These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15351#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 938 fasta sequence [CACCAGCGACACCTACTACTCCTCCTCCCCTCCCCTCTCGAAACGCGGCTTCGACATGGCGGCGGCGGCGGCGCACAAGGAGGAGGTGATCGGGAAGCTCAACGTCCGCGTGGTGCGGGGCTCCAACCTCATCATCGCCGACCCGCTCACCCACACCAGCGACCCCTACGTCGTCCTCTCCTACGGCCCACAGAAAGTGAAGACCAGTGTCCAGAAGAAGAATTCCAATCCTGTCTGGAATGAAGTAC-TGCAGCTCGCAGTCACAAATCCTACAAAGCCAGTAAAACTTGAAG-TTTTCGATGAGGATAAATTCACAGCAGATGACAGCATGGGCGTAGCTGAGTTCAACGTGACTGACATCTACGATGCTGCTAAGCTGGATCTAAAGCATGTCTCTGACGGGGCCAGGATCAAGACGATCTACCCAGTTGGTGTGAACTATCTTGGCGCAGAGAGCCACGTTTCATGGAAAAATGGCAAGGGTCGTCCAAGACATCACTCTGAAGCTGAGCAAGGTTGACAGTGGCCTGATCGTGCTGCAGCTGGAGTGGGTTCACGTCCCAGGTGTTACCCTCTGAGCAGTGTCCGATGGTCGTCGATGGAGCTGCAGGTGCAGCTGGTCTCTGAATGTGATATTGTAGACTATGCGTGTGGACGTTGTTTGCAATGTGTACCTCCGATATGTGTGCTGTTGGTTTGTAGTTTCTGCGGTTATATTTGTACTCCTTAGTGTCAAGTGTTTGTGTCTATCAGTGTGTCACAATAAGAATCGACCTGCTGAGGTCATCTGGAGCGAGATGTAAATTAAGAATTCAGGTGTTCATTATGTTGTAGAATTGTCCGATTTGTTCCAATAGTAATGCTTTCGATGTCTAAAAAATAGAAGTGTTCCAACTTTTTTATTCCATGATCTTTAAAAAAAAAGTAATACTTTCGAT] [+] EMBL CF293744 [CACCAGCGACACCTACTACTCCTCCTCCCCTCCCCTCTCGAAACGCGGCTTCGACATGGCGGCGGCGGCGGCGCACAAGGAGGAGGTGATCGGGAAGCTCAACGTCCGCGTGGTGCGGGGCTCCAACCTCATCATCGCCGACCCGCTCACCCACACCAGCGACCCCTACGTCGTCCTCTCCTACGGCCCACAGAAAGTGAAGACCAGTGTCCAGAAGAAGAATTCCAATCCTGTCTGGAATGAAGTAC TGCAGCTCGCAGTCACAAATCCTACAAAGCCAGTAAAACTTGAAG TTTTCGATGAGGATAAATTCACAGCAGATGACAGCATGGGCGTAGCTGAGTTCAACGTGACTGACATCTACGATGCTGCTAAGCTGGATCTAAAGCATGTCTCTGACGGGGCCAGGATCAAGACGATCTACCCAGTTGGTGTGAACTATCTTGGCGCAGAGAGCCACGTTTCATGGAAAAATGGCAAGGGTCGTCCAAGACATCACTCTGAAGCTGAGCAAGGTTGACAGTGGCCTGATCGTGCTGCA CTGGAGTG ] [+] EMBL AK120268 [ CAGCGGCACCTACTACTCCTCCTCCCCTCCCCTCTCGAAACGCGGCTTCGACATGGCGGCGGCGGCGGCGCACAAGGAGGAGGTGATCGGGAAGCTCAACGTCCGCGTGGTGCGGGGCTCCAACCTCATCATCGCCGACCCGCTCACCCACACCAGCGACCCCTACGTCGTCCTCTCCTACGGCCCACAGAAAGTGAAGACCAGTGTCCAGAAGAAGAATTCCAATCCTGTCTGGAATGAAGTAC TGCAGCTCGCAGTCACAAATCCTACAAAGCCAGTAAAACTTGAAG TTTTCGATGAGGATAAATTCACAGCAGATGACAGCATGGGCGTAGCTGAGTTCAACGTGACTGACATCTACGATGCTGCTAAGCTGGATCTAAAGCATGTCTCTGACGGGGCCAGGATCAAGACGATCTACCCAGTTGGTGTGAACTATCTTGGCGCAGAGAGCCACGTTTCATGGAAAAATGGCAA GGTCGTCCAAGACATCACTCTGAAGCTGAGCAAGGTTGACAGTGGCCTGATCGTGCTGCAGCTGGAGTGGGTTCACGTCCCAGGTGTTACCCTCTGAGCAGTGTCCGATGGTCGTCGATGGAGCTGCAGGTGCAGCTGGTCTCTGAATGTGATATTGTAGACTATGCGTGTGGACGTTGTTTGCAATGTGTACCTCCGATATGTGTGCTGTTGGTTTGTAGTTTCTGCGGTTATATTTGTACTCCTTAGTGTCAAGTGTTTGTGTCTATCAGTGTGTCACAATAAGAATCGACCTGCTGAGGTCATCTGGAGCGAGATGTAAATTAAGAATTCAGGTGTTCATTATGTTGTAGAATTGTCCGATTTGTTCCAATAGTAATGCTTTCGATGTCTAAAAAATAGAAGTGTTCCAACTTTTTTATTCCATGATCTTTAAAAAAAAAGTAATACTTTCGAT] [+] EMBL CF329864 [ CAGCGACACCTACTACTCCTCCTCCCCTCCCCTCTCGAAACGCGGCTTCGACATGGCGGCGGCGGCGGCGCACAAGGAGGAGGTGATCGGGAAGCTCAACGTCCGCGTGGTGCGGGGCTCCAACCTCATCATCGCCGACCCGCTCACCCACACCAGCGACCCCTACGTCGTCCTCTCCTACGGCCCACAGAAAGTGAAGACCAGTGTCCAGAAGAAGAATTCCAATCCTGTCTGGAATGAAGTAC TGCAGCTCGCAGTCACAAATCCTACAAAGCCAGTAAAACTTGAAG