These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15467#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 19 consensus length = 1501 fasta sequence [CAACAAAAAAAAAACAACGTGGGGTGTGAGCTCTCTGAACCTCCTAGCTTGCCCGAG-ACAGAGAGAAAAAGAAAGCCTCATCTCCGGCCCCTCTTCCTCCTTGATTCCGGTGGCTCGCCGCCGGTGACGGGAGGGAGAGGGGTCAGGCTCAATTGCGTCTCCTTCGTATAGTAGTTTAGTCGGGTTAGTCTCGTAGTCAAGTTAGTCTCGTTCTATGTCCTTCCTGTTCTTTGTCTTTGGTCCTCTATGAAGAGTCCAGTATTCCCTTCTTCAGATCTGAAATATTGTGGGTGGATCAGCCAGGGAGGTCGGTC-TTTGCTGTGCCAGACCTCGATTTCGTCGGCCCTAGCGACGCCTG-A-TTGT-GGAAAATTCAGCTACAGTGCCGGTGGCCGAAAGTCTTCAAGC-TTTGAGGTCGCTGGCCATAGTTTGCGGTGGATCTGGATGGCTTCAACCGATTTCCGCGACCTCTTTGTCCATCTAATCCTTGGCGCTGTGCCCTTCCTCAGCGATGCACTCAGCCGCGTCGTGT-CCGGTGAGGG-TGGGCTCACACATGCCCAG-ATCGTCGTCATATTTGGTGGGCTTGGAGGTGCAGAGTTAGCTGAGCTGTTGGAGCAGTTCGTGCTTGCTGATTCCTCTCATGCGAGCATCCCGAACATTGTCTCGACAGACAACACCTCCATCAATTTGCTGCTGTGCCTAAATCAATTATGCCTAAATCAATTATCCAAGCAGCAGCACAAGTCATGGGCCAGCAAGGAGCACGCCATGAATCCCCTGCATCATACAGGCAACCAACAAGCTACACAACAAGGCAAAGCTGGT-CCAGCAATTCTGTGCATGCCGGCAACGAAGTCT-CCTTCTCAATCCTCA-CCCATGGGATACATCTTAAGTTCGT-AAGACTTTATCATCGCCACCATCTAGCTTCTCTAAAGCTTAAGGTCAGCTGGGTTTTGGATGCATCTTTTATTTCATT-CCTTTGCAGCAGTAT-CCATGTTGAGGTTATCGTTCGGGTTGAGCACCGACTATCTGTTAGACTTTGGTCGGCAGGGATATTGTTAGTGTTCCTCAGATTTAACGATGACTT-CCATGGCAATCATTGGTTGAGTCCGGTGAAGCCACC-AACATATCTACGACTCAACTCCAAAGCTCAATTAGTGCCAAATCCGTGGAGGCAGCCGGAGGGATCGCTGGCAGGTCAAATGGGAAGCACGTTTGAAGAGGCCCTTGGGTGCAATCGTCGCGGCAATGCCGCGGA-TCTCCGACGATTGTATTCACTACTACTGCTGTATCAGATGATCTGGAAGTTTGCTTCCATCATTCAATCATTACCTTTCAGGAAGATGGTCCTTAACGTTTGTTGTTATCAATTTCTTGCAAGGTGATGTTTCAGGGAATGTTGTTCCCTTCCAATGTACTATGTTTAATATGCAATAAAACTTTATGAGTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL C28261 [CAACAAAAAAAAAACAACGTGGGGTGTGAGCTCTCTGAACCTCCTAGCTTGCCCGAG