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Oryza sativa
cluster # 15324 cluster # 15324       Sequences # 21       consensus # 6


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_15324#0 length = 687 sequences # 10  
consensus_15324#1 length = 646 sequences # 2  
consensus_15324#2 length = 514 sequences # 6  
consensus_15324#3 length = 475 sequences # 1  
consensus_15324#4 length = 389 sequences # 1  
consensus_15324#5 length = 240 sequences # 1  

consensusID : consensus_15324#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 687
fasta sequence
                              [TCTTTTTAGGTTTTTTAAATTAAAAGTGGCAGTCTTACACGATCTGATCATTACTT-GCCCCAAACTCAAGGCAAAAGTTTACAAGGTAGTAGTACATGATTGATGATACATAAGTTTTGCTCCATAAAAAAAGGACCGATTAGAACGCATGTGATTTTCACGAGGAAAACCACTTGATTCGTATGTACAGAAAAACGGTGGAAACCCCTGTAGACTGACCCGGCAAACAAGCATCATCAGTGCATGGATACTGGACC-AAAAACACCATAAGAAATTAAAGAGAACGGAGCAAGCGAGCAATCAGCCAGCTAGTACTAGTACATATATATTGTACAGCCGTGATCTGGTCGGAGATGAGACGATGACCCGCCGGCGGCGGCCGGCCGGCGCGGCGGAGGCCCATCGATCGATCACTTGGGCCCCCAAAGCAGCAGGTGCATCACCTTGTCCGCCTTGCCGCCGCCGTCCGCCGCGCGCCGCCCCGCCGTTGCCGCCGGCGTGGCCGCGGCCGCGGCCGCGCGGGGTACCCGCAGCTGCTGGCCGGCGTCGCGCGCCAGCGCACGCAGCGTCGCCGGGAGCTCCCACCTGCTCTCGCGCCCGCTGCTCATGGCGAATCAACCACCGCTTTCTCCTTGGCCCTTCTTGCTATGCTATCTAGCTCGTGCTGCTCATCCTCACCTCGTGCCG]

