These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15453#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 789 fasta sequence [AATCACATACACAAGAAGAGCGTGGAAGAGAGGGAGGAGAGGGGAGAGAGCAATGCCGACGGGGAGGTTGAGCGGCAACATCACGCAGGACTGGGAGCCGGTGGTGCTGCGGCGGACGAAGCCG-AAGGCGGC-GGACCTTAAGTCGACGAGGG-CGGTGAACCAGGCGATGCGGACGGGGGCGCCGGTGGAGACGGTGCGGAAGGCGGCAGCGGGCACGAACAAGGCGGCGGC-GGGGGCGGCGGCGCCCGCGCGGAAGCTGGACGAGTCGACGGAGCCGGCGGGGC-TGGGGCGCGTGGGCGCGGAGGTGCGCGGCGCGA-TCCAGAAGGCCCGGGTGGCGAAGGGGTGGAGCCAGGCGGAGCTCGCCAAGCGCATCAACGAGCGGGCGCAGGTGGTGCAGGAGTACGAGAGCGGCAAGGCCGTCCCCGTCCAGGCCGTGCTCGCCAAGATGGAGCGCGCGCTCGAGGTCAAGCTCCGCGGCAAGGCGGTCGGCGCGCCGGCCGCGCCCGCCGGCGCCAAGTGAATCCTTCGTGGCCGGAATCGCACCTCCGATCCCTCCTAGTTAGGCGTTGATCCGTTTGTGAATGTGCAGTTTGTTTGTGTTCTTGGCTTAATTTTGGGGGGAAACTATGATATGCTAACTGGCTCAGACGCATGTGAAGTGATGATGGCTAGAAATTGAATTTCCGTTGGATTTGTGAACACATAGTTTAGTTGAAGCGCTTTTCGATCCGGTTGTGTTCAATCGTCGTTGTGCTCTGCTTCTAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK122052 [AATCACATACACAAGAAGAGCGTGGAAGAGAGGGAGGAGAGGGGAGAGAGCAATGCCGACGGGGAGGTTGAGCGGCAACATCACGCAGGACTGGGAGCCGGTGGTGCTGCGGCGGACGAAGCCG AAGGCGGC GGACCTTAAGTCGACGAGGG CGGTGAACCAGGCGATGCGGACGGGGGCGCCGGTGGAGACGGTGCGGAAGGCGGCAGCGGGCACGAACAAGGCGGCGGC GGGGGCGGCGGCGCCCGCGCGGAAGCTGGACGAGTCGACGGAGCCGGCGGGGC TGGGGCGCGTGGGCGCGGAGGTGCGCGGCGCGA TTCAGAAGGCCCGGGTGGCGAAGGGGTGGAGCCAGGCGGAGCTCGCCAAGCGCATCAACGAGCGGGCGCAGGTGGTGCAGGAGTACGAGAGCGGCAAGGCCGTCCCCGTCCAGGCCGTGCTCGCCAAGATGGAGCGCGCGCTCGAGGTCAAGCTCCGCGGCAAGGCGGTCGGCGCGCCGGCCGCGCCCGCCGGCGCCAAGTGAATCCTTCGTGGCCGGAATCGCACCTCCGATCCCTCCTAGTTAGGCGTTGATCCGTTTGTGAATGTGCAGTTTGTTTGTGTTCTTGGCTTAATTTTGGGGGGAAACTATGATATGCTAACTGGCTCAGACGCATGTGAAGTGATGATGGCTAGAA ] [+] EMBL AK119729 [ TACACAAGAAGAGCGTGGAAGAGAGGGAGGAGAGGGGAGAGAGCAATGCCGACGGGGAGGTTGAGCGGCAACATCACGCAGGACTGGGAGCCGGTGGTGCTGCGGCGGACGAAGCCG AAGGCGGC GGACCTTAAGTCGACGAGGG CGGTGAACCAGGCGATGCGGACGGGGGCGCCGGTGGAGACGGTGCGGAAGGCGGCAGCGGGCACGAACAAGGCGGCGGC GGGGGCGGCGGCGCCCGCGCGGAAGCTGGACGAGTCGACGGAGCCGGCGGGGC TGGGGCGCGTGGGCGCGGAGGTGCGCGGCGCGA TCCAGAAGGCCCGGGTGGCGAAGGGGTGGAGCCAGGCGGAGCTCGCCAAGCGCATCAACGAGCGGGCGCAGGTGGTGCAGGAGTACGAGAGCGGCAAGGCCGTCCCCGTCCAGGCCGTGCTCGCCAAGATGGAGCGCGCGCTCGAGGTCAAGCTCCGCGGCAAGGCGGTCGGCGCGCCGGCCGCGCCCGCCGGCGCCAAGTGAATCCTTCGTGGCCGGAATCGCACCTCCGATCCCTCCTAGTTAGGCGTTGATCCGTTTGTGAATGTGCAGTTTGTTTGTGTTCTTGGCTTAATTTTGGGGGGAAACTATGATATGCTAACTGGCTCAGACGCATGTGAAGTGATGATGGCTAGAAATTAAATTTCCGTTGG ] [+] EMBL OS0224A [ ctatatGAAGAGCGTNGAAGATAGGGAGGAGAGGGGAGATAGCAATGCCTACGGGGAGGTTGAGCGGCAACATCACGCAGGACTGGGAGCCGGTGGTGCTGCGGCGGACGAAGCCG AA CGTCTGGACCTTAAGTCGACGAGGG CGGTGAACCAGGCGATGCGGACGGGGGCGCCGGTGGAGACGGTGCGGAAGGCGGCAGCTGGCACGAACAAGGCGGCGGCGGGGGGCGGCGGCG CCGCGCGGAAGCTGGACGAGTCGACGGAGCCGGCGGGGC TTGGGCGCGTTGGC CGGAGGTTCGCTGCGCGA TCCAGAAGGCCCGGGTGGCGAAGGGTTGGAGCCAGGCGGACTTCGCCAAGCGCATCAACGATNGNGCNCANGTtg ] [+] EMBL OSC21621 [ GAAGAGCGTGGAAGAGAGGGAGGAGAGGGGAGAGAGCAATGCCGACGGGGAGGTTGAGCGGCAACATCACGCAGGACTNGGAGCCGGTGGTGCTGCGGCGGACGAAGCCG AAGGNNCN GGACCTTAAGTCGACGAGGG CGGTGAACCAGGCGATGCGGACGGGGGCGCCGGTGGAGACGGTGCGGAAGGCGGCAGCGGGCACGNACAAGGCGGCGGC GGGGGCGGCGGNG CCGCGCGGAAG TGGACGAGTCGACGGAGCCGGCGGGGCTTNGGGTGCNTTGGC CGGAGGTNCGCGGCGCGATTCCAGA ] [+] EMBL OSC08051 [ TGGAAGAGAGGGAGGAGAGGGGAGAGAGCAATGCCGACGGGGAGGTTGAGCGGCAACATCACGCAGGACTGGGAGCCGGTGGTGCTGCGGCGGACGAAGCCG AANG TNC GGACCTTAAGTCGACGAGGG CGGTGAACCAGGCGATGCGGACGGGGGCGCCGGTGGAGACGGTGCGGAAGGCGGCAGCGGGCACGAACAAGGCGGCGGC GGGGGCGGCGGCG CCGCGCGGAAGCTGGACGAGTCGACGGAGCCGGCGGGNC TNNGACGCGTNGGCGCGGAGGTGCGCGGCGC ] [+] EMBL AU197629 [ GGAGGAGAGGGGAGAGAGCAATGCCGACGGGGAGGTTGAGCGGCAACATCACGCAGGACTGGGAGCCGGTGGTGCTGCGGCGGACGAAGCCG AAGGCGGC GGACCTTAAGTCGACGAGGGCCGGTGAACCAGGCGATGCGGACGGGGGCGCCGGTGGAGACGGTGCGGAAGGCGGCAGCGGGCACGAACAAGGCGGCGGC GGGGGCGGCGGCGCCCGCGCGGAAGCTGGACGAGTCGACGGAGCCGGCGGGGC TGGGGCGCGTGGGCGCGGAGGTGCGCGGCGCGA TCCAGAAGGCCCGGGTGGCGAAGGGGTGGAGCCAGGCGGAGCTCGCCAAGCGCATCAACGAGCGGGCGCAGGTGGTGCAGGAGTACGAGAGCGGCAAGGCCGTCCCCGTCCAGGCCGTGCTCGCCAAGATGGAGCGCGCGCTCGAGGTC ] [+] EMBL AU165257 [ GAGGGGAGAGAGCAATGCCGACGGGGAGGTTGAGCGGCAACATCACGCAGGACTGGGAGCCGGTGGTGCTGCGGCGGACGAAGCCG AAGGCGGC GGACCTTAAGTCGACGAGGG CGGTGAACCAGGCGATGCGGACGGGGGCGCCGGTGGAGACGGTGCGGAAGGCGGCAGCGGGCACGAACAAGGCGGCGGC GGGGGCGGCGGCGCCCGCGCGGAAGCTGGACGAGTCGACGGAGCCGGCGGGGC TGGGGCGCGTGGGCGCGGAGGTGCGCGGCGCGA TCCAGAAGGCCCGGGTGGCGAAGGGGTGGAGCCAGGCGGAGCTCGCCAAGCGCATCAACGAGC GGCGCAGGTGGTGCAGGAGTACGAGAGCGGCAAGGCCGTCCCCGTCCAGGCCGTGCTCGCCAAGATGGAGCGCGCGCTCGAGGTCAAGCTCCGC ] [+] EMBL OSC28281 [ GAGAGAGCAATGCCGACGGGGAGGTTGAGCGGCAACATCACGCAGGACTGGGAGCCGGTGGTGCTGCGGCGGACGAAGCCG AANG GTC GGACCTTAAGTCGACGAGGG CGGTGAACCAGGCGATGCGGACGGGGGCGCCGGTGGAGACGGTGCGGAAGGCGGCAGCGGGCACGAACAAGGCGGCGGC GGGGGCGGCGGCG CCNCNCGGAAGCTGGACGAGTCGACGGAGCCGGCGGGGC T ] [+] EMBL OSC05331 [ GGAGGTTGAGCGGCAACATCACGCAGGACTGGGAGCCGGTGGTGCTGCGGCGGACGAAGCCG AA CGTCNGGACCTTAAGTCGACGAGGG CGGTGAACCAGGCGATGCGGACGGGGGCGCCGGTGGAGACGGTGCGGAAGGCGGCAGCGGGCACGAACAAGGCGGCGGC GGGGGCGGCGGCG CCGCGCGGAAGCTGGACGAGTCGACGGAGCCGTCGGGGC TGGGGCGCGTGGGC CGGAGGTGCGCGGCG GA TCCAGAAGGCCCGGGTGGCGAAGGGGTGGAGCCAGGCGGA NTCGNCAAGCGCATCAACGAGCGGTCGCAGGTGGTGCAGGAGTACGAGAGC ] [+] EMBL OSC05511 [ GGAGGTTGAGCGGCAACATCACGCAGGACTGGGAGCCGGTGGTGCTGCGGCGGACGAAGCCG AA CGNCTGGACCTTAAGTCGACGAGGG CGGTGAACCAGGCGATGCGGACGGGGGCGCCGGTGGAGACGGTGCGGAAGGCGGCAGCGGGCACGAACAAGGCGGCGGC GGGGGCGGCGGCG CCGCGCGGAAGCTGGACGAGTCGACGGAGCCGGCGGGGC TGGGGCGCGTNGGCGCGGAGGTGCGCGGCGCGA TCCAGAAGGCCCGGGTGGCGAAGGGGTGGAGCCAGGCGGANTTNGCCAAGCGCATCA ] [+] EMBL AU093167 [ AGCCGTTGGTGCTGCGGCGGACGAAGCCGAAAGGCGGC GGACCTTAAGTCGACGAGGG CGTTGAACCAGGCGATGCGGACGGGGGCGCCGGTGGAGACGGTGCGGAAGGCGGCAGCGGGNACGAACAAGGCGGCGGC GGGGGCGGCGGCGCCCGCGCGGAAGCTGGACGAGTCGACGGAGCCGGCGGGGC TGGGGCGCGTGGGCGCGGAGGTGCGCGGCGCGA