTACGATCTACTCCTGG CCATACTGCTGGCTGTGTGACTTATGTAACAGGTG AAGGCGATGAT CAACCTTCACCAAGAATGGCTTTTACTGGTGATGCCTTGCTTATACGTGCATGTGGAAGGACAGACTTTCAGGGAGGAAGTTCTGATGAGCTGTATGAGTCGGTG CA TTCGCAGATTTTCACATTGCCAAAGGATACCCTGCTTTATCCTGGCCATGACTACAAAGGTTTCACAGTAAGTACTGTTGAAGAGGAGGTTGCGTATAATGCTCGACTAACAAAGGATAAGGAAACATTCAAGAAAATTATGGACAACTTGAACTTGGCCTATCCAAAGATGATCGATGTAGCCGTGCCCGCGAATTTGCTCTGCGGTATTCAGGATCCTCCACCATCCAAGGTCTGAGCTGTTCCGGCTGAAGCTTTCAAGCTGTTGTGAAGTC ] [+] EMBL AU092204 [ aAAAGNCCGTGATTGCAAAAGTANGCAAAGCAAAAGCAG ACCATTTTATTGAGCATGGGGACAAAATATACTTCGGTAA CCTCTTTCCTTGAGGTACGATCTACTCCTGG CCATACTGCTGGCTGTGTGACTTATGTAACAGGTG AAGGCGATGAT CAACCTTCACCAAGAATGGCTTTTACTGGTGATGCCTTGCTTATACGTGCATGTGGAAGGACAGACTTTCAGGGAGGAAGTTCTGATGAGCTGTATGAGTCGGTG CA TTCGCAGATTTTCACATTGCCAAAGGATACCCTGCTTTATCCTGGCCATGACTACAAAGGTTTCACAGTAAGTACTGTTGAAGAGGAGGTTGCGTATAATGCTCGACTAACAAAGGATAAGGAAACATTCAAGAAAATTATGGACAACTTGAACTTGGCCTATCCAAAGATGATCGATGTAGCCGTGCCCGCGAATTTGCTCTGCGGTATTCAGGATCCTCCACCATCCAAGGTCTGAGCTGTTCCGGCTGAAGCTTTCAAGCTGTTGTGAACTCACGGTCAACTCGAGAAGCTCGCAGCTATGTTGTACATTAAATAATCTGTTGTTAATTTGTAAGGCACTACTTGGGAACATTTCCGCTTCATGAGATCAACGGTAATAATAATAAACAGAGGCTAGCTTGCCTCTTGTCTTGTGCTAAAAAAAA ] [+] EMBL AU094810 [ GCAAAGCAAAAGCAG ACCATTTTATTGAGCATGGGGACAAAATATACTTCGGTAA CCTC TTCCTTGAGGTACGATCTACTCCTGG CCATACTGCTGGCTGTGTGACTTATGTAACAGGTG AAGGCGATGAT CAACCTTCACCAAGAATGGCTTTTACTGGTGATGCCTTGCTTATACGTGCATGTGGAAGGACAGACTTTCAGGGAGGAAGTTCTGATGAGCTGTATGAGTCGGTG CA TTCGCAGATTTTCACATTGCCAAAGGATACCCTGCTTTATCCTGGCCATGACTACAAAGGTTTCACAGTAAGTACTGTTGAAGAGGAGGTTGCGTATAATGCTCGACTAACAAAGGATAAGGAAACATTCAAGAAAATTATGGACAACTTGAACTTGGCCTATCCAAAGATGATCGATGTAGCCGTGCCCGCGAATTTGCTCTGCGGTATTCAGGATCCTCCACCATCCAAGGTCTGAGCTGTTCCGGCTGAAGCTTTCAAGCTGTTGTGAACTCACGGTCAACTCGAGAAGCTCGCAGCTATGTTGTACATTAAATAATCTGTTGTTAATTTGTAAGGCACTACTTGGGAACATTTCCGCTTCATGAGATCAACGGTAATAATAATAAACAGAGGCTAGCTTGCCTCTTGTCTTGTGCTATACAAAGCTCTCAGCGAAAGTCGGTTGAAAAAA] [+] EMBL C97404 [ AAAGCAGNCCCATTTTATTGANCATGGGGAC NAATATACTTCGGTAACCCTC TTCCNTGAGGTACGATCTACTCCTGGCCCATACTGCTGGCTGTGTGACTTATGTAACAGGTGAAAGGCGATGATCCAACCTTCACCAAGAATGGCTTTTACTGGTGATNCCTTGCTTATACGTGCATGTGGAAGGACAGACTTTCAGGGAGGAAGTTCTGATGAGCTGTATGAGTCGGTG CA