These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15368#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 928 fasta sequence [TCCTTTTTATTTTTTTTTTTTTTTTCTGTAACAGGTGGTATGGCCTTTAATTATGTGTATGTACACAAAACAAACTACGCTTCCATCATGTGAGTAAAATCTCTGTTATCTAAATTATTCTGGCATGTACATGTGTGGTACATATATAAATCAATATTTGAAAACAGGGAACAATGGACGTAAAACACAGCCGATTCGATCGAACAGTCTGACACAAATAAAATTCGATTGGAAAATTGACTAATGAATGAATGAATGAATTAGTATATCCAGCGTAAAGCAATTCCTACAATGGTAAAATCTCTATCTGAAAAAAGAAAAATAATGAATGCAATAGCCACAATCGTGCACCAATATGTACAGGCAGCAATCGCACGAATCTAAACGAAGAGCTCGAGCAGAACGGGCGGCGCGTGCACCGCCGCGGCGGCGGCGGCGGCCTCCTCGCGGTGGCGGCGCATGTGGCCGCCGAGCGCCTGGCCCATCTCGAAGCCTTGGCCGCAGATGTGGCACTCGTGGGTCGCCGCCGCCGCCGGCTTCTCCTGCACCTTCTTGGTGGTCTCCTTGGCCGTGGCGGCGGCGAGGCCGAGCGCGAGCCCGTGGCGGCCGCGCAGGTGGCTGGTCCGGTGGCCGCCCAGCGCCTGGAACGACGGGAACGCGCGGCTGCACGTCTTGCAGACGAAGTCCCCACTCCCGGACGCCGCCGGCGACGACCCGCGCCGCGGCTTCTTCCGCTCGCCGCTATCCGCGGCAGCGCCGAGCGTGAGCGACAGCGAGAGGCTGATCACCTCGCCGTCCCTCGGATGCTTGGTCATGGTCAAGAAAGAAACCGAACGAACTGGAGATCGATCGAACACAAGATGATCGACGAGACGAGTTTTAGCTAGCTAGCTTCTGACTCGATCGAGAGAATGGTTAATATTGCTGT] [+] EMBL CB679157 [TCCTTTTTATTTTTTTTTTTTTTTTCTGTAACAGGTGGTATGGCCTTTAATTATGTGTATGTACACAAAACAAACTACGCTTCCATCATGTGAGTAAAATCTCTGTTATCTAAATTATTCTGGCATGTACATGTGTGGTACATATATAAATCAATATTTGAAAACAGGGAACAATGGACGTAAAACACAGCCGATTCGATCGAACAGTCTGACACAAATAAAATTCGATTGGAAAATTGACTAATGAATGAATGAATGAATTAGTATATCCAGCGTAAAGCAATTCCTACAATGGTAAAATCTCTATCTGAAAAAAAAAAAATAATGAATGCAATAGCCACAATCGTGCACCAATATGTACAGGCAGCAATCGCACGAATCTAAACGAAAAGCTCGAGCAAAACGGGCGGCGCGTGCACCGCCGCGGCGGCGGCGGCGGCCTCCTCGCGGTGGCGGCGCATGTGGCCGCCGAGCGCCTGGCCCATCTCAAAGCCTTGGCCGCAAATGTGGCACTCGTGGGTCGCCGCCGCCGCCGGCTTCTCCTGCACCTTCTTGGTGGTCTCCTTGGCCGTGGCGGCGGCAAGGCCAAGCGCGAGCCCGTGGCGGCCGCGCAGGTGGCTGGTCCGGTGGCCGCCCAGCGCCTGGAACAACGGGAACGCGCGGCTGCACGTCTTGCAAACAAAGTCCC ] [-] EMBL AY305864 [ TGAATGAATTAGTATATCCAGCGTAAAGCAATTCCTACAATGGTAAAATCTCTATCTGAAAAAAGAAAAATAATGAATGCAATAGCCACAATCGTGCACCAATATGTACAGGCAGCAATCGCACGAATCTAAACGAAGAGCTCGAGCAGAACGGGCGGCGCGTGCACCGCCGCGGCGGCGGCGGCGGCCTCCTCGCGGTGGCGGCGCATGTGGCCGCCGAGCGCCTGGCCCATCTCGAAGCCTTGGCCGCAGATGTGGCACTCGTGGGTCGCCGCCGCCGCCGGCTTCTCCTGCACCTTCTTGGTGGTCTCCTTGGCCGTGGCGGCGGCGAGGCCGAGCGCGAGCCCGTGGCGGCCGCGCAGGTGGCTGGTCCGGTGGCCGCCCAGCGCCTGGAACGACGGGAACGCGCGGCTGCACGTCTTGCAGACGAAGTCCCCACTCCCGGACGCCGCCGGCGACGACCCGCGCCGCGGCTTCTTCCGCTCGCCGCTATCCGCGGCAGCGCCGAGCGTGAGCGACAGCGAGAGGCTGATCACCTCGCCGTCCCTCGGATGCTTGGTCATGGTCAAGAAAGAAACCGAACGAACTGGAGATCGATCGAACACAAGATGATCGACGAGACGAGTTTTAGCTAGCTAGCTTCTGACTCGATCGAGAGAATGGT ] [-] EMBL AK119690 [ ATTAGTATATCCAGCGTAAAGCAATTCCTACAATGGTAAAATCTCTATCTGAAAAAAGAAAAATAATGAATGCAATAGCCACAATCGTGCACCAATATGTACAGGCAGCAATCGCACGAATCTAAACGAAGAGCTCGAGCAGAACGGGCGGCGCGTGCACCGCCGCGGCGGCGGCGGCGGCCTCCTCGCGGTGGCGGCGCATGTGGCCGCCGAGCGCCTGGCCCATCTCGAAGCCTTGGCCGCAGATGTGGCACTCGTGGGTCGCCGCCGCCGCCGGCTTCTCCTGCACCTTCTTGGTGGTCTCCTTGGCCGTGGCGGCGGCGAGGCCGAGCGCGAGCCCGTGGCGGCCGCGCAGGTGGCTGGTCCGGTGGCCGCCCAGCGCCTGGAACGACGGGAACGCGCGGCTGCACGTCTTGCAGACGAAGTCCCCACTCCCGGACGCCGCCGGCGACGACCCGCGCCGCGGCTTCTTCCGCTCGCCGCTATCCGCGGCAGCGCCGAGCGTGAGCGACAGCGAGAGGCTGATCACCTCGCCGTCCCTCGGATGCTTGGTCATGGTCAAGAAAGAAACCGAACGAACTGGAGATCGATCGAACACAAGATGATCGACGAGACGAGTTTTAGCTAGCTAGCTTCTGACTCGATCGAGAGAATGGTTAATATTGCTGT] [-] EMBL AY286473 [ CAATCGCACGAATCTAAACGAAGAGCTCGAGCAGAACGGGCGGCGCGTGCACCGCCGCGGCGGCGGCGGCGGCCTCCTCGCGGTGGCGGCGCATGTGGCCGCCGAGCGCCTGGCCCATCTCGAAGCCTTGGCCGCAGATGTGGCACTCGTGGGTCGCCGCCGCCGCCGGCTTCTCCTGCACCTTCTTGGTGGTCTCCTTGGCCGTGGCGGCGGCGAGGCCGAGCGCGAGCCCGTGGCGGCCGCGCAGGTGGCTGGTCCGGTGGCCGCCCAGCGCCTGGAACGACGGGAACGCGCGGCTGCACGTCTTGCAGACGAAGTCCCCACTCCCGGACGCCGCCGGCGACGACCCGCGCCGCGGCTTCTTCCGCTCGCCGCTATCCGCGGCAGCGCCGAGCGTGAGCGACAGCGAGAGGCTGATCACCTCGCCGTCCCTCGGATGCTTGGTC ] [+] EMBL CB966330 [ AGGTGGCTGGTCCGGTGGCCGCCCAGCGCCTGGAACGACGGGAACGCGCGGCTGCACGTCTTGCAGACGAAGTCCCCACTCCCGGACGCCGCCGGCGACGACCCGCGCCGCGGCTTCTTCCGCTCGCCGCTATCCGCGGCAGCGCCGAGCGTGAGCGACAGCGAGAGGCTGATCACCTCGCCGTCCCTCGGATGCTTGGTCATGGTCAAGAAAGAAACCGAACGAACTGGAGATCGATCGAACACAAGATGATCGACGAGACGAGTTTTAGCTAGCTAGCTTCTGACTCGATCGAGAGAATGG ] [+] EMBL CB967030 [ AGGTGGCTGGTCCGGTGGCCG CCAGCGCCTGGAACGACGGGAACGCGCGGCTGCACGTC TGCAGACGAAGTCCCCACTCCCGGACGCCGCCGGCGACGACCCGCGCCGCGGCTTCTTCCGCTCGCCGCTATCCGCGGCAGCGCCGAGCGTGAGCGACAGCGAGAGGCTGATCACCTCGCCGTCCCTCGGATGCTTGGTCATGGTCAAGAAAGAAACCGAACGAACTGGAGATCGATCGAACACAAGATGATCGACGAGACGAGTTTTAGCTAGCTAGCTTCTGACTCGATCGAGAGAATGG ] [+] EMBL BU673467 [ GCTGGTCCGGTGGCCGCCCAGCGCCTGGAACGACGGGAACGCGCGGCTGCACGTCTTGCAGACGAAGTCCCCACTCCCGGACGCCGCCGGCGACGACCCGCGCCGCGGCTTCTTCCGCTCGCCGCTATCCGCGGCAGCGCCGAGCGTGAGCGACAGCGAGAGGCTGATCACCTCGCCGTCCCTCGGATGCTTGGTCATGGTCAAGAAAGAAACCGAACGAACTGGAGATCGATCGAACACAAGATGATCGACGAGACGAGTTTTAGCTAGCTAGCTTCTGACTCGATCGAGAGAATGG ] [+] EMBL BU673802 [ CTGGTCCGGTGGCCGCCCAGCGCCTGGAACGACGGGAACGCGCGGCTGCACGTCTTGCAGACG AGTCCCCACTCCCGGACGCCGCCGGCGACGACCCGCGCCGCGGCTTCTTCCGCTCGCCGCTATCCGCGGCAGCGCCGAGCGTGAGCGACAGCGAGAGGCTGATCACCTCGCCGTCCCTCGGATGCTTGGTCATGGTCAAGAAAGAAACCGAACGAACTGGAGATCGATCGAACACAAGATGATCGACGAGACGAGTTTTAGCTAGCTAGCTTCTGACTCGATCGAGAGAATGG ] [+] EMBL BI306687 [ TGGTCCGGTGGCCGCCCAGCGCCTGGAACGACGGGAACGCGCGGCTGCACGTCTTGCAGACGAAGTCCCCACTCCCGGACGCCGCCGGCGACGACCCGCGCCGCGGCTTCTTCCGCTCGCCGCTATCCGCGGCAGCGCCGAGCGTGAGCGACAGCGAGAGGCTGATCACCTCGCCGTCCCTCGGATGCTTGGTCATGGTCAAGAAAGAAACCGAACGAACTGGAGATCGATCGAACACAAGATGATCGACGAGACGAGTTTTAGCTAGCTAGCTTCTGACTCGATCGAGAGAATGGTTAATATTGC ] [+] EMBL BI306031 [ TGGTCCGGTGGCCGCCCAGCGCCTGGAACGACGGGAACGCGCGGCTGCACGTCTTGCAGACGAAGTCCCCACTCCCGGACGCCGCCGGCGACGACCCGCGCCGCGGCTTCTTCCGCTCGCCGCTATCCGCGGCAGCGCCGAGCGTGAGCGACAGCGAGAGGCTGATCACCTCGCCGTCCCTCGGATGCTTGGTCATGGTCAAGAAAGAAACCGAACGAACTGGAGATCGATCGAACACAAGATGATCGACGAGACGAGTTTTAGCTAGCTAGCTTCTGACTCGATCGAGAGAATGGTTAATATTGC ] [+] EMBL CB965506 [ TGGTCCGGTGGCCGCCCAGCGCCTGGAACGACGGGAACGCGCGGCTGCACGTCTTGCAGACGAAGTCCCCACTCCCGGACGCCGCCGGCGACGACCCGCGCCGCGGCTTCTTCCGCTCGCCGCTATCCGCGGCAGCGCCGAGCGTGAGCGACAGCGAGAGGCTGATCACCTCGCCGTCCCTCGGATGCTTGGTCATGGTCAAGAAAGAAACCGAACGAACTGGAGATCGATCGAACACAAGATGATCGACGAGACGAGTTTTAGCTAGCTAGCTTCTGACTCGATCGAGAGAATGGT ] [+] EMBL CB965847 [ TGGTCCGGTGGCCGCCCAGCGCCTGGAACGACGGGAACGCGCGGCTGCACGTCTTGCAGACGAAGTCCCCACTCCCGGACGCCGCCGGCGACGACCCGCGCCGCGGCTTCTTCCGCTCGCCGCTATCCGCGGCAGCGCCGAGCGTGAGCGACAGCGAGAGGCTGATCACCTCGCCGTCCCTCGGATGCTTGGTCATGGTCAAGAAAGAAACCGAACGAACTGGAGATCGATCGAACACAAGATGATCGACGAGACGAGTTTTAGCTAGCTAGCTTCTGACTCGATCGAGAGAATGG ] [+] EMBL CB965279 [ TGGTCCGGTGGCCGCCCAGCGCCTGGAACGACGGGAACGCGCGGCTGCACGTCTTGCAGACGAAGTCCCCACTCCCGGACGCCGCCGGCGACGACCCGCGCCGCGGCTTCTTCCGCTCGCCGCTATCCGCGGCAGCGCCGAGCGTGAGCGACAGCGAGAGGCTGATCACCTCGCCGTCCCTCGGATGCTTGGTCATGGTCAAGAAAGAAACCGAACGAACTGGAGATCGATCGAACACAAGATGATCGACGAGACGAGTTTTAGCTAGCTAGCTTCTGACTCGATCGAGAGAATGG ] consensusID : consensus_15368#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 866 fasta sequence [CGAGTTTTTTTTTTTTTTTTTTAGCTATGAATGAAGAAATTATATTACATCTGTGTGTGTATATACATCTGAACTCAACAAATCTCCACCAAACGGTTCAAAAACTGACCGATTCAAAACCGAACAACCCAAACGCTAATGAAAAAAAAAATTAAACCCCTATCATAGTTACAAGATCGATGAACCTGACTTTTTTTTTCTAGACATGTACATGAACTAATTAATGGTGACACACACTGCGTCAGTTCAAAACTTGGACGAAACTAATGGAGACCAGCGGTAACTAGGCGAACAACTCCAGCAACACCGGTGGCTCGGCGGCGATCCCCTCCGGCCGCGCGTCGCAGCGCCAGACCCAGTCGTCGGCGGAGGATCCACCGCCGGCGGCGGCCATCTCCTCGCGGTGGCGCCGCATGTGTCCGCCGAGCGCCTGGCCCATCTCGAAGCCGAGGCCGCAGATGTGGCACTCGTGCTTGTCCCTGTGCTCCTTGTCGGCCGCCCTGTGCAGCCTGATCGCCTTGTCGCCGATGGCGCCGAGGTCGAGCCCGTTGCTCCGGCCGCGGAGGTGGCTGGTCCGGTGGCCCCCGAGCGCCTGGAAGGTCGGGAACGCGCGGCTGCAAGTCTTGCACACGAACTCCCCTTCCCCCGACGTCGCCACCACGCTCCTCCGCCGCGCCCTCTTCCTCCTCGCCGCGCCGCCCGCCGCCGCCGCCGACGAGTCCGACGCCGTCGACGAGCAGTCCGTGCTCAGCGCCAGCGCCAGCGACACCTCCTCCTCCTGCCTCGGGTGCTTCATCCCCGATTCGATAAGCTTGTGAATTAATGGATCGATGGATTGAGAGAGAGATTTTTGGTTGGGGGGAGAT] [-] EMBL CF303437 [CGAGTTTTTTTTTTTTTTTTTTAGCTATGAATGAAGAAATTATATTACATCTGTGTGTGTATATACATCTGAACTCAACAAATCTCCACCAAACGGTTCAAAAACTGACCGATTCAAAACCGAACAACCCAAACGCTAATGAAAAAAAAAATTAAACCCCTATCATAGTTACAAGATCGATGAACCTGACTTTTTTTTTCTAGACATGTACATGAACTAATTAATGGTGACACACACTGCGTCAGTTCAAAACTTGGACGAAACTAATGGAGACCAGCGGTAACTAGGCGAACAACTCCAGCAACACCGGTGGCTCGGCGGCGATCCCCTCCGGCCGCGCGTCGCAGCGCCAGACCCAGTCGTCGGCGGAGGATCCACCGCCGGCGGCGGCCATCTCCTCGCGGTGGCGCCGCATGTGTCCGCCGAGCGCCTGGCCCATCTCGAAGCCGAGGCCGCAGATGTGGCACTCGTGCTTGTCCCTGTGCTCCTTGTCGGCCGCCCTGTGCAGCCTGATCGCCTTGTCGCCGATGGCGCCGAGGTCGAGCCCGTTGCTCCGGCCGC ] [-] EMBL AK068861 [ GAAAGAATTATATTACATCTGTGTGTGTATATACATCTGAACTCAACAAATCTCCACCAAACGGTTCAAAAACTGACCGATTCAAAACCGAACAACCCAAACGCTAATG AAAAAAAAATTAAACCCCTATCATAGTTACAAGATCGATGAACCTGACTTTTTTTTTCTAGACATGTACATGAACTAATTAATGGTGACACACACTGCGTCAGTTCAAAACTTGGACGAAACTAATGGAGACCAGCGGTAACTAGGCGAACAACTCCAGCAACACCGGTGGCTCGGCGGCGATCCCCTCCGGCCGCGCGTCGCAGCGCCAGACCCAGTCGTCGGCGGAGGATCCACCGCCGGCGGCGGCCATCTCCTCGCGGTGGCGCCGCATGTGTCCGCCGAGCGCCTGGCCCATCTCGAAGCCGAGGCCGCAGATGTGGCACTCGTGCTTGTCCCTGTGCTCCTTGTCGGCCGCCCTGTGCAGCCTGATCGCCTTGTCGCCGATGGCGCCGAGGTCGAGCCCGTTGCTCCGGCCGCGGAGGTGGCTGGTCCGGTGGCCCCCGAGCGCCTGGAAGGTCGGGAACGCGCGGCTGCAAGTCTTGCACACGAACTCCCCTTCCCCCGACGTCGCCACCACGCTCCTCCGCCGCGCCCTCTTCCTCCTCGCCGCGCCGCCCGCCGCCGCCGCCGACGAGTCCGACGCCGTCGACGAGCAGTCCGTGCTCAGCGCCAGCGCCAGCGACACCTCCTCCTCCTGCCTCGGGTGCTTCATCCCCGATTCGATAAGCTTGTGAATTAATGGATCGATGGATTGAGAGAGAGATTTTTGGTTGGGGGGAGAT] [-] EMBL AY286474 [ CGGTAACTAGGCGAACAACTCCAGCAACACCGGTGGCTCGGCGGCGATCCCCTCCGGCCGCGCGTCGCAGCGCCAGACCCAGTCGTCGGCGGAGGATCCACCGCCGGCGGCGGCCATCTCCTCGCGGTGGCGCCGCATGTGTCCGCCGAGCGCCTGGCCCATCTCGAAGCCGAGGCCGCAGATGTGGCACTCGTGCTTGTCCCTGTGCTCCTTGTCGGCCGCCCTGTGCAGCCTGATCGCCTTGTCGCCGATGGCGCCGAGGTCGAGCCCGTTGCTCCGGCCGCGGAGGTGGCTGGTCCGGTGGCCCCCGAGCGCCTGGAAGGTCGGGAACGCGCGGCTGCAAGTCTTGCACACGAACTCCCCTTCCCCCGACGTCGCCACCACGCTCCTCCGCCGCGCCCTCTTCCTCCTCGCCGCGCCGCCCGCCGCCGCCGCCGACGAGTCCGACGCCGTCGACGAGCAGTCCGTGCTCAGCGCCAGCGCCAGCGACACCTCCTCCTCCTGCCTCGGGTGCTTCATCt ] consensusID : consensus_15368#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 560 fasta sequence [GGGCTCGGGTTTGGCCTCGCCGCCGCCACGGCCAAGGAGACCCCCAAGAAGGTGCAGGAGAAGCCGGCGGCGGCGGCGACCCACGAGTGCCACATCTGCGGCCAAGGCTTCGAGATGGGCCAGGCGCTCGGCGGCCACATGCCCCGCCCCCGCGAGGAGGCCGCCGCCGCCGCCGCGGCCGCCGGCTTCTCCTGCACCTTCTTGGTGGTCTCCTTGGCCGTGGCGGCGGCGAGGCCGAGCGCGAGCCCGTGGCGGCCGCGCAGGTGGCTGGTCCGGTGGCCGCCCAGCGCCTGGAACGACGGGAACGCGCGGCTGCACGTCTTGCAGACGAAGTCCCCACTCCCG-GACGCCGCCG-GCGACGACCCGCGCCGC-GGCTTCTTCC-GCTCGCCG-C-TATCCGCGGCAGCGCCG-AGCGTGAGCGACAGCGA-GAGGCTGATCACCTCGCCGTCCCTCGGATGCTTGGTCATGGTCAAGAAAGAAACCGAACGAACTGGAGATCGATCGAACACAAGATGATCGACGAGACGAGTTTTAGCTAGCTAGCTTCTGACTCGATCGAGAGA] [-] EMBL CB679156 [GGGCTCGGGTTTGGCCTCGCCGCCGCCACGGCCAAGGAGACCCCCAAGAAGGTGCAGGAGAAGCCGGCGGCGGCGGCGACCCACGAGTGCCACATCTGCGGCCAAGGCTTCGAGATGGGCCAGGCGCTCGGCGGCCACATGCCCCGCCCCCGCGAGGAGGCCGCCGCCGCCGCCGCGGCCGCCGGCTTCTCCTGCACCTTCTTGGTGGTCTCCTTGGCCGTGGCGGCGGCGAGGCCGAGCGCGAGCCCGTGGCGGCCGCGCAGGTGGCTGGTCCGGTGGCCGCCCAGCGCCTGGAACGACGGGAACGCGCGGCTGCACGTCTTGCAGACGAAGTCCCCACTCCCG GACGCCGCCG GCGACGACCCGCGCCGC GGCTTCTTCC GCTCGCCG C TATCCGCGGCAGCGCCG AGCGTGAGCGACAGCGA