TCCAGAAGGCCCGGGTGGCGAAGGGGTGGAGCCAGGCGGAGCTCGCCAAGCGCATCAACGAGCGGGCGCAGGTGGTGCAGGAGTACGAGAGCGGCAAGGCCGTCCCCGTCCAGGCCGTGCTCGCCAAGATGGAGCGCGCGCTCGAGGTCAAGCTCCGCGGCAAGGCGGTCGGCGCGCCGGCCGCGCCCGCCGGCGCCAAGTGAATCCTTCGTGGCCGGAATCGCACCTCCGATCCCTCCTAGTTAGGCGTTGATCCGTTTGTGAATGTGCAGTTTGTTTGTGTTCTTGGCTTAATTTTGGGGGGAAACTATGATATGCTAACTGGCTCAGACGCATGTGAAGTGATGATGGCTAGAAATTGAATTTCCGTTGGATTTGTGAACACATAGTTTAGTTGAAGCGCTTTTCGATCCGGTTGTGTTCAATCGTCGTTGTGCTCTGCTTCTAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU077570 [ CGCCGGTGGAGACGGTGCGGAAGGCGGCAGCGGGCACGAACAAGGCGGCGGC GGGGGCGGCGGCGCCCGCGCGGAAGCTGGACGAGTCGACGGAGCCGGCGGGGC TGGGGCGCGTGGGCGCGGAGGTGCGCGGCGCGA TCCAGAAGGCCCGGGTGGCGAAGGGGTGGAGCCAGGCGGAGCTCGCCAAGCGCATCAACGAGCGGGCGCAGGTGGTGCAGGAGTACGAGAGCGGCAAGGCCGTCCCCGTCCAGGCCGTGCTCGCCAAGATGGAGCGCGCGCTCGAGGTCAAGCTCCGCGGCAAGGCGGTCGGCGCGCCGGCCGCGCCCGCCGGCGCCAAGTGAATCCTTCGTGGCCGGAATCGCACCTCCGATCCCTCCTAGTTAGGCGTTGATCCGTTTGTGAATGTGCAGTTTGTTTGTGTTCTTGGCTTAATTTTGGGGGGAAACTATGATATGCTAACTGGCTCAGACGCATGTGAAGTGATGATGGCTAGAAATTGAATTTCCGTTGGATTTGTGAACAaaaaaaaa ] [+] EMBL C98004 [ CGCCAAGTGAATCCTTCGTGGCCGGAATCGNNCCTCCGATCCCTCCTAGTTAGGCGTTGATCCGTTTGTGAATGTGCAGTTTGTTTGTGTTCTTGGCTTAATTTTGGGGGGAAACTATGATATGCTAACTGGNTCAGACGCATGTGAAGTGATGATGGCTAGAAATTGAATTTCCGTTGGATTTGTGAACACATAGTTTAGTTGAAGCGCTTTTCGATCCGGTTGTGTTCAATCGTCGTTGTGCTCTGCTTCTAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_15453#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 677 fasta sequence [CAGTCCAACGCGGCTTCGCTTCCGGTGCCGTGTCCTCCCTAGAAATCATCGTCCCTA-AATTGGACAAAATTACACTGAACTACGCAGATCCATCGTTGCGACCACGCAGAAGATCTCCGTGCTCG--GG-TGGC--G-CGGCGGGATGGCGTCCTCATCGGCGGCGGCGGCGACGTACCGGTGCGCGGAGTGGGGGGCGGACCTGAACCTGACGGCGGCGCAGCTATACCCGGAGGGGGTCTACTTCGAGGCCGGCAACAAGGGGACGCTCTCCTTCTCGTGGGTGGACGAGTCGCGGCTGCGGTTCGCGCCGGAGGACAAGATCCGCCCCTTCTTCGAGACGCTCAACTACTGGGGGATCCAGCGGAAGCGCACCCGCATCAGCTGCGACGCCTGCGGCCGCCTCCTCGGCTACGTCTACGACGACGGGCCGCCGGCCATGGACGGCACCGGCCAGTTCGGGATGGGCCCCAGCCAGGTCATCCCTCGCCGGCCGAGGTACCGGGTCAAGACCAAGGCCGTCACCGTGGTCAATCCTCCGGCTACCGCACCGTACAGATGAGATGAAACCTTGTACATCAACATCGTAGTAGCGTTCGGTGTTACAAGTAGGACATGTAAAACGTATTCCATTGTGATCTTGGTTCGCCGTTGTTGCAAATAAATAAATTGTAGTAGTACTA] [+] EMBL AK107476 [CAGTCCAACGCGGCTTCGCTTCCGGTGCCGTGTCCTCCCTAGAAATCATCGTCCCTA AATTGGACAAAATTACACTGAACTACGCAGATCCATCGTTGCGACCACGCAGAAGATCTCCGTGCTCG GG TGGC G CGGCGGGATGGCGTCCTCATCGGCGGCGGCGGCGACGTACCGGTGCGCGGAGTGGGGGGCGGACCTGAACCTGACGGCGGCGCAGCTATACCCGGAGGGGGTCTACTTCGAGGCCGGCAACAAGGGGACGCTCTCCTTCTCGTGGGTGGACGAGTCGCGGCTGCGGTTCGCGCCGGAGGACAAGATCCGCCCCTTCTTCGAGACGCTCAACTACTGGGGGATCCAGCGGAAGCGCACCCGCATCAGCTGCGACGCCTGCGGCCGCCTCCTCGGCTACGTCTACGACGACGGGCCGCCGGCCATGGACGGCACCGGCCAGTTCGGGATGGGCCCCAGCCAGGTCATCCCTCGCCGGCCGAGGTACCGGGTCAAGACCAAGGCCGTCACCGTGGTCAATCCTCCGGCTACCGCACCGTACAGATGAGATGAAACCTTGTACATCAACATCGTAGTAGCGTTCGGTGTTACAAGTAGGACATGTAAAACGTATTCCATTGTGATCTTGGTTCGCCGTTGTTGCAAATAAATAAATTGTAGTAGTACTA] [+] EMBL