[+] EMBL CB681494             [TCTTTTTAGGTTTTTTAAATTAAAAGTGGCAGTCTTACACGACCTGATCATTACTT GCCCCAAACTCAAGGCAAAAGTTTACAAGGTAGTAGTACATGATTGATGATACATAAGTTTTGCTCCATAAAAAAAGGACCGATTAGAACGCATGTGATTTTCACGAGGAAAACCACTTGATTCGTATGTACAGAAAAACGGTGGAAACCCCTGTAGACTGACCCGGCAAACAAGCATCATCAGTGCATGGATACTGGACC AAAAACACCATAAGAAATTAAAGAGAACGGAGCAAGCGAGCAATCAGCCAGCTAGTACTAGTACATATATATTGTACAGCCGTGATCTGGTCGGAGATGAAACGATGACCCGCCGGCGGCGGCCGGCCGGCGCGGCGGAGGCCCATCGATCGATCACTTGGGCCCCCAAAGCAGCAGGTGCATCACCTTGTCCGCCTTGCCGCCGCCGTCCGCCGCGCGCCGCCCCGCCGTTGCCGCCGGCGTGGCCGCGGCCGCGGCCGCGCGGGGTACCCGCAGCTGCTGGCCGGCGTCGCGCGCCAGCGCACGCAGCGTCGCCGGGAGCTCCCACCTGCTCTCGCGCCCGCTGCTCATGGCGAATCAACCACCGCTTTCTCCTTGGCCCTTCTTGCTATGCTATCTAGCTCGTGCTGCTCATCCTCACCTCGTGCCG]
[+] EMBL CB680893             [                       AAGTGGCAGTCTTACACGATCTGATCATTACTT GCCCCAAACTCAAGGCAAAAGTTTACAAGGTAGTAGTACATGATTGATGATACATAAGTTTTGCTCCATAAAAAAAGGACCGATTAGAACGCATGTGATTTTCACGAGGAAAACCACTTGATTCGTATGTACAGAAAAACGGTGGAAACCCCTGTAGACTGACCCGGCAAACAAGCATCATCAGTGCATGGATACTGGACC AAAAACACCATAAGAAATTAAAGAGAACGGAGCAAGCGAGCAATCAGCCAGCTAGTACTAGTACATATATATTGTACAGCCGTGATCTGGTCGGAGATGAGACGATGACCCGCCGGCGGCGGCCGGCCGGCGCGGCGGAGGCCCATCGATCGATCACTTGGGCCCCCAAAGCAGCAGGTGCATCACCTTGTCCGCCTTGCCGCCGCCGTCCGCCGCGCGCCGCCCCGCCGTTGCCGCCGGCGTGGCCGCGGCCGCGGCCGCGCGGGGTACCCGCAGCTGCTGGCCGGCGTCGCGCGCCAGCGCACGCAGCGTCGCCGGGAGCTCCCACCTGCTCTCGCGCCCGCTGCTCATG                                                                              ]
[-] EMBL CB681493             [                          TGGCAGTCTTACACGATCTGATCATTACTT GCCCCAAACTCAAGGCAAAAGTTTACAAGGTAGTAGTACATGATTGATGATACATAAGTTTTGCTCCATAAAAAAAGGACCGATTAGAACGCATGTGATTTTCACGAGGAAAACCACTTGATTCGTATGTACAGAAAAACGGTGGAAACCCCTGTAGACTGACCCGGCAAACAAGCATCATCAGTGCATGGATACTGGACC AAAAACACCATAAGAAATTAAAGAGAACGGAGCAAGCGAGCAATCAGCCAGCTAGTACTAGTACATATATATTGTACAGCCGTGATCTGGTCGGAGATGAGACGATGACCCGCCGGCGGCGGCCGGCCGGCGCGGCGGAGGCCCATCGATCGATCACTTGGGCCCCCAAAGCAGCAGGTGCATCACCTTGTCCGCCTTGCCGCCGCCGTCCGCCGCGCGCCGCCCCGCCGTTGCCGCCGGCGTGGCCGCGGCCGCGGCCGCGCGGGGTACCCGCAGCTGCTGGCCGGCGTCGCGCGCCAGCGCACGCAGCGTCGCCGGGAGCTCCCACCTGCTCTCGCGCCCGCTGCTCATGGCGAATCAACCACCGCTTTCTCCTTGGCCCTTCTTGCTATGCTATCTAGAAAGGGCTGC                   ]
[-] EMBL AK067196             [                               GTCTTACACGATCTGATCATTACTT GCCCCAAACTCAAGGCAAAAGTTTACAAGGTAGTAGTACATGATTGATGATACATAAGTTTTGCTCCATAAAAAAAGGACCGATTAGAACGCATGTGATTTTCACGAGGAAAACCACTTGATTCGTATGTACAGAAAAACGGTGGAAACCCCTGTAGACTGACCCGGCAAACAAGCATCATCAGTGCATGGATACTGGACC AAAAACACCATAAGAAATTAAAGAGAACGGAGCAAGCGAGCAATCAGCCAGCTAGTACTAGTACATATATATTGTACAGCCGTGATCTGGTCGGAGATGAGACGATGACCCGCCGGCGGCGGCCGGCCGGCGCGGCGGAGGCCCATCGATCGATCACTTGGGCCCCCAAAGCAGCAGGTGCATCACCTTGTCCGCCTTGCCGCCGCCGTCCGCCGCGCGCCGCCCCGCCGTTGCCGCCGGCGTGGCCGCGGCCGCGGCCGCGCGGGGTACCCGCAGCTGCTGGCCGGCGTCGCGCGCCAGCGCACGCAGCGTCGCCGGGAGCTCCCACCTGCTCTCGCGCCCGCTGCTCATGGCGAATCAACCACCGCTTTCTCCTTGGCCCTTCTTGCTATGCTATCTAGCTCGTGCTGCTCATCCT            ]
[-] EMBL CB682830             [                               GTCTTACACGATCTGATCATTACTT GCCCCAAACTCAAGGCAAAAGTTTACAAGGTAGTAGTACATGATTGATGATACATAAGTTTTGCTCCATAAAAAAAGGACCGATTAGAACGCATGTGATTTTCACGAGGAAAACCACTTGATTCGTATGTACAGAAAAACGGTGGAAACCCCTGTAGACTGACCCGGCAAACAAGCATCATCAGTGCATGGATACTGGACC AAAAACACCATAAGAAATTAAAGAGAACGGAGCAAGCGAGCAATCAGCCAGCTAGTACTAGTACATATATATTGTACAGCCGTGATCTGGTCGGAGATGAGACGATGACCCGCCGGCGGCGGCCGGCCGGCGCGGCGGAGGCCCATCGATCGATCACTTGGGCCCCCAAAGCAGCAGGTGCATCACCTTGTCCGCCTTGCCGCCGCCGTCCGCCGCGCGCCGCCCCGCCGTTGCCGCCGGCGTGGCCGCGGCCGCGGCCGCGCGGGGTACCCGCAGCTGCTGGCCGGCGTCGCGCGCCAGCGCACGCAGCGTCGCCGGGAGCTCCCACCTGCTCTCGCGCCCGCTGCTCATGGCGAATCAACCACCGCTTTCTCCTTGGCCCTTCTTGCTA                                       ]
[-] EMBL CB680892             [                               GTCTTACACGATCTGATCATTACTT GCCCCAAACTCAAGGCAAAAGTTTACAAGGTAGTAGTACATGATTGATGATACATAAGTTTTGCTCCATAAAAAAAGGACCGATTAGAACGCATGTGATTTTCACGAGGAAAACCACTTGATTCGTATGTACAGAAAAACGGTGGAAACCCCTGTAGACTGACCCGGCAAACAAGCATCATCAGTGCATGGATACTGGACC AAAAACACCATAAGCAATTAAAGAGAACGGAGCAAGCGAGCAATCAGCCAGCTAGTACTAGTACATATATATTGTACAGCCGTGATCTGGTCGGAGATGAGACGATGACCCGCCGGCGGCGGCCGGCCGGCGCGGCGGAGGCCCATCGATCGATCACTTGGGCCCCCAAAGCAGCAGGTGCATCACCTTGTCCGCCTTGCCGCCGCCGTCCGCCGCGCGCCGCCCCGCCGTTGCCGCCGGCGTGGCCGCGGCCGCGGCCGCGCGGGGTACCCGCAGCTGCTGGCCGGCGTCGCGCGCCAGCGCACGCAGCGTCGCCGGGAGCTCCCACCTGCTCAGGGGCCCGC                                                                                      ]
[-] EMBL CF326374             [                                TCTTACACGATCTGATCATTACTT GCCCCAAACTCAAGGCAAAAGTTTACAAGGTAGTAGTACATGATTGATGATACATAAGTTTTGCTCCATAAAAAAAGGACCGATTAGAACGCATGTGATTTTCACGAGGAAAACCACTTGATTCGTATGTACAGAAAAACGGTGGAAACCCCTGTAGACTGACCCGGCAAACAAGCATCATCAGTGCATGGATACTGGACC AAAAACACCATAAGAAATTAAAGAGAACGGAGCAAGCGAGCAATCAGCCAGCTAGTACTAGTACATATATATTGTACAGCCGTGATCTGGTCGGAGATGAGACGATGACCCGCCGGCGGCGGCCGGCCGGCGCGGCGGAGGCCCATCGATCGATCACTTGGGCCCCCAAAGCAGCAGGTGCATCACCTTGTCCGCCTTGCCGCCGCCGTCCGCCGCGCGCCGCCCCGCCGTT                                                                                                                                                                                                      ]
[-] EMBL CA753065             [                                                 caTACTTGGCCACAAACTCAAGGCAAAAGTTTACAAGGTAGTAGTACATGATTGATGATACATAAGTTTTGCTCCATAAAAAAAGGACCGATTAGACCGCATGTGATTGTCACGAGGAAAACCACTTGATTCGTATGTACAGAAAAACGGTGGAAACCCCTGTAGACTGACCCGGCAAACAAGCATCATCAGTGCATGGATACTGGACC AAATACACCATAAGAAATTAAAGAGAACGGAGCAAGCGAGCAATCAGCCAGCTAGTACTAGTACATATATATTGTACAGCCGTGATCTGGTCGGAGATGAGACGATGACCCGCCGGCGGCGGCCGGCCGGCGCGGCGGAGGCCCATCGATCGATCACTTGGGCCCCCAAAGCAGCAGGTGCATCACCTTGTCCGCCTTGCCGCCGCCGTCCGCCGCGCGCCGCCCCGCCGTTGCCGCCGGCGTGGCCGCGGCCGCGGCCGCGCGGGGTACCCGCAGCTGCTGGCCGGCGTCGCGCGCCAGCGCACGCAGCGTCGCCGGGAGCTCCCACCTGCTCTCGCGCCCGCTGCTCATGGCGAATCAACCACCGCTTTCTCCTTGGCCCTTCTTGCTATGCTATCTAGCTCGTG                       ]
[+] EMBL CD645586             [                                                                                                       ATGATACATAAGTTTTGCTCCAT AAAAAAGGACCGATTAGAACGCATGTGACTTTCACGAGGAAAACCACTTGATTCGTATGTACAGAAAAACGGTGGAAACCCCTGTAGACTGACCCGGCAAACAAGCATCATCAGTGCATGGATACTGGACC AAAAACACCATAAGAAATTAAAGAGAACGGAGCAAGCGAGCAATCAGCCAGCTAGTACTAGTACA                                                                                                                                                                                                                                                                                                                                                                             ]
[-] EMBL BE229391             [                                                                                                                      TGCCCCATAAAAAAAGGACCGATTAGAACGCATMTGATTTTCACGAGGAAAACCACTTGATTCGTWTGTACAGAAAAACGGTGGAAACCCCTGTAGACTGACCCGGCAAACAAGCATCATCAGTGCATGGATARTGGACCDAAAAACACCATAAGAAATTAAAGAGAACGGAGCAAGCGAGCAATCAGCCAGCTAGTACTAGTACATATATATTGTACAGCCMTGATCTGGTCGGAGATGAGACGATGACCCSC  GCGGCGGCC GSCGGCGCGGCGGAGGCCCATCGATCGATCACTTGGGCCCCCAAAGCAGAAGGTGCATCACCTTGTCCGCCTTGCCGCCGCCGTCCGCCGCGCGCCGCCCCGCCGTTGCCGCCGCCGTGGC  CGGCCGCGGCGGCGCGGGGTACCCGCAGCTGCTGGCCGGCGTCGCGCGCAAGCGCACGCAGCGTCGCC GGAGCTCCCACCTTGTCTCGCGCCCGCTGCTC                                                                                 ]