GAGGCTGATCACCTCGCCGTCCCTCGGATGCTTGGTCATGGTCAAGAAAGAAACCGAACGAACTGGAGATCGATCGAACACAAGATGATCGACGAGACGAGTTTTAGCTAGCTAGCTTCTGACTCGATCGAGAGA] [+] EMBL BU673650 [ TGGTCCGGTGGCCGCCCAGCGCCTGGAACGACGGGAACGCGCGGCTGCACGTCTTGCAGACGAAGTCCCCACTCCCGAGACGCCGCCGTGCGACGACCCGCGCCGCTGGCTTCTTCCTGCTCGCCGACATATCCGCGGCAGCGCCGAAGCGTGAGCGACAGCGACGAGG ] consensusID : consensus_15368#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 395 fasta sequence [CGTTTCGTTTTTTTAATGAATGAATGAATGAATTAGTATATCCAGCGTAAAGCAATTCCTACAATGGTAAAATCTCTATCTGAAAAAAGAAAAATAATGAATGCAATAGCCACAATCGTGCACCAATATGTACAGGCAGCAATCGCACGAATCTAAACGAAGAGCTCGAGCAGAACGGGCGGCGCGTGCACCGCCGCGGCGGCGGCGGCGGCCTCCTCGCGGTGGCGGCGCATGTGGCCGCCGAGCGCCTGGCCCATCTCGAAGCCTTGGCCGCAGATGTGGCACTCGTGGGTCGCCGCCGCCGCCGGCTTCTCCTGCACCTTCTTGGTGGTCTCCTTGGCCGTGGCGGCGGCGAGGCCGAGCGCGAGCCCGTGGCGGCCGCGCAGGTGGCTGGT] [-] EMBL CA755660 [CGTTTCGTTTTTTTAATGAATGAATGAATGAATTAGTATATCCAGCGTAAAGCAATTCCTACAATGGTAAAATCTCTATCTGAAAAAAGAAAAATAATGAATGCAATAGCCACAATCGTGCACCAATATGTACAGGCAGCAATCGCACGAATCTAAACGAAGAGCTCGAGCAGAACGGGCGGCGCGTGCACCGCCGCGGCGGCGGCGGCGGCCTCCTCGCGGTGGCGGCGCATGTGGCCGCCGAGCGCCTGGCCCATCTCGAAGCCTTGGCCGCAGATGTGGCACTCGTGGGTCGCCGCCGCCGCCGGCTTCTCCTGCACCTTCTTGGTGGTCTCCTTGGCCGTGGCGGCGGCGAGGCCGAGCGCGAGCCCGTGGCGGCCGCGCAGGTGGCTGGT] consensusID : consensus_15368#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 363 fasta sequence [TTTGAACTGACGCAGTGTGTGTCACCATTAATTAGTTCATGTACATGTCTAGAAAAAAAAGTCAGGTTCATCGATCTTGTAACTATGATAGGGGTTTAATTTTTTTTTTCATTAGCGTTTGGGTTGTTCGGTTTTGAATCGGTCAGTTTTTGAACCGTTTGGTGGAGATTTGTTGAGTTCAGATGTATATACACACACAGATGTAATATAATTCTTTCATTCATAGCTATACCTCTTGTAAATATATGCAACATTTATGTTTGTGCCAGAAATAAATTCAGCGCGCTGTTCCTCCTGAAAAAAAAAAAAAAAAAAAAACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CF309128 [TTTGAACTGACGCAGTGTGTGTCACCATTAATTAGTTCATGTACATGTCTAGAAAAAAAAGTCAGGTTCATCGATCTTGTAACTATGATAGGGGTTTAATTTTTTTTTTCATTAGCGTTTGGGTTGTTCGGTTTTGAATCGGTCAGTTTTTGAACCGTTTGGTGGAGATTTGTTGAGTTCAGATGTATATACACACACAGATGTAATATAATTCTTTCATTCATAGCTATACCTCTTGTAAATATATGCAACATTTATGTTTGTGCCAGAAATAAATTCAGCGCGCTGTTCCTCCTGAAAAAAAAAAAAAAAAAAAAACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_15368#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 322 fasta sequence [AAGGGAATAGCTGCGGCGCGCAGGTGGCTGGTCGGTGGCCGCCAGCGCCTGGAACGACGGGAACGCGCGGCTGCACGTCTTGCAGACGAAGTCCCCACTCCCGGACGCCGCCGGCGACGACCCGCGCCGCGGCTTCTTCCGCTCGCCGCTATCCGCGGCAGCGCCGAGCGTGAGCGACAGCGAGAGGCTGATCACCTCGCCGTCCCTCGGATGCTTGGTCATGGTCAAGAAAGAAACCGAACGAACTGGAGATCGATCGAACACAAGATGATCGACGAGACGAGTTTTAGCTAGCTAGCTTCTGACTCGATCGAGAGAATGG] [+] EMBL CB964817 [AAGGGAATAGCTGCGGCGCGCAGGTGGCTGGTCGGTGGCCGCCAGCGCCTGGAACGACGGGAACGCGCGGCTGCACGTCTTGCAGACGAAGTCCCCACTCCCGGACGCCGCCGGCGACGACCCGCGCCGCGGCTTCTTCCGCTCGCCGCTATCCGCGGCAGCGCCGAGCGTGAGCGACAGCGAGAGGCTGATCACCTCGCCGTCCCTCGGATGCTTGGTCATGGTCAAGAAAGAAACCGAACGAACTGGAGATCGATCGAACACAAGATGATCGACGAGACGAGTTTTAGCTAGCTAGCTTCTGACTCGATCGAGAGAATGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15368#0 