These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15333#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 2292 fasta sequence [ACCGATCTCTCTAAACCCAAATACGCAACAAATACTCAATCGTCACATCTTAAAAAACAAAGAAAAAGGAAGAGAGAGAGAGAGGGAAAACAAAAAAGAAAAGAAAAATCAATTCCCAACCTTGCTGCTACAAATGCCTCAGGCTTAGCAACTCGACCTCCTCCCCCCTTCTCCCCTTCCTCCCTTCTTTGACTTCCCCTTTCCTCCTCCGTGCGCACGCTCTCCTGATTCATACAGCATTTCGTCGGGGATGACGTCGACGGCGTACTCCCGGCCGTCGAAGCTGCCGGGCGGCGGCAACGGCAGCGACCGCAGGCTGCCGCCGCGGCTGATGAGGGGCCTCACCACCAAGATCGAGCCCAAGAAGCTCGGCGTCGGCCTCCTCGCCGGCTGCTGCCTCGCGCTCCTCACCTACGTCTCCCTTGCCAAGCTCTTCGCAATCTACTCCCCTGTGTTCGCCAGCACAGCCAGCACATCCGCTCTGATGCAGGACTCGCCGCCATCCTCGCCGGAGACGGGACCCATTCCGCCCCAAGAAACTGCAGCTGGCGCCGGAAACAATGACAGCACTGTGGACCCCGTCGATCTCCCTGAGGACAAGTCGCTGGTGGAGGCGCAGCCTCAAGAACCCGGCTTCCCCTCGGCGGAATCTCAGGAGCCTGGCTTGCCGGCGGCGCTCTCGAGGAAGGAGGATGATGCGGAGAGGGCGGCGGCGGCGGCGGCCTCGGAGATAAAGCAATCCGAGAAGAAGAACGGCGTGGCGGCGGGTGGTGATACCAAGATAAAGTGCGACGAGAACGGCGTGGACGAGGGCTTCCCGTACGCGCGGCCGTCGGTTTGCGAGCTGTACGGCGACGTCCGCGTCAGCCCCAAGCAGAAGACCATTTACGTCGTGAACCCGTCGGGCGCCGGCGGCTTCGACGAGAACGGCGAGAAGCGGCTCCGGCCCTACGCCCGCAAGGACGATTTCCTCCTCCCGGGCGTGGTGGAGGTGACTATCAAGTCCGTGCCCTCCGAGGCGGCGGCCCCCAAGTGCACGAAGCAGCACGCCGTCCCCGCCGTGGTGTTCTCCGTGGCCGGGTACACGGACAACTTCTTCCACGACATGACCGATGCCATGATCCCGCTATTCCTGACGACGGCGCACCTCAAGGGCGAGGTCCAGATCCTCATCACCAACTACAAGCCGTGGTGGGTGCAGAAGTACACGCCGCTGCTCCGCAAGCTGTCCAACTACGACGTCATCAACTTCGACGAGGACGCCGGCGTGCACTGCTTCCCGCAGGGGTACCTCGGTCTGTACCGCGACCGCGACCTCATCATCTCCCCGCACCCGACCCGCAACCCGCGCAACTACACCATGGTGGACTACAACCGCTTCCTCCGCGACGCTCTGGAGCTCCGGCGCGACCGCCCGTCGGTGCTGGGCGAGGAGCCCGGGATGCGGCCGCGGATGCTGATCATCTCCCGCGCCGGCACGCGCAAGCTGCTGAACCTCGAGGAGGTGGCCGCGGCCGCGACGGAGCTTGGTTTCAACGTGACGGTGGCGGAGGCCGGTGCTGACGTGCCCGCGTTCGCGGCGCTGGTGAACTCGGCGGACGTGCTGCTGGCCGTGCACGGCGCCGGGCTGACGAACCAGATCTTCCTCCCGGCGGAGGCCGTGGTGGTGCAGATCGTGCCGTGGGGGAACATGGACTGGATGGCGACCAACTTTTACGGGCAGCCGGCGAGGGACATGCAGCTCCGGTACGTGGAGTACTACGTCGGCGAGGAGGAGACGAGCCTGAAGCACAACTACTCGCGAGAT-CACATGGTGTTCAAGGACCCCAAGGCGCTCCACGCACAGGGATGGCAGACACTCGCCGCGACTATCATGAAGCAGGACGTCGAGGTCAACCTCACCAGGTTCCGGCCAATCCTGCTGCAGGCGCTCGACAGGCTGCAGCAGTAACTCGTCTATCCCAATAATCGCAGGCAGCTCATGGCACACATCAATGTATATGCCGGGACGAGACGACACGACGAGGAACAAGAACGGATACTAGTATATTGTACTGCTGCTTGAAAGAGATGATGATGATCTTAACCGGAGGAGAACCATCAGTTGTTGGCGAGGC-GGTGGAAGCTTTTCGCATATTGGTAATTGGTTGGGTTGTCCATTTTGGGTTTGTAACAATTTGCATAGGCATTACACACCAAAGATGTTCGATTTTTTTGTTCTTCTTACACTTCTTCACTTCGCCAGCCCATTCAACACTATACATTCTTTTCTACTAATACGGGAGCCAACTA] [+] EMBL OSS12712A [ACCGATCTCTCTAAACCCAAATACGCAACAAATACTCAATCGTCACATCTTAAAAAACAAAGAAAAAGGAAGAGAGAGAGAGAGGGAAAACAAAAAAGAAAAGAAAAATCAATTCCCAACCTTGCTGCTACAAATGCCTCAGGCTTAGCAACTCGACCTCCTCCCCCCTTCTCCCCTTCCTCCCTTCTTTGACTTCCCCTTTCCTCCTCCGTGCGCACGCTCTCCTGATTCATACAGCATTTCGTCGGGGATGACGTCGACGGCGTACTCCCGGCCGTCGAAGCTGCCGGGCGGCGG AAC ] [+] EMBL AK070014 [ TTCTCCCCTTCCTCCCTTCTTTGACTTCCCCTTTCCTCCTCCGTGCGCACGCTCTCCTGATTCATACAGCATTTCGTCGGGGATGACGTCGACGGCGTACTCCCGGCCGTCGAAGCTGCCGGGCGGCGGCAACGGCAGCGACCGCAGGCTGCCGCCGCGGCTGATGAGGGGCCTCACCACCAAGATCGAGCCCAAGAAGCTCGGCGTCGGCCTCCTCGCCGGCTGCTGCCTCGCGCTCCTCACCTACGTCTCCCTTGCCAAGCTCTTCGCAATCTACTCCCCTGTGTTCGCCAGCACAGCCAGCACATCCGCTCTGATGCAGGACTCGCCGCCATCCTCGCCGGAGACGGGACCCATTCCGCCCCAAGAAACTGCAGCTGGCGCCGGAAACAATGACAGCACTGTGGACCCCGTCGATCTCCCTGAGGACAAGTCGCTGGTGGAGGCGCAGCCTCAAGAACCCGGCTTCCCCTCGGCGGAATCTCAGGAGCCTGGCTTGCCGGCGGCGCTCTCGAGGAAGGAGGATGATGCGGAGAGGGCGGCGGCGGCGGCGGCCTCGGAGATAAAGCAATCCGAGAAGAAGAACGGCGTGGCGGCGGGTGGTGATACCAAGATAAAGTGCGACGAGAACGGCGTGGACGAGGGCTTCCCGTACGCGCGGCCGTCGGTTTGCGAGCTGTACGGCGACGTCCGCGTCAGCCCCAAGCAGAAGACCATTTACGTCGTGAACCCGTCGGGCGCCGGCGGCTTCGACGAGAACGGCGAGAAGCGGCTCCGGCCCTACGCCCGCAAGGACGATTTCCTCCTCCCGGGCGTGGTGGAGGTGACTATCAAGTCCGTGCCCTCCGAGGCGGCGGCCCCCAAGTGCACGAAGCAGCACGCCGTCCCCGCCGTGGTGTTCTCCGTGGCCGGGTACACGGACAACTTCTTCCACGACATGACCGATGCCATGATCCCGCTATTCCTGACGACGGCGCACCTCAAGGGCGAGGTCCAGATCCTCATCACCAACTACAAGCCGTGGTGGGTGCAGAAGTACACGCCGCTGCTCCGCAAGCTGTCCAACTACGACGTCATCAACTTCGACGAGGACGCCGGCGTGCACTGCTTCCCGCAGGGGTACCTCGGTCTGTACCGCGACCGCGACCTCATCATCTCCCCGCACCCGACCCGCAACCCGCGCAACTACACCATGGTGGACTACAACCGCTTCCTCCGCGACGCTCTGGAGCTCCGGCGCGACCGCCCGTCGGTGCTGGGCGAGGAGCCCGGGATGCGGCCGCGGATGCTGATCATCTCCCGCGCCGGCACGCGCAAGCTGCTGAACCTCGAGGAGGTGGCCGCGGCCGCGACGGAGCTTGGTTTCAACGTGACGGTGGCGGAGGCCGGTGCTGACGTGCCCGCGTTCGCGGCGCTGGTGAACTCGGCGGACGTGCTGCTGGCCGTGCACGGCGCCGGGCTGACGAACCAGATCTTCCTCCCGGCGGAGGCCGTGGTGGTGCAGATCGTGCCGTGGGGGAACATGGACTGGATGGCGA CAACTTTTACGGGCAGCCGGCGAGGGACATGCAGCTCCGGTACGTGGAGTACTACGTCGGCGAGGAGGAGACGAGCCTGAAGCACAACTACTCGCGAGAT CACATGGTGTTCAAGGACCCCAAGGCGCTCCACGCACAGGGATGGCAGACACTCGCCGCGACTATCATGAAGCAGGACGTCGAGGTCAACCTCACCAGGTTCCGGCCAATCCTGCTGCAGGCGCTCGACAGGCTGCAGCAGTAACTCGTCTATCCCAATAATCGCAGGCAGCTCATGGCACACATCAATGTATATGCCGGGACGAGACGACACGACGAGGAACAAGAACGGATACTAGTATATTGTACTGCTGCTTGAAAGAGATGATGATGATCTTAACCGGAGGAGAACCATCAGTTGTTGGCGAGGC GGTGGAAGCTTTTCGCATATTGGTAATTGGTTGGGTTGTCCATTTTGGGTTTGTAACAATTTGCATAGGCATTACACACCAAAGATGTTCGATTTTTTTGTTCTTCTTACACTTCTTCACTTCGCCAGCCCATTCAACACTATAC ] [+] EMBL OSR26631A [ TTTGACTTCCCCTTTCCTCCTCCGTGCGCACGCTCTCCTGATTCATACAGCATTTCGTCGGGGATGACGTCGACGGCGTACTCCCGGCCGTCGAAGCTGCCGGGCGGCGGCAACGGCAGCGACCGCAGGCTGCCGCCGCGGCTGATGAGGGGCCTCACCACCAAGATCGAGCCCAAGAAGCTCGGCGTCGGCCTCCTCGCCGGCTGCTGCCTCGCGCTCCTCACCTACGTCTCCCTTGCCAAGCTCTTCGCAATCTACTCCCCTGTGTTCGCCAGCACAGCCAACACATCCGCTCTG ] [+] EMBL AU096227 [ GACATGACCGATGCCATGATCCCGCTATTCCTGACGACGGCGCACCTCAAGGGCGAGGTCCAGATCCTCATCACCAACTACAAGCCGTGGTGGGTGCAGAAGTACACGCCGNTGCTCCGCAAGCTGTCCAACTACGACGTCATCAACTTCGACGAGGACGCCGGCGTGCACTGCTTCCCGCAGGGGTACCTCGGTCTGTACCGCGACCGCGACCTCATCATCTCCCCGCACCCGACCCGCAACCCGCGCAACTACACCATGGTGGACTACAACCGCTTCCTCCGCGACGCTCTGGAGCTCCGGCGCGACCGCCCGTCGGTGCTGGGCGAGGAGCCCGGGATGCG ] [+] EMBL AU071106 [ ctnaagTCCCGCTATTCCTGACGACGGCGCACCTCAAGGGCGAGGTCCAGATCCTCATCACCAACTACAAGCCGTGGTGGGTGCAGAAGTACACGCCGCTGCTCCGCAAGCTGTCCAACTACGACGTCATCAACTTCGACGAGGACGCCGGCGTGCACTGCTTCCCGCAGGGTNACCTCGGTCTGTACCGCGACCGCGACCTCATCATCTCCCCGCACCCGACCCGCAACCCGCGCAACTACACCATGGTGGACTACAACCGCTTCCTCCGCGACGCTCTGGAGCTCCGGCGCGACCGCCCGTCGGTGCTGGGCGAGG ] [+] EMBL AU108936 [ ATTCCTGACGACGGCGCACCTCAAGGGCGAGGTCCAGATCCTCATCACCAACTACAAGCCGTGGTGGGTGCAGAAGTACACGCCGCTGCTCCGCAAGCTGTCCAACTACGACGTCATCAACTTCGACGAGGACGCCGGCGTGCACTGCTTCCCGCAGGGGTACCTCGGTCTGTACCGCGACCGCGACCTCATCATCTCCCCGCACCCGACCCGCAACCCGCGCAACTACACCATGGTGGACTACAACCGCTTCCTNCGCGACGCTCTGGAGCTCCGGCGCGACCGCCCGTCGGTGCTGGGCGAGGAGCCCG ] [+] EMBL CB000698 [ CCGTGGGGGAACATGGACTGGATGGCGACCAACTTTTACGGGCAGCCGGCGAGGGACATGCAGCTCCGGTACGTGGAGTACTACGTCGGCGAGGAGGAGACGAGCCTGAAGCACAACTACTCGCGAGAT