BI795825 [ TCCGGTGCCGTGTCCTCCCTAGAAATCATCGTCCCTATAATTGGAC AAATTACACTGAACTACGCAGATCCATCGTTGCGGCCACGCAGAAGATCTCCGTGCTCGGTGGCCGGCCGGCCGGCGGGATGGCGTCCTCATCGGCGGCGGCGGCGACGTACCGGTGCGCGGAGT GCGGGCGGACCTGAACCTGACGGCGGCGCAGCTATACCCGGAGGGGGTCTACTTCGAGGCCGGCAACAAGGGGACGCTCTCCTTCTCGTGGGTGGACGAGTCGC GCTGCGGTTCGCGCCGGAGGACAAGATCCGCCCCTTCTTCGAGACGCTCAAC ] consensusID : consensus_15453#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 546 fasta sequence [CGGANCCCGNCGGGGCTGGGGCGCGTTGGGCGCGAAGGTGCGCGGCGCGATCCAGAAGGCCCGGGTGGCGAAGGGGTGGAGCCAGCGGAGCTCGCCAAGCGCATCAACGAGCGGGCGCAGGTGGTGCAGGAGTACGAGAGCGGCAAGGCCGTCCCCGTCCAGGCCGTGCTCGCCAAGATGGAGCGCGCGCTCGAGGTCAAGCTCCGCGGCAAGGCGGTCGGCGCGCCGGCCGCGCCCGCCGGCGCCAAGTGAATCCTTCGTGGCCGGAATCGCACCTCCGATCCCTCCTAGTTAGGCGTTGATCCGTTTGTGAATGTGCAGTTTGTTTGTGTTCTTGGCTTAATTTTGGGGGGAAACTATGATATGCTAACTGGCTCAGACGCATGTGAAGTGATGATGGCTAGAAATTGAATTTCCGTTGGATTTGTGAACACATAGTTTAGTTGAAGCGCTTTTCGATCCGGTTGTGTTCAATCGTCGTTGTGCTCTGCTTCTAGTTGTGACTAGCTTTGTTCTCTGCTCATATTTCANTGATTGATCCAAAAA] [+] EMBL AU165258 [CGGANCCCGNCGGGGCTGGGGCGCGTTGGGCGCGAAGGTGCGCGGCGCGATCCAGAAGGCCCGGGTGGCGAAGGGGTGGAGCCAGCGGAGCTCGCCAAGCGCATCAACGAGCGGGCGCAGGTGGTGCAGGAGTACGAGAGCGGCAAGGCCGTCCCCGTCCAGGCCGTGCTCGCCAAGATGGAGCGCGCGCTCGAGGTCAAGCTCCGCGGCAAGGCGGTCGGCGCGCCGGCCGCGCCCGCCGGCGCCAAGTGAATCCTTCGTGGCCGGAATCGCACCTCCGATCCCTCCTAGTTAGGCGTTGATCCGTTTGTGAATGTGCAGTTTGTTTGTGTTCTTGGCTTAATTTTGGGGGGAAACTATGATATGCTAACTGGCTCAGACGCATGTGAAGTGATGATGGCTAGAAATTGAATTTCCGTTGGATTTGTGAACACATAGTTTAGTTGAAGCGCTTTTCGATCCGGTTGTGTTCAATCGTCGTTGTGCTCTGCTTCTAGTTGTGACTAGCTTTGTTCTCTGCTCATATTTCANTGATTGATCCAAAAA] consensusID : consensus_15453#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 443 fasta sequence [AAATCATCGTCCCTAAATTGGACAAAATTACACTGAACTACGCAGATCCATCGTTGCGACCACGCAGAAGATCTCCGTGCTCGGGTGGCGCGGCGGGATGGCGTCCTCATCGGCGGCGGCGGCGACGTACCGGTGCGCGGAGTGCGAGAGCGGCAAGGCCGTCCCCGTCCAGGCCGTGCTCGCCAAGATGGAGCGCGCGCTCGAGGTCAAGCTCCGCGGCAAGGCGGTCGGCGCGCCGGCCGCGCCCGCCGGCGCCAAGTGAATCCTTCGTGGCCGGAATCGCACCTCCGATCCCTCCTAGTTAGGCGTTGATCCGTTTGTGAATGTGCAGTTTGTTTGTGTTCTTGGCTTAATTTTGGGGGGAAACTATGATATGCTAACTGGCTCAGACGCATGTGAAGTGATGATGGCTAGAAATTGAATTTCCGTTGGATTTGTGACAA] [+] EMBL AU069394 [AAATCATCGTCCCTAAATTGGACAAAATTACACTGAACTACGCAGATCCATCGTTGCGACCACGCAGAAGATCTCCGTGCTCGGGTGGCGCGGCGGGATGGCGTCCTCATCGGCGGCGGCGGCGACGTACCGGTGCGCGGAGTGCGAGAGCGGCAAGGCCGTCCCCGTCCAGGCCGTGCTCGCCAAGATGGAGCGCGCGCTCGAGGTCAAGCTCCGCGGCAAGGCGGTCGGCGCGCCGGCCGCGCCCGCCGGCGCCAAGTGAATCCTTCGTGGCCGGAATCGCACCTCCGATCCCTCCTAGTTAGGCGTTGATCCGTTTGTGAATGTGCAGTTTGTTTGTGTTCTTGGCTTAATTTTGGGGGGAAACTATGATATGCTAACTGGCTCAGACGCATGTGAAGTGATGATGGCTAGAAATTGAATTTCCGTTGGATTTGTGACAA] [+] EMBL AU069529 [AAATCATCGTCCCTAAATTGGACAAAATTACACTGAACTACGCAGATCCATCGTTGCGACCACGCAGAAGATCTCCGTGCTCGGGTGGCGCNGCGGGATGGCGTCCTCATCGGCGGCGGCGGCGACGTACCGGTGCGCGGAGTGCGAGANCGGCAAGGCCGTCCCCGTCCAGGCCGTGCTCGCCAAGATGGAGCGCGCGCTCGAGGTCAAGCTCCGCGGCAAGGCGGTCGGCGCGNCGGCCGNGCCCGGCGGCGCCAAGTGAATCCTTCGTGGNCGGAATCGCACCTCCGATCCCTCCTAGTTAGGCGTTGATCCGTTTGTGAATGTGCAGTTTGTNTGTGTTCTTGGCTTA ] consensusID : consensus_15453#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 348 fasta sequence [TGGAAGAGAAGGGAGGAGAGGGGAGAGAGCAATGCCGACGGGGAGGTTGAGCGGCAACATACGAGGCTGGGAGCCGGTGGTGCTGCGGCGGACGAAGCCGACGCGGACCTTAAGTCGACGAGGGCGGTGAACCAGGCGATGCGGACGGGGGCGCGGTGGAGACGTGCGAAGGCGCACGGGCACGACAAGCGCGCGGGGGCGCGCGCCGGCGGAANTGGACGAGTCGACGAGCCGCGGGCTGGGCGCTGGCCGGAGGTGCGCGGCGCGATCCAGAAGGCCGGTGGCGAAGGGGTGAGCAGGCCGACTCGCAAGCGCATCAACGAGCGGCCAGGTGGTCAGAGTACGAAG] [+] EMBL OS0359A [TGGAAGAGAAGGGAGGAGAGGGGAGAGAGCAATGCCGACGGGGAGGTTGAGCGGCAACATACGAGGCTGGGAGCCGGTGGTGCTGCGGCGGACGAAGCCGACGCGGACCTTAAGTCGACGAGGGCGGTGAACCAGGCGATGCGGACGGGGGCGCGGTGGAGACGTGCGAAGGCGCACGGGCACGACAAGCGCGCGGGGGCGCGCGCCGGCGGAANTGGACGAGTCGACGAGCCGCGGGCTGGGCGCTGGCCGGAGGTGCGCGGCGCGATCCAGAAGGCCGGTGGCGAAGGGGTGAGCAGGCCGACTCGCAAGCGCATCAACGAGCGGCCAGGTGGTCAGAGTACGAAG] consensusID : consensus_15453#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 315 fasta sequence [TGGAAGAGAGGGAGGAGAGGGGAGAGAGCAATGCCGACGGGGAGGTTGAGCGGCAACATCACGCAGGACTGGGAGCCGGTGGTGCTGCGGCGGACGAAGCCGAACGTACTGGNACCTTAAGTCGACGAGGGCGGTGAACCAGGCGATGCGGACGGGGGCGCCGGTGGAGACGGTGCGGAAGGCGGCACGGGCACGAACAAGGCGGCGGCGGNNGCGNCGNCGCCGNGCGGNAAGTNTGACGAGTCGACGNAGCCGGCGNGGCTTGTGGTCGCGTGGGCNNANAGGTGCGNGGCGCGATTCCAGAAGGNCCTTGTA] [+] EMBL OSC03152 [TGGAAGAGAGGGAGGAGAGGGGAGAGAGCAATGCCGACGGGGAGGTTGAGCGGCAACATCACGCAGGACTGGGAGCCGGTGGTGCTGCGGCGGACGAAGCCGAACGTACTGGNACCTTAAGTCGACGAGGGCGGTGAACCAGGCGATGCGGACGGGGGCGCCGGTGGAGACGGTGCGGAAGGCGGCACGGGCACGAACAAGGCGGCGGCGGNNGCGNCGNCGCCGNGCGGNAAGTNTGACGAGTCGACGNAGCCGGCGNGGCTTGTGGTCGCGTGGGCNNANAGGTGCGNGGCGCGATTCCAGAAGGNCCTTGTA] [+] EMBL AU069658 [ GAGGGGAGANAGCAATGCCGACGGGGAGGTTGAGCGGCAACATCACGCAGGACTGGGNGCCGGTGGTGCTGCGGCGGACGAAGCCGAANGTNC GG ACCTTAANTCGACGAGGGCGGTGAACCAGGCGATGCGGACGGGGGCGCCGGTGGAGACGGTNCGGAAGGCGGCACNGGCACGAACAANGCGG ] consensusID : consensus_15453#6 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 311 fasta sequence [AGCGTGGAAGAGAGGGAGGAGAGGGGAGAGAGCAATGCCGACGGGGAGGTTGAGCGGCAACATCACGCAGGACTGGGAGCCGGTGGTGCTGCGGCGGACGAAGCCGAACGTACGGTACCTTAAGTNGACGAGGGCGNTGNACCAGGCGATGCGGACGNGGGCGCCGGTGGAGACGTTGCGGAAGGCGTCACGNGCACGAACAAGTNCGACGGNGNTGGCGTACGGCGACCNCGCGGAANCTGAGACGAGTNGACGGAGNCNNCGAGNCTTTTGTACGCGTCNNCGNNNNGATTNCGCGANGCNNTCCANAA] [+] EMBL OSC19861 [AGCGTGGAAGAGAGGGAGGAGAGGGGAGAGAGCAATGCCGACGGGGAGGTTGAGCGGCAACATCACGCAGGACTGGGAGCCGGTGGTGCTGCGGCGGACGAAGCCGAACGTACGGTACCTTAAGTNGACGAGGGCGNTGNACCAGGCGATGCGGACGNGGGCGCCGGTGGAGACGTTGCGGAAGGCGTCACGNGCACGAACAAGTNCGACGGNGNTGGCGTACGGCGACCNCGCGGAANCTGAGACGAGTNGACGGAGNCNNCGAGNCTTTTGTACGCGTCNNCGNNNNGATTNCGCGANGCNNTCCANAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15453#5 -------------------------------------------------------TGGAA 5 consensus_15453#6 ---------------------------------------------------AGCGTGGAA 9 consensus_15453#4 -------------------------------------------------------TGGAA 5 consensus_15453#0 ---------------------------------AATCACATACACAAGAAGAGCGTGGAA 27 consensus_15453#2 -------------------------------------------------CGGANCCCGNC 11 consensus_15453#3 ------------------------------------------AAATCATCGTCCCTAAAT 18 consensus_15453#1 CAGTCCAACGCGGCTTCGCTTCCGGTGCCGTGTCCTCCCTAGAAATCATCGTCCCTAAAT 60 consensus_15453#5 GAGA-GGGAGGAGAGGGGAGAGAGCAATGCCGACGGGGAGGTT-----GAGCGGCAACAT 59 consensus_15453#6 GAGA-GGGAGGAGAGGGGAGAGAGCAATGCCGACGGGGAGGTT-----GAGCGGCAACAT 63 consensus_15453#4 GAGAAGGGAGGAGAGGGGAGAGAGCAATGCCGACGGGGAGGTT-----GAGCGGCAACAT 60 consensus_15453#0 GAGA-GGGAGGAGAGGGGAGAGAGCAATGCCGACGGGGAGGTT-----GAGCGGCAACAT 81 consensus_15453#2 GGGGCTGGGGCGCGTTGGGC-GCGAAGGTGCG-CGGCGCGATC---CAGAAGGCCCGGGT 66 consensus_15453#3 TGGACAAAATTACACTGAACTACGCAGATCCATCGTTGCGACCACGCAGAAGATCTCCGT 78 consensus_15453#1 TGGACAAAATTACACTGAACTACGCAGATCCATCGTTGCGACCACGCAGAAGATCTCCGT 120 * * * * * ** * * ** * * consensus_15453#5 CACGCAGGACTGGGAGCCGGTGGTGCTGCGGCGGACGAAGCCGA--ACGTACTGGNACCT 117 consensus_15453#6 CACGCAGGACTGGGAGCCGGTGGTGCTGCGGCGGACGAAGCCGA--ACGTAC-GGTACCT 120 consensus_15453#4 ---ACGAGGCTGGGAGCCGGTGGTGCTGCGGCGGACGAAGCCGA---CGC----GGACCT 110 consensus_15453#0 CACGCAGGACTGGGAGCCGGTGGTGCTGCGGCGGACGAAGCCGA--AGGCGG-CGGACCT 138 consensus_15453#2 GGCGAAGGGGTGGAGCCAGCGGAGCTCGCCAAGCGCATCAACGAGCGGGCGCAGGTGGTG 126 consensus_15453#3 GCTCGGGTGGCGCGGCGGGATGGCGTCCTCATCGGCGGCGGCGGCGACGTACCGGTG-CG 137 consensus_15453#1 GCTCGGGTGGCGCGGCGGGATGGCGTCCTCATCGGCGGCGGCGGCGACGTACCGGTGCGC 180 * * * * ** * * consensus_15453#5 TAAGTCGACGAGGGCGGTGAACCAGGCGATGC---GGACGGGGGCGCC--GG-------T 165 consensus_15453#6 TAAGTNGACGAGGGCGNTGNACCAGGCGATGC---GGACGNGGGCGCC--GG-------T 168 consensus_15453#4 TAAGTCGACGAGGGCGGTGAACCAGGCGATGC---GGACGGGGGCGC---GG-------T 157 consensus_15453#0 TAAGTCGACGAGGGCGGTGAACCAGGCGATGC---GGACGGGGGCGCC--GG-------T 186 consensus_15453#2 CAGGAGTACGAGAGCGGCAAGGCCGTCCCCGTCCAGGCCGTGCTCGCCAAGA-------T 179 consensus_15453#3 C-GGAGTGCGAGAGCGGCAAGGCCGTCCCCGTCCAGGCCGTGCTCGCCAAGA-------T 189 consensus_15453#1 GGAGTGGGGGGCGGACCTGAACCTGACGGCGGCGCAGCTATACCCGGAGGGGGTCTACTT 240 * * * * * * * * ** * * consensus_15453#5 GGAG-ACGGTGCGGAAG---------GCGGCA-CGGGCACGAA----CAAG-GCGGCGGC 209 consensus_15453#6 GGAG-ACGTTGCGGAAG---------GCGTCA-CGNGCACGAA----CAAGTNCGACGGN 213 consensus_15453#4 GGAG-ACG-TGCGAAGGCGCACGGGCACGACA-AGCGCGCGGG----GGCGCGCGCCGGC 210 consensus_15453#0 GGAG-ACGGTGCGGAAG---------GCGGCAGCGGGCACGAA----CAAG-GCGGCGGC 231 consensus_15453#2 GGAGCGCGCGCTCGAGGTCAAGCTCCGCGGCAAGGCGGTCGGCGCGCCGGCCGCGCCCGC 239 consensus_15453#3 GGAGCGCGCGCTCGAGGTCAAGCTCCGCGGCAAGGCGGTCGGCGCGCCGGCCGCGCCCGC 249 consensus_15453#1 