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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15327#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 20 consensus length = 2157 fasta sequence
[TACACCGGCCACCACCAGTCACACAACACAACAATTTAGGATTGGTAGAGCCCATCTCTGAGCCCTGCCTTGCTGGCCCTGAGCTCTCTCTTGCTGCTTCTTTTAATGGGTTTTTTGTCTCCTTGGATTTGTGCTTGTGCTCACCTGGGCGTGGAGTTCTCTGCATGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGACACCTCTGAGCTGTTTCTTCAACAAGTCTTCAAGATTTGGCAGAGCTACTGAGAGAGAGCAAAGGAGAGGAGGGCTATA-GGGAAAAAAGTA----TTTTTTTTT--GGGGGTACAAATTTCTTGCTTGATTCTCTTCGATCCCGGAGAGCAGCCACCAGTTGAGGCACAATCCTTGCTGTTCGTGTGCCTGGGTTTGATAGCTGTCCAGATCTGCGGCACTTGCCCGATAGATTCCAAGAATCCGAGCACAAACTCTCGTTTGCTGCGAAAAGATAGTAGGTGGAATAAGTTGAGCAATACGGTGGAGATAAGAGAGATAGCTTGTGTCTCGTGATGCCATCAAGAAACTGCGTGGAGGAGGAGGAGAGTGTGAGATGAAGGATGCTGGCCGCGGTGATGGACTACTTCAGGTCCTGCTGGGGCCCGCGATCTCCGGCCGGTCACCGGGTCAGGGGCTCCGACGTCGCCGGCCGGCAAGACGGGCTCCTGTGGTATAAGGACGCCGGCCAGCTGGTCACCGGGGAGTTCTCCATGGCTGTGGTTCAGGCCAACAACCTGCTGGAGGACCAGAGCCAGGTGGAGTCCGGCGCGCTCTCCATGGCCGAGCCCGGCCCTCAGGGCACCTTCATCGGCGTCTATGATGGCCACGGC--GGCCCGGAGACGGCGCGGTTCATCAATGACCACATGTTCCACCATCTCAGGAGATTTGCAACTGAGCACAAGTGCATGTCAACCGATGTGATTCGGAAAGCTTTCCAAGCAACTGAGGAGGGCTTCCTTTCTCTAGTCAGTAAGCAATGGTCCTTGAAGCCTCAGATTGCAGCAGTAGGATCTTGCTGCCTAGTTGGTGTTATTTGCTCAGGGACTCTCTATGTTGCGAACCTTGGAGATTCGCGTGCTGTTCTTGGGAGATTTGTCAAGTCCACTGGGGAAGTTGTGGCAACGCAGCTATCATCAGAACACAACGCGTGCTATGAGGAAGTTAGACAAGAATTGCAGGCATCACATCCTGATGATCCACAAATTGTTGTCCTAAAACACAATGTTTGGCGTGTCAAGGGCCTCATCCAGATCTCAAGATCTATTGGCGATGTATATCTAAAAAGACCAGAATATAACAGAGAACCTCTTCACAGCAAGTTTCGACTTCGGGAAACCTTCAAAAGGCCGATTCTTAGTTCTGAACCTGCAATTGCTGTACACCAAATACAACCAAATGATCATTTTGTTATATTTGCTTCTGATGGTCTATGGGAGCACCTCAGTAATCAGGAAGCAGTTGACCTTGTCCAAAATAATCCTCGTAATGGGATTGCTCGAAGACTAGTTAAAGTCGCAATGCAAGAAGCAGCCAAGAAGAGGGAGATGAGATACTCAGACCTCAAGAAAATTGATCGTGGCGTGAGGCGTCATTTCCACGACGATATAACCGTCATTGTGGTGTTTCTTGATTCGAATGCCATAAGCAAAGCAAACT-GGAGCCGAGGTCCTTCTGTTTCCCTG-AGAGGGGGTGGTGT-CACCCT-CCCTGCAAATTCCCTTGCGCCTTTCTCGGC-T-CCCACGGTGTTAAGCAGCACCTATTGAAGGAGCTATACTGCAAAGAACATGAACATCTACAGTAACACAGATGGAGGTGAAAGCAGCTGCCGTTATCAAGTGTACTGTACTCCTTCTGTGTTGCTCTTATGAAACTGTTTAGACCCCACCTGGTAATTAGTGTACTGATAGCGAGGTATAAGATTAGATTATTCCTTAGCAACGCAATCTTTTTTTTCTTTTCTTTTTCTTTTTCCTTCTTTATTCTTATCCTTTCTCTTACCCACGAGAGAACAGGTGGTTGTAAATTGCCCAGAACACC-TTTTTCGTAATAGTCCATCATATCCCCTTTTTTCGTGTTGATAATGAAGGCATTGCTAAAAAAAAAAAAAAAGGGTAAAAAAAAAA]
[+] EMBL C98839 [TACACCGGCCACCACCAGTCACACAACACAACAATTTAGGATTGGTAGAGCCCATCTCTGAGCCCTGCCTTGCTGGCCCTGAGCTCTCTCTTGCTGCTTCTTTTAATGGGTTTTTTGTCTCCTTGGATTTGTGCTTGTGCTCACCTGGGCGTGGAGTTCTCTGCATGAGAGAGAGAGAGAGANAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGACACCTCTGANCTGTTTCTTCAACAAGTCTTCAAGATTTGGCAGA CTACTGAGAGAGANCAAAGGAGAAGAGGGCTATANGGGAAAAAAATAATTTTTTTTTTTT GGGGGANCAAATT ]