TTTTCGATGAGGATAAATTCACAGCAGATGACAGCATGGGCGTGGCTGAGTTCAACGTGACTGACATCTACGATGCTGCTAAGCTGGATCTAAAGCATGTCTCTGACGGGGCCAGGATCAAGACGATCTACCCAGTTGGTGTGAACTATCTTGGCGCAGAGAGCCACGTTTCATGGAAAAATGGCAAGGGTCGTCCAAGACATCACTCTGAAGCTGAGCAAGGTTGACAGTGGCCTGAT ] [+] EMBL AK061939 [ CGACACCTACTACTCCTCCTCCCCTCCCCTCTCGAAACGCGGCTTCGACATGGCGGCGGCGGCGGCGCACAAGGAGGAGGTGATCGGGAAGCTCAACGTCCGCGTGGTGCGGGGCTCCAACCTCATCATCGCCGACCCGCTCACCCACACCAGCGACCCCTACGTCGTCCTCTCCTACGGCCCACAGAAAGTGAAGACCAGTGTCCAGAAGAAGAATTCCAATCCTGTCTGGAATGAAGTAC TGCAGCTCGCAGTCACAAATCCTACAAAGCCAGTAAAACTTGAAG TTTTCGATGAGGATAAATTCACAGCAGATGACAGCATGGGCGTAGCTGAGTTCAACGTGACTGACATCTACGATGCTGCTAAGCTGGATCTAAAGCATGTCTCTGACGGGGCCAGGATCAAGACGATCTACCCAGTTGGTGTGAACTATCTTGGCGCAGAGAGCCACGTTTCATGGAAAAATGGCAA GGTCGTCCAAGACATCACTCTGAAGCTGAGCAAGGTTGACAGTGGCCTGATCGTGCTGCAGCTGGAGTGGGTTCACGTCCCAGGTGTTACCCTCTGAGCAGTGTCCGATGGTCGTCGATGGAGCTGCAGGTGCAGCTGGTCTCTGAATGTGATATTGTAGACTATGCGTGTGGACGTTGTTTGCAATGTGTACCTCCGATATGTGTGCTGTTGGTTTGTAGTTTCTGCGGTTATATTTGTACTCCTTAGTGTCAAGTGTTTGTGTCTATCAGTGTGTCACAATAAGAATCGACCTGCTGAGGTCATCTGGAGCGAGATGTAAATTAAGAATTCAGGTGTTCATTATGTTGTAGAATTGTCC ] [+] EMBL CF332938 [ CTACTACTCCTCCTCCCCTCCCCTCTCGAAACGCGGCTTCGACATGGCGGCGGCGGCGGCGCACAAGGAGGAGGTGATCGGGAAGCTCAACGTCCGCGTGGTGCGGGGCTCCAACCTCATCATCGCCGACCCGCTCACCCACACCAGCGACCCCTACGTCGTCCTCTCCTACGGCCCACAGAAAGTGAAGACCAGTGTCCAGAAGAAGAATTCCAATCCTGTCTGGAATGAAGTAC TGCAGCTCGCAGTCACAAATCCTACAAAGCCAGTAAAACTTGAAG TTTTCGATGAGGATAAATTCACAGCAGATGACAGCATGGGCGTAGCTGAGTTCAACGTGACTGACATCTACGATGCTGCTAAGCTGGATCTAAAGCATGTCTCTGACGGGGCCAGGATCAAGACGATCTACCCAGTTGGTGTGAACTATCTTGGCGCAGAGAGCCACGTTTCATGGAAAAATGGCAAGGGTCGTCCAAGACATCACTCTGAAGCTGAGCAAGGTTGACAGTGGCCTGATCGTGCTGCAGCTGGAGTG ] [+] EMBL CF332541 [ CTACTACTCCTCCTCCCCTCCCCTCTCGAAACGCGGCTTCGACATGGCGGCGGCGGCGGCGCACAAGGAGGAGGTGATCGGGAAGCTCAACGTCCGCGTGGTGCGGGGCTCCAACCTCATCATCGCCGACCCGCTCACCCACACCAGCGACCCCTACGTCGTCCTCTCCTACGGCCCACAGAAAGTGAAGACCAGTGTCCAGAAGAAGAATTCCAATCCTGTCTGGAATGAAGTAC TGCAGCTCGCAGTCACAAATCCTACAAAGCCAGTAAAACTTGAAG TTTTCGATGAGGATAAATTCACAGCAGATGACAGCATGGGCGTAGCTGAGTTCAACGTGACTGACATCTACGATGCTGCTAAGCTGGATCTAAAGCATGTCTCTGACGGGGCCAGGATCAAGACGATCTACCCAGTTGGTGTGAACTATCTTGGCGCAGAGAGCCACGTTTCATGGAAAAATGGCAAGGGTCGTCCAAGACATCACTCTGAAGCTGAGCAAGGTTGACAGTGGCCTGATCG ] [+] EMBL CB684419 [ CCCTCCCCCCTCGAAACGCGGCTTCGACATGGCGGCGGCGGCGGCGCACAAGGAGGAGGTGATCGGGAAGCTCAACGTCCGCGTGGTGCGGGGCTCCAACCTCATCATCGCCGACCCGCTCACCCACACCAGCGACCCCTACGTCGTCCTCTCCTACGGCCCACAGAAAGTGAAGACCAGTGTCCAGAAGAAGAATTCCAATCCTGTCTGGAATGAAGTAC TGCAGCTCGCAGTCACAAATCCTACAAAGCCAGTAAAACTTGAAG TTTTCGATGAGGATAAATTCACAGCAGATGACAGCATGGGCGTAGCTGAGTTCAACGTGACTGACATCTACGATGCTGCTAAGCTGGATCTAAAGCATGTCTCTGACGGGGCCAGGATCAAGACGATCTACCCAGTTGGTGTGAACTATCTTGGCGCAGAGAGCCACGTTTCATGGAAAAATGGCAA GGTCGTCCAAGACATCACTCTGAAGCTGAGCAAGGTTGACAGTGGCCTGATCGTGCTGCAGCTGGAGTGGGTTCACGTCCCAGGTGTTACCCTCTGAGCAGTGTCCGATGGTCGTCGATGGAGCTGCAGGTGCAGCTGGTCTCTGAATGTGATATTGTAGACTATGCGTGTGGACGTTGTTTGCAATGTGTACCTCCGATATGTGTGCTGTTGGTTTGTAGTTTCTGCGGTTATATTTGTACTCCTTAGTGTCAAGTGTTTGTGTCTATCAGTGTGTCACAATAAGAATCGACCTGCTGAGGTCATCTGGAGCGAGATGTAAATTAAGAATTCAGGTGTTC ] [+] EMBL C26996 [ TCGAAACGCGGCTTCGACATGGCGGCGGCGGCGGCGCACAAGNAGGAGGTGATCGGNAAGCTCAACGTCCGCNTGGTGCGGGGCTCCAACCTCATCATCGCCGACCCGCTCACCCACACCAGCGACCCCTACGTCGTCCTCTCCTACGGCCCACAGAAAGTNAAGACCAGTGTCCAGAAGAAGAATTCCAATCCTGTNTGGAATNAAGTACTTGCAGCTCGCAGTCACAAATCCTACAAAGCCAGTANAACTTGAAGTTTTTCGATGAGGTTAAATTC ] [+] EMBL AU065993 [ CGAAACGCGGCTTCGACATGGCGGCGGCGGCGGCGCACAAGGAGGAGGTGATCGGGAAGCTCAACGTCCGCNTGGTGCGGGGCTCCAACCTCATCATCGCCGACCCGCTCACCCACACCAGCGACCCCTACGTCGTCCTCTCCTACGGCCCACAGAAAGTGAAGACCAGTNTCCAGAAGAAGAATTCCAATCCTGTCTGGAATGAAGTACTTGCAGCTC ] [+] EMBL OSS12722A [ AACGCGGCTTCGACATGGCGGCGGCGGCGGCGCACAAGGAGGAGGTGATCGGGAAGCTCAACGTCCGCGTGGTGCGGGGCTCCAACCTCATCATCGCCGACCCGCTCACCCACACCAGCGACCCCTACGTCGTCCTCTCCTACGGCCCACAGAAAGTGAAGACCAGTGTCCAGAAGAAGAATTCCAATCCTGTCTGGAATGAAGTAC TGCAGCTCGCAGTCACAAATCCTACAAAGCCAGTAAAACTTGAAG TTTTCGATGAGGATAAATTCACAGCAGATGACAGCATGGGCGTAG TGAGTTCAACGTGACTTACATCTACGATGCTGCTAAGNTGGATCTAAAGCATGTTTCTGACGGGGC ] [-] EMBL CB684420 [ CGTCCTCTCCTACGGCCCACAGAAAGTGAAGACCAGTGTCCAGAAGAAGAATTCCAATCCTGTCTGGAATGAAGTAC TGCAGCTCGCAGTCACAAATCCTACAAAGCCAGTAAAACTTGAAG TTTTCGATGAGGATAAATTCACAGCAGATGACAGCATGGGCGTAGCTGAGTTCAACGTGACTGACATCTACGATGCTGCTAAGCTGGATCTAAAGCATGTCTCTGACGGGGCCAGGATCAAGACGATCTACCCAGTTGGTGTGAACTATCTTGGCGCAGAGAGCCACGTTTCATGGAAAAATGGCAA GGTCGTCCAAGACATCACTCTGAAGCTGAGCAAGGTTGACAGTGGCCTGATCGTGCTGCAGCTGGAGTGGGTTCACGTCCCAGGTGTTACCCTCTGAGCAGTGTCCGATGGTCGTCGATGGAGCTGCAGGTGCAGCTGGTCTCTGAATGTGATATTGTAGACTATGCGTGTGGACGTTGTTTGCAATGTGTACCTCCGATATGTGTGCTGTTGGTTTGTAGTTTCTGCGGTTATATTTGTACTCCTTAGTGTCAAGTGTTTGTGTCTATCAGTGTGTCACAATAAGAATCGACCTGCTGAGGTCATCTGGAGCGAGATGTAAATTAAGAATTCAGGTGTTCATTATGTTGTAGAATTGTCCGATTAGTTCCAATAGTAATGCTTTCGATGTCTAAAAAA ] consensusID : consensus_15351#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 858 fasta sequence [AGTTTAGTGTTTTGCATTGTTGATTATGTAAACTGTAGCTTTTGCAGAGGCATACATGTTATATTCTTCGGATGCTCATCAATTTTTTATATGTTACTCCCAATCTTACCATATTTTTTTATCACTGAAGTGTTCTTTTACTGATGGTATAGAAAGTGAAGACCAGTGTCCAGAAGAAGAATT-CCAATCCTGTCTGGAATGAAGTACTGCAGCTCGCAGTCACAAAT-CCTACAAAGCCAGTAAAACTTGAAGTTTTCGATGAGGATAAATTCACAGCAGATGACAGCATGGGCGTAGCTGAGTTCAACGTGACTGACATCTACGATGCTGCTAAGCTGGATCTAAAGCATGTCTCTGACGGGGCCAGGATCAAGACGATCTACCCAGTTGGTGTGAACTATCTTGGCGCAGAGAGCCACGTTTCATGGAAAAATGGCAAGGTCGTCCAAGACATCACTCTGAAGCTGAGCAAGGTTGACAGTGGCCTGATCGTGCTGCAGCTGGAGTGGGTTCACGTCCCAGGTGTTACCCTCTGAGCAGTGTCCGATGGTCGTCGATGGAGCTGCAGGTGCAGCTGGTCTCTGAATGTGATATTGTAGACTATGCGTGTGGACGTTGTTTGCAATGTGTACCTCCGATATGTGTGCTGTTGGTTTGTAGTTTCTGCGG-TTATATTTGTACTCCTT-AGT-GTCAAGTGTTTGTGTCTATCAGTGTGTCACAATAAGAATCGACCTGCTGAGGTCATCTGGAGCGAGATGTAAATTAAG-AATTCAGGTGTTCATTATGTTGTAGAATTGTCCGATTTGTTCCAATAGTAATGCTTTCGATGTCTAAAAAAAAAAAAAAAAACCTCGTGCC] [-] EMBL CB674616 [AGTTTAGTGTTTTGCATTGTTGATTATGTAAACTGTAGCTTTTGCAGAGGCATACATGTTATATTCTTCGGATGCTCATCAATTTTTTATATGTTACTCCCAATCTTACCATATTTTTTTATCACTGAAGTGTTCTTTTACTGATGGTATAGAAAGTGAAGACCAGTGTCCAGAAGAAGAATT CCAATCCTGTCTGGAATGAAGTACTGCAGCTCGCAGTCACAAAT CCTACAAAGCCAGTAAAACTTGAAGTTTTCGATGAGGATAAATTCACAGCAGATGACAGCATGGGCGTAGCTGAGTTCAACGTGACTGACATCTACGATGCTGCTAAGCTGGATCTAAAGCATGTCTCTGACGGGGCCAGGATCAAGACGATCTACCCAGTTGGTGTGAACTATCTTGGCGCAGAGAGCCACGTTTCATGGAAAAATGGCAAGGTCGTCCAAGACATCACTCTGAAGCTGAGCAAGGTTGACAGTGGCCTGATCGTGCTGCAGCTGGAGTGGGTTCACGTCCCAGGTGTTACCCTCTGAGCAGTGTCCGATGGTCGTCGATGGAGCTGCAGGTGCAGCTGGTCTCTGAATGTGATATTGTAGACTATGCGTGTGGACGTTGTTTGCAATGTGTACCTCCGATATGTGTGCTGTTGGTTTGTAGTTTCTGCGG