These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15324#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 687 fasta sequence [TCTTTTTAGGTTTTTTAAATTAAAAGTGGCAGTCTTACACGATCTGATCATTACTT-GCCCCAAACTCAAGGCAAAAGTTTACAAGGTAGTAGTACATGATTGATGATACATAAGTTTTGCTCCATAAAAAAAGGACCGATTAGAACGCATGTGATTTTCACGAGGAAAACCACTTGATTCGTATGTACAGAAAAACGGTGGAAACCCCTGTAGACTGACCCGGCAAACAAGCATCATCAGTGCATGGATACTGGACC-AAAAACACCATAAGAAATTAAAGAGAACGGAGCAAGCGAGCAATCAGCCAGCTAGTACTAGTACATATATATTGTACAGCCGTGATCTGGTCGGAGATGAGACGATGACCCGCCGGCGGCGGCCGGCCGGCGCGGCGGAGGCCCATCGATCGATCACTTGGGCCCCCAAAGCAGCAGGTGCATCACCTTGTCCGCCTTGCCGCCGCCGTCCGCCGCGCGCCGCCCCGCCGTTGCCGCCGGCGTGGCCGCGGCCGCGGCCGCGCGGGGTACCCGCAGCTGCTGGCCGGCGTCGCGCGCCAGCGCACGCAGCGTCGCCGGGAGCTCCCACCTGCTCTCGCGCCCGCTGCTCATGGCGAATCAACCACCGCTTTCTCCTTGGCCCTTCTTGCTATGCTATCTAGCTCGTGCTGCTCATCCTCACCTCGTGCCG] [+] EMBL CB681494 [TCTTTTTAGGTTTTTTAAATTAAAAGTGGCAGTCTTACACGACCTGATCATTACTT GCCCCAAACTCAAGGCAAAAGTTTACAAGGTAGTAGTACATGATTGATGATACATAAGTTTTGCTCCATAAAAAAAGGACCGATTAGAACGCATGTGATTTTCACGAGGAAAACCACTTGATTCGTATGTACAGAAAAACGGTGGAAACCCCTGTAGACTGACCCGGCAAACAAGCATCATCAGTGCATGGATACTGGACC AAAAACACCATAAGAAATTAAAGAGAACGGAGCAAGCGAGCAATCAGCCAGCTAGTACTAGTACATATATATTGTACAGCCGTGATCTGGTCGGAGATGAAACGATGACCCGCCGGCGGCGGCCGGCCGGCGCGGCGGAGGCCCATCGATCGATCACTTGGGCCCCCAAAGCAGCAGGTGCATCACCTTGTCCGCCTTGCCGCCGCCGTCCGCCGCGCGCCGCCCCGCCGTTGCCGCCGGCGTGGCCGCGGCCGCGGCCGCGCGGGGTACCCGCAGCTGCTGGCCGGCGTCGCGCGCCAGCGCACGCAGCGTCGCCGGGAGCTCCCACCTGCTCTCGCGCCCGCTGCTCATGGCGAATCAACCACCGCTTTCTCCTTGGCCCTTCTTGCTATGCTATCTAGCTCGTGCTGCTCATCCTCACCTCGTGCCG] [+] EMBL CB680893 [ AAGTGGCAGTCTTACACGATCTGATCATTACTT GCCCCAAACTCAAGGCAAAAGTTTACAAGGTAGTAGTACATGATTGATGATACATAAGTTTTGCTCCATAAAAAAAGGACCGATTAGAACGCATGTGATTTTCACGAGGAAAACCACTTGATTCGTATGTACAGAAAAACGGTGGAAACCCCTGTAGACTGACCCGGCAAACAAGCATCATCAGTGCATGGATACTGGACC AAAAACACCATAAGAAATTAAAGAGAACGGAGCAAGCGAGCAATCAGCCAGCTAGTACTAGTACATATATATTGTACAGCCGTGATCTGGTCGGAGATGAGACGATGACCCGCCGGCGGCGGCCGGCCGGCGCGGCGGAGGCCCATCGATCGATCACTTGGGCCCCCAAAGCAGCAGGTGCATCACCTTGTCCGCCTTGCCGCCGCCGTCCGCCGCGCGCCGCCCCGCCGTTGCCGCCGGCGTGGCCGCGGCCGCGGCCGCGCGGGGTACCCGCAGCTGCTGGCCGGCGTCGCGCGCCAGCGCACGCAGCGTCGCCGGGAGCTCCCACCTGCTCTCGCGCCCGCTGCTCATG ] [-] EMBL CB681493 [ TGGCAGTCTTACACGATCTGATCATTACTT GCCCCAAACTCAAGGCAAAAGTTTACAAGGTAGTAGTACATGATTGATGATACATAAGTTTTGCTCCATAAAAAAAGGACCGATTAGAACGCATGTGATTTTCACGAGGAAAACCACTTGATTCGTATGTACAGAAAAACGGTGGAAACCCCTGTAGACTGACCCGGCAAACAAGCATCATCAGTGCATGGATACTGGACC