[+] EMBL CB668230 [ GCCCCTTTCTAAGCCCTGCCTTGCTGGCCCTGAGCTCTCTCTTGCTGCTTCTTTTAATGGGTTTTTTGTCTCCTTGGATTTGTGCTTGTGCTCACCTGGGCGTGGAGTTCTCTGCATGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGACACCTCTGAGCTGTTTCTTCAACAAGTCTTCAAGATTTGGCAGAGCTACTGAGAGAGAGCAAAGGAGAGGAGGGCTATA GGGAAAAAAGTAT TTTTTTTTT GGGGGTACAAATTTCTTGCTTGATTCTCTTCGATCCCGGAGAGCAGCCACCAGTTGAGGCACAATCCTTGCTGTTCGTGTGCCTGGGTTTGATAGCTGTCCAGATCTGCCGCACTTGCCCGATAGATTCCAAGAATCCGAGCACAAACTCTCGTTTGCTGCGAAAAGATAGTAGGTGGAATAAGTTGAGCAATACCGTGGAGATAAGAGAGATAGCTTGTGTCTCGTGATGCCATCAAGAAACTGCGTGGAGGAGGAGGAGAGTGTGATATGAAGGATGCTGGCCGCGGTGATGGACTACTTCAGGTCCTGCTGGGGCCCGCGATCTCCGGCCGGTCACCGGGTCAGG ]
[+] EMBL AK065303 [ TCACCTGGGCGTGGAGTTCTCTGCATGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGACACCTCTGAGCTGTTTCTTCAACAAGTCTTCAAGATTTGGCAGAGCTACTGAGAGAGAGCAAAGGAGAGGAGGGCTATA GGGAAAAAAGTA TTTTTTTTT GGGGGTACAAATTTCTTGCTTGATTCTCTTCGATCCCGGAGAGCAGCCACCAGTTGAGGCACAATCCTTGCTGTTCGTGTGCCTGGGTTTGATAGCTGTCCAGATCTGCGGCACTTGCCCGATAGATTCCAAGAATCCGAGCACAAACTCTCGTTTGCTGCGAAAAGATAGTAGGTGGAATAAGTTGAGCAATACGGTGGAGATAAGAGAGATAGCTTGTGTCTCGTGATGCCATCAAGAAACTGCGTGGAGGAGGAGGAGAGTGTGAGATGAAGGATGCTGGCCGCGGTGATGGACTACTTCAGGTCCTGCTGGGGCCCGCGATCTCCGGCCGGTCACCGGGTCAGGGGCTCCGACGTCGCCGGCCGGCAAGACGGGCTCCTGTGGTATAAGGACGCCGGCCAGCTGGTCACCGGGGAGTTCTCCATGGCTGTGGTTCAGGCCAACAACCTGCTGGAGGACCAGAGCCAGGTGGAGTCCGGCGCGCTCTCCATGGCCGAGCCCGGCCCTCAGGGCACCTTCATCGGCGTCTATGATGGCCACGGC GGCCCGGAGACGGCGCGGTTCATCAATGACCACATGTTCCACCATCTCAGGAGATTTGCAACTGAGCACAAGTGCATGTCAACCGATGTGATTCGGAAAGCTTTCCAAGCAACTGAGGAGGGCTTCCTTTCTCTAGTCAGTAAGCAATGGTCCTTGAAGCCTCAGATTGCAGCAGTAGGATCTTGCTGCCTAGTTGGTGTTATTTGCTCAGGGACTCTCTATGTTGCGAACCTTGGAGATTCGCGTGCTGTTCTT GGAGATTTGTCAAGTCCACTGGGGAAGTTGTGGCAACGCAGCTATCATCAGAACACAACGCGTGCTATGAGGAAGTTAGACAAGAATTGCAGGCATCACATCCTGATGATCCACAAATTGTTGTCCTAAAACACAATGTTTGGCGTGTCAAGGGCCTCATCCAGATCTCAAGATCTATTGGCGATGTATATCTAAAAAGACCAGAATATAACAGAGAACCTCTTCACAGCAAGTTTCGACTTCGGGAAACCTTCAAAAGGCCGATTCTTAGTTCTGAACCTGCAATTGCTGTACACCAAATACAACCAAATGATCATTTTGTTATATTTGCTTCTGATGGTCTATGGGAGCACCTCAGTAATCAGGAAGCAGTTGACCTTGTCCAAAATAATCCTCGTAATGGGATTGCTCGAAGACTAGTTAAAGTCGCAATGCAAGAAGCAGCCAAGAAGAGGGAGATGAGATACTCAGACCTCAAGAAAATTGATCGTGGCGTGAGGCGTCATTTCCACGACGATATAACCGTCATTGTGGTGTTTCTTGATTCGAATGCCATAAGCAAAGCAAACT GGAGCCGAGGTCCTTCTGTTTCCCTG AGAGGGGGTGGTGT CACCCT CCGTGCAAATTCCCTTGCGCCTTTCTCAAC T CCCACGGTGTTAAGCAGCACCTATTGAAGGAGCTATACTGCAAAGAACATGAACATCTACAGTAACACAGATGGAGGTGAAAGCAGCTGCCGTTATCAACTGTACTGTACTCCTTCTGTGTTGCTCTTATGAAACTGTTTAGACCCCACCTGGTAATTAGTGTACTGATAGCGAGGTATAAGATTAGATTATTCCTTAGCAACGCAATCTTTTTTTTCTTTTCTTTTTCTTTTTCCTTCTTTATTCTTATCCTTTCTCTTACCCACGAGAGAACAGGTGGTTGTAAATTGCCCAGAACACC TTTTTCGTAATAGTCCATCATATCCCCTTT ]
[+] EMBL CB639994 [ TGCATCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGACACCTCTGAGCTGTTTCTTCAACAAGTCTTCAAGATTTGGCAGAGCTACTGAGAGAGAGCAAAGGAGAGGAGGGCTATA TGGAAAAAAGT TTTTTTTTT GGGGGTACAAATTTCTTGCTTGATTCTCTTCGATCCCGGAGAGCAGCCACCAGTTGAGGCACAATCCTTGCTGTTCGTGTGCCTGGGTTTGATAGCTGTCCAGATCTGCGGCACTTGCCCGATAGATTCCAAGAATCCGAGCACAAACTCTCGTTTGCTGCGAAAAGATAGTAGGTGGAATAAGTTGAGCAATACGGTGGAGATAAGAGAGATAGCTTGTGTCTCGTGATGCCATCAAGAAACTGCGTGGAGGAGGAGGAGAGTGTGAGATGAAAGATGCTGGCCGCGGTG ]