TTATATTTGTACTCCTT AGT GTCAAGTGTTTGTGTCTATCAGTGTGTCACAATAAGAATCGACCTGCTGAGGTCATCTGGAGCGAGATGTAAATTAAG AATTCAGGTGTTCATTATGTTGTAGAATTGTCCGATTTGTTCCAATAGTAATGCTTTCGATGTCTAAAAAAAAAga ] [-] EMBL CF332540 [ GAAAGTGAAGACCAGTGTCCAGAAGAAGAATTCCCAATCCTGTCTGGAATGAAGTACTGCAGCTCGCAGTCACAAATCCCTACAAAGCCAGTAAAACTTGAAGTTTTCGATGAGGATAAATTCACAGCAGATGACAGCATGGGCGTAGCTGAGTTCAACGTGACTGACATCTACGATGCTGCTAAGCTGGATCTAAAGCATGTCTCTGACGGGGCCAGGATCAAGACGATCTACCCAGTTGGTGTGAACTATCTTGGCGCAGAGAGCCACGTTTCATGGAAAAATGGCAAGGTCGTCCAAGACATCACTCTGAAGCTGAGCAAGGTTGACAGTGGCCTGATCGTGCTGCAGCTGGAGTGGGTTCACGTCCCAGGTGTTACCCTCTGAGCAGTGTCCGATGGTCGTCGATGGAGCTGCAGGTGCAGCTGGTCTCTGAATGTGATATTGTAGACTATGCGTGTGGACGTTGTTTGCAATGTGTACCTCCGATATGTGTGCTGTTGGTTTGTAGTTTCTGCGG TTATATTTGTACTCCTT AGT GTCAAGTGTTTGTGTCTATCAGTGTGTCACAATAAGAATCGACCTGCTGAGGTCATCTGGAGCGAGATGTAAATTAAG AATTCAGGTGTTCATTAaaaaa ] [-] EMBL CF332937 [ ACTGCAGCTCGCAGTCACAAAT CCTACAAAGCCAGTAAAACTTGAAGTTTTCGATGAGGATAAATTCACAGCAGATGACAGCATGGGCGTAGCTGAGTTCAACGTGACTGACATCTACGATGCTGCTAAGCTGGATCTAAAGCATGTCTCTGACGGGGCCAGGATCAAGACGATCTACCCAGTTGGTGTGAACTATCTTGGCGCAGAGAGCCACGTTTCATGGAAAAATGGCAAGGTCGTCCAAGACATCACTCTGAAGCTGAGCAAGGTTGACAGTGGCCTGATCGTGCTGCAGCTGGAGTGGGTTCACGTCCCAGGTGTTACCCTCTGAGCAGTGTCCGATGGTCGTCGATGGAGCTGCAGGTGCAGCTGGTCTCTGAATGTGATATTGTAGACTATGCGTGTGGACGTTGTTTGCAATGTGTACCTCCGATATGTGTGCTGTTGGTTTGTAGTTTCTGCGG TTATATTTGTACTCCTT AGT GTCAAGTGTTTGTGTCTATCAGTGTGTCACAATAAGAATCGACCTGCTGAGGTCATCTGGAGCGAGATGTAAATTAAG AATTCAGGTGTTCATTAaaaaa ] [-] EMBL CF325491 [ CAGGATCAAGACGATCTACCCAGTTGGTGTGAACTATCTTGGCGCAGAGAGCCACGTTTCATGGAAAAATGGCAAGGTCGTCCAAGACATCACTCTGAAGCTGAGCAAGGTTGACAGTGGCCTGATCGTGCTGCAGCTGGAGTGGGTTCACGTCCCAGGTGTTACCCTCTGAGCAGTGTCCGATGGTCGTCGATGGAGCTGCAGGTGCAGCTGGTCTCTGAATGTGATATTGTAGACTATGCGTGTGGACGTTGTTTGCAATGTGTACCTCCGATATGTGTGCTGTTGGTTTGTAGTTTCTGCGG TTATATTTGTACTCCTT AGT GTCAAGTGTTTGTGTCTATCAGTGTGTCACAATAAGAATCGACCTGCTGAGGTCATCTGGAGCGAGATGTAAATTAAGAAAAAAAAATGTTCATTATGTTGTAGAATTGTCCGATTTGTTCCAATAGTAATGCTTTCGATGTCTAAAAAAAAAAAAAAAAACCTCGTGCC] [+] EMBL OSC29101 [ AGGATCAAGACGATCTACCCAGTTGGTGTGAACTATCTTGGCGCAGAGAGCCACGTTTCATGGAAAAATGGCAAGGTCGTCCAAGACATCACTCTGAAGCTGAGCAAGGTTGACAGTGGCCTGATCGTGCTGCAGCTGGAGTGGGTTCACGTCCCAGGTGTTACCCTCTGAGCAGTGTCCGATGGTCGTCGATGGAGCTGCAGGTGCA NTGGTCTCTGAATNTGATATTGTAGACTATGCGTGTGGACGTTGTTTGCAATGTGTACCTCCGATATGTGTGCTGTTGGTTTGTAGTTTCTGCGGTTTATATTTGTACTCCTTNAGTGGTCAAGTGTTTGTGTCTATCAGTGTGTCACAATAAGAATCGACCTGCT ] [-] EMBL CF293745 [ GATCAAGACGATCTACCCAGTTGGTGTGAACTATCTTGGCGCAGAGAGCCACGTTTCATGGAAAAATGGCAAGGTCGTCCAAGACATCACTCTGAAGCTGAGCAAGGTTGACAGTGGCCTGATCGTGCTGCAGCTGGAGTGGGTTCACGTCCCAGGTGTTACCCTCTGAGCAGTGTCCGATGGTCGTCGATGGAGCTGCAGGTGCAGCTGGTCTCTGAATGTGATATTGTAGACTATGCGTGTGGACGTTGTTTGCAATGTGTACCTCCGATATGTGTGCTGTTGGTTTGTAGTTTCTGCGG TTATATTTGTACTCCTT AGT GTCAAGTGTTTGTGTCTATCAGTGTGTCACAATAAGAATCGACCTGCTGAGGTCATCTGGAGCGAGATGTAAATTAAG AATTCAGGTGTTCATTATGTTGTAGAATTGTCCGACTTGTTCCAATAGTAATGCTTTCGATGTCTAAAAAAAA ] [+] EMBL AU088694 [ taATCTTGGCGCAGAGAGCCNCGTTTCATGGAAAAATGGCAAGGTCGTCCAAGACATCNCTCTGAAGCTGANCAAGGTTGACAGTGGCCTGATCGTGCTGCAGCTGGAGTGGGTTCACGTCCCAGGTGTTACCCTCTGAGCAGTGTCCGNTGGTCGTCGATGGAGCTGCAGGTGCAGCTGGTCTCTGAATGTGATATTGTAGACTATGCGTGTGGACGTTGTTTGCAATGTGTACCTCCGATATGTGTGCTGTTGGTTTGTAGTTTCTGCGG TTATATTTGTACTCCTT AGT GTCAAGTGTNTGTGTCTATCAGTGTGTCACAATAAGAATCGACCTGCTGAGGTCATCTGGAGCGAGATGTAAATTAAG AATTCAGGTGTTCATTATGTTGTAGAATTGTCCGATTTGTTCCAATAGTAATGCTTTCGATGTCTAAAAAAAAAA ] consensusID : consensus_15351#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 791 fasta sequence [CCCCTCCCCTCTCGAAACGCGGCTTCGACATGGCGGCGGCGGCGGCGCACAAGGAGGAGGTGATCGGGAAGCTCAACGTCCGCGTGGTGCGGGGCTCCAACCTCATCATCGCCGACCCGCTCACCCACACCAGCGACCCCTACGTCGTCCTCTCCTACGGCCCACAGGTCCGCCACCGCCATACCCATGTTCCCTTAATTTCTTCCTTTCTTGCGTTTGGGGATCCTTCGTGACTGACCTCCGCATTTTGGGGATCCGGGGCTCGGGACGGGGGGGTCTTCGATCGATCTGCCGCGGTATCCGTACGTGAAGCCAAGAAATGTTGGCGTCCGCTTTGTCCGGGACCGGGGTGCGAATCTGTCGCTGTGTGTGCTCACAAGGTGTTTGATAAGATGGCGACATGTTCGCGACTTTCCAGGGATTTTTTTTTTGGCCTTTCGATTTGATAGGGTGACTGACTGCCAGTTGAGCTAAACAGGACGCTTAAATTCGCATTGCTGAATTTAAAAATTCTGAATTTTGGTCGGTTTGAGTTGGCCTTCAGTCCCAGTTTGGTCAGTTGTCCATGGACCTGCAAAACTGGTTAATCAGAACAAATTTTGTTAACTAAGGGGTAGTTATGCTTTGACGAATTTTGAACTGAAGAGCAGAGTAACAAGCCCTGTAATGACAAATCTTGTCAGCTAAGGGATATACAGCTTCGCAGAACATCACTCTTAACTCTGTAATGACAAATCTTGGATAGTCTTTCATGACGCATCACACGAATGCTGAATTGATGCTCAAAATGG] [+] EMBL CB674615 [CCCCTCCCCTCTCGAAACGCGGCTTCGACATGGCGGCGGCGGCGGCGCACAAGGAGGAGGTGATCGGGAAGCTCAACGTCCGCGTGGTGCGGGGCTCCAACCTCATCATCGCCGACCCGCTCACCCACACCAGCGACCCCTACGTCGTCCTCTCCTACGGCCCACAGGTCCGCCACCGCCATACCCATGTTCCCTTAATTTCTTCCTTTCTTGCGTTTGGGGATCCTTCGTGACTGACCTCCGCATTTTGGGGATCCGGGGCTCGGGACGGGGGGGTCTTCGATCGATCTGCCGCGGTATCCGTACGTGAAGCCAAGAAATGTTGGCGTCCGCTTTGTCCGGGACCGGGGTGCGAATCTGTCGCTGTGTGTGCTCACAAGGTGTTTGATAAGATGGCGACATGTTCGCGACTTTCCAGGGATTTTTTTTTTGGCCTTTCGATTTGATAGGGTGACTGACTGCCAGTTGAGCTAAACAGGACGCTTAAATTCGCATTGCTGAATTTAAAAATTCTGAATTTTGGTCGGTTTGAGTTGGCCTTCAGTCCCAGTTTGGTCAGTTGTCCATGGACCTGCAAAACTGGTTAATCAGAACAAATTTTGTTAACTAAGGGGTAGTTATGCTTTGACGAATTTTGAACTGAAGAGCAGAGTAACAAGCCCTGTAATGACAAATCTTGTCAGCTAAGGGATATACAGCTTCGCAGAACATCACTCTTAACTCTGTAATGACAAATCTTGGATAGTCTTTCATGACGCATCACACGAATGCTGAATTGATGCTCAAAATGG] consensusID : consensus_15351#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 728 fasta sequence [TCCCCCCCNTGGGAATTNGNNCCCCCCCCCCGGGGCCGGTNCAACCTTNTTCAATCNNNNANTNCCCCTTTCTCCCCCCAAANTACCCNTCCCAAAAGATCACCTTCTGATAANTCCCGCNCCAGCNAACCTCCAGCCGNAAACTNAAGTTNCNGTGGGGTAAATCCCGCCGATGCCACCATGGCCTTAGCTGAGTTCCAACGTGACTGAACTCTACGATGCTGCTAAGCTGGAATCTAAAGCATGTCTCTGACGGGGCCAGGATCAAGACGATCTACCCAGTTGGTGTGAACTATCTTGGCGCCGAGAGCCACGTTTCATGGGAAAAATGGCCAAGGTCGTTCAAGACATCACTCTGAAGCTGAGCCAAGGTTGACCAGTGGCCCTGATCGTGCTGCAGCTGGAGTGGGTTCACGTCCCCAGGTGTTACCCTCTGAGCAGTGTCCGATGGTCGTTCGCATGGNAGCTGCAGGTGCAGCTGGTCTCTGAATGTGATATTGTAGCACTATGCGTGTGGACGTTGTTTGCAATGTGTACCTCCGATATGTGTGCTGTTGGTTTGTAGTTTCTGCGGTTATATTTGTACTCCTTAGTGTCAAGTGTTTGTGTCTATCAGTGTGTCACAATAAGAATCGAACCTGCTGAGGTNCATCTGGACCGAGATGTAAATTAAGAATTNCAGGTGTTNCATTATGTTGTAGAATTGTCCGATTTGTTNCCAATAGTAA] [-] EMBL