CACATGGTGTTCAAGGACCCCAAGGCGCTCCACGCACAGGGATGGCAGACACTCGCCGCGACTATCATGAAGCAGGACGTCGAGGTCAACCTCACCAGGTTCCGGCCAATCCTGCTGCAGGCGCTCGACAGGCTGCAGCAGTAACTCGTCTATCCCAATAATCGCAGGCAGCTCATGGCACACATCAATGTATATGCCGGGACGAGACGACACGACGAGGAACAAGAACGGATACTAGTATATTGTACTGCTGCTTGAAAGAGATGATGATGATCTTAACCGGAGGAGAACCATCAGTTGTTGGCGAGGC GGTGGAAGCTTTTCGCATATTGGTAATTGGTTGGGTTGTCCATTTTGGGTTTGTAACAATTTGCATAGGCATTACACACCAAAGATGTTCGATTTTTTTGTTCTTCTTACACTTCTTCACTTCGCCAGCCCATTCAACACTATACATTCTTTTCTACTAATACGGGAGCCAACTA] [+] EMBL CA999464 [ CCGTGGGGGAACATGGACTGGATGGCGACCAACTTTTACGGGCAGCCGGCGAGGGACATGCAGCTCCGGTACGTGGAGTACTACGTCGGCGAGGAGGAGACGAGCCTGAAGCACAACTACTCGCGAGAT CACATGGTGTTCAAGGACCCCAAGGCGCTCCACGCACAGGGATGGCAGACACTCGCCGCGACTATCATGAAGCAGGACGTCGAGGTCAACCTCACCAGGTTCCGGCCAATCCTGCTGCAGGCGCTCGACAGGCTGCAGCAGTAACTCGTCTATCCCAATAATCGCAGGCAGCTCATGGCACACATCAATGTATATGCCGGGACGAGACGACACGACGAGGAACAAGAACGGATACTAGTATATTGTACTGCTGCTTGAAAGAGATGATGATGATCTTAACCGGAGGAGAACCATCAGTTGTTGGCGAGGC GGTGGAAGCTTTTCGCATATTGGTAATTGGTTGGGTTGTCCATTTTGGGTTTGTAACAATTTGCATAGGCATTACACACCAAAGATGTTCGATTTTTTTGTTCTTCTTACACTTCTTCACTTCGCCAGCCCATTCA ] [-] EMBL OSA420727 [ GAAGCACAACTACTCGCGAGATGCACATGGTGTTCAAGGACCCCAAGGCGCTCCACGCGCAGGGATGGCAGACACTCGCCGCGACTATCATGAAGCAGGACATCGAGGTCAACCTCACCAGGTTCCGGCCAATCCTGCTGCAGGCGCTCGACAGGCTGCAGCAGTAACTCGTCTATCCCAATAATCGCAGGCAGCTCATGGCACACATCAATGTATATGCCGGGACGAGACGACACGACGAGGAACAAGAACGGATACTAGTATATTGTACTGCTGCTTGAAAGAGATGATGATGATCTTAACCGGAGGAGAACCATCAGTTGTTGGCGAGGCAGGTGGAAGCTTTTCGCATATTGGTAATTGGTTGGGTTGTCCATTTT GGTTTGTAACAATTTGTATAGGCATTACACACCAAAGATGTTCGATTTTTTTGTTCTTCTTGCACTCCTTCACTTCGCCAGCCCATTCAACACTATACATTCTTTTCTACTA ] [-] EMBL CB965606 [ GCGCTCCACGCGCAGGGATGGCAGACACTCGCCGCGACTATCATGAAGCAGGACGTCGAGGTCAACCTCACCAGGTTCCGGCCAATCCTGCTGCAGGCGCTCGACAGGCTGCAGCAGTAACTCGTCTATCCCAATAATCGCAGGCAGCTCATGGCACACATCAATGTATATGCCGGGACGAGACGACACGACGAGGAACAAGAACGGATACTAGTATATTGTACTGCTGCTTGAAAGAGATGATGATGATCTTAACCGGAGGAGAACCATCAGTTGTTGGCGAGGC GGTGGAAGCTTTTCGCATATTGGTAATTGGTTGGGTTGTCCATTTT GGTTTGTAACAATTTGCATAGGCATTACACACCAAAGATGTTCGATTTTTTTGTTCTTCTTGCACTTCTTCACTTCGCCAGCCCATTCAACACTATACATTC ] [+] EMBL AU069808 [ GGTTCCGGCCAATCCTGCTGCAGGCGCTCGANAGGCTGCAGCAGTAACTCGTCTATCCCAATAATCGCAGGCAGCTCATGGCACACATCAATGTATATGCCGGGACGAGACGACACGACGAGGAACAAGAACGGATACTAGTATATTGTACTGCTGCTTGAAAGAGATGATGATGATCTTAACCGGAGGAGAACCATCAGTTGTTGGCGAGGC GGTGGAAGCTTTTCGCATATTGGTAATTGGTTGGGTTGTCCATTTTGGGTTTGTAACAATTTGCATAGGCATTACACACCAAAaa ] consensusID : consensus_15333#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 785 fasta sequence [GCTAAGCCCAAGATGTTGATGATCGAGAGGAAGGGCACCCGCAAGCTGCTCAACCTGCGCGACGTGGCCGCGCTCTGCGAGGACCTCGGGTTTGCGGTGACCGTGGCGGAGGCCGGCGCGGACGTGCGCGGGTTCGCCGAGAAGGTGAACGCGGCGGACGTGCTGCTGGCGGTGCACGGCGCCGGGCTGACAAACCAGATCTTCCTCCCAACGGGCGCCGTGCTCGTACAGATCGTGCCGTGGGGCAAGATGGACTGGATGGCCACAAACTTCTACGGGCAGCCGGCGCGCGACATGCGGCTCCGGTACGTCGAGTATTACGTCTCGGAGGAGGAGACGACGCTCAAGGACAAGTACCCAA-GG-GACCACTACGTGTTCAAGGACCCCATGGCCATCCAC-GCGCAGGG-CTGGCCGGCGCTCGCCGAGATCGTCATGAAG-CAGGACGTCACGGTGAATGTGACAAGATTCAAGCCGTTCCTGCTCAAGGCGCTCGACGAATTGCAGGAATAGGAGGAGCG-CCGTTTGATTGGTTTTGTGTGGGCGTGGCTCGTCCATAAGTGGGATGTAGGATGTTTTGATTTTATATTTATATTGTAATATTGAGTTAATCAATGTAATTTATTTCGTTGGAGATTCATGGTGTTTGTCATTCAGAAAAATATGATTTCTTCTTTTTGGTTGTTGAATGTAAAAGAAA---GAA-AGAAAGAAAGAAGGAAAAGCAATGTATAAATTTCAGCATTA-AAAAAAATATATATATACTTCAGCCCAATTTATTTCTAAGGAAA] [-] EMBL CB673174 [GCTAAGCCCAAGATGTTGATGATCGAGAGGAAGGGCACCCGCAAGCTGCTCAACCTGCGCGACGTGGCCGCGCTCTGCGAGGACCTCGGGTTTGCGGTGACCGTGGCGGAGGCCGGCGCGGACGTGCGCGGGTTCGCCGAGAAGGTGAACGCGGCGGACGTGCTGCTGGCGGTGCACGGCGCCGGGCTGACAAACCAGATCTTCCTCCCAACGGGCGCCGTGCTCGTACAGATCGTGCCGTGGGGCAAGATGGACTGGATGGCCACAAACTTCTACGGGCAGCCGGCGCGCGACATGCGGCTCCGGTACGTCGAGTATTACGTCTCGGAGGAGGAGACGACGCTCAAGGACAAGTACCCAA GG GACCACTACGTGTTCAAGGACCCCATGGCCATCCAC GCGCAGGG CTGGCCGGCGCTCGCCGAGATCGTCATGAAG CAGGACGTCACGGTGAATGTGACAAGATTCAAGCCGTTCCTGCTCAAGGCGCTCGACGAATTGCAGGAATAGGAGGAGCG CCGTTTGATTGGTTTTGTGTGGGCGTGGCTCGTCCATAAGTGGGATGTAGGATGTTTTGATTTTATATTTATATTGTAATATTGAGTTAATCAATGTAATTTATTTCGTTGGAGATTCATGGTGTTTGTCATTCAGAAAAATATGATTTCTTCTTTTTGGTTGTTGAATGTAAAAGAAATTTGAAGGGGAAGAAg ] [-] EMBL CB627353 [ cTGATGATCGAGAGGAAGGGCACCCGCAAGCTGCTCAACCTGCGCGACGTGGCCGCGCTCTGCGAGGACCTCGGGTTTGCGGTGACCGTGGCGGAGGCCGGCGCGGACGTGCGCGGGTTCGCCGAGAAGGTGAACGCGGCGGACGTGCTGCTGGCGGTGCACGGCGCCGGGCTGACAAACCAGATCTTCCTCCCAACGGGCGCCGTGCTCGTACAGATCGTGCCGTGGGGCAAGATGGACTGGATGGCCACAAACTTCTACGGGCAGCCGGCGCGCGACATGCGGCTCCGGTACGTCGAGTATTACGTCTCGGAGGAGGAGACGACGCTCAAGGACAAGTACCCAA GG GACCACTACGTGTTCAAGGACCCCATGGCCATCCAC GCGCAGGG CTGGCCGGCGCTCGCCGAGATCGTCATGAAG CAGGACGTCACGGTGAATGTGACAAGATTCAAGCCGTTCCTGCTCAAGGCGCTCGACGAATTGCAGGAATAGGAGGAGCG CCGTTTGATTGGTTTTGTGTGGGCGTGGCTCGTCCATAAGTGGGATGTAGGATGTTTTGATTTTATATTTATATTGTAATATTGAGTTAATCAATGTAATTTATTTCGTTGGAGATTCATGGTGTTTGTCATTCAGAAAAATATGATTTCTTCTTTTTGGTTGTTGAATGTAAAAGAAA GAA AGAAAGAAAGAAGGAAAAGCAATGTATAAATTTCAGCATTATAAAAAAATATATATATACTTCAGCC ] [-] EMBL CB674913 [ ATCGAGAGGAAGGGCACCCGCAAGCTGCTCAACTTGCGCGACGTGGCCGCGCTCTGCGAGGACCTCGGGTTTGCGGTGACCGTGGCGGAGGCCGGCGCGGACGTGCGCGGGTTCGCCGAGAAGGTGAACGCGGCGGACGTGCTGCTGGCGGTGCACGGCGCCGGGCTGACAAACCAGATCTTCCTCCCAACGGGCGCCGTGCTCGTACAGATCGTGCCGTGGGGCAAGATGGACTGGATGGCCACAAACTTCTACGGGCAGCCGGCGCGCGACATGCGGCTCCGGTACGTCGAGTATTACGTCTCGGAGGAGGAGACGACGCTCAAGGACAAGTACCCAA GG GACCACTACGTGTTCAAGGACCCCATGGCCATCCAC GCGCAGGG CTGGCCGGCGCTCGCCGAGATCGTCATGAAG CAGGACGTCACGGTGAATGTGACAAGATTCAAGCCGTTCCTGCTCAAGGCGCTCGACGAATTGCAGGAATAGGAGGAGCG CCGTTTGATTGGTTTTGTGTGGGCGTGGCTCGTCCATAAGTGGGATGTAGGATGTTTTGATTTTATATTTATATTGTAATATTGAGTTAATCAATGTAATTTATTTCGTTGGAGATTCATGGTGTTTGTCATTCAGAAAAATATGATTTCTTCTTTTTGGTTGTTGAATGTAAAAGAAA GAA AGAAAGAAAGAAGGAAAAGCAATGTATAAATTTCAGCATTA AGGAAAATATATATATACTTCAGCCCAATTTATTTCTAAGGAAA] [-] EMBL CB639137 [ AAGCTGCTCAACCTGCGCGACGTGGCCGCGCTCTGCGAGGACCTCGGGTTTGCGGTGACCGTGGCGGAGGCCGGCGCGGACGTGCGCGGGTTCGCCGAGAAGGTGAACGCGGCGGACGTGCTGCTGGCGGTGCACGGCGCCGGGCTGACAAACCAGATCTTCCTCCCAACGGGCGCCGTGCTCGTACAGATCGTGCCGTGGGGCAAGATGGACTGGATGGCCACAAACTTTTACGGGCAGCCGGCGCGCGACATGCGGCTCCGGTACGTCGAGTATTACGTCTCGGAGGAGGAGACGACGCTCAAGGACAAGTACCCAA GG GACCACTACGTGTTCAAGGACCCCATGGCCATCCAC GCGCAGGG CTGGCCGGCGCTCGCCGAGATCGTCATGAAG CAGGACGTCACGGTGAATGTGACAAGATTCAAGCCGTTCCTGCTCAAGGCGCTCGACGAATTGCAGGAATAGGAGGAGCG CCGTTTGATTGGTTTTGTGTGGGCGTGGCTCGTCCATAAGTGGGATGTAGGATGTTTTGATTTTATATTTATATTGTAATATTGAGTTAATCAATGTAATTTA ] [-] EMBL CB637740 [ GGCGCGAACGTGCGCGGGTTCGCCGAGAAGGTGAACGCGGCGGACGTGCTGCTGGCGGTGCACGGCGCCGGGTTGACAAACCAGATCTTCCTCCCAACGGGCGCCGTGCTCGTACAGATCGTGCCGTGGGGCAAGATGGACTGGATGGCCACAAACTTCTACGGGCAGCCGGCGCGCGACATGCGGCTCCGGTACGTCGAGTATTACGTCTCGGAGGAGGAGACGACGCTCAAGGACAAGTACCCAG GG GACCACTACGTGTTCAAGGACCCCATGGCCATCCAC GCGCAGGG CTGGCCGGCGCTCGCCGAGATCGTCATGAAG CAGGACGTCACGGTGAATGTGACAAGATTCAAGCCGTTCCTGCTCAAGGCGCTCGACGAATTGCAGGAATAGGAGGAGCG CCGTTTGATTGGTTTTGTGTGGGCGTGGCTCGTCCATAAGTGGGATGTAGGATGTTTTGATTTTATATTTATATTGTAATATTGAGTTAATCAATGTAATTTATTTCGT ] [+] EMBL AU223076 [ cgGGNTCCGGTACGTCGAGTATTACGTCTCGGAGGAGGAGCCGNCGCTCAAGGCCAAGTACCCAA GG GACCACTACGTGTTCAAGGACCCCATGGCCATCCAC GCGCAGGG CTGGCCGGCGCTCNCCGAGATCGTCATGAAG CAGGACGTCNCGGTGAATGTGACAAGATTCAAGCCGTTCCTGCTCAAGGCGCTCGACGAATTGCAGGAATAGGAGGAGCG CCGTTTGATTGGTTTTGTGTGGGCGTGGCTCGTCCATAAGTGGGATGTAGGATGTTTTGATTTTATATTTATATTGTAATATTGAGTTAATCAATGTAATTTATTTCGTTGGAGATTCATGGTGTTTGTCATTCAGAAAAATATGATTTCTTCTTTTTGGTTGTTGAATGTAAAAGAAA GAA AGAAAGAAAGAAGGAAAAGCAATGTATAAAaaa ] [+] EMBL BM419823 [ GTACCCAA GG GACCACTACGTGTTCAAGGACCCCATGGCCATCCAC GCGCAGGG CTGGCCGGCGCTCGCCGAGATCGTCATGAAGCCAGGACGTCACGGTGAATGTGACAAGATTCAAGCCGTTCCTGCTCAAGGCGCTCGACGAATTGCAGGAATAGGAGGAGCGCCCGTTTGATTGGTTTTGTGTGGGCGTGGCTCGTCCATAAGTGGGATGTAGGATGTTTTGATTTTATATTTATATTGTAATATTGAGTTAATCAATGTAATTTATTTCGTTGGAGATTCATGGTGTTTGTCATTCAGAAAAATATGATTTCTTCTTTTTGGTTGTTGAATGTAAAAGAAA GAA AGAAAGAAAGAAGGAAAAGC ATGTATAAATTTCAGCATTA AAAA ] [+] EMBL AU108933 [ GTACCCAATGGTGAC CTACGTGTTCAAGGACCCCATGGCCATCCACTGCGCAGGGNCTGGCCGGCGCTCGCCGAGATCGTCATGAAG CAGGACGTCACGGTGAATGTGACAAGATTCAAGCCGTTCCTGCTCAAGGCGCTCGACGAATTGCAGGAATAGGAGGAGCG CCGTTTGATTGGTTTTGTGTGGGCGTGGCTCGTCCATAAGTGGGATGTAGGATGTTTTGATTTTATATTTATATTGTAATATTGAGTTAATCAATGTAATTTATTTCGTTGGAGATTCATGGTGTTTGTCATTCAGAAAAAaaa ] consensusID : consensus_15333#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 616 fasta sequence [ACTTGGCCCNNCGCTTTTNCCGAGGACCNTCGGGGTTTTTNCCGGTTGACCCNTTGGCCGGAAGNCCCGNCGCCGGACCTTTCNCCGGGTTTCNCCCGAGAAAGGTTGAACGCCGCCGGAACGTTGCTGCTNGGCGGTGCACGGCCGCCGGGGCTGACAAAACCCANATCTTCCCTCCCCAACGGGCCNCCCGTGCTCGTTACAGATTCGTGCCCTTGGGGCAAGATGGGACTGGATGG-CCACAAACTTTCTAC-GGNCAG-CCGNCGCGCGACATGCGGCT-CCGGTACGTCGAGTATTACGTCTCGGAGGAGGAGACGACGCTCAAGGACAAGTACCCAAGGGACCCCTACGTGTTCAAGGACCCCATGGCCATCCACGCGCAGGGCTGGCCGGCGCTCGCCGAGATCGTCATGAAGCAGGACGTCACGGTGAATGTGACAAGATTCAAGCCGTTCCTGCTCAAGGCGCTCGACGAATTGCAGGAATAGGAGGAGCGCCGTTTGATTGGTTTTGTGTGGGCGTGGCTCGTCCATAAGTGGGATGTAGGATGTTTTGATTTTATATTTATATTGTAATATTGAGTTAATCAATGTAATTTATTTCGTTGGAAAAAAAA] [+] EMBL AU032655 [ACTTGGCCCNNCGCTTTTNCCGAGGACCNTCGGGGTTTTTNCCGGTTGACCCNTTGGCCGGAAGNCCCGNCGCCGGACCTTTCNCCGGGTTTCNCCCGAGAAAGGTTGAACGCCGCCGGAACGTTGCTGCTNGGCGGTGCACGGCCGCCGGGGCTGACAAAACCCANATCTTCCCTCCCCAACGGGCCNCCCGTGCTCGTTACAGATTCGTGCCCTTGGGGCAAGATGGGACTGGATGG CCACAAACTTTCTAC GGNCAG CCGNCGCGCGACATGCGGCT CCGGTACGTCGAGTATTACGTCTCGGAGGAGGAGACGACGCTCAAGGACAAGTACCCAAGGGACCCCTACGTGTTCAAGGACCCCATGGCCATCCACGCGCAGGGCTGGCCGGCGCTCGCCGAGATCGTCATGAAGCAGGACGTCACGGTGAATGTGACAAGATTCAAGCCGTTCCTGCTCAAGGCGCTCGACGAATTGCAGGAATAGGAGGAGCGCCGTTTGATTGGTTTTGTGTGGGCGTGGCTCGTCCATAAGTGGGATGTAGGATGTTTTGATTTTATATTTATATTGTAATATTGAGTTAATCAATGTAATTTATTTCGTTGGAAAAAAAA] [+] EMBL AU097385 [ TGGATGGCCCACAAACCTTCTACGGGGCAGCCCGNCGCGCGACATGCGGCTCCCGGTACGTCGAGTATTACGNCTCGGAGGAGGAGACGACGCTCAAGGACAAGTACCCAAGGG NACNTACGTGTTCAAGGACCCCATGGCCATCCACGCGCAGGGCTGGCCGGCGCTCGCCGAGATCGTCATGAAGCAGGACGTCACGGTGAATGTGACAAGATTCAAGCCGTTCCTGCTCAAGGCGCTCGACGAATTGCAGGAATAGGAGGAGCGCCGTTTGATTGGTTTTGTGTGGGCGTGGCTCGTCCATAAGTGGGATGTAGGATGTTTTGATTTTATATTTATATTGTAATATTGAGTTAATCAATGTAATTTATTTCGTTGGAAAAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15333#1 ------------------------------------------------------------ consensus_15333#2 ------------------------------------------------------------ consensus_15333#0 