[+] EMBL CB619059 [ AGAGAGAGAGGACACCTCTGAGCTGTTTCTTCAACAAGTCTTCAAGATTTGGCAGAGCTACTGAGAGAGAGCAAAGGAGAGGAGGGCTATA GGGAAAAAAGGA TTTTTTTTTTGGGGGGTACAAATTTCTTGCTTGATTCTCTTCGATCCCGGAGAGCAGCCACCAGTTGAGGCACAATCCTTGCTGTTCGTGTGCCTGGGTTTGATAGCTGTCCAGATCTGCGGCACTTGCCCGATAGATTCCAAGAATCCGAGCACAAACTCTCGTTTGCTGCGAAAAGATAGTAGGTGGAATAAGTTGAGCAATACGGTGGAGATAAGAGAGAGAGCTTGTGTCTCGTGATGCCATCAAGAAACTGCGTGGAGGAGGAGGAGAGTGTGAGATGAAGGATGCTGGCCGCGGTGATGGACTACTTCAGGTCCTGCTGGGGCCCGCGATCTCCGGCCGGTCACCGGGTCAGGGGCTCCGACGTCGCCGGCCGGCAAGACGGGCTCCTGTGGTATAAGGACGCCGGCCAGCTGGTCACCGGGGAGTTCTCCATGGCTGTGGTTCAGGCCAACAACCTGCTGGAGGACCAGAGCCAGGTGGAGTCCGGCGCGCTCTCCATGGCCGAGCCCGGCCCTCAGGGCACCTTCATCGGCGTCTATGATGGCCACGGC GGCCCGGAGACGGCGCGGTTCATCAATGACCACATGTTCCACCATCTCAGGAGATTTGCAACTGAGCACAAGTGCATGTCAACAGATGTGATTCGGAAAGCTTTCC AGCAACTGAGGAGGGCTTCCTTTC ]
[+] EMBL CB618811 [ AGAGAGAGAGGACACCTCTGAGCTGTTTCTTCAACAAGTCTTCAAGATTTGGCAGAGCTACTGAGAGAGAGCAAAGGAGAGGAGGGCTATA GGGAAAAAAGGA TTTTTTTTTTGGGGGGTACAAATTTCTTGCTTGATTCTCTTCGATCCCGGAGAGCAGCCACCAGTTGAGGCACAATCCTTGCTGTTCGTGTGCCTGGGTTTGATAGCTGTCCAGATCTGCGGCACTTGCCCGATAGATTCCAAGAATCCGAGCACAAACTCTCGTTTGCTGCGAAAAGATAGTAGGTGGAATAAGTTGAGCAATACGGTGGAGATAAGAGAGAGAGCTTGTGTCTCGTGATGCCATCAAGAAACTGCGTGGAGGAGGAGGAGAGTGTGAGATGAAGGATGCTGGCCGCGGTGATGGACTACTTCAGGTCCTGCTGGGGCCCGCGATCTCCGGCCGGTCACCGGGTCAGGGGCTCCGACGTCGCCGGCCGGCAAGACGGGCTCCTGTGGTATAAGGACGCCGGCCAGCTGGTCACCGGGGAGTTCTCCATGGCTGTGGTTCAGGCCAACAACCTGCTGGAGGACCAGAGCCAGGTGGAGTCCGGCGCGCTCTCCATGGCCGAGCCCGGCCCTCAGGGCACCTTCATCGGCGTCTATGATGGCCACCGC CGCCCGGAGACGGCGCGGTTCATCAA ]
[+] EMBL CF196192 [ GTGTGAGATGAAGGATGCTGGCCGCGGTGATGGACTACTTCAGGTCCTGCTGGGGCCCGCGATCTCCGGCCGGTCACCGGGTCAGGGGCTCCGACGTCGCCGGCCGGCAAGACGGGCTCCTGTGGTATAAGGACGCCGGCCAGCTGGTCACCGGGGAGTTCTCCATGGCTGTGGTTCAGGCCAACAACCTGCTGGAGGACCAGAGCCAGGTGGAGTCCGGCGCGCTCTCCATGGCCGAGCCCGGCCCTCAGGGCACCTTCATnng ]
[+] EMBL BU099196 [ TGAGATGAAGGATGCTGGCCGCGGTGATGGACTACTTCAGGTCCTGCTGGGGCCCGCGATCTCCGGCCGGTCACCGGGTCAGGGGCTCCGACGTCGCCGGCCGGCAAGACGGGCTCCTGTGGTATAAGGACGCCGGCCAGCTGGTCACCGGGGAGTTCTCCATGGCTGTGGTTCAGGCCAACAACCTGCTGGAGGACCAGAGCCAGGTGGAGTCCGGCGCGCTCTCCATGGCCGAGCCCGGCCCTCAGGGCACCTTCATCGGCGTCTATGATGGCCACNGCNNNGCCC GAGACGGCGCGGGTCATCAATGACCACATGTNCCCACATCTCAGGAGATTTGCAACTGACCACAAGTGCATGTTAACCGATGTGATTTCGAAAGCTTTCC AGCA ]
[+] EMBL CA998065 [ GGATGCTGGCCGCGGTGATGGACTACTTCAGGTCCTGCTGGGGCCCGCGATCTCCGGCCGGTCACCGGGTCAGGGGCTCCGACGTCGCCGGCCGGCAAGACGGGCTCCTGTGGTATAAGGACGCCGGCCAGCTGGTCACCGGGGAGTTCTCCATGGCTGTGGTTCAGGCCAACAACCTGCTGGAGGACCAGAGCCAGGTGGAGTCCGGCGCGCTCTCCATGGCCGAGCCCGGCCCTCAGGGCACCTTCATCGGCGTCTATGATGGCCACGGC GGCCCGGAGACGGCGCGGTTCATCAATGACCACATGTTCCACCATCTCAGGAGATTTGCAACTGAGCACAAGTGCATGTCAACCGATGTGATTCGGAAAGCTTTCCAAGCAACTGAGGAGGGCTTCCTTTCTCTAGTCAGTAAGCAATGGTCCTTGAAGCCTCAGATTGCAGCAGTAGGATCTTGCTGCCTAGTTGGTGTTATTTGCTCAGGGACTCTCTATGTTGCGAACCTTGGAGATTCGCGTGCTGTTCTTGGGAGATTTGTCAAGTCCACTGGGGAAGTTGTGGCAACGCAGCTATCATCAGAACACAA ]