AI096164 [TCCCCCCCNTGGGAATTNGNNCCCCCCCCCCGGGGCCGGTNCAACCTTNTTCAATCNNNNANTNCCCCTTTCTCCCCCCAAANTACCCNTCCCAAAAGATCACCTTCTGATAANTCCCGCNCCAGCNAACCTCCAGCCGNAAACTNAAGTTNCNGTGGGGTAAATCCCGCCGATGCCACCATGGCCTTAGCTGAGTTCCAACGTGACTGAACTCTACGATGCTGCTAAGCTGGAATCTAAAGCATGTCTCTGACGGGGCCAGGATCAAGACGATCTACCCAGTTGGTGTGAACTATCTTGGCGCCGAGAGCCACGTTTCATGGGAAAAATGGCCAAGGTCGTTCAAGACATCACTCTGAAGCTGAGCCAAGGTTGACCAGTGGCCCTGATCGTGCTGCAGCTGGAGTGGGTTCACGTCCCCAGGTGTTACCCTCTGAGCAGTGTCCGATGGTCGTTCGCATGGNAGCTGCAGGTGCAGCTGGTCTCTGAATGTGATATTGTAGCACTATGCGTGTGGACGTTGTTTGCAATGTGTACCTCCGATATGTGTGCTGTTGGTTTGTAGTTTCTGCGGTTATATTTGTACTCCTTAGTGTCAAGTGTTTGTGTCTATCAGTGTGTCACAATAAGAATCGAACCTGCTGAGGTNCATCTGGACCGAGATGTAAATTAAGAATTNCAGGTGTTNCATTATGTTGTAGAATTGTCCGATTTGTTNCCAATAGTAA] consensusID : consensus_15351#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 606 fasta sequence [TTCCAATCCTNTCTGGAATGAAGTACTGCAGCTCGCCGTCACAAATCCTACAAAGCCCGTAAAACTTGANGTTTTCGATGCGGATAAATTCACAGCNGATGACAGCATGGGCGTAGCTGAGTTCAACGTGACTGACATCTACGATGCTGCTAAGCTGGATCTAAAGCATGTCTCTGACGGGGCCNGGATCAAGACGATCTACCCNGTTGGTGTGAACTATCTTGGCGCAGAGAGCCACGTTTCATGGAAAAATGGCAAGGTCGTCCAAGACATCACTCTGAAGCTGAGCAAGGTTGACAGTGGCCTGATCGTGCTGCAGCTGGAGTGGGTTCACGTCCCNGGTGTTACCCTCTGAGCNGTGTCCGATGGTCGTCGATGGAGCTGCNGGTGCAGCTGGTCTCTGAATGTGATATTGTAGACTATGCGTGTGGACGTTGTTTGCAATGTGTACCTCCGATATGTGTGCTGTTGGTTTGTNGTTTCTGCGGTTATATTTGTACTCCTTNGTGTCAAGTGTTTGTGTCTATCAGTGTGTCACAATAAGAATCGACCTGCTGAGGTCATCTGGNGCGNNATGTAAATTAAGAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU031586 [TTCCAATCCTNTCTGGAATGAAGTACTGCAGCTCGCCGTCACAAATCCTACAAAGCCCGTAAAACTTGANGTTTTCGATGCGGATAAATTCACAGCNGATGACAGCATGGGCGTAGCTGAGTTCAACGTGACTGACATCTACGATGCTGCTAAGCTGGATCTAAAGCATGTCTCTGACGGGGCCNGGATCAAGACGATCTACCCNGTTGGTGTGAACTATCTTGGCGCAGAGAGCCACGTTTCATGGAAAAATGGCAAGGTCGTCCAAGACATCACTCTGAAGCTGAGCAAGGTTGACAGTGGCCTGATCGTGCTGCAGCTGGAGTGGGTTCACGTCCCNGGTGTTACCCTCTGAGCNGTGTCCGATGGTCGTCGATGGAGCTGCNGGTGCAGCTGGTCTCTGAATGTGATATTGTAGACTATGCGTGTGGACGTTGTTTGCAATGTGTACCTCCGATATGTGTGCTGTTGGTTTGTNGTTTCTGCGGTTATATTTGTACTCCTTNGTGTCAAGTGTTTGTGTCTATCAGTGTGTCACAATAAGAATCGACCTGCTGAGGTCATCTGGNGCGNNATGTAAATTAAGAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15351#1 ----------------------------------------AGTTTAGTGTTTTGCATTGT 20 consensus_15351#4 ------------------------------------------------------------ consensus_15351#3 ------------------------------------------------------------ consensus_15351#0 CACCAGCGACACCTACTACTCCTCCTCCCCTCCCCTCTCGAAACGCGGCTTCGACATGGC 60 consensus_15351#2 --------------------------CCCCTCCCCTCTCGAAACGCGGCTTCGACATGGC 34 consensus_15351#1 TGATTATGTAAACTGTAGCTTTTGCAGAGGCATACATGTTATATTCTTCG-GATGCTCAT 79 consensus_15351#4 ------------------------------------------------------------ consensus_15351#3 ------------------------------------------------------------ consensus_15351#0 GGCGGCGGCGGCGCACAAGGAGGAGGTGATCGGGAAGCTCAACGTCCGCGTGGTGCGGGG 120 consensus_15351#2 GGCGGCGGCGGCGCACAAGGAGGAGGTGATCGGGAAGCTCAACGTCCGCGTGGTGCGGGG 94 consensus_15351#1 CAATTTTTTATATGTTACTCCCAATCTTACCATATTTTTTTATCACTGAAGTGTTCTTTT 