>consensus_15324#0 TCTTTTTAGGTTTTTTAAATTAAAAGTGGCAGTCTTACACGATCTGATCATTACTTGCCC CAAACTCAAGGCAAAAGTTTACAAGGTAGTAGTACATGATTGATGATACATAAGTTTTGC TCCATAAAAAAAGGACCGATTAGAACGCATGTGATTTTCACGAGGAAAACCACTTGATTC GTATGTACAGAAAAACGGTGGAAACCCCTGTAGACTGACCCGGCAAACAAGCATCATCAG TGCATGGATACTGGACCAAAAACACCATAAGAAATTAAAGAGAACGGAGCAAGCGAGCAA TCAGCCAGCTAGTACTAGTACATATATATTGTACAGCCGTGATCTGGTCGGAGATGAGAC GATGACCCGCCGGCGGCGGCCGGCCGGCGCGGCGGAGGCCCATCGATCGATCACTTGGGC CCCCAAAGCAGCAGGTGCATCACCTTGTCCGCCTTGCCGCCGCCGTCCGCCGCGCGCCGC CCCGCCGTTGCCGCCGGCGTGGCCGCGGCCGCGGCCGCGCGGGGTACCCGCAGCTGCTGG CCGGCGTCGCGCGCCAGCGCACGCAGCGTCGCCGGGAGCTCCCACCTGCTCTCGCGCCCG CTGCTCATGGCGAATCAACCACCGCTTTCTCCTTGGCCCTTCTTGCTATGCTATCTAGCT CGTGCTGCTCATCCTCACCTCGTGCCG



consensusID : consensus_15324#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 646
fasta sequence
                              [TTTTTTTTTTTTTTTTTTTGGCAGTCTTACACGATCTGATCATTACTTGCCCCAAACTCAAGGCAAAAGTTTACAAGGTAGTAGTACATGATTGATGATACATAAGTTTTGCTCCATAAAAAAAGGACCGATTAGAACGCATGTGATTTTCACGAGGAAAACCACTTGATTCGTATGTACAGAAAAACGGTGGAAACCCCTGTAGACTGACCCGGCAAACAAGCATCATCAGTGCATGGATACTGGA-CCAAAAACACCATAAGAAATTAAAGAGAACGGAGCAAGCGAGCAATCAGCCAGCTAGTANTAGNAAANANANATTGTACAGCCGTGATCTGGTCGGAGATGAGACGATGACCCGCCGGCGGCGGCCGGCCGGCGCGGCGGAGGCCCATCGATCGATCACTTGGGCCCCCAAAGCAGCAGGTGCATCACNTTGTCCGCTTTGCCGCCGCNGTCCGCCGCGCGCCGCCCCGCCGTTGCCGCCGGCGTGGCCGCGGCCGCGGCCGCGCGGGGNACCCGCAGTTGNTGGCCGGCGTCGCGCGCCAGCGCACGCAGCGTCGCCGGGAGTTCCCACGTGTTCTCGCGCCNGCTGNTCATGGCGAATCAACCACCGANATCTCTTTGGCCATTCNGGGGGGCAATN]