[+] EMBL CF197191 [ GAGCACAAGTGCATGTCAACAGATGTGATTCGGAAAGCTTTCCAAGCAACTGAGGAGGGCTTCCTTTCTCTAGTCAGTAAGCAATGGTCCTTGAAGCCTCAGATTGCAGCAGTAGGATCTTGCTGCCTAGTTGGTGTTATTTGCTCAGGGACTCTCTATGTTGCGAACCTTGGAGATTCGCGTGCTGTTCTTGGGAGATTTGTCAAGTCCACTGGGGAAGTTGTGGCAACGCAGCTATCATCAGAACACAACGCGTGCTATGAGGAAGTTAGACAAGAATTGCAGGCATCACATCCTGATGATCCACAAATTGTTGTCCTAAAACACAATGTTTGGCGTGTCAAGGGCCTCATCCAGATCTCAAGATCTATTGGCGATGTATATCTAAAAAGACCAGAATATAACAGAGAACCTCTTCACAGCAAGTTTCGACTTCNNGAAACCTTCAAAAGGCCGATTCTTNNNTCTGAACCTGCNNTTGCTGTACACCAAATnnnnnnnn ]
[+] EMBL CA766893 [ TATTTGCTCAGGGACTCTCTATGTTGCGAACCTTGGTGATTCGCGTGCTGTTCTTGGGAGATTTGTCAAGTCCACTGGGGAAGTTGTGGCAACGCAGCTATCATCAGAACACAACGCGTGCTATGAGGAAGTTAGACAAGAATTGCAGGCATCACATCCTGATGATCCACAAATTGTTGTCCTAAAACACAATGTTTGGCGTGTCAAGGGCCTCATCCAGATCTCAAGATCTATTGGCGATGTATATCTAAAAAGACCAGAATATAACAGAGAACCTCTTCACAGCAAGTTTCGACTTCGGGAAACCTTCAAAAGGCCGATTCTTAGTTCTGAACCTGCAATTGCTGTACACCAAATACAACCAAATGATCATTTTGTTATATTTGCTTCTGATGGTCTATGGGAGCACCTCAGTAATCAGGAAGCAGTTGACCTTGTCCAAAATAATCCTCGTAATGGGATTGCTCGAAGACTAGTTAAAGTCGCAATGCAAGAAGCAGCCAAGAAGAGGGAGATGAGATACTCAGACCTCAAGAAAATTGATCGTGGCGTGAGGCGTCATTTCCACGACGATATAACCGTCATTGTGGTGTTTCTTGATTCGAATGCCATAAGCAAAGCAAGCT GGAGCCGAGGTCCTTCTGTTTCCCTG AGAGGGGGTGGTGT CACCCT NCCTGCAAATTCCCTTGCGCCTTTCTCGGC T NCCACGGTGNTAAGCAGCACCTATTGAAGGAGCTATACTGCAAAGAACATGAACATCTACAGTAACACAGATGGAGGTGAAAGCAGCTGNCGGTATCAAGGGNACTGGACTCCTTCTGGGGTGCTCTTATGAAACTGGTTAn ]
[+] EMBL AK061618 [ TAGACAAGAATTGCAGGCATCACATCCTGATGATCCACAAATTGTTGTCCTAAAACACAATGTTTGGCGTGTCAAGGGCCTCATCCAGATCTCAAGATCTATTGGCGATGTATATCTAAAAAGACCAGAATATAACAGAGAACCTCTTCACAGCAAGTTTCGACTTCGGGAAACCTTCAAAAGGCCGATTCTTAGTTCTGAACCTGCAATTGCTGTACACCAAATACAACCAAATGATCATTTTGTTATATTTGCTTCTGATGGTCTATGGGAGCACCTCAGTAATCAGGAAGCAGTTGACCTTGTCCAAAATAATCCTCGTAATGGGATTGCTCGAAGACTAGTTAAAGTCGCAATGCAAGAAGCAGCCAAGAAGAGGGAGATGAGATACTCAGACCTCAAGAAAATTGATCGTGGCGTGAGGCGTCATTTCCACGACGATATAACCGTCATTGTGGTGTTTCTTGATTCGAATGCCATAAGCAAAGCAAACT GGAGCCGAGGTCCTTCTGTTTCCCTG AGAGGGGGTGGTGT CACCCT CCCTGCAAATTCCCTTGCGCCTTTCTCAAC T CCCACGGTGTTAAGCAGCACCTATTGAAGGAGCTATACTGCAAAGAACATGAACATCTACAGTAACACAGATGGAGGTGAAAGCAGCTGCCGTTATCAACTGTACTGTACTCCTTCTGTGTTGCTCTTATGAAACTGTTTAGACCCCACCTGGTAATTAGTGTACTGATAGCGAGGTATAAGATTAGATTATTCCTTAGCAACGCAATCTTTTTTTTCTTTTCTTTTTCTTTTTCCTTCTTTATTCTTATCCTTTCTCTTACCCACGAGAGAACAGGTGGTTGTAAATTGCCCAGAACACC T ]
[+] EMBL CF196026 [ TCTAAAAAGACCAGAATATAACAGAGAACCTCTTCACAGCAAGTTTCGACTTCGGGAAACCTTCAAAAGGCCGATTCTTAGTTCTGAACCTGCAATTGCTGTACACCAAATACAACCAAATGATCATTTTGTTATATTTGCTTCTGATGGTCTATGGGAGCACCTCAGTAATCAGGAAGCAGTTGACCTTGTCCAAAATAATCCTCGTAATGGGATTGCTCGAAGACTAGTTAAAGTCGCAATGCAAGAAGCAGCCAAGAAGAGGGAGATGAGATACTCAGACCTCAAGAAAATTGATCGTGGCGTGNNNCGTCATTTCCACGNNNATATAACCGTCATTGTGGTGTTTCTTGATTCGAATGCCATAAGCAAAGCAAACT GGnnnnnn ]