ACAGAGAGAAAAAGAAAGCCTCATCTCCGGGCCCTCTTCCTCCTTGATTCCGGTGGCTCGCCGCCGGTGACGGGAGGGAGAGGGGTCAGGCTCAATTGCGTCTCCTTCGTATAGTAGTTTAGTCGGGTTAGTCTCGTAGTCAAGTTAGTCTCGTTCTATGTCCTTCCTGTTCTTTGTCTTTGGTCCTCTATGAAGAGTCCAGTATTCCCTTCTTCAGATCTGAAATATTGTGGGTGGATCAGCCAGGGAGGTCGGTC TTTGCTGTGCCAGACCTCGATTTCGTCGGCCCTAGCGACGCCTG A TTNTGGGAAAATTCAGCTACAGTNCCGGTGGCCGAAAGTCTTCAAGC TTTTAGGTCGC ] [+] EMBL AU062861 [ AACAACGTNGGGTGTGAGCTCTCTGAACCTCCTAGCTTGCCCGAG ACAGAGAGAAAAAGAAAGCCTCATCTCCGGCCCCTCTTCCTCCTTGATTCCGGTGGCTCGCCGCCGTNGACGGNAGGGAGAGGGGTCAGGCTCAATTGCGTCTCCTTCGTATAGTAGTTTAGTCGGGTTAGTCTCGTAGTCAAGTTAGTCTCGTTCTATGTCCTTCCTGTTCTTTGTCTTTGGTCCTCTATGAAGAGTCCAGTATTCCCTTCTTCAGATCTGAAATATTGTGGGTGGATCAGCCAGGGAGGTCGGTC ] [+] EMBL AK102606 [ GTGAGCTCTCTGAACCTCCTAGCTTGCCCGAG ACAGAGAGAAAAAGAAAGCCTCATCTCCGGCCCCTCTTCCTCCTTGATTCCGGTGGCTCGCCGCCGGTGACGGGAGGGAGAGGGGTCAGGCTCAATTGCGTCTCCTTCGTATAGTAGTTTAGTCGGGTTAGTCTCGTAGTCAAGTTAGTCTCGTTCTATGTCCTTCCTGTTCTTTGTCTTTGGTCCTCTATGAAGAGTCCAGTATTCCCTTCTTCAGATCTGAAATATTGTGGGTGGATCAGCCAGGGAGGTCGGTC TTTGCTGTGCCAGACCTCGATTTCGTTGGCCCTAGCGACGCCTG A TTGT GGAAAATTCAGCTACAGTGCCGGTGGCCGAAAGTCTTCAAGC TTTGAGGTCGCTGGCCATAGTTTGCGGTGGATCTGGATGGCTTCAACCGATTTCCGCGACCTCTTTGTCCATCTAATCCTTGGCGCTGTGCCCTTCCTCAGCGATGCACTCAGCCGCGTCGTGT CCGGTGAGGG TGGGCTCACACATGCCCAG ATCGTCGTCATATTTGGTGGGCTTGGAGGTGCAGAGTTAGCTGAGCTGTTGGAGCAGTTCGTGCTTGCTGATTCCTCTCATGCGAGCATCCCGAACATTGTCTCGACAGACAACACCTCCATCAATTTGCTGCTGTGCCTAAATCAATTATGCCTAAATCAATTATCCAAGCAGCAGCACAAGTCATGGGCCAGCAAGGAGCACGCCATGAATCCCCTGCATCATACAGGCAACCAACAAGCTACACAACAAGGCAAAGCTGGT CCAGCAATTCTGTGCATGCCGGCAACGAAGTCT CCTTCTCAATCCTCA CCCATGGGATACATCTTAAGTTCGT AAGACTTTATCATCGCCACCATCTAGCTTCTCTAAAGCTTAAGGTCAGCTGGGTTTTGGATGCATCTTTTATTTCATT CCTTTGCAGCAGTAT CCATGTTGAGGTTATCGTTCGGGTTGAGCACCGACTATCTGTTAGACTTTGGTCGGCAGGGATATTGTTAGTGTTCCTCAGATTTAACGATGACTT