[-] EMBL CA753989             [TTTTTTTTTTTTTTTTTTTGGCAGTCTTACACGATCTGATCATTACTTGCCCCAAACTCAAGGCAAAAGTTTACAAGGTAGTAGTACATGATTGATGATACATAAGTTTTGCTCCATAAAAAAAGGACCGATTAGAACGCATGTGATTTTCACGAGGAAAACCACTTGATTCGTATGTACAGAAAAACGGTGGAAACCCCTGTAGACTGACCCGGCAAACAAGCATCATCAGTGCATGGATACTGGA CCAAAAACACCATAAGAAATTAAAGAGAACGGA                                                                                                                                                                                                                                                                                                                                                                              ]
[-] EMBL AA754596             [                                                                                                                                                                   ACTTGATTNGTATGTACAGAAANACGGTGGAAACCCNTGTAGACTGACCCGGCAAACAAGCATCATCAGTGCATGGATATTGGACCCAAAAACACCATAAGAAATTAAAGAGAACGGAGCAAGCGAGCAATCAGCCAGCTAGTANTAGNAAANANANATTGTACAGCCGTGATCTGGTCGGAGATGAGACGATGACCCGCCGGCGGCGGCCGGCCGGCGCGGCGGAGGCCCATCGATCGATCACTTGGGCCCCCAAAGCAGCAGGTGCATCACNTTGTCCGCTTTGCCGCCGCNGTCCGCCGCGCGCCGCCCCGCCGTTGCCGCCGGCGTGGCCGCGGCCGCGGCCGCGCGGGGNACCCGCAGTTGNTGGCCGGCGTCGCGCGCCAGCGCACGCAGCGTCGCCGGGAGTTCCCACGTGTTCTCGCGCCNGCTGNTCATGGCGAATCAACCACCGANATCTCTTTGGCCATTCNGGGGGGCAATN]


>consensus_15324#1 TTTTTTTTTTTTTTTTTTTGGCAGTCTTACACGATCTGATCATTACTTGCCCCAAACTCA AGGCAAAAGTTTACAAGGTAGTAGTACATGATTGATGATACATAAGTTTTGCTCCATAAA AAAAGGACCGATTAGAACGCATGTGATTTTCACGAGGAAAACCACTTGATTCGTATGTAC AGAAAAACGGTGGAAACCCCTGTAGACTGACCCGGCAAACAAGCATCATCAGTGCATGGA TACTGGACCAAAAACACCATAAGAAATTAAAGAGAACGGAGCAAGCGAGCAATCAGCCAG CTAGTANTAGNAAANANANATTGTACAGCCGTGATCTGGTCGGAGATGAGACGATGACCC GCCGGCGGCGGCCGGCCGGCGCGGCGGAGGCCCATCGATCGATCACTTGGGCCCCCAAAG CAGCAGGTGCATCACNTTGTCCGCTTTGCCGCCGCNGTCCGCCGCGCGCCGCCCCGCCGT TGCCGCCGGCGTGGCCGCGGCCGCGGCCGCGCGGGGNACCCGCAGTTGNTGGCCGGCGTC GCGCGCCAGCGCACGCAGCGTCGCCGGGAGTTCCCACGTGTTCTCGCGCCNGCTGNTCAT GGCGAATCAACCACCGANATCTCTTTGGCCATTCNGGGGGGCAATN



consensusID : consensus_15324#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 514
fasta sequence
                              [CAAAATTAAAAGTGGCAGTCTTACACGATCTGATCATTACTTGCCCCAAACTCAAGGCAAAAGTTTACAAGGTAGTAGTACATGATTGATGATACATAAGTTTTGCTCCATAAAAAAAGGACCGATTAGAACGCATGTGATTTTCACGAGGAAAACCACTTGATTCGTATGTACAGAAAAACGGTGGAAACCCCTGTAGACTGACCCGGCAAACAAGCATCATCAGTGCATGGATACTGGACCAAAAACACCATAAGCCATAGGCAAAAACACCATAAGAAATTAAAGAGAACGGAGCAAGCGAGCAATCAGCCAGCTAGTACTAGTACATATATATTGTACAGCCGTGATCTGGTCGGAGATGAGACGATGACCCGCCGGCGCGGCGGAGGCCCATCGATCGATCACTTGGGCCCCCAAAGCAGCAGGTGCATCACCTTGTCCGCCTTGCCGCCGCCGTCCGCCGC-GCGCCGCCCCGCCGTTGCCGCCGGCGTGGCCGCGGCCCCAAGTTCCC]