AAAAACACCATAAGAAATTAAAGAGAACGGAGCAAGCGAGCAATCAGCCAGCTAGTACTAGTACATATATATTGTACAGCCGTGATCTGGTCGGAGATGAGACGATGACCCGCCGGCGGCGGCCGGCCGGCGCGGCGGAGGCCCATCGATCGATCACTTGGGCCCCCAAAGCAGCAGGTGCATCACCTTGTCCGCCTTGCCGCCGCCGTCCGCCGCGCGCCGCCCCGCCGTTGCCGCCGGCGTGGCCGCGGCCGCGGCCGCGCGGGGTACCCGCAGCTGCTGGCCGGCGTCGCGCGCCAGCGCACGCAGCGTCGCCGGGAGCTCCCACCTGCTCTCGCGCCCGCTGCTCATGGCGAATCAACCACCGCTTTCTCCTTGGCCCTTCTTGCTATGCTATCTAGAAAGGGCTGC ] [-] EMBL AK067196 [ GTCTTACACGATCTGATCATTACTT GCCCCAAACTCAAGGCAAAAGTTTACAAGGTAGTAGTACATGATTGATGATACATAAGTTTTGCTCCATAAAAAAAGGACCGATTAGAACGCATGTGATTTTCACGAGGAAAACCACTTGATTCGTATGTACAGAAAAACGGTGGAAACCCCTGTAGACTGACCCGGCAAACAAGCATCATCAGTGCATGGATACTGGACC AAAAACACCATAAGAAATTAAAGAGAACGGAGCAAGCGAGCAATCAGCCAGCTAGTACTAGTACATATATATTGTACAGCCGTGATCTGGTCGGAGATGAGACGATGACCCGCCGGCGGCGGCCGGCCGGCGCGGCGGAGGCCCATCGATCGATCACTTGGGCCCCCAAAGCAGCAGGTGCATCACCTTGTCCGCCTTGCCGCCGCCGTCCGCCGCGCGCCGCCCCGCCGTTGCCGCCGGCGTGGCCGCGGCCGCGGCCGCGCGGGGTACCCGCAGCTGCTGGCCGGCGTCGCGCGCCAGCGCACGCAGCGTCGCCGGGAGCTCCCACCTGCTCTCGCGCCCGCTGCTCATGGCGAATCAACCACCGCTTTCTCCTTGGCCCTTCTTGCTATGCTATCTAGCTCGTGCTGCTCATCCT ] [-] EMBL CB682830 [ GTCTTACACGATCTGATCATTACTT GCCCCAAACTCAAGGCAAAAGTTTACAAGGTAGTAGTACATGATTGATGATACATAAGTTTTGCTCCATAAAAAAAGGACCGATTAGAACGCATGTGATTTTCACGAGGAAAACCACTTGATTCGTATGTACAGAAAAACGGTGGAAACCCCTGTAGACTGACCCGGCAAACAAGCATCATCAGTGCATGGATACTGGACC AAAAACACCATAAGAAATTAAAGAGAACGGAGCAAGCGAGCAATCAGCCAGCTAGTACTAGTACATATATATTGTACAGCCGTGATCTGGTCGGAGATGAGACGATGACCCGCCGGCGGCGGCCGGCCGGCGCGGCGGAGGCCCATCGATCGATCACTTGGGCCCCCAAAGCAGCAGGTGCATCACCTTGTCCGCCTTGCCGCCGCCGTCCGCCGCGCGCCGCCCCGCCGTTGCCGCCGGCGTGGCCGCGGCCGCGGCCGCGCGGGGTACCCGCAGCTGCTGGCCGGCGTCGCGCGCCAGCGCACGCAGCGTCGCCGGGAGCTCCCACCTGCTCTCGCGCCCGCTGCTCATGGCGAATCAACCACCGCTTTCTCCTTGGCCCTTCTTGCTA ] [-] EMBL CB680892 [ GTCTTACACGATCTGATCATTACTT GCCCCAAACTCAAGGCAAAAGTTTACAAGGTAGTAGTACATGATTGATGATACATAAGTTTTGCTCCATAAAAAAAGGACCGATTAGAACGCATGTGATTTTCACGAGGAAAACCACTTGATTCGTATGTACAGAAAAACGGTGGAAACCCCTGTAGACTGACCCGGCAAACAAGCATCATCAGTGCATGGATACTGGACC AAAAACACCATAAGCAATTAAAGAGAACGGAGCAAGCGAGCAATCAGCCAGCTAGTACTAGTACATATATATTGTACAGCCGTGATCTGGTCGGAGATGAGACGATGACCCGCCGGCGGCGGCCGGCCGGCGCGGCGGAGGCCCATCGATCGATCACTTGGGCCCCCAAAGCAGCAGGTGCATCACCTTGTCCGCCTTGCCGCCGCCGTCCGCCGCGCGCCGCCCCGCCGTTGCCGCCGGCGTGGCCGCGGCCGCGGCCGCGCGGGGTACCCGCAGCTGCTGGCCGGCGTCGCGCGCCAGCGCACGCAGCGTCGCCGGGAGCTCCCACCTGCTCAGGGGCCCGC ] [-] EMBL CF326374 [ TCTTACACGATCTGATCATTACTT GCCCCAAACTCAAGGCAAAAGTTTACAAGGTAGTAGTACATGATTGATGATACATAAGTTTTGCTCCATAAAAAAAGGACCGATTAGAACGCATGTGATTTTCACGAGGAAAACCACTTGATTCGTATGTACAGAAAAACGGTGGAAACCCCTGTAGACTGACCCGGCAAACAAGCATCATCAGTGCATGGATACTGGACC AAAAACACCATAAGAAATTAAAGAGAACGGAGCAAGCGAGCAATCAGCCAGCTAGTACTAGTACATATATATTGTACAGCCGTGATCTGGTCGGAGATGAGACGATGACCCGCCGGCGGCGGCCGGCCGGCGCGGCGGAGGCCCATCGATCGATCACTTGGGCCCCCAAAGCAGCAGGTGCATCACCTTGTCCGCCTTGCCGCCGCCGTCCGCCGCGCGCCGCCCCGCCGTT ] [-] EMBL CA753065 [ caTACTTGGCCACAAACTCAAGGCAAAAGTTTACAAGGTAGTAGTACATGATTGATGATACATAAGTTTTGCTCCATAAAAAAAGGACCGATTAGACCGCATGTGATTGTCACGAGGAAAACCACTTGATTCGTATGTACAGAAAAACGGTGGAAACCCCTGTAGACTGACCCGGCAAACAAGCATCATCAGTGCATGGATACTGGACC AAATACACCATAAGAAATTAAAGAGAACGGAGCAAGCGAGCAATCAGCCAGCTAGTACTAGTACATATATATTGTACAGCCGTGATCTGGTCGGAGATGAGACGATGACCCGCCGGCGGCGGCCGGCCGGCGCGGCGGAGGCCCATCGATCGATCACTTGGGCCCCCAAAGCAGCAGGTGCATCACCTTGTCCGCCTTGCCGCCGCCGTCCGCCGCGCGCCGCCCCGCCGTTGCCGCCGGCGTGGCCGCGGCCGCGGCCGCGCGGGGTACCCGCAGCTGCTGGCCGGCGTCGCGCGCCAGCGCACGCAGCGTCGCCGGGAGCTCCCACCTGCTCTCGCGCCCGCTGCTCATGGCGAATCAACCACCGCTTTCTCCTTGGCCCTTCTTGCTATGCTATCTAGCTCGTG ] [+] EMBL CD645586 [ ATGATACATAAGTTTTGCTCCAT AAAAAAGGACCGATTAGAACGCATGTGACTTTCACGAGGAAAACCACTTGATTCGTATGTACAGAAAAACGGTGGAAACCCCTGTAGACTGACCCGGCAAACAAGCATCATCAGTGCATGGATACTGGACC AAAAACACCATAAGAAATTAAAGAGAACGGAGCAAGCGAGCAATCAGCCAGCTAGTACTAGTACA ] [-] EMBL BE229391 [ TGCCCCATAAAAAAAGGACCGATTAGAACGCATMTGATTTTCACGAGGAAAACCACTTGATTCGTWTGTACAGAAAAACGGTGGAAACCCCTGTAGACTGACCCGGCAAACAAGCATCATCAGTGCATGGATARTGGACCDAAAAACACCATAAGAAATTAAAGAGAACGGAGCAAGCGAGCAATCAGCCAGCTAGTACTAGTACATATATATTGTACAGCCMTGATCTGGTCGGAGATGAGACGATGACCCSC GCGGCGGCC GSCGGCGCGGCGGAGGCCCATCGATCGATCACTTGGGCCCCCAAAGCAGAAGGTGCATCACCTTGTCCGCCTTGCCGCCGCCGTCCGCCGCGCGCCGCCCCGCCGTTGCCGCCGCCGTGGC CGGCCGCGGCGGCGCGGGGTACCCGCAGCTGCTGGCCGGCGTCGCGCGCAAGCGCACGCAGCGTCGCC GGAGCTCCCACCTTGTCTCGCGCCCGCTGCTC ] consensusID : consensus_15324#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 646 fasta sequence [TTTTTTTTTTTTTTTTTTTGGCAGTCTTACACGATCTGATCATTACTTGCCCCAAACTCAAGGCAAAAGTTTACAAGGTAGTAGTACATGATTGATGATACATAAGTTTTGCTCCATAAAAAAAGGACCGATTAGAACGCATGTGATTTTCACGAGGAAAACCACTTGATTCGTATGTACAGAAAAACGGTGGAAACCCCTGTAGACTGACCCGGCAAACAAGCATCATCAGTGCATGGATACTGGA-CCAAAAACACCATAAGAAATTAAAGAGAACGGAGCAAGCGAGCAATCAGCCAGCTAGTANTAGNAAANANANATTGTACAGCCGTGATCTGGTCGGAGATGAGACGATGACCCGCCGGCGGCGGCCGGCCGGCGCGGCGGAGGCCCATCGATCGATCACTTGGGCCCCCAAAGCAGCAGGTGCATCACNTTGTCCGCTTTGCCGCCGCNGTCCGCCGCGCGCCGCCCCGCCGTTGCCGCCGGCGTGGCCGCGGCCGCGGCCGCGCGGGGNACCCGCAGTTGNTGGCCGGCGTCGCGCGCCAGCGCACGCAGCGTCGCCGGGAGTTCCCACGTGTTCTCGCGCCNGCTGNTCATGGCGAATCAACCACCGANATCTCTTTGGCCATTCNGGGGGGCAATN] [-] EMBL CA753989 [TTTTTTTTTTTTTTTTTTTGGCAGTCTTACACGATCTGATCATTACTTGCCCCAAACTCAAGGCAAAAGTTTACAAGGTAGTAGTACATGATTGATGATACATAAGTTTTGCTCCATAAAAAAAGGACCGATTAGAACGCATGTGATTTTCACGAGGAAAACCACTTGATTCGTATGTACAGAAAAACGGTGGAAACCCCTGTAGACTGACCCGGCAAACAAGCATCATCAGTGCATGGATACTGGA CCAAAAACACCATAAGAAATTAAAGAGAACGGA ] [-] EMBL AA754596 [ ACTTGATTNGTATGTACAGAAANACGGTGGAAACCCNTGTAGACTGACCCGGCAAACAAGCATCATCAGTGCATGGATATTGGACCCAAAAACACCATAAGAAATTAAAGAGAACGGAGCAAGCGAGCAATCAGCCAGCTAGTANTAGNAAANANANATTGTACAGCCGTGATCTGGTCGGAGATGAGACGATGACCCGCCGGCGGCGGCCGGCCGGCGCGGCGGAGGCCCATCGATCGATCACTTGGGCCCCCAAAGCAGCAGGTGCATCACNTTGTCCGCTTTGCCGCCGCNGTCCGCCGCGCGCCGCCCCGCCGTTGCCGCCGGCGTGGCCGCGGCCGCGGCCGCGCGGGGNACCCGCAGTTGNTGGCCGGCGTCGCGCGCCAGCGCACGCAGCGTCGCCGGGAGTTCCCACGTGTTCTCGCGCCNGCTGNTCATGGCGAATCAACCACCGANATCTCTTTGGCCATTCNGGGGGGCAATN] consensusID : consensus_15324#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 514 fasta sequence [CAAAATTAAAAGTGGCAGTCTTACACGATCTGATCATTACTTGCCCCAAACTCAAGGCAAAAGTTTACAAGGTAGTAGTACATGATTGATGATACATAAGTTTTGCTCCATAAAAAAAGGACCGATTAGAACGCATGTGATTTTCACGAGGAAAACCACTTGATTCGTATGTACAGAAAAACGGTGGAAACCCCTGTAGACTGACCCGGCAAACAAGCATCATCAGTGCATGGATACTGGACCAAAAACACCATAAGCCATAGGCAAAAACACCATAAGAAATTAAAGAGAACGGAGCAAGCGAGCAATCAGCCAGCTAGTACTAGTACATATATATTGTACAGCCGTGATCTGGTCGGAGATGAGACGATGACCCGCCGGCGCGGCGGAGGCCCATCGATCGATCACTTGGGCCCCCAAAGCAGCAGGTGCATCACCTTGTCCGCCTTGCCGCCGCCGTCCGCCGC-GCGCCGCCCCGCCGTTGCCGCCGGCGTGGCCGCGGCCCCAAGTTCCC] [-] EMBL BI306468 [CAAAATTAAAAGTGGCAGTCTTACACGATCTGATCATTACTTGCCCCAAACTCAAGGCAAAAGTTTACAAGGTAGTAGTACATGATTGATGATACATAAGTTTTGCTCCATAAAAAAAGGACCGATTAGAACGCATGTGATTTTCACGAGGAAAACCACTTGATTCGTATGTACAGAAAAACGGTGGAAACCCCTGTAGACTGACCCGGCAAACAAGCATCATCAGTGCATGGATACTGGACCAAAAACACCATAAGCCATAGGCAAAAACACCATAAGAAATTAAAGAGAACGGAGCAAGCGAGCAATCAGCCAGCTAGTACTAGTACATATATATTGTACAGCCGTGATCTGGTCGGAGATGAGACGATGACCCGCCGGCGCGGCGGAGGCCCATCGATCGATCACTTGGGCCCCCAAAGCAGCAGGTGCATCACCTTGTCCGCCTTGCCGCCGCCGTCCGCCGC GCGCCGCCCCGCCGTTGCCGCCGGCGTG ] [-] EMBL BI305957 [ AAGTGGCAGTCTTACACGATCTGATCATTACTTGCCCCAAACTCAAGGCAAAAGTTTACAAGGTAGTAGTACATGATTGATGATACATAAGTTTTGCTCCATAAAAAAAGGACCGATTAGAACGCATGTGATTTTCACGAGGAAAACCACTTGATTCGTATGTACAGAAAAACGGTGGAAACCCCTGTAGACTGACCCGGCAAACAAGCATCATCAGTGCATGGATACTGGACCAAAAACACCATAAGCCATAGGCAAAAACACCATAAGAAATTAAAGAGAACGGAGCAAGCGAGCAATCAGCCAGCTAGTACTAGTACATATATATTGTACAGCCGTGATCTGGTCGGAGATGAGACGATGACCCGCCGGCGCGGCGGAGGCCCATCGATCGATCACTTGGGCCCCCAAAGCAGCAGGTGCATCACCTTGTCCGCCTTGCCGCCGCCGTCCGCCGC GCGCCGCCCCGCCGTTGCCGCCGGCGTGGCCGCGGCCCCAAG ] [-] EMBL BI305597 [ AAGTGGCAGTCTTACACGATCTGATCATTACTTGCCCCAAACTCAAGGCAAAAGTTTACAAGGTAGTAGTACATGATTGATGATACATAAGTTTTGCTCCATAAAAAAAGGACCGATTAGAACGCATGTGATTTTCACGAGGAAAACCACTTGATTCGTATGTACAGAAAAACGGTGGAAACCCCTGTAGACTGACCCGGCAAACAAGCATCATCAGTGCATGGATACTGGACCAAAAACACCATAAGCCATAGGCAAAAACACCATAAGAAATTAAAGAGAACGGAGCAAGCGAGCAATCAGCCAGCTAGTACTAGTACATATATATTGTACAGCCGTGATCTGGTCGGAGATGAGACGATGACCCGCCGGCGCGGCGGAGGCCCATCGATCGATCACTTGGGCCCCCAAAGCAGCAGGTGCATCACCTTGTCCGCCTTGCCGCCGCCGTCCGCCGC GCGCCGCCCCGCCGTTGCCGCCGGCGTG ] [-] EMBL CB965524 [ CTTACACGATCTGATCATTACTTGCCCCAAACTCAAGGCAAAAGTTTACAAGGTAGTAGTACATGATTGATGATACATAAGTTTTGCTCCATAAAAAAAGGACCGATTAGAACGCATGTGATTTTCACGAGGAAAACCACTTGATTCGTATGTACAGAAAAACGGTGGAAACCCCTGTAGACTGACCCGGCAAACAAGCATCATCAGTGCATGGATACTGGACCAAAAACACCATAAGCCATAGGCAAAAACACCATAAGAAATTAAAGAGAACGGAGCAAGCGAGCAATCAGCCAGCTAGTACTAGTACATATATATTGTACAGCCGTGATCTGGTCGGAGATGAGACGATGACCCGCCGGCGCGGCGGAGGCCCATCGATCGATCACTTGGGCCCCCAAAGCAGCAGGTGCATCACCTTGTCCGCCTTGCCGCCGCCGTCCGCCGC GCGCCGCCCCGCCGTTGCCGCCGGCGT GCCGCGGCCCAGTATTCCC] [-] EMBL BU673719 [ CTTACACGATCTGATCATTACTTGCCCCAAACTCAAGGCTAAAGTTTACAAGGTAGTAGTACATGATTGATGATACATAAGTTTTGCTCCATTGTTAAAGGACCGATTAGTACGCATGTGATTTTCACGAGGAAAACCACTTGATTCGTATGTACAGAAAAACGGTGGAAACCCCTGTAGACTGACCCGGCAAACAAGCATCATCAGTGCATGGATACTGGACCAAAAACACCATAAGCCATAGGCAAAAACACCATAAGAAATTAAAGAGAACGGAGCAAGCGAGCAATCAGCCAGCTAGTACTAGTACATATATATTGTACAGCCGTGATCTGGTCGGAGATGAGACGATGACCCGCCGGCGCGGCGGAGGCCCATCGATCGATCACTTGGGCCCCCAAAGCAGCAGGTGCATCACC TGTCCGCCTTGCCGCCGCCGTCCGCCGCGGCGCCGCCCCGCCGTTGC ] [-] EMBL BI305435 [ CCAAACTCAAGGCAAAAGTTTACAAGGTAGTAGTACATGATTGATGATACATAAGTTTTGCTCCATAAAAAAAGGACCGATTAGAACGCATGTGATTTTCACGAGGAAAACCACTTGATTCGTATGTACAGAAAAACGGTGGAAACCCCTGTAGACTGACCCGGCAAACAAGCATCATCAGTGCATGGATACTGGACCAAAAACACCATAAGCCATAGGCAAAAACACCATAAGAAATTAAAGAGAACGGAGCAAGCGAGCAATCAGCCAGCTAGTACTAGTACATATATATTGTACAGCCGTGATCTGGTCGGAGATGAGACGATGACCCGCCGGCGCGGCGGAGGCCCATCGATCGATCACTTGGGCCCCCAAAGCAGCAGGTGCATCACCTTGTCCGCCTTGCCGCCGCCGTCCGCCGC GCGCCGCCCCGCCGTTGCCGCC ] consensusID : consensus_15324#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 475 fasta sequence [TTTTTTTTACCCAAAATTAAAAGTGGCAGTCTTACACGATNTGATCATTACTTGCCCCAAANTCAAGGCAAAAGTTTACAAGGTAGTAGTACATGATTGATGATACATAAGTTTTGCTCCATAAAAAAAGGACNGATTAGNACGCATGTGATTTTCANGAGGAAAACCACTTGATTCGTATGTACAGAAAAACGGTGGAAACCCTTGTAGATGACCCGGCAAACAAGCATCATCAGTGCATGGATANTGGACCAAAAACACCATAAGAAATTAAAGAGAACGGAGCAAGCGAGCATCAGCCAGNTAGTACTAGTACATATATATTGTACAGCCGTGATCTGGTCGGAGATGAGANGATGACCCGCCGGCGGCGGCCGGCCGGCGCGGCGGAGGCCCATNGATCGATCACTTGGGCCCCCAAAGCAGCAGGTGNATCACCTTGTCCGCCTTGCCGCCGCTCGTGCNGAATCNTGCN] [-] EMBL BE228969 [TTTTTTTTACCCAAAATTAAAAGTGGCAGTCTTACACGATNTGATCATTACTTGCCCCAAANTCAAGGCAAAAGTTTACAAGGTAGTAGTACATGATTGATGATACATAAGTTTTGCTCCATAAAAAAAGGACNGATTAGNACGCATGTGATTTTCANGAGGAAAACCACTTGATTCGTATGTACAGAAAAACGGTGGAAACCCTTGTAGATGACCCGGCAAACAAGCATCATCAGTGCATGGATANTGGACCAAAAACACCATAAGAAATTAAAGAGAACGGAGCAAGCGAGCATCAGCCAGNTAGTACTAGTACATATATATTGTACAGCCGTGATCTGGTCGGAGATGAGANGATGACCCGCCGGCGGCGGCCGGCCGGCGCGGCGGAGGCCCATNGATCGATCACTTGGGCCCCCAAAGCAGCAGGTGNATCACCTTGTCCGCCTTGCCGCCGCTCGTGCNGAATCNTGCN] consensusID : consensus_15324#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 389 fasta sequence [CAGCTAGTAGTAGTAGATATATATTGTAGAGCWCGTGATTTGGTCGGAGATGAGATCGATGATCTCGCGGCGGCGGCCGGCTGGCGCGGAGGCKCATNGATCGATCACTTGGGGCGSCAAAGCAGAAGGTGTATCAACDTTGTCCGCTTGTCGCCGCCGTGCGCCGCGCGCCGCCCCGCCGTTGCCGCCGCCGTGGCCGGCCGCGGCCGCGCGGGGTACCCCGCAGCTGCTGGGCCGGCGTGCGCGCGCACAGKGCACGCAGCGTCGCCGGGAGCTCCCACCTGTTCTCGCGCCCGCTGCTCATGGCGAATCAACCACNGCTTTCTCCTTGGCCCTTCTTGCTATGCTATCTAGCTCGTGCTGCTTCTCTGCCGAATTGGACGAGCTCG] [-] EMBL BE229555 [CAGCTAGTAGTAGTAGATATATATTGTAGAGCWCGTGATTTGGTCGGAGATGAGATCGATGATCTCGCGGCGGCGGCCGGCTGGCGCGGAGGCKCATNGATCGATCACTTGGGGCGSCAAAGCAGAAGGTGTATCAACDTTGTCCGCTTGTCGCCGCCGTGCGCCGCGCGCCGCCCCGCCGTTGCCGCCGCCGTGGCCGGCCGCGGCCGCGCGGGGTACCCCGCAGCTGCTGGGCCGGCGTGCGCGCGCACAGKGCACGCAGCGTCGCCGGGAGCTCCCACCTGTTCTCGCGCCCGCTGCTCATGGCGAATCAACCACNGCTTTCTCCTTGGCCCTTCTTGCTATGCTATCTAGCTCGTGCTGCTTCTCTGCCGAATTGGACGAGCTCG] consensusID : consensus_15324#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 240 fasta sequence [CAAATGCAAGCCAAGCTGAGTGACTGAGTACATGATGATGATTGGTGACATGCCGTGATGCTGGGTGCAGGAGATGAGACGATGGACCCAGCCAGGCGCGGCGGAGGCCCATGCAGATGCGATCACTTGGGCCCCCAAAGCAGCAGGTGCATCACCTTGTCCGCCTTGCCACCACCGTCCACCGCGCACCGCCCCGCCGTTGCCGCCGGCGTGCCGCGGCCCAAGCTTATTCCCTGTTGA] [-] EMBL CB965898 [CAAATGCAAGCCAAGCTGAGTGACTGAGTACATGATGATGATTGGTGACATGCCGTGATGCTGGGTGCAGGAGATGAGACGATGGACCCAGCCAGGCGCGGCGGAGGCCCATGCAGATGCGATCACTTGGGCCCCCAAAGCAGCAGGTGCATCACCTTGTCCGCCTTGCCACCACCGTCCACCGCGCACCGCCCCGCCGTTGCCGCCGGCGTGCCGCGGCCCAAGCTTATTCCCTGTTGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15324#2 --------------CAAAATTAAAAGTGGCAGTCTTACACGATCTGATCATTACTTGCCC 46 consensus_15324#3 ---TTTTTTTTACCCAAAATTAAAAGTGGCAGTCTTACACGATNTGATCATTACTTGCCC 57 consensus_15324#1 --------TTTTTTTTTTTTTTTTTTTGGCAGTCTTACACGATCTGATCATTACTTGCCC 52 consensus_15324#5 ------------------------------------------------------------ consensus_15324#0 TCTTTTTAGGTTTTTTAAATTAAAAGTGGCAGTCTTACACGATCTGATCATTACTTGCCC 60 consensus_15324#4 ------------------------------------------------------------ consensus_15324#2 CAAACTCAAGGCAAAAGTTTACAAGGTAGTAGTACATGATTGATGATACATAAGTTTTGC 106 consensus_15324#3 CAAANTCAAGGCAAAAGTTTACAAGGTAGTAGTACATGATTGATGATACATAAGTTTTGC 117 consensus_15324#1 CAAACTCAAGGCAAAAGTTTACAAGGTAGTAGTACATGATTGATGATACATAAGTTTTGC 112 consensus_15324#5 ------------------------------------------------------------ consensus_15324#0 CAAACTCAAGGCAAAAGTTTACAAGGTAGTAGTACATGATTGATGATACATAAGTTTTGC 120 consensus_15324#4 ------------------------------------------------------------ consensus_15324#2 TCCATAAAAAAAGGACCGATTAGAACGCATGTGATTTTCACGAGGAAAACCACTTGATTC 