ACCGATCTCTCTAAACCCAAATACGCAACAAATACTCAATCGTCACATCTTAAAAAACAA 60 consensus_15333#1 ------------------------------------------------------------ consensus_15333#2 ------------------------------------------------------------ consensus_15333#0 AGAAAAAGGAAGAGAGAGAGAGAGGGAAAACAAAAAAGAAAAGAAAAATCAATTCCCAAC 120 consensus_15333#1 ------------------------------------------------------------ consensus_15333#2 ------------------------------------------------------------ consensus_15333#0 CTTGCTGCTACAAATGCCTCAGGCTTAGCAACTCGACCTCCTCCCCCCTTCTCCCCTTCC 180 consensus_15333#1 ------------------------------------------------------------ consensus_15333#2 ------------------------------------------------------------ consensus_15333#0 TCCCTTCTTTGACTTCCCCTTTCCTCCTCCGTGCGCACGCTCTCCTGATTCATACAGCAT 240 consensus_15333#1 ------------------------------------------------------------ consensus_15333#2 ------------------------------------------------------------ consensus_15333#0 TTCGTCGGGGATGACGTCGACGGCGTACTCCCGGCCGTCGAAGCTGCCGGGCGGCGGCAA 300 consensus_15333#1 ------------------------------------------------------------ consensus_15333#2 ------------------------------------------------------------ consensus_15333#0 CGGCAGCGACCGCAGGCTGCCGCCGCGGCTGATGAGGGGCCTCACCACCAAGATCGAGCC 360 consensus_15333#1 ------------------------------------------------------------ consensus_15333#2 ------------------------------------------------------------ consensus_15333#0 CAAGAAGCTCGGCGTCGGCCTCCTCGCCGGCTGCTGCCTCGCGCTCCTCACCTACGTCTC 420 consensus_15333#1 ------------------------------------------------------------ consensus_15333#2 ------------------------------------------------------------ consensus_15333#0 CCTTGCCAAGCTCTTCGCAATCTACTCCCCTGTGTTCGCCAGCACAGCCAGCACATCCGC 480 consensus_15333#1 ------------------------------------------------------------ consensus_15333#2 ------------------------------------------------------------ consensus_15333#0 TCTGATGCAGGACTCGCCGCCATCCTCGCCGGAGACGGGACCCATTCCGCCCCAAGAAAC 540 consensus_15333#1 ------------------------------------------------------------ consensus_15333#2 ------------------------------------------------------------ consensus_15333#0 TGCAGCTGGCGCCGGAAACAATGACAGCACTGTGGACCCCGTCGATCTCCCTGAGGACAA 600 consensus_15333#1 ------------------------------------------------------------ consensus_15333#2 ------------------------------------------------------------ consensus_15333#0 GTCGCTGGTGGAGGCGCAGCCTCAAGAACCCGGCTTCCCCTCGGCGGAATCTCAGGAGCC 660 consensus_15333#1 ------------------------------------------------------------ consensus_15333#2 ------------------------------------------------------------ consensus_15333#0 TGGCTTGCCGGCGGCGCTCTCGAGGAAGGAGGATGATGCGGAGAGGGCGGCGGCGGCGGC 720 consensus_15333#1 ------------------------------------------------------------ consensus_15333#2 ------------------------------------------------------------ consensus_15333#0 GGCCTCGGAGATAAAGCAATCCGAGAAGAAGAACGGCGTGGCGGCGGGTGGTGATACCAA 780 consensus_15333#1 ------------------------------------------------------------ consensus_15333#2 ------------------------------------------------------------ consensus_15333#0 GATAAAGTGCGACGAGAACGGCGTGGACGAGGGCTTCCCGTACGCGCGGCCGTCGGTTTG 840 consensus_15333#1 ------------------------------------------------------------ consensus_15333#2 ------------------------------------------------------------ consensus_15333#0 CGAGCTGTACGGCGACGTCCGCGTCAGCCCCAAGCAGAAGACCATTTACGTCGTGAACCC 900 consensus_15333#1 ------------------------------------------------------------ consensus_15333#2 ------------------------------------------------------------ consensus_15333#0 GTCGGGCGCCGGCGGCTTCGACGAGAACGGCGAGAAGCGGCTCCGGCCCTACGCCCGCAA 960 consensus_15333#1 ------------------------------------------------------------ consensus_15333#2 ------------------------------------------------------------ consensus_15333#0 GGACGATTTCCTCCTCCCGGGCGTGGTGGAGGTGACTATCAAGTCCGTGCCCTCCGAGGC 1020 consensus_15333#1 ------------------------------------------------------------ consensus_15333#2 ------------------------------------------------------------ consensus_15333#0 GGCGGCCCCCAAGTGCACGAAGCAGCACGCCGTCCCCGCCGTGGTGTTCTCCGTGGCCGG 1080 consensus_15333#1 ------------------------------------------------------------ consensus_15333#2 ------------------------------------------------------------ consensus_15333#0 GTACACGGACAACTTCTTCCACGACATGACCGATGCCATGATCCCGCTATTCCTGACGAC 1140 consensus_15333#1 ------------------------------------------------------------ consensus_15333#2 ------------------------------------------------------------ consensus_15333#0 GGCGCACCTCAAGGGCGAGGTCCAGATCCTCATCACCAACTACAAGCCGTGGTGGGTGCA 1200 consensus_15333#1 ------------------------------------------------------------ consensus_15333#2 ------------------------------------------------------------ consensus_15333#0 GAAGTACACGCCGCTGCTCCGCAAGCTGTCCAACTACGACGTCATCAACTTCGACGAGGA 1260 consensus_15333#1 ------------------------------------------------------------ consensus_15333#2 ------------------------------------------------------------ consensus_15333#0 CGCCGGCGTGCACTGCTTCCCGCAGGGGTACCTCGGTCTGTACCGCGACCGCGACCTCAT 1320 consensus_15333#1 ------------------------------------------------------------ consensus_15333#2 ------------------------------------------------------------ consensus_15333#0 CATCTCCCCGCACCCGACCCGCAACCCGCGCAACTACACCATGGTGGACTACAACCGCTT 1380 consensus_15333#1 ------------------------------------------------------------ consensus_15333#2 ------------------------------------------------------------ consensus_15333#0 CCTCCGCGACGCTCTGGAGCTCCGGCGCGACCGCCCGTCGGTGCTGGGCGAGGAGCCCGG 1440 consensus_15333#1 -GCTAAGCCCAAGATGTTGATGATCGAGAGGAAGGGCACCCG-CAAGCTGCTCAACCTGC 58 consensus_15333#2 -------------------------------------ACTTGGCCCNNCGCTTTTNCCGA 23 consensus_15333#0 GATGCGGCCGCGGATGCTGATCATCTCCCGCGCCGGCACGCG-CAAGCTGCTGAACCTCG 1499 ** * * *** * consensus_15333#1 GCGACGTGGCCGCGCTCTGCGAG-GACCTCGGGTTTGCGGTGACCGTGGCGGAGGCCGGC 117 consensus_15333#2 GGACCNTCGGGGTTTTTNCCGGTTGACCCNTTGGCCGGAAGNCCCGNCGCCGGACCTTTC 83 consensus_15333#0 AGGAGGTGGCCGCGG-CCGCGACGGAGCTTGGTTTCAACGTGACGGTGGCGGAGGCCGGT 1558 * * * ** ** * * * ** * * consensus_15333#1 GCGGACGTGCGCGGGTTCGCCGAGAAGGTGAACGCGGC--GGACGT-GCTGCTGG-CGGT 173 consensus_15333#2 NCCGGGTTTCNCCCGA-----GAAAGGTTGAACGCCGCCGGAACGTTGCTGCTNGGCGGT 138 consensus_15333#0 GCTGACGTGCCCGCGTTCGCGGCGCTGGTGAACTCGGC--GGACGT-GCTGCTGG-CCGT 1614 * * * * * * * * ***** * ** * **** ****** * * ** consensus_15333#1 GCACGGC-GCCGGG-CTGACAAA--CCAGATCTTCCT--CCCAACGGGCGCC--GTGCTC 225 consensus_15333#2 