[-] EMBL BI306468             [CAAAATTAAAAGTGGCAGTCTTACACGATCTGATCATTACTTGCCCCAAACTCAAGGCAAAAGTTTACAAGGTAGTAGTACATGATTGATGATACATAAGTTTTGCTCCATAAAAAAAGGACCGATTAGAACGCATGTGATTTTCACGAGGAAAACCACTTGATTCGTATGTACAGAAAAACGGTGGAAACCCCTGTAGACTGACCCGGCAAACAAGCATCATCAGTGCATGGATACTGGACCAAAAACACCATAAGCCATAGGCAAAAACACCATAAGAAATTAAAGAGAACGGAGCAAGCGAGCAATCAGCCAGCTAGTACTAGTACATATATATTGTACAGCCGTGATCTGGTCGGAGATGAGACGATGACCCGCCGGCGCGGCGGAGGCCCATCGATCGATCACTTGGGCCCCCAAAGCAGCAGGTGCATCACCTTGTCCGCCTTGCCGCCGCCGTCCGCCGC GCGCCGCCCCGCCGTTGCCGCCGGCGTG                   ]
[-] EMBL BI305957             [         AAGTGGCAGTCTTACACGATCTGATCATTACTTGCCCCAAACTCAAGGCAAAAGTTTACAAGGTAGTAGTACATGATTGATGATACATAAGTTTTGCTCCATAAAAAAAGGACCGATTAGAACGCATGTGATTTTCACGAGGAAAACCACTTGATTCGTATGTACAGAAAAACGGTGGAAACCCCTGTAGACTGACCCGGCAAACAAGCATCATCAGTGCATGGATACTGGACCAAAAACACCATAAGCCATAGGCAAAAACACCATAAGAAATTAAAGAGAACGGAGCAAGCGAGCAATCAGCCAGCTAGTACTAGTACATATATATTGTACAGCCGTGATCTGGTCGGAGATGAGACGATGACCCGCCGGCGCGGCGGAGGCCCATCGATCGATCACTTGGGCCCCCAAAGCAGCAGGTGCATCACCTTGTCCGCCTTGCCGCCGCCGTCCGCCGC GCGCCGCCCCGCCGTTGCCGCCGGCGTGGCCGCGGCCCCAAG     ]
[-] EMBL BI305597             [         AAGTGGCAGTCTTACACGATCTGATCATTACTTGCCCCAAACTCAAGGCAAAAGTTTACAAGGTAGTAGTACATGATTGATGATACATAAGTTTTGCTCCATAAAAAAAGGACCGATTAGAACGCATGTGATTTTCACGAGGAAAACCACTTGATTCGTATGTACAGAAAAACGGTGGAAACCCCTGTAGACTGACCCGGCAAACAAGCATCATCAGTGCATGGATACTGGACCAAAAACACCATAAGCCATAGGCAAAAACACCATAAGAAATTAAAGAGAACGGAGCAAGCGAGCAATCAGCCAGCTAGTACTAGTACATATATATTGTACAGCCGTGATCTGGTCGGAGATGAGACGATGACCCGCCGGCGCGGCGGAGGCCCATCGATCGATCACTTGGGCCCCCAAAGCAGCAGGTGCATCACCTTGTCCGCCTTGCCGCCGCCGTCCGCCGC GCGCCGCCCCGCCGTTGCCGCCGGCGTG                   ]
[-] EMBL CB965524             [                   CTTACACGATCTGATCATTACTTGCCCCAAACTCAAGGCAAAAGTTTACAAGGTAGTAGTACATGATTGATGATACATAAGTTTTGCTCCATAAAAAAAGGACCGATTAGAACGCATGTGATTTTCACGAGGAAAACCACTTGATTCGTATGTACAGAAAAACGGTGGAAACCCCTGTAGACTGACCCGGCAAACAAGCATCATCAGTGCATGGATACTGGACCAAAAACACCATAAGCCATAGGCAAAAACACCATAAGAAATTAAAGAGAACGGAGCAAGCGAGCAATCAGCCAGCTAGTACTAGTACATATATATTGTACAGCCGTGATCTGGTCGGAGATGAGACGATGACCCGCCGGCGCGGCGGAGGCCCATCGATCGATCACTTGGGCCCCCAAAGCAGCAGGTGCATCACCTTGTCCGCCTTGCCGCCGCCGTCCGCCGC GCGCCGCCCCGCCGTTGCCGCCGGCGT GCCGCGGCCCAGTATTCCC]
[-] EMBL BU673719             [                   CTTACACGATCTGATCATTACTTGCCCCAAACTCAAGGCTAAAGTTTACAAGGTAGTAGTACATGATTGATGATACATAAGTTTTGCTCCATTGTTAAAGGACCGATTAGTACGCATGTGATTTTCACGAGGAAAACCACTTGATTCGTATGTACAGAAAAACGGTGGAAACCCCTGTAGACTGACCCGGCAAACAAGCATCATCAGTGCATGGATACTGGACCAAAAACACCATAAGCCATAGGCAAAAACACCATAAGAAATTAAAGAGAACGGAGCAAGCGAGCAATCAGCCAGCTAGTACTAGTACATATATATTGTACAGCCGTGATCTGGTCGGAGATGAGACGATGACCCGCCGGCGCGGCGGAGGCCCATCGATCGATCACTTGGGCCCCCAAAGCAGCAGGTGCATCACC TGTCCGCCTTGCCGCCGCCGTCCGCCGCGGCGCCGCCCCGCCGTTGC                             ]
[-] EMBL BI305435             [                                             CCAAACTCAAGGCAAAAGTTTACAAGGTAGTAGTACATGATTGATGATACATAAGTTTTGCTCCATAAAAAAAGGACCGATTAGAACGCATGTGATTTTCACGAGGAAAACCACTTGATTCGTATGTACAGAAAAACGGTGGAAACCCCTGTAGACTGACCCGGCAAACAAGCATCATCAGTGCATGGATACTGGACCAAAAACACCATAAGCCATAGGCAAAAACACCATAAGAAATTAAAGAGAACGGAGCAAGCGAGCAATCAGCCAGCTAGTACTAGTACATATATATTGTACAGCCGTGATCTGGTCGGAGATGAGACGATGACCCGCCGGCGCGGCGGAGGCCCATCGATCGATCACTTGGGCCCCCAAAGCAGCAGGTGCATCACCTTGTCCGCCTTGCCGCCGCCGTCCGCCGC GCGCCGCCCCGCCGTTGCCGCC                         ]


>consensus_15324#2 CAAAATTAAAAGTGGCAGTCTTACACGATCTGATCATTACTTGCCCCAAACTCAAGGCAA AAGTTTACAAGGTAGTAGTACATGATTGATGATACATAAGTTTTGCTCCATAAAAAAAGG ACCGATTAGAACGCATGTGATTTTCACGAGGAAAACCACTTGATTCGTATGTACAGAAAA ACGGTGGAAACCCCTGTAGACTGACCCGGCAAACAAGCATCATCAGTGCATGGATACTGG ACCAAAAACACCATAAGCCATAGGCAAAAACACCATAAGAAATTAAAGAGAACGGAGCAA GCGAGCAATCAGCCAGCTAGTACTAGTACATATATATTGTACAGCCGTGATCTGGTCGGA GATGAGACGATGACCCGCCGGCGCGGCGGAGGCCCATCGATCGATCACTTGGGCCCCCAA AGCAGCAGGTGCATCACCTTGTCCGCCTTGCCGCCGCCGTCCGCCGCGCGCCGCCCCGCC GTTGCCGCCGGCGTGGCCGCGGCCCCAAGTTCCC