[-] EMBL CB619060 [ AACAGAGAACCTCTTCACAGCAAGTTTCGACTTCGGGAAACCTTCAAAAGGCCGATTCTTAGTTCTGAACCTGCAATTGCTGTACACCAAATACAACCAAATGATCATTTTGTTATATTTGCTTCTGATGGTCTATGGGAGCACCTCAGTAATCAGGAAGCAGTTGACCTTGTCCAAAATAATCCTCGTAATGGGATTGCTCGAAGACTAGTTAAAGTCGCAATGCAAGAAGCAGCCAAGAAGAGGGAGATGAGATACTCAGACCTCAAGAAAATTGATCGTGGCGTGAGGCGTCATTTCCACGACGATATAACCGTCATTGTGGTGTTTCTTGATTCGAATGCCATAAGCAAAGCAAACT GGAGCCGAGGTCCTTCTGTTTCCCTG AGAGGGGGTGGTGT CACCCT CCCTGCAAATTCCCTTGCGCCTTTCTCGGC T CCCACGGTGTTAAGCAGCACCTATTGAAGGAGCTATACTGCAAAGAACATGAACATCTACAGTAACACAGATGGAGGTGAAAGCAGCTGCCGTTATCAAGTGTACTGTACTCCTTCTGTGTTGCTCTTATGAAACTGTTTAGACCCCACCTGGTAATTAGTGTACTGATAGCGAGGTATAAGATTAGATTATTCCTTAGCAACGCAATCTTTTTTTTCTTTTCTTTTTCTTTTTCCTTCTTTATTCTTATCCTTTCTCTTACCCACGAGAGAACAGGTGGTTGTAAATTGCCCAGAACACC TTTTTCGTAATAGTCCAT ]
[-] EMBL CB618812 [ TCGACTTCGGGAAACCTTCAAAAGGCCGATTCTTAGTTCTGAACCTGCAATTGCTGTACACCAAATACAACCAAATGATCATTTTGTTATATTTGCTTCTGATGGTCTATGGGAGCACCTCAGTAATCAGGAAGCAGTTGACCTTGTCCAAAATAATCCTCGTAATGGGATTGCTCGAAGACTAGTTAAAGTCGCAATGCAAGAAGCAGCCAAGAAGAGGGAGATGAGATACTCAGACCTCAAGAAAATTGATCGTGGCGTGAGGCGTCATTTCCACGACGATATAACCGTCATTGTGGTGTTTCTTGATTCGAATGCCATAAGCAAAGCAAACT GGAGCCGAGGTCCTTCTGTTTCCCTG AGAGGGGGTGGTGT CACCCT CCCTGCAAATTCCCTTGCGCCTTTCTCGGC T CCCACGGTGTTAAGCAGCACCTATTGAAGGAGCTATACTGCAAAGAACATGAACATCTACAGTAACACAGATGGAGGTGAAAGCAGCTGCCGTTATCAAGTGTACTGTACTCCTTCTGTGTTGCTCTTATGAAACTGTTTAGACCCCACCTGGTAATTAGTGTACTGATAGCGAGGTATAAGATTAGATTATTCCTTAGCAACGCAATCTTTTTTTTCTTTTCTTTTTCTTTTTCCTTCTTTATTCTTATCCTTTCTCTTACCCACGAGAGAACAGGTGGTTGTAAATTGCCCAGAACACC TTTTTCGTAATAGTCCAT ]
[+] EMBL CB096321 [ CAACCAAATGATCATTTTGTTATATTTGCTTCTGATGGTCTATGGGAGCACCTCAGTAATCAGGAAGCAGTTGACCTTGTCCAAAATAATCCTCGTAATGGGATTGCTCGAAGACTAGTTAAAGTCGCAATGCAAGAAGCAGCCAAGAAGAGGGAGATGAGATACTCAGACCTCAAGAAAATTGATCGTGGCGTGAGGCGTCATTTCCACGACGATATAACCGTCATTGTGGTGTTTCTTGATTCGAATGCCATAAGCAAAGCAAACT GGAGCCGAGGTCCTTCTGTTTCCCTG AGAGGGGGTGGTGT CACCCT CCCTGCAAATTCCCTTGCGCCTTTCTCGGC T CCCATGGTGTTAAGCAGCACCTATTGAAGGAGCTATACTGCAAAGAACATGAACATCTACAGTAACACAGATGGAGGTGAAAGCAGCTGCCGTTATCAAGTGTACTGTACTCCTTCTGTGTTGCTCTTATGAAACTGTTTAGACCCCACCTGGTAATTAGTGTACTGATAGCGAGGTATAAGATTAGATTATCCCTTAGCAACGCAATCTTTTTTTTCTTTTCTTTTTCTTTTTCCTTCTTTATTCTTATCCTTTCTCTTACCCACGAGAGAACAGGTGGTTGTAAATTGCCCAGAACACCTTTTTTCGTAATAGTCCATCATATCCCCTTTTTTCG ]
[-] EMBL CA759036 [ TTGGCTTCTGATGGTCTATGGGAGCACCTCAGTAATCAGGAAGCAGTTGACCTAGTCCAAAATAATCCTGGTAATGGGACTGCTCGAAGACTAGTTAAATTCGCAATGCAAGAAGCAGCCAAGAAGAGGGAGATGAGATACTCAGACCTCAAGAAAATTGATCGTGGCGTGTGGCGTCATTTTCGCGACGATATACCCGTCATTGTGGTGTTTCTTGATTCGAATGCCATAATCAAAGCAAGCT GGAGCCGAGGTCCTTCTGTTTCCCTA ACAGGGGGTGGTGT CACCCT CCCAGCAAATTCCCTTGCGCCTTTTTCGGC T CCCACGGTGTTAAGCAGCTCCTATTGAAGGAGCTATGCTGCAAAGAACATGACCATCTGCAGTAACACAGATGGAGGTGAAAGCAGCTTCCGTTATCAAGTGTGCTGTACTCCTTGTGTGTTGCTCTTATGAAACTGTTTAGACCCCACCTGGTAATTAGTGTTTTGATAGCGAGGTATAAGATTAGATTATTCCTTAGCAGCGCAATCTTTTTGTTCTTTTCTTTTTCTTTTTCCTTCTATATTCTTATCCTTTCTCTTACCCACGAGAGAACAGGTGGTTGTAAATTGCCCAGAACACC TTTTTTGTAATAGTCCATCATATCCCCTTTTTTCGTGTTGATAATGAAGGCATTGTTAAAAAAAAAAAAAAA ]
[-] EMBL CB964933 [ ATGGGATTGCTCGAAGACTAGTTAAAGTCGCAATGCAAGAAGCAGCCAAGAAGAGGGAGATGAGATACTCAGACCTCAAGAAAATTGATCGTGGCGTGAGGCGTCATTTCCACGACGATATAACCGTCATTGTGGTGTTTCTTGATTCGAATGCCATAAGCAAAGCAAACT GGAGCCGAGGTCCTTCTGTTTCCCTG AGAGGGGGTGGTGT CACCCT CCCTGCAAATTCCCTTGCGCCTTTCTCGGC T CCCACGGTGTTAAGCAGCACCTATTGAAGGAGCTATACTGCAAAGAACATGAACATCTACAGTAACACAGATGGAGGTGAAAGCAGCTGCCGTTATCAAGTGTACTGTACTCCTTCTGTGTTGCTCTTATGAAACTGTTTAGACCCCACCTGGTAATTAGTGTACTGATAGCGAGGTATAAGATTAGATTATTCCTTAGCAACGCAATCTTTTTTTTCTTTTCTTTTTCTTTTTCCTTCTTTATTCTTATCCTTTCTCTTACCCACGAGAGAACAGGTGGTTGTAAATTGCCCAGAACACC TTTTTCGTAATAGTCCATCATATCCCCTTTTTT ]