TTCGCAGATTTTCACATTGCCAAAGGATACCCTGCTTTATCCTGGCCATGACTACAAAGGTTTCACAGTAAGTACTGTTGAAGAGGAGGTTGCGTATAATGCTCGACTAACAAAGGATAAGGAAACATTCCAGAAAATTATGGACAACTTGAACTTGGCCTATCCAAAGATGATCGATGTAGCCGTGCCCGCGAATTTGCTCTGCGGTATTCAGGATCCTCCACCATCCAAGGTCTGAGCTGTTCCGGCTGAAGCTTTCAAGCTGTTGTGAACTCACGGTCAACTCGAGAAGCTCGCAGCTATGTTGTACATTAAATAATCTGTTGTTAATTTGTAAGGCACTACTTGGGAACATTTCCGCTTCATGAGATCAACGGTAATAATAATAAACAGAGGCTAGCTTGCCTCTTGTCTTGTGCTAAAAAAAAaaa ] [+] EMBL AU097185 [ TTCTGATGAGCTGTATGAGTCGGTGCCATTTCGCAGATTTTCACATTGCC AAGGATACCCTGC TTATCCTGGCCATGACTACAAA GTTTCACAGTAAGTACTGTTGAAGAGGAGGTTGCGTATAATGCTCGACTAACAAAGGATAAGGAAACATTCAAGAAAATTATGGACAACTTGAACTTGGCCTATCCAAAGATGATCGATGTAGCCGTGCCCGCGAATTTGCTCTGCGGTATTCAGGATCCTCCACCATCCAAGGTCTGAGCTGTTCCGGCTGAAGCTTTCAAGCTGTTGTGAACTCACGGTCAACTCGAGAAGCTCGCAGCTATGTTGTACATTAAATAATCTGTTGTTAATTTGTAAGGCACTACTTGGGAACATTTCCGCTTCATGAGATCAACGGTAATAATAATAAACAGAGGCTAGCTTGCCTCTTGTCTTGTGCTAAAA ] [+] EMBL CF324101 [ TTTATCCTGGCCATGACTACAAAGGTTTCACAGTAAGTACTGTTGAAGAGGAGGTTGCGTATAATGCTCGACTAACAATTTTTTTTGAAACATTCAAGAAAATTATGGACAACTTGAACTTGGCCTATCCAAAGATGATCGATGTAGCCGTGCCCGCGAATTTGCTCTGCGGTATTCAGGATCCTCCACCATCCAAGGTCTGAGCTGTTCCGGCTGAAGCTTTCAAGCTGTTGTGAACTCACGGTCAACTCGAGAAGCTCGCAGCTATGTTGTACATTAAATAATCTGTTGTTAATTTGTAAGGCACTACTTGGGAACATTTCCGCTTCATGAGATCAACGGTAATAATAATAAACAGAGGCTAGCTTGCCTC ] consensusID : consensus_15285#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 770 fasta sequence [ACATTGCCAAAGGATNCCCTGCTTTATCCTGGCCATGACTACAAAGGTTTCACAGTAAGTACTGTTGAAGNGGAGGTTGCGTATAATGCTCGACTAACAAAGGATAAGGAAACATTCAAGAAAATTATGGACAACTTGAACTTGGCCTATCCAAAGATGATCGATGTAGCCGTGCCCGCGAATTTGCTCTGCGGTATTCAGGATCCTCCACCATCCAAGGTCTGNGCTGTTCCGGCTGAAGCTTTCAAGCTGTTGTGAACTCACGGTCAACTCGAGAAGCTCGCAGCTATGTTGTACATTAAATAATCTGTTGTTAATTTGTAAGGCACTANTTGGGAACATTTCCGCTTCATGAGATCAACGGTAATAATAATAAACAGAGGCTAGCTTGCCTCTTGTCTTGTGCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTAAAAAAAAACCCCTGTCTTCCCTAACCAAACCAAATCTTAAAAAAAAAGGCAAAATCCCCGCCCCAAAAATAAAATCCCCCCAAAAAAAAGCCTAATAAAAATCAATGGCCCGTCTTTAAAAAACGTGGAAATGGAAAAAACCCTGGCTTAACCAAATAAAATCCCTTTGAAAAAAATCCCCTTTTCCCAACTGGGCAAAAAACAAAAAAGCCCCAACCCAACCCCCTTTCCAAAAATTGCCCAACCCAAAACTACCGGAATTTAAAGGTTAACACCAAAAAA] [+] EMBL AU102163 [ACATTGCCAAAGGATNCCCTGCTTTATCCTGGCCATGACTACAAAGGTTTCACAGTAAGTACTGTTGAAGNGGAGGTTGCGTATAATGCTCGACTAACAAAGGATAAGGAAACATTCAAGAAAATTATGGACAACTTGAACTTGGCCTATCCAAAGATGATCGATGTAGCCGTGCCCGCGAATTTGCTCTGCGGTATTCAGGATCCTCCACCATCCAAGGTCTGNGCTGTTCCGGCTGAAGCTTTCAAGCTGTTGTGAACTCACGGTCAACTCGAGAAGCTCGCAGCTATGTTGTACATTAAATAATCTGTTGTTAATTTGTAAGGCACTANTTGGGAACATTTCCGCTTCATGAGATCAACGGTAATAATAATAAACAGAGGCTAGCTTGCCTCTTGTCTTGTGCTAAAAAAAAAAAAAAAAAAAAAAAAAA ] [+] EMBL CF329331 [ GGAACATTTCCGCTTCATGAGATCAACGGTAATAATAATAAACAGAGGCTAGCTTGCCTCTTGTCTTGTGCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTAAAAAAAAACCCCTGTCTTCCCTAACCAAACCAAATCTTAAAAAAAAAGGCAAAATCCCCGCCCCAAAAATAAAATCCCCCCAAAAAAAAGCCTAATAAAAATCAATGGCCCGTCTTTAAAAAACGTGGAAATGGAAAAAACCCTGGCTTAACCAAATAAAATCCCTTTGAAAAAAATCCCCTTTTCCCAACTGGGCAAAAAACAAAAAAGCCCCAACCCAACCCCCTTTCCAAAAATTGCCCAACCCAAAACTACCGGAATTTAAAGGTTAACACCAAAAAA] [+] EMBL BM293896 [ ttctaaATCAGCGGTAATAATAATAAACAGAGGCTAGCTTGCCTCTTGTCTTGTGCTA ] consensusID : consensus_15285#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 697 fasta sequence [AACAGTTGATAGAGATCTCAATCTTATCAAGGAGTTGGGCTTGAAGCTAGTCTATGCTATGAATACCCATGTGCATGCTGATCATGTCACTGGAACAGGATTAATAAAGACTAAGTTACCTGGAGTAAAGTCCGTGATTGCAAAAGTAAGCAAAGCAAAAGCAGACCATTTTATTGAGCATGGGGACAAAATATACTTCGGTAACCTCTTCCTTGAGGTACGATCTACTCCTGGCCATACTGCTGGCTGTGTGACTTATGTAACAGGTGAAGGCGATGATCAACCTTCACCAAGAATGGCTTTTACTGGTGATGCCTTGCTTATACGTGCATGTGGAAGGACAGACTTTCAGGGAGGAAGTTCTGATGAGCTGTATGAGTCGGTGCATTCGCAGATTTTCACATTGCCAAAGGATACCCTGCTTTATCCTGGCCATGACTACAAAGGTTTCACAGTAAGTACTGTTGAAGAGGAGGTTGCGTATAATGCTCGACTAACAAAGGATAAGGTACATGCTACTTTGGCTAATTCTTTACACCCATCTAACTAATAAAAGCTATATTTTTTCTGATATTAATTTACTTGTTATGTTTATAGGAAACATTCAAGAAAATTATGGACAGTAAGTTTCAGAGTCTTTAACATGGGATATGTGCCTTTTCTTCTCGCATCAATTTATGAATATCCATTTTCATTA] [+] EMBL CF306240 [AACAGTTGATAGAGATCTCAATCTTATCAAGGAGTTGGGCTTGAAGCTAGTCTATGCTATGAATACCCATGTGCATGCTGATCATGTCACTGGAACAGGATTAATAAAGACTAAGTTACCTGGAGTAAAGTCCGTGATTGCAAAAGTAAGCAAAGCAAAAGCAGACCATTTTATTGAGCATGGGGACAAAATATACTTCGGTAACCTCTTCCTTGAGGTACGATCTACTCCTGGCCATACTGCTGGCTGTGTGACTTATGTAACAGGTGAAGGCGATGATCAACCTTCACCAAGAATGGCTTTTACTGGTGATGCCTTGCTTATACGTGCATGTGGAAGGACAGACTTTCAGGGAGGAAGTTCTGATGAGCTGTATGAGTCGGTGCATTCGCAGATTTTCACATTGCCAAAGGATACCCTGCTTTATCCTGGCCATGACTACAAAGGTTTCACAGTAAGTACTGTTGAAGAGGAGGTTGCGTATAATGCTCGACTAACAAAGGATAAGGTACATGCTACTTTGGCTAATTCTTTACACCCATCTAACTAATAAAAGCTATATTTTTTCTGATATTAATTTACTTGTTATGTTTATAGGAAACATTCAAGAAAATTATGGACAGTAAGTTTCAGAGTCTTTAACATGGGATATGTGCCTTTTCTTCTCGCATCAATTTATGAATATCCATTTTCATTA] consensusID : consensus_15285#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 236 fasta sequence [TGGGGTCCCCGGCCAGGGGGAAGAAAGGCGGTGACGCCGCCGCGGGGGCGGCCGCACAGAAGCACGTGGATCCCCGGGCAGCCGGAATCCGGCACGAGGCATCAGGTAGCGATCTCGTCCTCCGTCCTCACCCGCCGCCGCCGCGACCGCGAGCTAAACCACGGCACCGCCGGCGACCTCGTGGACCTCGCCTGTCGCCACATCATCGCTGCCGTCGCCTACTCGCCTCCCCTCCC] [+] EMBL CA753490 [TGGGGTCCCCGGCCAGGGGGAAGAAAGGCGGTGACGCCGCCGCGGGGGCGGCCGCACAGAAGCACGTGGATCCCCGGGCAGCCGGAATCCGGCACGAGGCATCAGGTAGCGATCTCGTCCTCCGTCCTCACCCGCCGCCGCCGCGACCGCGAGCTAAACCACGGCACCGCCGGCGACCTCGTGGACCTCGCCTGTCGCCACATCATCGCTGCCGTCGCCTACTCGCCTCCCCTCCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15285#0 GGAAACCGGCGAACTGCCAACATCCCCTGCCCCCATCTGGTAGCTATCTCGTCCTCCGTC 60 consensus_15285#2 ------------------------------------------------------------ consensus_15285#1 ------------------------------------------------------------ consensus_15285#3 ------------------------------------------------------------ consensus_15285#0 CTCACCCGCCGCCGCCGCGACCGCGAGCTAAACCACGGCACCGCCGGCGACCTCGTGGAC 120 consensus_15285#2 ------------------------------------------------------------ consensus_15285#1 ------------------------------------------------------------ consensus_15285#3 ------------------------------------------------------------ consensus_15285#0 CTCGCCTGTCGCCACATCATCGCTGCCGTCGCCTACTCGCCTCCCCTCCCCGACCCCGAC 180 consensus_15285#2 ------------------------------------------------------------ consensus_15285#1 ------------------------------------------------------------ consensus_15285#3 ------------------------------------------------------------ consensus_15285#0 CCGATCCGCTCCGCTCCCCATTTGTTTATTCCGGCGCGTGAGCTAATCACCGCGAGGTCC 240 consensus_15285#2 ------------------------------------------------------------ consensus_15285#1 ------------------------------------------------------------ consensus_15285#3 ------------------------------------------------------------ consensus_15285#0 ACCGCCGCCGATAACACCCAAGCCAAGCGCGGTCGCTTCCGCGTCTTGATTTCCTCCTCC 300 consensus_15285#2 ------------------------------------------------------------ consensus_15285#1 ------------------------------------------------------------ consensus_15285#3 ------------------------------------------------------------ consensus_15285#0 TCCTCCTCCTCCCACTCGCGTGCGTACCTCCGCCTTATTATATAGCGCTGGCCTGGGCGG 360 