consensusID : consensus_15324#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 475
fasta sequence
                              [TTTTTTTTACCCAAAATTAAAAGTGGCAGTCTTACACGATNTGATCATTACTTGCCCCAAANTCAAGGCAAAAGTTTACAAGGTAGTAGTACATGATTGATGATACATAAGTTTTGCTCCATAAAAAAAGGACNGATTAGNACGCATGTGATTTTCANGAGGAAAACCACTTGATTCGTATGTACAGAAAAACGGTGGAAACCCTTGTAGATGACCCGGCAAACAAGCATCATCAGTGCATGGATANTGGACCAAAAACACCATAAGAAATTAAAGAGAACGGAGCAAGCGAGCATCAGCCAGNTAGTACTAGTACATATATATTGTACAGCCGTGATCTGGTCGGAGATGAGANGATGACCCGCCGGCGGCGGCCGGCCGGCGCGGCGGAGGCCCATNGATCGATCACTTGGGCCCCCAAAGCAGCAGGTGNATCACCTTGTCCGCCTTGCCGCCGCTCGTGCNGAATCNTGCN]

[-] EMBL BE228969             [TTTTTTTTACCCAAAATTAAAAGTGGCAGTCTTACACGATNTGATCATTACTTGCCCCAAANTCAAGGCAAAAGTTTACAAGGTAGTAGTACATGATTGATGATACATAAGTTTTGCTCCATAAAAAAAGGACNGATTAGNACGCATGTGATTTTCANGAGGAAAACCACTTGATTCGTATGTACAGAAAAACGGTGGAAACCCTTGTAGATGACCCGGCAAACAAGCATCATCAGTGCATGGATANTGGACCAAAAACACCATAAGAAATTAAAGAGAACGGAGCAAGCGAGCATCAGCCAGNTAGTACTAGTACATATATATTGTACAGCCGTGATCTGGTCGGAGATGAGANGATGACCCGCCGGCGGCGGCCGGCCGGCGCGGCGGAGGCCCATNGATCGATCACTTGGGCCCCCAAAGCAGCAGGTGNATCACCTTGTCCGCCTTGCCGCCGCTCGTGCNGAATCNTGCN]


>consensus_15324#3 TTTTTTTTACCCAAAATTAAAAGTGGCAGTCTTACACGATNTGATCATTACTTGCCCCAA ANTCAAGGCAAAAGTTTACAAGGTAGTAGTACATGATTGATGATACATAAGTTTTGCTCC ATAAAAAAAGGACNGATTAGNACGCATGTGATTTTCANGAGGAAAACCACTTGATTCGTA TGTACAGAAAAACGGTGGAAACCCTTGTAGATGACCCGGCAAACAAGCATCATCAGTGCA TGGATANTGGACCAAAAACACCATAAGAAATTAAAGAGAACGGAGCAAGCGAGCATCAGC CAGNTAGTACTAGTACATATATATTGTACAGCCGTGATCTGGTCGGAGATGAGANGATGA CCCGCCGGCGGCGGCCGGCCGGCGCGGCGGAGGCCCATNGATCGATCACTTGGGCCCCCA AAGCAGCAGGTGNATCACCTTGTCCGCCTTGCCGCCGCTCGTGCNGAATCNTGCN



consensusID : consensus_15324#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 389
fasta sequence
                              [CAGCTAGTAGTAGTAGATATATATTGTAGAGCWCGTGATTTGGTCGGAGATGAGATCGATGATCTCGCGGCGGCGGCCGGCTGGCGCGGAGGCKCATNGATCGATCACTTGGGGCGSCAAAGCAGAAGGTGTATCAACDTTGTCCGCTTGTCGCCGCCGTGCGCCGCGCGCCGCCCCGCCGTTGCCGCCGCCGTGGCCGGCCGCGGCCGCGCGGGGTACCCCGCAGCTGCTGGGCCGGCGTGCGCGCGCACAGKGCACGCAGCGTCGCCGGGAGCTCCCACCTGTTCTCGCGCCCGCTGCTCATGGCGAATCAACCACNGCTTTCTCCTTGGCCCTTCTTGCTATGCTATCTAGCTCGTGCTGCTTCTCTGCCGAATTGGACGAGCTCG]

[-] EMBL BE229555             [CAGCTAGTAGTAGTAGATATATATTGTAGAGCWCGTGATTTGGTCGGAGATGAGATCGATGATCTCGCGGCGGCGGCCGGCTGGCGCGGAGGCKCATNGATCGATCACTTGGGGCGSCAAAGCAGAAGGTGTATCAACDTTGTCCGCTTGTCGCCGCCGTGCGCCGCGCGCCGCCCCGCCGTTGCCGCCGCCGTGGCCGGCCGCGGCCGCGCGGGGTACCCCGCAGCTGCTGGGCCGGCGTGCGCGCGCACAGKGCACGCAGCGTCGCCGGGAGCTCCCACCTGTTCTCGCGCCCGCTGCTCATGGCGAATCAACCACNGCTTTCTCCTTGGCCCTTCTTGCTATGCTATCTAGCTCGTGCTGCTTCTCTGCCGAATTGGACGAGCTCG]