CGAGGCCGGCAACAAGGGGACGCTCTCCTTCT-CGTGGGTGGACGAGTCGCGGCTGCGGT 299 *** ** * * * * * * * * * * consensus_15453#5 -GGNNGCGN-CGN---CG-CCGNGCGGNAAGTNTG---ACGAGTCGACGNAGC-CGGCGN 259 consensus_15453#6 -GNTGGCGTACGG---CGACCNCGCGGAANCTGAG---ACGAGTNGACGGAGN-CNNCGA 265 consensus_15453#4 -GGAANTGGACGAGT-CGACGAGCCGCGGGCTGGGC--GCTGGCCGGAGGTGCGCGGCGC 266 consensus_15453#0 -GGGGGCGG-CGG---CGCCCGCGCGGAAGCTGGA----CGAGTCGACGGAGC-CGGCGG 281 consensus_15453#2 CGGCGCCAAGTGAATCCTTCGTGGCCGGAATCGCACCTCCGATCCCTCCTAGTTAGGCGT 299 consensus_15453#3 CGGCGCCAAGTGAATCCTTCGTGGCCGGAATCGCACCTCCGATCCCTCCTAGTTAGGCGT 309 consensus_15453#1 TCGCGCCGGAGGACAAGATCCGCCCCTTCTTCGAGACGCTCAACTACTGGGGGATCCAGC 359 * * * * * consensus_15453#5 -GGCTTGTGGTCGCGTGGGCNNANA-GGT-GCGN----GGCGCGATTCCAGAAGGNCCTT 312 consensus_15453#6 -GNCTTTTGTACGCGTCNNCGNNNN-GATTNCGC----GANGCNNT-CCANAA------- 311 consensus_15453#4 -GATCCAGAAGGCCGGTGGCGAAGG-GGT-GAGC----AGGCCGACTCGCAAGCGCATCA 319 consensus_15453#0 -GGCT--GGGGCGCGTGGGCGCGGA-GGT-GCGC----GGCGCGAT-CCAGAAGGCCCGG 331 consensus_15453#2 TGATCCGTTTGTGAATGTGCAGTTT-GTTTGTGTTCTTGGCTTAATTTTGGGGGGAAACT 358 consensus_15453#3 TGATCCGTTTGTGAATGTGCAGTTT-GTTTGTGTTCTTGGCTTAATTTTGGGGGGAAACT 368 consensus_15453#1 GGAAGCGCACCCGCATCAGCTGCGACGCCTGCGGCCGCCTCCTCGGCTACGTCTACGACG 419 * * * * consensus_15453#5 GTA--------------------------------------------------------- 315 consensus_15453#6 ------------------------------------------------------------ consensus_15453#4 ACGAGCGGCCAGGTGGTCAGAGTACGAAG------------------------------- 348 consensus_15453#0 GTGGCGAAGGGGTGGAGCCAGGCGGAGCTCGCCAAGCGCATCAACGAGCGGGCGCAGGTG 391 consensus_15453#2 ATGATATGCTAACTGGCTCAGACGCATGTGAAGTGATGATGGCTAGAAATTGAATTTCCG 418 consensus_15453#3 ATGATATGCTAACTGGCTCAGACGCATGTGAAGTGATGATGGCTAGAAATTGAATTTCCG 428 consensus_15453#1 ACGGGCCGCCGGCCATGGACGGCACCGGCCAGTTCGGGATGGGCCCCAGCCAGGTCATCC 479 consensus_15453#5 ------------------------------------------------------------ consensus_15453#6 ------------------------------------------------------------ consensus_15453#4 ------------------------------------------------------------ consensus_15453#0 GTGCAGGAGTACGAGAGCGGCAAGGCCGTCCCCGTCCAGGCCGTGCTCGCCAAGATGGAG 451 consensus_15453#2 TTGGATTTGTGAACACATAGTTTAGTTGAAGCGCTTTTCGATCCGGTTGTGTTCAATCGT 478 consensus_15453#3 TTGGATTTGTGACAA--------------------------------------------- 443 consensus_15453#1 CTCGCCGGCCGAGGTACCGGGTCAAGACCAAGGCCGTCACCGTGGTCAATCCTCCGGCTA 539 consensus_15453#5 ------------------------------------------------------------ consensus_15453#6 ------------------------------------------------------------ consensus_15453#4 ------------------------------------------------------------ consensus_15453#0 CGCGCGCTCGAGGTCAAGCTCCGCGGCAAGGCGGTCGGCGCGCCGGCCGCGCCCGCCGGC 511 consensus_15453#2 CGTTGTGCTCTGCTTCTAGTTGTGACTAGCTTTGTTCTCTGCTCATATTTCANTGATTGA 538 consensus_15453#3 ------------------------------------------------------------ consensus_15453#1 CCGCACCGTACAGATGAGATGAAACCTTGTACATCAACATCGTAGTAGCGTTCGGTGTTA 599 consensus_15453#5 ------------------------------------------------------------ consensus_15453#6 ------------------------------------------------------------ consensus_15453#4 ------------------------------------------------------------ consensus_15453#0 GCCAAGTGAATCCTTCGTGGCCGGAATCGCACCTCCGATCCCTCCTAGTTAGGCGTTGAT 571 consensus_15453#2 TCCAAAAA---------------------------------------------------- 546 consensus_15453#3 ------------------------------------------------------------ consensus_15453#1 CAAGTAGGACATGTAAAACGTATTCCATTGTGATCTTGGTTCGCCGTTGTTGCAAATAAA 659 consensus_15453#5 ------------------------------------------------------------ consensus_15453#6 ------------------------------------------------------------ consensus_15453#4 ------------------------------------------------------------ consensus_15453#0 CCGTTTGTGAATGTGCAGTTTGTTTGTGTTCTTGGCTTAATTTTGGGGGGAAACTATGAT 631 consensus_15453#2 ------------------------------------------------------------ consensus_15453#3 ------------------------------------------------------------ consensus_15453#1 TAAATTGTAGTAGTACTA------------------------------------------ 677 consensus_15453#5 ------------------------------------------------------------ consensus_15453#6 ------------------------------------------------------------ consensus_15453#4 ------------------------------------------------------------ consensus_15453#0 ATGCTAACTGGCTCAGACGCATGTGAAGTGATGATGGCTAGAAATTGAATTTCCGTTGGA 691 consensus_15453#2 ------------------------------------------------------------ consensus_15453#3 ------------------------------------------------------------ consensus_15453#1 ------------------------------------------------------------ consensus_15453#5 ------------------------------------------------------------ consensus_15453#6 ------------------------------------------------------------ consensus_15453#4 ------------------------------------------------------------ consensus_15453#0 TTTGTGAACACATAGTTTAGTTGAAGCGCTTTTCGATCCGGTTGTGTTCAATCGTCGTTG 751 consensus_15453#2 ------------------------------------------------------------ consensus_15453#3 ------------------------------------------------------------ consensus_15453#1 ------------------------------------------------------------ consensus_15453#5 -------------------------------------- consensus_15453#6 -------------------------------------- consensus_15453#4 -------------------------------------- consensus_15453#0 TGCTCTGCTTCTAAAAAAAAAAAAAAAAAAAAAAAAAA 789 consensus_15453#2 -------------------------------------- consensus_15453#3 -------------------------------------- consensus_15453#1 -------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||