TCCTTTTTATTTTTTTTTTTTTTTTCTGTAACAGGTGGTATGGCCTTTAATTATGTGTAT 60 consensus_15368#3 ------------------------------------------------------------ consensus_15368#2 ----------------------------------------------------------GG 2 consensus_15368#5 ------------------------------------------------------------ consensus_15368#1 -------------------------------------------------CGAGTTTTTTT 11 consensus_15368#4 ------------------------------------------------------------ consensus_15368#0 GTACACAAAACAAACTACGCTTCCATCATGTGAGTAAAATCTCTGTTATCTAAATTATTC 120 consensus_15368#3 ------------------------------------------------------------ consensus_15368#2 GCTCGGGTTTGGCCTCGCCGCCGCCACGGCCAAGGAGACCCCCAAGAAGGTGCAGGAGAA 62 consensus_15368#5 ------------------------------------------------------------ consensus_15368#1 TTTTTTTTTTTAGCTATGAATGAAGAAATTATATTACATCTGTGTGTGTATATACATCTG 71 consensus_15368#4 ------------------------------------------------------------ consensus_15368#0 TGGCATGTACATGTGTGGTACATATATAAATCAATATTTGAAAACAGGGAACAATGGACG 180 consensus_15368#3 ------------------------------------------------------------ consensus_15368#2 GCCGGCGGCGGCGGCGACCCACGAGTGCCACATCTGCGGCCAAGGCTTCGAGATGGGCCA 122 consensus_15368#5 ------------------------------------------------------------ consensus_15368#1 AACTCAACAAATCTCCACCAAACGGTTCAAAAACTGACCGATTCAAAACCGAACAACCCA 131 consensus_15368#4 ------------------------------------------------------------ consensus_15368#0 TAAAACAC-AGCCGATTCGATCGAACAGTCTGACACAAATAAAATTCGATTGGAAAATTG 239 consensus_15368#3 ----------------------------------------------CGTTTCG---TTTT 11 consensus_15368#2 GGCGCTCG-GCGGCCACATGCCCCGCCCCCGCGAGGAGGCCGCCGCCGCCGCCGCGGCCG 181 consensus_15368#5 ------------------------------------------------------------ consensus_15368#1 AACGCTAATGAAAAAAAAAATTAAACCCCTATCATAGTTACAAGATCGATGAACCTGACT 191 consensus_15368#4 ------------------------------------------------------------ consensus_15368#0 ACTAATGAATGAATGAATGAATTAGTATATCCAGCGTAAAGCAATTCCTACAATGGTAAA 299 consensus_15368#3 TTTAATGAATGAATGAATGAATTAGTATATCCAGCGTAAAGCAATTCCTACAATGGTAAA 71 consensus_15368#2 CCGGCTTCTCCTGCACCTTCTTGGTGGTCTCCTTGGCCGTGGCGGCGGCGAGGCCGAGCG 241 consensus_15368#5 ----------------------------------------------------------AA 2 consensus_15368#1 TTTTTTTTCTAGACATGTACATGAACTAATTAATGGTGACACA--CACTGCGTCAGTTCA 249 consensus_15368#4 -----------------------------TTTGAACTGACGCAGTGTGTGTCACCATTAA 31 consensus_15368#0 ATCTCTATCTGAAAA-AAGAAAAATAATGAATGCAATAGCCACA-ATCGTGCACCAATAT 