166 consensus_15324#3 TCCATAAAAAAAGGACNGATTAGNACGCATGTGATTTTCANGAGGAAAACCACTTGATTC 177 consensus_15324#1 TCCATAAAAAAAGGACCGATTAGAACGCATGTGATTTTCACGAGGAAAACCACTTGATTC 172 consensus_15324#5 ------------------------------------------------------------ consensus_15324#0 TCCATAAAAAAAGGACCGATTAGAACGCATGTGATTTTCACGAGGAAAACCACTTGATTC 180 consensus_15324#4 ------------------------------------------------------------ consensus_15324#2 GTATGTACAGAAAAACGGTGGAAACCCCTGTAGACTGACCCGGCAAACAAGCATCATCAG 226 consensus_15324#3 GTATGTACAGAAAAACGGTGGAAACCCTTGTAGA-TGACCCGGCAAACAAGCATCATCAG 236 consensus_15324#1 GTATGTACAGAAAAACGGTGGAAACCCCTGTAGACTGACCCGGCAAACAAGCATCATCAG 232 consensus_15324#5 ------------------------------------------------------------ consensus_15324#0 GTATGTACAGAAAAACGGTGGAAACCCCTGTAGACTGACCCGGCAAACAAGCATCATCAG 240 consensus_15324#4 ------------------------------------------------------------ consensus_15324#2 TGCATGGATACTGGACCAAAAACACCATAAGCCATAGGCAAAAACACCATAAGAAATTAA 286 consensus_15324#3 TGCATGGATANTGGACCAAAAACACCATAAG----------------------AAATTAA 274 consensus_15324#1 TGCATGGATACTGGACCAAAAACACCATAAG----------------------AAATTAA 270 consensus_15324#5 ------------------------------------------------------------ consensus_15324#0 TGCATGGATACTGGACCAAAAACACCATAAG----------------------AAATTAA 278 consensus_15324#4 ------------------------------------------------------------ consensus_15324#2 AGAGAACGGAGCAAGC-GAGCAATCAGCCAGCTAGTACTAGTACAT-ATATATTGTACAG 344 consensus_15324#3 AGAGAACGGAGCAAGC-GAGCA-TCAGCCAGNTAGTACTAGTACAT-ATATATTGTACAG 331 consensus_15324#1 AGAGAACGGAGCAAGC-GAGCAATCAGCCAGCTAGTANTAGNAAAN-ANANATTGTACAG 328 consensus_15324#5 CAAATGCAAGCCAAGCTGAGTGACTGAGTACATGATGATGATTGGTGACATGCCGTGATG 60 consensus_15324#0 AGAGAACGGAGCAAGC-GAGCAATCAGCCAGCTAGTACTAGTACAT-ATATATTGTACAG 336 consensus_15324#4 ----------------------------CAGCTAGTAGTAGTAGAT-ATATATTGTAGAG 31 * * * * * * ** * consensus_15324#2 C-CGTGATCTGGTCGGAGATGAGA-CGATGACCCGCCGGCG--------------CGGCG 388 consensus_15324#3 C-CGTGATCTGGTCGGAGATGAGA-NGATGACCCGCCGGCGGCGGCCGGCCGGCGCGGCG 389 consensus_15324#1 C-CGTGATCTGGTCGGAGATGAGA-CGATGACCCGCCGGCGGCGGCCGGCCGGCGCGGCG 386 consensus_15324#5 C-TGGGT----GCAGGAGATGAGA-CGATGGAC--CCAGCCA---------GGCGCGGCG 103 consensus_15324#0 C-CGTGATCTGGTCGGAGATGAGA-CGATGACCCGCCGGCGGCGGCCGGCCGGCGCGGCG 394 consensus_15324#4 CWCGTGATTTGGTCGGAGATGAGATCGATGATCTCGCGGCGGCGGCCGGCTGGC---GCG 88 * * * * ********** **** * * ** *** consensus_15324#2 GAGGCCCATC--GAT-CGATCACTTGGGCCCCCAAAGCAGCAGGTGCATCACCTTGTCCG 445 consensus_15324#3 GAGGCCCATN--GAT-CGATCACTTGGGCCCCCAAAGCAGCAGGTGNATCACCTTGTCCG 