[+] EMBL BI808263 [ AATGCCCTTAACAA CCAACT GGAGCCGAGGTCCTTCTGTTTCCCTG AGAGGGGGTGGTGTCCACCCTCCCCTGCCAATTCCCTTGCGCCTTTCTCGGCGT CCCACGGTGTTAA CAGCACCTATTGAAGGAGCTATACTGCCAAGAACATGAACATCTACAGTAACACAGATGGAGGTGAAAGCCGCTGCCGTTATCAAGTGTACTGTACTCCTTCTGTGTTGCTCTTATGAAACTGTTTAGACCCCCCCTGGTAATTAGTGTACTGATAGCGAGGTATAAGATTAGATTATTCCTTAGCCACGCCATCTTTTTTTTCTTTTCTTTTTCTTTTTCCTTCTTTATTCTTATCCTTTCTCTTACCCCCGAGAGAACCGGTGGTTGTAAATTGCCCAGAACACC TTTTTCGTAATAGTCCATCATATCCCCTTTTTTCGTGTTGATAATGAAGGCCTTGCTAAAAGTTTTAATGTTGGGTAAAAAAAAAA]
[+] EMBL C98840 [ ACTGGGAGCCGAGGTCCTTCTGTTTCCCTGNAGAGGGGGTGGTGT CACCCT CCCTGCAAA TCCCTTGCGCCTTTCTCAAC TCCCCACGGTGTTAAGCAGCACCTATTG AGGAGCTATACTGCAAAGAACATGAACATCTACAGTAACACAGATGGAGGTGAAAGCAGCTGCCGTTATCAACTGTACTGTACTCCTTCTGTGTTGCTCTTATGAAACTGTTTAGACCCCACCTGGTAATTAGTGTACTGATAGCGAGGTATAAGATTAGATTATTCCTTAGCAACGCAATCTTTTTTTTCTTTTCTTTTTCTTTTTCCTTCTTTATTCTTATCCTTTCTCTTACCCACGAGAGAACAGGTGGTTGTAAATTGCCCAGAACACC TTTTTCGTAATAGTCCATCATATCCCCTTTTTTCGTGTTGATAATGAAGGNATTGCTAAAAA ]
consensusID : consensus_15327#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 468 fasta sequence
[CGAGGTCCTTCTGTTTCCCTGAGAGGGGGTGGTGTCACCCTCCCTGCAAAATTCCCTTGCGCCTTTCTCGGCTCCCACGGTGTTAAGCAGCACCCTATTTGAAGGAGCTATACCTGCACAAGAACCANTGAACCACTGCTACCAGTGACACCAGATTGGAGGTGAAAGCACGCTGCCGTTATCCACAGTGTACCTGTACCTCCTTCTGTGTTGCTCTTATGAAACTGTTTAGACCCCACCCTGGTGAATTAGTGGTACTGATAGCGAGGTATAAGATTGAGATTATGTCCTTATGCAACGCAATGCTTTGTTGTTTGCTGTTGTCTGTGTTTCTGTTTTCCTGTGCTGTTGATTGCTTGATGCCTGTTGCTGCTTGACCCACGAGAGAACAGGTGGTTGTAAATTGCCCAGAACACCTTTTTCGTAATAGTCCATCATATCCCCTTTTTTCGTGTTGATAAAAAAAAA]
[+] EMBL BM421343 [CGAGGTCCTTCTGTTTCCCTGAGAGGGGGTGGTGTCACCCTCCCTGCAAAATTCCCTTGCGCCTTTCTCGGCTCCCACGGTGTTAAGCAGCACCCTATTTGAAGGAGCTATACCTGCACAAGAACCANTGAACCACTGCTACCAGTGACACCAGATTGGAGGTGAAAGCACGCTGCCGTTATCCACAGTGTACCTGTACCTCCTTCTGTGTTGCTCTTATGAAACTGTTTAGACCCCACCCTGGTGAATTAGTGGTACTGATAGCGAGGTATAAGATTGAGATTATGTCCTTATGCAACGCAATGCTTTGTTGTTTGCTGTTGTCTGTGTTTCTGTTTTCCTGTGCTGTTGATTGCTTGATGCCTGTTGCTGCTTGACCCACGAGAGAACAGGTGGTTGTAAATTGCCCAGAACACCTTTTTCGTAATAGTCCATCATATCCCCTTTTTTCGTGTTGATAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15327#0 TACACCGGCCACCACCAGTCACACAACACAACAATTTAGGATTGGTAGAGCCCATCTCTG 60
consensus_15327#1 ------------------------------------------------------------
consensus_15327#0 AGCCCTGCCTTGCTGGCCCTGAGCTCTCTCTTGCTGCTTCTTTTAATGGGTTTTTTGTCT 120
consensus_15327#1 ------------------------------------------------------------
consensus_15327#0 CCTTGGATTTGTGCTTGTGCTCACCTGGGCGTGGAGTTCTCTGCATGAGAGAGAGAGAGA 180
consensus_15327#1 ------------------------------------------------------------
consensus_15327#0 GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGACACCTCTGAGCTGTTTCTT 240