consensus_15285#2 ------------------------------------------------------------ consensus_15285#1 ------------------------------------------------------------ consensus_15285#3 ------------------------------------------------------------ consensus_15285#0 GGCGGAAGAGCCAAATGGTGGCGCTGCTTCGCTCGTGCCGCCGCCTGATCCCGCACCTGT 420 consensus_15285#2 ------------------------------------------------------------ consensus_15285#1 ------------------------------------------------------------ consensus_15285#3 ------------------------------------------------------------ consensus_15285#0 CCGCCTGCGCCGCCGCCGCGCCGTCGTCGTCATCGTCGTGCGCTCCTCGGGCTAGGCCGA 480 consensus_15285#2 ------------------------------------------------------------ consensus_15285#1 ------------------------------------------------------------ consensus_15285#3 ------------------------------------------------------------ consensus_15285#0 TCTCGCGGGGACTGCGGCTGCTGCCGGTGGTGCTCGCAATGGCGGGGTACAGCAGCGGCT 540 consensus_15285#2 ------------------------------------------------------------ consensus_15285#1 ------------------------------------------------------------ consensus_15285#3 ------------------------------------------------------------ consensus_15285#0 CCGCCGCGGAGGGGAGGAGGCTGCTGTTCAGGCAGCTGTTCGAGAAGGAGAGCTCCACCT 600 consensus_15285#2 ------------------------------------------------------------ consensus_15285#1 ------------------------------------------------------------ consensus_15285#3 ------------------------------------------------------------ consensus_15285#0 ACACCTACCTCCTCGCCGACGTCGGGGACCCCGAGAAACCCGCCGTGTTGATTGACCCTG 660 consensus_15285#2 ------------------------------------------------------------ consensus_15285#1 ------------------------------------------------------------ consensus_15285#3 ------------------------------------------------------------ consensus_15285#0 TGGACAGAACAGT-TGATAGAGATCTCAATCTTATCAAGGAGTTGGGCTTGAAGCTAGTC 719 consensus_15285#2 -------AACAGT-TGATAGAGATCTCAATCTTATCAAGGAGTTGGGCTTGAAGCTAGTC 52 consensus_15285#1 --------ACATTGCCAAAGGATNCCCTGCTTTATCCTGGCCATGACTACAAAGGT---- 48 consensus_15285#3 ------------------------------------------------------------ consensus_15285#0 TATGCTATGAATACCCATGTGCATGCTGATCATGTCACTGGAACAGGATTAATAAAGACT 779 consensus_15285#2 