446 consensus_15324#1 GAGGCCCATC--GAT-CGATCACTTGGGCCCCCAAAGCAGCAGGTGCATCACNTTGTCCG 443 consensus_15324#5 GAGGCCCATGCAGATGCGATCACTTGGGCCCCCAAAGCAGCAGGTGCATCACCTTGTCCG 163 consensus_15324#0 GAGGCCCATC--GAT-CGATCACTTGGGCCCCCAAAGCAGCAGGTGCATCACCTTGTCCG 451 consensus_15324#4 GAGGCKCATN--GAT-CGATCACTTGGGGCGSCAAAGCAGAAGGTGTATCAACDTTGTCC 145 ***** *** *** ************ * ******** ***** **** * * consensus_15324#2 CCTTGCCGCCGCCGTCCGCCGCGCGCCGCCCCGCCGTTGCCGCCGGCGTGG----CCGCG 501 consensus_15324#3 CCTTGCCGCCGCT-CGTGCNGAATCNTGCN------------------------------ 475 consensus_15324#1 CTTTGCCGCCGCNGTCCGCCGCGCGCCGCCCCGCCGTTGCCGCCGGCGTGG----CCGCG 499 consensus_15324#5 CCTTGCCACCACCGTCCACCGCGCACCGCCCCGCCGTTGCCGCCGGCGTG-----CCGCG 218 consensus_15324#0 CCTTGCCGCCGCCGTCCGCCGCGCGCCGCCCCGCCGTTGCCGCCGGCGTGG----CCGCG 507 consensus_15324#4 GCTTGTCGCCGCCGTGCGCCGCGCGCCGCCCCGCCGTTGCCGCCGCCGTGGCCGGCCGCG 205 *** * ** * * * ** consensus_15324#2 GCCCCAAGTTCCC----------------------------------------------- 514 consensus_15324#3 ------------------------------------------------------------ consensus_15324#1 GCCGCGGCCGCGCGGGGNACCCGCAGTTGNTGGCCGGCGTCGCGCGCCAGCGCACGCAGC 559 consensus_15324#5 GCCCAAGCTTATTCCCTGTTGA-------------------------------------- 240 consensus_15324#0 GCCGCGGCCGCGCGGGGTACCCGCAGCTGCTGGCCGGCGTCGCGCGCCAGCGCACGCAGC 567 consensus_15324#4 GCCGCGCGGGGTACCCCGCAGCTGCTGGGCCGGCGTGCGCGCGCACAGKGCACGCAGCGT 265 consensus_15324#2 ------------------------------------------------------------ consensus_15324#3 ------------------------------------------------------------ consensus_15324#1 GTCGCCGGGAGTTCCCACGTGTTCTCGCGCCNGCTGNTCATGGCGAATCAACCACCGANA 619 consensus_15324#5 ------------------------------------------------------------ consensus_15324#0 GTCGCCGGGAGCTCCCACCTGCTCTCGCGCCCGCTGCTCATGGCGAATCAACCACCGCTT 627 consensus_15324#4 CGCCGGGAGCTCCCACCTGTTCTCGCGCCCGCTGCTCATGGCGAATCAACCACNGCTTTC 325 consensus_15324#2 ------------------------------------------------------------ consensus_15324#3 ------------------------------------------------------------ consensus_15324#1 TCTCTTTGGCCATTCNGGGGGGCAATN--------------------------------- 646 consensus_15324#5 ------------------------------------------------------------ consensus_15324#0 TCTCCTTGGCCCTTCTTGCTATGCTATCTAGCTCGTGCTGCTCATCCTCACCTCGTGCCG 687 consensus_15324#4 TCCTTGGCCCTTCTTGCTATGCTATCTAGCTCGTGCTGCTTCTCTGCCGAATTGGACGAG 385 consensus_15324#2 ---- consensus_15324#3 ---- consensus_15324#1 ---- consensus_15324#5 ---- consensus_15324#0 ---- consensus_15324#4 CTCG 389 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||