consensus_15327#1 ------------------------------------------------------------
consensus_15327#0 CAACAAGTCTTCAAGATTTGGCAGAGCTACTGAGAGAGAGCAAAGGAGAGGAGGGCTATA 300
consensus_15327#1 ------------------------------------------------------------
consensus_15327#0 GGGAAAAAAGTATTTTTTTTTGGGGGTACAAATTTCTTGCTTGATTCTCTTCGATCCCGG 360
consensus_15327#1 ------------------------------------------------------------
consensus_15327#0 AGAGCAGCCACCAGTTGAGGCACAATCCTTGCTGTTCGTGTGCCTGGGTTTGATAGCTGT 420
consensus_15327#1 ------------------------------------------------------------
consensus_15327#0 CCAGATCTGCGGCACTTGCCCGATAGATTCCAAGAATCCGAGCACAAACTCTCGTTTGCT 480
consensus_15327#1 ------------------------------------------------------------
consensus_15327#0 GCGAAAAGATAGTAGGTGGAATAAGTTGAGCAATACGGTGGAGATAAGAGAGATAGCTTG 540
consensus_15327#1 ------------------------------------------------------------
consensus_15327#0 TGTCTCGTGATGCCATCAAGAAACTGCGTGGAGGAGGAGGAGAGTGTGAGATGAAGGATG 600
consensus_15327#1 ------------------------------------------------------------
consensus_15327#0 CTGGCCGCGGTGATGGACTACTTCAGGTCCTGCTGGGGCCCGCGATCTCCGGCCGGTCAC 660
consensus_15327#1 ------------------------------------------------------------
consensus_15327#0 CGGGTCAGGGGCTCCGACGTCGCCGGCCGGCAAGACGGGCTCCTGTGGTATAAGGACGCC 720
consensus_15327#1 ------------------------------------------------------------
consensus_15327#0 GGCCAGCTGGTCACCGGGGAGTTCTCCATGGCTGTGGTTCAGGCCAACAACCTGCTGGAG 780
consensus_15327#1 ------------------------------------------------------------
consensus_15327#0 GACCAGAGCCAGGTGGAGTCCGGCGCGCTCTCCATGGCCGAGCCCGGCCCTCAGGGCACC 840
consensus_15327#1 ------------------------------------------------------------
consensus_15327#0 TTCATCGGCGTCTATGATGGCCACGGCGGCCCGGAGACGGCGCGGTTCATCAATGACCAC 900
consensus_15327#1 ------------------------------------------------------------
consensus_15327#0 ATGTTCCACCATCTCAGGAGATTTGCAACTGAGCACAAGTGCATGTCAACCGATGTGATT 960
consensus_15327#1 ------------------------------------------------------------
consensus_15327#0 CGGAAAGCTTTCCAAGCAACTGAGGAGGGCTTCCTTTCTCTAGTCAGTAAGCAATGGTCC 1020
consensus_15327#1 ------------------------------------------------------------
consensus_15327#0 TTGAAGCCTCAGATTGCAGCAGTAGGATCTTGCTGCCTAGTTGGTGTTATTTGCTCAGGG 1080
consensus_15327#1 ------------------------------------------------------------
consensus_15327#0 ACTCTCTATGTTGCGAACCTTGGAGATTCGCGTGCTGTTCTTGGGAGATTTGTCAAGTCC 1140
consensus_15327#1 ------------------------------------------------------------
consensus_15327#0 ACTGGGGAAGTTGTGGCAACGCAGCTATCATCAGAACACAACGCGTGCTATGAGGAAGTT 1200
consensus_15327#1 ------------------------------------------------------------
consensus_15327#0 AGACAAGAATTGCAGGCATCACATCCTGATGATCCACAAATTGTTGTCCTAAAACACAAT 1260
consensus_15327#1 ------------------------------------------------------------
consensus_15327#0 GTTTGGCGTGTCAAGGGCCTCATCCAGATCTCAAGATCTATTGGCGATGTATATCTAAAA 1320
consensus_15327#1 ------------------------------------------------------------