139 consensus_15351#4 ------------------------------------------------------------ consensus_15351#3 ------------------TCCCCCCCNTGGGAATTNGNNCCCCCCCCCCGGGGCCGGTNC 42 consensus_15351#0 CTCCAACCTCATCATCGCCGACCCGCTCACCCACACCAGCGACCCCTACGTCGTCCTCTC 180 consensus_15351#2 CTCCAACCTCATCATCGCCGACCCGCTCACCCACACCAGCGACCCCTACGTCGTCCTCTC 154 consensus_15351#1 ACTGATGGTATAGAAAGTGAAGACCAGTGTCCAGAAGAAGAATTCCAATCCTGTCTGGAA 199 consensus_15351#4 ------------------------------------------TTCCAATCCTNTCTGGAA 18 consensus_15351#3 AACCTTN-TTCAATCNNNNANTNCCCCTTTCTCCCCCCAAANTACCCNTCCCAA--AAGA 99 consensus_15351#0 CTACGGCCCACAGAAAGTGAAGACCAGTGTCCAGAAGAAGAATTCCAATCCTGTCTGGAA 240 consensus_15351#2 CTACGGCCCACAGGTCCGCCACCGCCATACCCATGTTC----CCTTAATTTCTTCCTTTC 210 * consensus_15351#1 TGAAGTACTGCAGCTCGCAGTCACAAATCCTACAAAGCCAGTAAAACTTGAAGTTTTCGA 259 consensus_15351#4 TGAAGTACTGCAGCTCGCCGTCACAAATCCTACAAAGCCCGTAAAACTTGANGTTTTCGA 78 consensus_15351#3 TCACCTTCTGATAANTCCCGCNCCAGCNAACCTCCAGCCGN--AAACTNAAG--TTNCNG 155 consensus_15351#0 TGAAGTACTGCAGCTCGCAGTCACAAATCCTACAAAGCCAGTAAAACTTGAAGTTTTCGA 300 consensus_15351#2 TTGCGTTTGGGGATCCTTCGTGACTGA-CCTCCGCATTTTG-GGGATCCGGGGCTCGGGA 268 * * * * * * * * consensus_15351#1 TGAGGATAAATTCACAGCAGATGACAGCATGGGCGTAGCTGAGTTC-AACGTGACTGACA 318 consensus_15351#4 TGCGGATAAATTCACAGCNGATGACAGCATGGGCGTAGCTGAGTTC-AACGTGACTGACA 137 consensus_15351#3 TG-GGGTAAATCCC--GCCGATGCCACCATGGCCTTAGCTGAGTTCCAACGTGACTGAAC 212 consensus_15351#0 TGAGGATAAATTCACAGCAGATGACAGCATGGGCGTAGCTGAGTTC-AACGTGACTGACA 359 consensus_15351#2 CGGGGGGGTCTTCGATCGATCTGCCGCGGTATCCGTACGTGAAGCCAAGAAATGTTGGCG 328 * ** * * ** * * * ** *** * * ** consensus_15351#1 TCTACGATGCTGCTAAGCTGGA-TCTAAAGCATGTCTCTGACGGGGCCAGGATCAAGACG 377 consensus_15351#4 TCTACGATGCTGCTAAGCTGGA-TCTAAAGCATGTCTCTGACGGGGCCNGGATCAAGACG 196 consensus_15351#3 TCTACGATGCTGCTAAGCTGGAATCTAAAGCATGTCTCTGACGGGGCCAGGATCAAGACG 272 consensus_15351#0 TCTACGATGCTGCTAAGCTGGA-TCTAAAGCATGTCTCTGACGGGGCCAGGATCAAGACG 418 consensus_15351#2 TCCGCTTTG-TCCGGGACCGGGGTGCGAATC-TGTCGCTGTGTGTGCTCA---CAAGGTG 383 ** * ** * * * ** * ** * **** *** * ** **** * consensus_15351#1 ATCTACCCAGTTGGTGTGAACTATCTTGGCGCAGAGAGCCACGTTTCATGG-AAAAATGG 436 consensus_15351#4 ATCTACCCNGTTGGTGTGAACTATCTTGGCGCAGAGAGCCACGTTTCATGG-AAAAATGG 255 consensus_15351#3 ATCTACCCAGTTGGTGTGAACTATCTTGGCGCCGAGAGCCACGTTTCATGGGAAAAATGG 332 consensus_15351#0 ATCTACCCAGTTGGTGTGAACTATCTTGGCGCAGAGAGCCACGTTTCATGG-AAAAATGG 477 consensus_15351#2 -TTTGATAAGATGGCGACATGTTCGCGACTTTCCAGGGATTTTTTTTTTGG------CCT 436 * * * *** * * * ** * *** *** consensus_15351#1 C-AAGGTCGTCCAAGACATCACTCTGAAGCTGAGC-AAGGTTGAC-AGTGGCC-TGATCG 492 consensus_15351#4 C-AAGGTCGTCCAAGACATCACTCTGAAGCTGAGC-AAGGTTGAC-AGTGGCC-TGATCG 311 consensus_15351#3 CCAAGGTCGTTCAAGACATCACTCTGAAGCTGAGCCAAGGTTGACCAGTGGCCCTGATCG 392 consensus_15351#0 CAAGGGTCGTCCAAGACATCACTCTGAAGCTGAGC-AAGGTTGAC-AGTGGCC-TGATCG 534 consensus_15351#2 TTCGATTTGATAGGGTGACTGACTGCCAGTTGAGCTAAACAGGACGCTTAAAT-TCGCAT 495 * * * * ** ***** ** *** * * consensus_15351#1 TGCTGCAGCTGGAG----TGGGTTCACGTCCC-AGGTGTTACCCTCTGAGCAGTGTCCGA 