357 consensus_15368#3 ATCTCTATCTGAAAA-AAGAAAAATAATGAATGCAATAGCCACA-ATCGTGCACCAATAT 129 consensus_15368#2 CGAGCCCGTGGCGGC-CGCGCAGGTGGCTGGTCCGGTGGCCGCCCAGCGCCTGGAACGAC 300 consensus_15368#5 GGGAATAGCTGCGGC--GCGCAGGTGGCTGGTC-GGTGGCCGCC-AGCGCCTGGAACGAC 58 consensus_15368#1 AAACTTGGACGAAACTAATGGAGACCAGCGGTA-ACTAGGCGAACAACTCCAGCAACACC 308 consensus_15368#4 TTAGTTCATGTACATGTCTAGAAAAAAAAGTCAGGTTCATCGAT--CTTGTAACTATGAT 89 * * * * consensus_15368#0 GTACAGGCAGCAATCGCACGAATC--TAAACGAAGAGCTC------GAGCAGAACGGGCG 409 consensus_15368#3 GTACAGGCAGCAATCGCACGAATC--TAAACGAAGAGCTC------GAGCAGAACGGGCG 181 consensus_15368#2 GGGAACGC-GCGGCTGCACGTCTTG-CAGACGAAGTCCCCACTCCCGGACGCCGCCGGCG 358 consensus_15368#5 GGGAACGC-GCGGCTGCACGTCTTG-CAGACGAAGTCCCCACTCCCGGACGCCGCCGGCG 116 consensus_15368#1 GGTGGCTCGGCGGCGATCC--CCTC-CGGCCGCGCGTCGCAGCGCCAGACCCAGTCGTCG 365 consensus_15368#4 AGGGGTTTAATTTTTTTTTTCATTAGCGTTTGGGTTGTTCGGTTTTGAATCGGTCAGTTT 149 * * * consensus_15368#0 GCG-CGTGCACCGCCGCG-GCGGCGGCGGCGGCCTCCTCGCGGTGGCGGCGCATGTGGCC 467 consensus_15368#3 GCG-CGTGCACCGCCGCG-GCGGCGGCGGCGGCCTCCTCGCGGTGGCGGCGCATGTGGCC 239 consensus_15368#2 ACGACCCGCGCCGCGGCT-TCTTCCGCTCGCCGCTATCCGCGGCAGCGCCGAGCGTGAGC 417 consensus_15368#5 ACGACCCGCGCCGCGGCT-TCTTCCGCTCGCCGCTATCCGCGGCAGCGCCGAGCGTGAGC 175 consensus_15368#1 GCG-GAGGATCCACCGC---CGGCGGCGGCCATCTCCTCGCGGTGGCGCCGCATGTGTCC 421 consensus_15368#4 TTGAACCGTTTGGTGGAGATTTGTTGAGTTCAGATGTATATACACACACAG-ATGTAATA 208 * * * * * * * ** consensus_15368#0 GCCGAGCGCCTGGCCCATCTCGAAGCCTTGGCCGCAGATGTGGCACTCGTGGGTCGCCGC 527 consensus_15368#3 GCCGAGCGCCTGGCCCATCTCGAAGCCTTGGCCGCAGATGTGGCACTCGTGGGTCGCCGC 299 consensus_15368#2 GAC-AGCGAGAGGCTGATCACCTCGCCGTC-CCTCGGATGCT-TGGTCATGG-TCAAGAA 473 consensus_15368#5 GAC-AGCGAGAGGCTGATCACCTCGCCGTC-CCTCGGATGCT-TGGTCATGG-TCAAGAA 231 consensus_15368#1 GCCGAGCGCCTGGCCCATCTCGAAGCCGAGGCCGCAGATGTGGCACTCGTGC-TTGTCCC 480 consensus_15368#4 TAATTCTTTCATTCATAGCTATACCTCTTGTAAATATATGCAACATTTATGT-TTGTGCC 267 * * * * *** * ** * consensus_15368#0 CGCCGCCGGCTTCTCCTGCACCTTCTTGGTGGTCTCCTTGGCCGTGGC-GGCGGCGAGGC 586 consensus_15368#3 CGCCGCCGGCTTCTCCTGCACCTTCTTGGTGGTCTCCTTGGCCGTGGC-GGCGGCGAGGC 358 consensus_15368#2 AGAAACCGAACGAACTGGAG----ATCGATCGAACACAAGATGATCGA-CGAGACGAGTT 528 consensus_15368#5 AGAAACCGAACGAACTGGAG----ATCGATCGAACACAAGATGATCGA-CGAGACGAGTT 286 consensus_15368#1 TGTGCTCCTTGTCGGCCGCCCTGTGCAGCCTGATCGCCTTGTCGCCGATGGCGCCGAGGT 540 consensus_15368#4 AGAAATAAATTCAGCGCGCT--GTTCCTCCTGAAAAAAAAAAAAAAAAAAAAACCAAAAA 325 * * * * * consensus_15368#0 CGAGC--GCGAGCCCGTGGCGGCCGCGCAGGTGGCTGGTCCGGTGGCCGCCCAGCGCCTG 644 consensus_15368#3 CGAGC--GCGAGCCCGTGGCGGCCGCGCAGGTGGCTGGT--------------------- 395 consensus_15368#2 