consensus_15327#0 AGACCAGAATATAACAGAGAACCTCTTCACAGCAAGTTTCGACTTCGGGAAACCTTCAAA 1380
consensus_15327#1 ------------------------------------------------------------
consensus_15327#0 AGGCCGATTCTTAGTTCTGAACCTGCAATTGCTGTACACCAAATACAACCAAATGATCAT 1440
consensus_15327#1 ------------------------------------------------------------
consensus_15327#0 TTTGTTATATTTGCTTCTGATGGTCTATGGGAGCACCTCAGTAATCAGGAAGCAGTTGAC 1500
consensus_15327#1 ------------------------------------------------------------
consensus_15327#0 CTTGTCCAAAATAATCCTCGTAATGGGATTGCTCGAAGACTAGTTAAAGTCGCAATGCAA 1560
consensus_15327#1 ------------------------------------------------------------
consensus_15327#0 GAAGCAGCCAAGAAGAGGGAGATGAGATACTCAGACCTCAAGAAAATTGATCGTGGCGTG 1620
consensus_15327#1 ------------------------------------------------------------
consensus_15327#0 AGGCGTCATTTCCACGACGATATAACCGTCATTGTGGTGTTTCTTGATTCGAATGCCATA 1680
consensus_15327#1 ------------------------------------------------------------
consensus_15327#0 AGCAAAGCAAACTGGAGCCGAGGTCCTTCTGTTTCCCTGAGAGGGGGTGGTGTCACCCTC 1740
consensus_15327#1 ------------------CGAGGTCCTTCTGTTTCCCTGAGAGGGGGTGGTGTCACCCTC 42
******************************************
consensus_15327#0 CCTGCAAA-TTCCCTTGCGCCTTTCTCGGCTCCCACGGTGTTAAGCAGCACCTA--TTGA 1797
consensus_15327#1 CCTGCAAAATTCCCTTGCGCCTTTCTCGGCTCCCACGGTGTTAAGCAGCACCCTATTTGA 102
******** ******************************************* ****
consensus_15327#0 AGGAGCTATAC-TGCA-AAGAAC--ATGAACATCTAC----AGTAACAC-AGAT-GGAGG 1847
consensus_15327#1 AGGAGCTATACCTGCACAAGAACCANTGAACCACTGCTACCAGTGACACCAGATTGGAGG 162
*********** **** ****** ***** ** * *** **** **** *****
consensus_15327#0 TGAAAGCA-GCTGCCGTTATCAA--GTGTAC-TGTAC-TCCTTCTGTGTTGCTCTTATGA 1902
consensus_15327#1 TGAAAGCACGCTGCCGTTATCCACAGTGTACCTGTACCTCCTTCTGTGTTGCTCTTATGA 222
******** ************ * ****** ***** **********************
consensus_15327#0 AACTGTTTAGACCCCACC-TGGT-AATTAGTG-TACTGATAGCGAGGTATAAGATT-AGA 1958
consensus_15327#1 AACTGTTTAGACCCCACCCTGGTGAATTAGTGGTACTGATAGCGAGGTATAAGATTGAGA 282
****************** **** ******** *********************** ***
consensus_15327#0 TTAT-TCCTTA-GCAACGCAATCTTTT----TTTTCTTTTCTTTTTCTTTTTCCTTCTTT 2012
consensus_15327#1 TTATGTCCTTATGCAACGCAATGCTTTGTTGTTTGCTGTTGTCTGTGTTTCTGTTTTCCT 342
**** ****** ********** *** *** ** ** * * * *** * ** *
consensus_15327#0 ATTCTTATCCTTTCTC----------------TTACCCACGAGAGAACAGGTGGTTGTAA 2056
consensus_15327#1 GTGCTGTTGATTGCTTGATGCCTGTTGCTGCTTGACCCACGAGAGAACAGGTGGTTGTAA 402
* ** * ** ** * **************************
consensus_15327#0 ATTGCCCAGAACACCTTTTTCGTAATAGTCCATCATATCCCCTTTTTTCGTGTTGATAAT 2116
consensus_15327#1 ATTGCCCAGAACACCTTTTTCGTAATAGTCCATCATATCCCCTTTTTTCGTGTTGATAAA 462
***********************************************************
consensus_15327#0 GAAGGCATTGCTAAAAAAAAAAAAAAAGGGTAAAAAAAAAA 2157
consensus_15327#1 AAAAAA----------------------------------- 468
**
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||