GCACGGCCGCCGGGGCTGACAAAACCCANATCTTCCCTCCCCAACGGGCCNCCCGTGCTC 198 consensus_15333#0 GCACGGC-GCCGGG-CTGACGAA--CCAGATCTTCCT--CCCGGCGGAGGCC--GTGGTG 1666 ******* ****** ***** ** *** ******* *** *** * *** * consensus_15333#1 GT-ACAGAT-CGTGCCGT-GGGGCAAGATGG-ACTGGATGGCCACAAACTT-CTACGGGC 280 consensus_15333#2 GTTACAGATTCGTGCCCTTGGGGCAAGATGGGACTGGATGGCCACAAACTTTCTACGGNC 258 consensus_15333#0 GT-GCAGAT-CGTGCCGT-GGGGGAACATGG-ACTGGATGGCGACCAACTT-TTACGGGC 1721 ** ***** ****** * **** ** **** ********** ** ***** ***** * consensus_15333#1 AGCCGGCGCGCGACATGCGGCTCCGGTACGTCGAGTATTACGTCTCGGAGGAGGAGACGA 340 consensus_15333#2 AGCCGNCGCGCGACATGCGGCTCCGGTACGTCGAGTATTACGTCTCGGAGGAGGAGACGA 318 consensus_15333#0 AGCCGGCGAGGGACATGCAGCTCCGGTACGTGGAGTACTACGTCGGCGAGGAGGAGACGA 1781 ***** ** * ******* ************ ***** ****** ************* consensus_15333#1 CGCTCAAGGACAAGTACCCAAGGGACCACTACGTGTTCAAGGACCCCATGGCCATCCACG 400 consensus_15333#2 CGCTCAAGGACAAGTACCCAAGGGACCCCTACGTGTTCAAGGACCCCATGGCCATCCACG 378 consensus_15333#0 GCCTGAAGCACAACTACTCGCGAGATCACATGGTGTTCAAGGACCCCAAGGCGCTCCACG 1841 ** *** **** *** * * ** * * **************** *** ****** consensus_15333#1 CGCAGGGCTGGCCGGCGCTCGCCGAGATCGTCATGAAGCAGGACGTCACGGTGAATGTGA 460 consensus_15333#2 CGCAGGGCTGGCCGGCGCTCGCCGAGATCGTCATGAAGCAGGACGTCACGGTGAATGTGA 438 consensus_15333#0 CACAGGGATGGCAGACACTCGCCGCGACTATCATGAAGCAGGACGTCGAGGTCAACCTCA 1901 * ***** **** * * ******* ** ***************** *** ** * * consensus_15333#1 CAAGATTCAAGCCGTTCCTGCTCAAGGCGCTCGACGAATTGCAGGAATAG---------- 510 consensus_15333#2 CAAGATTCAAGCCGTTCCTGCTCAAGGCGCTCGACGAATTGCAGGAATAG---------- 488 consensus_15333#0 CCAGGTTCCGGCCAATCCTGCTGCAGGCGCTCGACAGGCTGCAGCAGTAACTCGTCTATC 1961 * ** *** *** ******* *********** ***** * ** consensus_15333#1 --GAGGAGCGC---CGTTTGATTGGTTTTGTGTGGGCGTGGCTCGTCCATAAGTGGGATG 565 consensus_15333#2 --GAGGAGCGC---CGTTTGATTGGTTTTGTGTGGGCGTGGCTCGTCCATAAGTGGGATG 543 consensus_15333#0 CCAATAATCGCAGGCAGCTCATGGCACACATCAATGTATATGCCGGGACGAGACGACACG 2021 * * *** * * ** * * * * ** * * * * consensus_15333#1 TAGGATGTTTTGATTTTATATT--TATATTGTAATATTGAGTTAATCA-ATG-TAATTTA 621 consensus_15333#2 TAGGATGTTTTGATTTTATATT--TATATTGTAATATTGAGTTAATCA-ATG-TAATTTA 599 consensus_15333#0 ACGAGGAACAAGAACGGATACTAGTATATTGTACTGCTGCTTGAAAGAGATGATGATGAT 2081 * ** *** * ********* * ** * ** * *** * ** consensus_15333#1 TTTCGTTGGAGATTCATGGTGTTTGTCATTCAGAAAAATATGATTTCTTCTTTTTGGTTG 681 consensus_15333#2 TTTCGTTGGAAAAAAAA------------------------------------------- 616 consensus_15333#0 CTTAACCGGAGGAGAAC--CATCAGTTGTTGGCGAGGCGGTGGAAGCTTTTCGCATATTG 2139 ** *** * consensus_15333#1 TTGAATGTAAAAGAAAGAAAGAAAGAAAGAAGGAAAAGCAATGTATAAATTTCAGCATTA 741 consensus_15333#2 ------------------------------------------------------------ consensus_15333#0 GTAATTGGTTGGGTTGTCCATTTTGGGTTTGTAACAATTTGCATAGGCATTACACACCAA 2199 consensus_15333#1 AAAAAAATATATATATACTTCAGCCCAATTTATTTCTAAGGAAA---------------- 785 consensus_15333#2 ------------------------------------------------------------ consensus_15333#0 AGATGTTCGATTTTTTTGTTCTTCTTACACTTCTTCACTTCGCCAGCCCATTCAACACTA 2259 consensus_15333#1 --------------------------------- consensus_15333#2 --------------------------------- consensus_15333#0 TACATTCTTTTCTACTAATACGGGAGCCAACTA 2292 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||