TTAGCTAGCTAGCTTCTGAC--TCGATCGAGAGA-------------------------- 560 consensus_15368#5 TTAGCTAGCTAGCTTCTGAC--TCGATCGAGAGAATGG---------------------- 322 consensus_15368#1 CGAGCCCGTTG--CTCCGGC---CGCGGAGGTGGCTGGTCCGGTGGCCCCCGAGCGCCTG 595 consensus_15368#4 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA---------------------- 363 * consensus_15368#0 GAACGACGGGAACGCGCGGCTGCACGTCTTGCAGACGAAGTCCCCACTCCCGGACGCCGC 704 consensus_15368#3 ------------------------------------------------------------ consensus_15368#2 ------------------------------------------------------------ consensus_15368#5 ------------------------------------------------------------ consensus_15368#1 GAAGGTCGGGAACGCGCGGCTGCAAGTCTTGCACACGAACTCCCCTTCCCCCGACGTCGC 655 consensus_15368#4 ------------------------------------------------------------ consensus_15368#0 CGGCGACGACCCGCGCCGCGGCTTCTTCCGCTCGCCGCTATCCGCGGCAGCGCCGAGCGT 764 consensus_15368#3 ------------------------------------------------------------ consensus_15368#2 ------------------------------------------------------------ consensus_15368#5 ------------------------------------------------------------ consensus_15368#1 CACCACGCTCCTCCGCCGCGCCCTCTTCCTCCTCGCCGCGCCGCCCGCCGCCGCCGCCGA 715 consensus_15368#4 ------------------------------------------------------------ consensus_15368#0 GAGCGACAGCGAGAGGCTGATCACCTCGCCGTCCCTCGGATGCTTGGTCATGGTCAAGAA 824 consensus_15368#3 ------------------------------------------------------------ consensus_15368#2 ------------------------------------------------------------ consensus_15368#5 ------------------------------------------------------------ consensus_15368#1 CGAGTCCGACGCCGTCGACGAGCAGTCCGTGCTCAGCGCCAGCGCCAGCGACACCTCCTC 775 consensus_15368#4 ------------------------------------------------------------ consensus_15368#0 AGAAACCGAACGAACTGGAGATCGATCGAACACAAGATGATCGACGAGACGAGTTTTAGC 884 consensus_15368#3 ------------------------------------------------------------ consensus_15368#2 ------------------------------------------------------------ consensus_15368#5 ------------------------------------------------------------ consensus_15368#1 CTCCTGCCTCGGGTGCTTCATCCCCGATTCGATAAGCTTGTGAATTAATGGATCGATGGA 835 consensus_15368#4 ------------------------------------------------------------ consensus_15368#0 TAGCTAGCTTCTGACTCGATCGAGAGAATGGTTAATATTGCTGT 928 consensus_15368#3 -------------------------------------------- consensus_15368#2 -------------------------------------------- consensus_15368#5 -------------------------------------------- consensus_15368#1 TTGAGAGAGAGATTTTTGGTTGGGGGGAGAT------------- 866 consensus_15368#4 -------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||