547 consensus_15351#4 TGCTGCAGCTGGAG----TGGGTTCACGTCCC-NGGTGTTACCCTCTGAGCNGTGTCCGA 366 consensus_15351#3 TGCTGCAGCTGGAG----TGGGTTCACGTCCCCAGGTGTTACCCTCTGAGCAGTGTCCGA 448 consensus_15351#0 TGCTGCAGCTGGAG----TGGGTTCACGTCCC-AGGTGTTACCCTCTGAGCAGTGTCCGA 589 consensus_15351#2 TGCTGAATTTAAAAATTCTGAATTTTGGTCGGTTTGAGTTGGCCTTCAGTCCCAGTTTGG 555 ***** * * * ** ** *** * *** *** * ** * consensus_15351#1 T-GGTCGTCGAT---GGAGCTGCAGGTGCAGCTGGTCTCTGAATGTGATATTGTAG-ACT 602 consensus_15351#4 T-GGTCGTCGAT---GGAGCTGCNGGTGCAGCTGGTCTCTGAATGTGATATTGTAG-ACT 421 consensus_15351#3 T-GGTCGTTCGCATGGNAGCTGCAGGTGCAGCTGGTCTCTGAATGTGATATTGTAGCACT 507 consensus_15351#0 T-GGTCGTCGAT---GGAGCTGCAGGTGCAGCTGGTCTCTGAATGTGATATTGTAG-ACT 644 consensus_15351#2 TCAGTTGTCCAT---GGACCTGCAAAACTGGTTAATC--AGAACA-AATTTTGTTA-ACT 608 * ** ** * * **** * * ** *** ** **** *** consensus_15351#1 ATGCGTGTGGACGTTGTTTGCAATGTGTACCTCCGATATGTGTGCTGTTGGTTTGTAGTT 662 consensus_15351#4 ATGCGTGTGGACGTTGTTTGCAATGTGTACCTCCGATATGTGTGCTGTTGGTTTGTNGTT 481 consensus_15351#3 ATGCGTGTGGACGTTGTTTGCAATGTGTACCTCCGATATGTGTGCTGTTGGTTTGTAGTT 567 consensus_15351#0 ATGCGTGTGGACGTTGTTTGCAATGTGTACCTCCGATATGTGTGCTGTTGGTTTGTAGTT 704 consensus_15351#2 AAGGG-GTAGTTATGCTTTGACGAATTTTGAACTGAAGAGCAGAGTAACAAGCCCTGTAA 667 * * * ** * * **** * * * ** * * * consensus_15351#1 TCTGCGGTTATATTTGTACTCCTTAGTGTCAAGTGTTTGTGTCTATCAGTGT-GTCACAA 721 consensus_15351#4 TCTGCGGTTATATTTGTACTCCTTNGTGTCAAGTGTTTGTGTCTATCAGTGT-GTCACAA 540 consensus_15351#3 TCTGCGGTTATATTTGTACTCCTTAGTGTCAAGTGTTTGTGTCTATCAGTGT-GTCACAA 626 consensus_15351#0 TCTGCGGTTATATTTGTACTCCTTAGTGTCAAGTGTTTGTGTCTATCAGTGT-GTCACAA 763 consensus_15351#2 TGACAAATCTTGTCAG--CTAAGGGATATACAGCTTCGCAGAACATCACTCTTAACTCTG 725 * * * * * ** * * ** * * **** * * * * consensus_15351#1 TAAGAATCGA-CCTGCTGAGGTC-ATCTGGAGCGAGATGTAAATTAAGAATTC-AGGTGT 778 consensus_15351#4 TAAGAATCGA-CCTGCTGAGGTC-ATCTGGNGCGNNATGTAAATTAAGAAAAA-AAAAAA 597 consensus_15351#3 TAAGAATCGAACCTGCTGAGGTNCATCTGGACCGAGATGTAAATTAAGAATTNCAGGTGT 686 consensus_15351#0 TAAGAATCGA-CCTGCTGAGGTC-ATCTGGAGCGAGATGTAAATTAAGAATTC-AGGTGT 820 consensus_15351#2 TAATGACAAATCTTGGATAGTCTTTCATGACGCATCACACGAATGCTGAATTG---ATGC 782 *** * * * ** ** ** * * *** *** consensus_15351#1 TC-ATTATGTTGTAGAATTGTCCGATTTGTTCC-AATAGTAATGCTTTCGATGTCTAAAA 836 consensus_15351#4 AA-AAAAAAA-------------------------------------------------- 606 consensus_15351#3 TNCATTATGTTGTAGAATTGTCCGATTTGTTNCCAATAGTAA------------------ 728 consensus_15351#0 TC-ATTATGTTGTAGAATTGTCCGATTTGTTCC-AATAGTAATGCTTTCGATGTCTAAAA 878 consensus_15351#2 TC-AAAATGG-------------------------------------------------- 791 * * consensus_15351#1 AAAAAAAAAAAAACCTCGTGCC-------------------------------------- 858 consensus_15351#4 ------------------------------------------------------------ consensus_15351#3 ------------------------------------------------------------ consensus_15351#0 AATAGAAGTGTTCCAACTTTTTTATTCCATGATCTTTAAAAAAAAAGTAATACTTTCGAT 938 consensus_15351#2 ------------------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||