>consensus_15324#4 CAGCTAGTAGTAGTAGATATATATTGTAGAGCWCGTGATTTGGTCGGAGATGAGATCGAT GATCTCGCGGCGGCGGCCGGCTGGCGCGGAGGCKCATNGATCGATCACTTGGGGCGSCAA AGCAGAAGGTGTATCAACDTTGTCCGCTTGTCGCCGCCGTGCGCCGCGCGCCGCCCCGCC GTTGCCGCCGCCGTGGCCGGCCGCGGCCGCGCGGGGTACCCCGCAGCTGCTGGGCCGGCG TGCGCGCGCACAGKGCACGCAGCGTCGCCGGGAGCTCCCACCTGTTCTCGCGCCCGCTGC TCATGGCGAATCAACCACNGCTTTCTCCTTGGCCCTTCTTGCTATGCTATCTAGCTCGTG CTGCTTCTCTGCCGAATTGGACGAGCTCG



consensusID : consensus_15324#5
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 240
fasta sequence
                              [CAAATGCAAGCCAAGCTGAGTGACTGAGTACATGATGATGATTGGTGACATGCCGTGATGCTGGGTGCAGGAGATGAGACGATGGACCCAGCCAGGCGCGGCGGAGGCCCATGCAGATGCGATCACTTGGGCCCCCAAAGCAGCAGGTGCATCACCTTGTCCGCCTTGCCACCACCGTCCACCGCGCACCGCCCCGCCGTTGCCGCCGGCGTGCCGCGGCCCAAGCTTATTCCCTGTTGA]

[-] EMBL CB965898             [CAAATGCAAGCCAAGCTGAGTGACTGAGTACATGATGATGATTGGTGACATGCCGTGATGCTGGGTGCAGGAGATGAGACGATGGACCCAGCCAGGCGCGGCGGAGGCCCATGCAGATGCGATCACTTGGGCCCCCAAAGCAGCAGGTGCATCACCTTGTCCGCCTTGCCACCACCGTCCACCGCGCACCGCCCCGCCGTTGCCGCCGGCGTGCCGCGGCCCAAGCTTATTCCCTGTTGA]


>consensus_15324#5 CAAATGCAAGCCAAGCTGAGTGACTGAGTACATGATGATGATTGGTGACATGCCGTGATG CTGGGTGCAGGAGATGAGACGATGGACCCAGCCAGGCGCGGCGGAGGCCCATGCAGATGC GATCACTTGGGCCCCCAAAGCAGCAGGTGCATCACCTTGTCCGCCTTGCCACCACCGTCC ACCGCGCACCGCCCCGCCGTTGCCGCCGGCGTGCCGCGGCCCAAGCTTATTCCCTGTTGA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_15324#2      --------------CAAAATTAAAAGTGGCAGTCTTACACGATCTGATCATTACTTGCCC 46
consensus_15324#3      ---TTTTTTTTACCCAAAATTAAAAGTGGCAGTCTTACACGATNTGATCATTACTTGCCC 57
consensus_15324#1      --------TTTTTTTTTTTTTTTTTTTGGCAGTCTTACACGATCTGATCATTACTTGCCC 52
consensus_15324#5      ------------------------------------------------------------
consensus_15324#0      TCTTTTTAGGTTTTTTAAATTAAAAGTGGCAGTCTTACACGATCTGATCATTACTTGCCC 60
consensus_15324#4      ------------------------------------------------------------
                                                                                   

consensus_15324#2      CAAACTCAAGGCAAAAGTTTACAAGGTAGTAGTACATGATTGATGATACATAAGTTTTGC 106
consensus_15324#3      CAAANTCAAGGCAAAAGTTTACAAGGTAGTAGTACATGATTGATGATACATAAGTTTTGC 117
consensus_15324#1      CAAACTCAAGGCAAAAGTTTACAAGGTAGTAGTACATGATTGATGATACATAAGTTTTGC 112
consensus_15324#5      ------------------------------------------------------------
consensus_15324#0      CAAACTCAAGGCAAAAGTTTACAAGGTAGTAGTACATGATTGATGATACATAAGTTTTGC 120
consensus_15324#4      ------------------------------------------------------------
                                                                                   

consensus_15324#2      TCCATAAAAAAAGGACCGATTAGAACGCATGTGATTTTCACGAGGAAAACCACTTGATTC 166
consensus_15324#3      TCCATAAAAAAAGGACNGATTAGNACGCATGTGATTTTCANGAGGAAAACCACTTGATTC 177
consensus_15324#1      TCCATAAAAAAAGGACCGATTAGAACGCATGTGATTTTCACGAGGAAAACCACTTGATTC 172
consensus_15324#5      ------------------------------------------------------------
consensus_15324#0      TCCATAAAAAAAGGACCGATTAGAACGCATGTGATTTTCACGAGGAAAACCACTTGATTC 180
consensus_15324#4      ------------------------------------------------------------
                                                                                   

consensus_15324#2      GTATGTACAGAAAAACGGTGGAAACCCCTGTAGACTGACCCGGCAAACAAGCATCATCAG 226
consensus_15324#3      GTATGTACAGAAAAACGGTGGAAACCCTTGTAGA-TGACCCGGCAAACAAGCATCATCAG 236
consensus_15324#1      GTATGTACAGAAAAACGGTGGAAACCCCTGTAGACTGACCCGGCAAACAAGCATCATCAG 232
consensus_15324#5      ------------------------------------------------------------
consensus_15324#0      GTATGTACAGAAAAACGGTGGAAACCCCTGTAGACTGACCCGGCAAACAAGCATCATCAG 240
consensus_15324#4      ------------------------------------------------------------
                                                                                   

consensus_15324#2      TGCATGGATACTGGACCAAAAACACCATAAGCCATAGGCAAAAACACCATAAGAAATTAA 286
consensus_15324#3      TGCATGGATANTGGACCAAAAACACCATAAG----------------------AAATTAA 274
consensus_15324#1      TGCATGGATACTGGACCAAAAACACCATAAG----------------------AAATTAA 270
consensus_15324#5      ------------------------------------------------------------
consensus_15324#0      TGCATGGATACTGGACCAAAAACACCATAAG----------------------AAATTAA 278
consensus_15324#4      ------------------------------------------------------------
                                                                                   