TATGCTATGAATACCCATGTGCATGCTGATCATGTCACTGGAACAGGATTAATAAAGACT 112 consensus_15285#1 TTCACAGTAAGTAC---TGTTGAAGNGGAGGTTGCGTATAATGCTCGACTAACAAAGGAT 105 consensus_15285#3 -----------------------------TGGGGTCCCCGGC-CAGGGGGAAGAAAGGCG 30 * * * ** **** consensus_15285#0 AAGTTACC-TGGAGTAAAGTCCGTGATTGC--AAAAGTAAGCAAAGCAAAAGCAGACCAT 836 consensus_15285#2 AAGTTACC-TGGAGTAAAGTCCGTGATTGC--AAAAGTAAGCAAAGCAAAAGCAGACCAT 169 consensus_15285#1 AAGGAAACATTCAAGAAAATTATGGACAACTTGAACTTGGCCTATCCAAAGATGATCGAT 165 consensus_15285#3 GTGACGCCGCCGCGGGGGCGGCCGCACAGAA-GCACGTGG---ATCCCCGGGCAGCCGG- 85 * * * * * * * * consensus_15285#0 TTTATTGAGCATGGGGACAAAATATAC----TTCGGTAACCTCTTCCTT--GAGGTACGA 890 consensus_15285#2 TTTATTGAGCATGGGGACAAAATATAC----TTCGGTAACCTCTTCCTT--GAGGTACGA 223 consensus_15285#1 GTAGCCGTGCCCGCGAATTTGCTCTGCGGTATTCAGGATCCTCCACCATCCAAGGTCTGN 225 consensus_15285#3 --AATCCGGCACGAGGCATCAGGTAGCGAT-CTCGTCCTCCGTCCTCACCCGCCGCCGCC 142 ** * * * ** ** * * consensus_15285#0 TCTACTCCTGGCCATACTGCTG-GCTGT--GTGA-CTTATG--TAACAGGTGAAGGCGAT 944 consensus_15285#2 TCTACTCCTGGCCATACTGCTG-GCTGT--GTGA-CTTATG--TAACAGGTGAAGGCGAT 277 consensus_15285#1 GCTGTTCCGGCTGAAGCTTTCAAGCTGTT-GTGAACTCACGGTCAACTCGAGAAGCTCGC 284 consensus_15285#3 GCGACCGCGAGCTAAACCACGGCACCGCCGGCGACCTCGTG--GACCTCG-----CCTGT 195 * * * * * * * ** ** * * * * consensus_15285#0 GATCAACCTTCACCAAGAATGGCTTTT-----ACTGGTGATGCCTTGCTT----ATACGT 995 consensus_15285#2 GATCAACCTTCACCAAGAATGGCTTTT-----ACTGGTGATGCCTTGCTT----ATACGT 328 consensus_15285#1 AGCTATGTTGTACATTAAATAATCTGTTGTTAATTTGTAAGGCACTANTTGGGAACATTT 344 consensus_15285#3 CGCCACATCATCGCTGCCGTCGCCT-------ACTCGCCTCCCCTCCC------------ 236 * * * * * * * consensus_15285#0 GCATGTGGAAGGACAGACTTT-----CAGGGAGGAAGTTCTGATGAGCTGTATGAGTCGG 1050 consensus_15285#2 GCATGTGGAAGGACAGACTTT-----CAGGGAGGAAGTTCTGATGAGCTGTATGAGTCGG 383 consensus_15285#1 CCGCTTCATGAGATCAACGGTAATAATAATAAACAGAGGCTAGCTTGCCTCTTGTCTTGT 404 consensus_15285#3 ------------------------------------------------------------ consensus_15285#0 TGCATTCGCAGATTTTCACATTGCCAAAGGATACCCTGCTTTATCCTGGCCATGACTACA 1110 consensus_15285#2 TGCATTCGCAGATTTTCACATTGCCAAAGGATACCCTGCTTTATCCTGGCCATGACTACA 443 consensus_15285#1 GCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 464 consensus_15285#3 ------------------------------------------------------------ consensus_15285#0 AAGGTTTCACAGTAAGTACTGTTGAAGAGGAGGTTGCGTATAATGCTCGACTAA--CAAA 1168 consensus_15285#2 AAGGTTTCACAGTAAGTACTGTTGAAGAGGAGGTTGCGTATAATGCTCGACTAA--CAAA 501 consensus_15285#1 AAAAAAAAAAAAAAAAAAAAATTAAAAAAAAACCCCTGTCT--TCCCTAACCAAACCAAA 522 consensus_15285#3 ------------------------------------------------------------ consensus_15285#0 GGATAAGGAAACATTCAAGAAAATTATGGACAACTTGAACTTGGCCTATCCAA----A-G 1223 consensus_15285#2 GGATAAGGTA-CATGC-----TACTTTGGCTAATTCT--TTACACCCATCTAA----CTA 549 consensus_15285#1 TCTTAAAAAAAAAGGCAAAATCCCCGCCCCAAAAATAAAATCCCCCCAAAAAAAAGCCTA 582 consensus_15285#3 ------------------------------------------------------------ consensus_15285#0 ATGATCGATG-TAGCCGTGCCCGCG--AATTTGCTC-TGCGGTATTCAGGATCCTCCACC 1279 consensus_15285#2 ATAAAAGCTA-TATTTTTTCTGATATTAATTTACT--TGTTATGTTTATAGGAAACATTC 606 consensus_15285#1 ATAAAAATCAATGGCCCGTCTTTAAAAAACGTGGAAATGGAAAAAACCCTGGCTTAACCA 642 consensus_15285#3 ------------------------------------------------------------ consensus_15285#0 ATCCAAGGTCTGAGCTGTTCCGGCTGAAGCTTTCAAGCTGTTGTGAAC----TCACGGTC 1335 consensus_15285#2 AAGAAAATTATGGACAGTAAGTTTCAGAGTCTTTAACATGGGATATGT----GCCTTTTC 662 consensus_15285#1 AATAAAATCCCTTTGAAAAAAATCCCCTTTTCCCAACTGGGCAAAAAACAAAAAAGCCCC 702 consensus_15285#3 ------------------------------------------------------------ consensus_15285#0 AACTCG-AGAAGCTCGCAGCTATGT-TGTACATTAAATAATCTGTTGTTAATTTGTAAGG 1393 consensus_15285#2 TTCTCGCATCAATTTATGAATATCCATTTTCATTA------------------------- 697 consensus_15285#1 AACCCAACCCCCTTTCCAAAAATTGCCCAACCCAAAACTACCGGAATTTAAAGGTTAACA 762 consensus_15285#3 ------------------------------------------------------------ consensus_15285#0 CACTACTTGGGAACATTTCCGCTTCATGAGATCAACGGTAATAATAATAAACAGAGGCTA 1453 consensus_15285#2 ------------------------------------------------------------ consensus_15285#1 CCAAAAAA---------------------------------------------------- 770 consensus_15285#3 ------------------------------------------------------------ consensus_15285#0 GCTTGCCTCTTGTCTTGTGCTAAAAAAAACTCTCAGCGAAAGTCGGTTGAAAAAA 1508 consensus_15285#2 ------------------------------------------------------- consensus_15285#1 ------------------------------------------------------- consensus_15285#3 ------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||