consensus_15324#2      AGAGAACGGAGCAAGC-GAGCAATCAGCCAGCTAGTACTAGTACAT-ATATATTGTACAG 344
consensus_15324#3      AGAGAACGGAGCAAGC-GAGCA-TCAGCCAGNTAGTACTAGTACAT-ATATATTGTACAG 331
consensus_15324#1      AGAGAACGGAGCAAGC-GAGCAATCAGCCAGCTAGTANTAGNAAAN-ANANATTGTACAG 328
consensus_15324#5      CAAATGCAAGCCAAGCTGAGTGACTGAGTACATGATGATGATTGGTGACATGCCGTGATG 60
consensus_15324#0      AGAGAACGGAGCAAGC-GAGCAATCAGCCAGCTAGTACTAGTACAT-ATATATTGTACAG 336
consensus_15324#4      ----------------------------CAGCTAGTAGTAGTAGAT-ATATATTGTAGAG 31
                                                    *  *  *  *        * *    **   *

consensus_15324#2      C-CGTGATCTGGTCGGAGATGAGA-CGATGACCCGCCGGCG--------------CGGCG 388
consensus_15324#3      C-CGTGATCTGGTCGGAGATGAGA-NGATGACCCGCCGGCGGCGGCCGGCCGGCGCGGCG 389
consensus_15324#1      C-CGTGATCTGGTCGGAGATGAGA-CGATGACCCGCCGGCGGCGGCCGGCCGGCGCGGCG 386
consensus_15324#5      C-TGGGT----GCAGGAGATGAGA-CGATGGAC--CCAGCCA---------GGCGCGGCG 103
consensus_15324#0      C-CGTGATCTGGTCGGAGATGAGA-CGATGACCCGCCGGCGGCGGCCGGCCGGCGCGGCG 394
consensus_15324#4      CWCGTGATTTGGTCGGAGATGAGATCGATGATCTCGCGGCGGCGGCCGGCTGGC---GCG 88
                       *  * *     *  **********  ****  *   * **                 ***

consensus_15324#2      GAGGCCCATC--GAT-CGATCACTTGGGCCCCCAAAGCAGCAGGTGCATCACCTTGTCCG 445
consensus_15324#3      GAGGCCCATN--GAT-CGATCACTTGGGCCCCCAAAGCAGCAGGTGNATCACCTTGTCCG 446
consensus_15324#1      GAGGCCCATC--GAT-CGATCACTTGGGCCCCCAAAGCAGCAGGTGCATCACNTTGTCCG 443
consensus_15324#5      GAGGCCCATGCAGATGCGATCACTTGGGCCCCCAAAGCAGCAGGTGCATCACCTTGTCCG 163
consensus_15324#0      GAGGCCCATC--GAT-CGATCACTTGGGCCCCCAAAGCAGCAGGTGCATCACCTTGTCCG 451
consensus_15324#4      GAGGCKCATN--GAT-CGATCACTTGGGGCGSCAAAGCAGAAGGTGTATCAACDTTGTCC 145
                       ***** ***   *** ************ *  ******** ***** ****   *   * 

consensus_15324#2      CCTTGCCGCCGCCGTCCGCCGCGCGCCGCCCCGCCGTTGCCGCCGGCGTGG----CCGCG 501
consensus_15324#3      CCTTGCCGCCGCT-CGTGCNGAATCNTGCN------------------------------ 475
consensus_15324#1      CTTTGCCGCCGCNGTCCGCCGCGCGCCGCCCCGCCGTTGCCGCCGGCGTGG----CCGCG 499
consensus_15324#5      CCTTGCCACCACCGTCCACCGCGCACCGCCCCGCCGTTGCCGCCGGCGTG-----CCGCG 218
consensus_15324#0      CCTTGCCGCCGCCGTCCGCCGCGCGCCGCCCCGCCGTTGCCGCCGGCGTGG----CCGCG 507
consensus_15324#4      GCTTGTCGCCGCCGTGCGCCGCGCGCCGCCCCGCCGTTGCCGCCGCCGTGGCCGGCCGCG 205
                         *** * ** *      * *      **                               

consensus_15324#2      GCCCCAAGTTCCC----------------------------------------------- 514
consensus_15324#3      ------------------------------------------------------------
consensus_15324#1      GCCGCGGCCGCGCGGGGNACCCGCAGTTGNTGGCCGGCGTCGCGCGCCAGCGCACGCAGC 559
consensus_15324#5      GCCCAAGCTTATTCCCTGTTGA-------------------------------------- 240
consensus_15324#0      GCCGCGGCCGCGCGGGGTACCCGCAGCTGCTGGCCGGCGTCGCGCGCCAGCGCACGCAGC 567
consensus_15324#4      GCCGCGCGGGGTACCCCGCAGCTGCTGGGCCGGCGTGCGCGCGCACAGKGCACGCAGCGT 265
                                                                                   

consensus_15324#2      ------------------------------------------------------------
consensus_15324#3      ------------------------------------------------------------
consensus_15324#1      GTCGCCGGGAGTTCCCACGTGTTCTCGCGCCNGCTGNTCATGGCGAATCAACCACCGANA 619
consensus_15324#5      ------------------------------------------------------------
consensus_15324#0      GTCGCCGGGAGCTCCCACCTGCTCTCGCGCCCGCTGCTCATGGCGAATCAACCACCGCTT 627
consensus_15324#4      CGCCGGGAGCTCCCACCTGTTCTCGCGCCCGCTGCTCATGGCGAATCAACCACNGCTTTC 325
                                                                                   

consensus_15324#2      ------------------------------------------------------------
consensus_15324#3      ------------------------------------------------------------
consensus_15324#1      TCTCTTTGGCCATTCNGGGGGGCAATN--------------------------------- 646
consensus_15324#5      ------------------------------------------------------------
consensus_15324#0      TCTCCTTGGCCCTTCTTGCTATGCTATCTAGCTCGTGCTGCTCATCCTCACCTCGTGCCG 687
consensus_15324#4      TCCTTGGCCCTTCTTGCTATGCTATCTAGCTCGTGCTGCTTCTCTGCCGAATTGGACGAG 385
                                                                                   

consensus_15324#2      ----
consensus_15324#3      ----
consensus_15324#1      ----
consensus_15324#5      ----
consensus_15324#0      ----
consensus_15324#4      CTCG 389
                           




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)