CCATGGCAATCATTGGTTGAGTCCGGTGAAGCCACC AACATATCTACGACTCAACTCCAAAGCTCAATTAGTGCCAAATCCGTGGAGGCAGCCGGAGGGGTCGCTGGCAGGTCAAATGGGAAGCACGTTTGAAGAGGCCCTTGGGTGCAATCGTCGCGGCAATGCCGCGGA TCTCCGACGATTGTATTCACTACTACTGCTGTATCAGATGATCTGGAAGTTTGCTTCCATCATTCAATCATTACCTTTCAGGAAGATGGTCCTTAACGTTTGTTGTTATCAATTTCTTGCAAGGTGATGTTTCAGGGAATGTTGTTCCCTTCCAATGTACTATGTTTAATATGCAATAAAACTT ] [+] EMBL C26244 [ GCTCTCTGAACCTCCTAGCTTGCCCGAN ACAGAGAGAAAAAGAAAGCCTCATCTCCGGNCCCTCTTCCTCCTTGATTCCGGTGGCTCGCCGCCGGTGACGGGAGGGAGAGGGGTCAGGCTCAATTGCNTCTCCTTCGTATAGTAGTTTAGTCGGGTTAGTCTCGTAGTCAAGTTAGTCTCGTTCTATGTCCTTCCTGTTCTTTGTNTTTGGTCCTCTATGAAGAGTCCAGTATTCCCTTCTTCAGATCTGAAATATTGTGGGTGGNTCAGCCAGGGAGGTCGGTCTTTTGCTGTNCCAGACCTCGATTTCGTCGGCCCTAGTGAC ] [+] EMBL C26692 [ GAACCTCCTAGCTTGCCCGAG ACAGAGAGAAAAAGAAAGCCTCATCTCCGGNCCCTCTTCCTCCTTGATTCCGGTGGCTCGCCGCCGGTGACGGGAGGGAGAGGGGTCAGGCTCAATTGCGTCTCCTTCGTATAGTAGTTTAGTCGGGTTAGTCTCGTAGTCAAGTTAGTCTCGTTCTATGTCCTTCCTGTTCTTTGTCTTTGGTCCTCTATGAAGAGTCCAGTATTCCCTTCTTCAGATCTGAAATATTGTGGGTGGATCAGCCAGGGAGGTCGGTC TTTGCTGTTCCAGACCTCGATTTCGTCGGCCCTAGCGACGCCTG A TTGT GGAAAATTCAGCTACAGTGCCGGTGGCCGAAAGTCTTCAAGC TTTNAGGTCGCTGGCCATAGTTTNCGGTGGATCTNGATGGCTTCAACCGATTTCCGNGACCTCTTTGTCCAT ] [+] EMBL AU172315 [ CCTCCTAGCTTGCCCGAGNACAGAGAGAAAAAGAAAGCCTCATCTCCGGCCCCTCTTCCTCCTTGATTCCGGTGGCTCGCCGCCGGTGACGGGAGGGAGAGGGGTCAGGCTCAATTGCGTCTCCTTCGTATAGTAGTTTAGTCGGGTTAGTCTCGTAGTCAAGTTAGTCTCGTTCTATGTCCTTCCTGTTCTTTGTCTTTGGTCCTCTATGAAGAGTCCAGTATTCCCTTCTTCAGATCTGAAATATTGTGGGTGGATCAGCCAGGGAGGTCGGTC TTTGCTGTGCCAGACCTCGATTTCGTCGGCCCTAGCGACGCCTG A TTGT GGAAAATTCAGCTACAGTGCCGGTGGCCGAAAGTCTTCAAGC TTTGAGGTCGCTGGCCATAGTTTGCGGTGGATCTGGATGGCTTCAACCGATTTCCGCGACCTCTTTGTCCATCTAATCCT ] [+] EMBL CF331906 [ gagtagaaaAGCTTGCCCGAG ACAGAGAGAAAAAGAAAGCCTCATCTCCGGCCCCTCTTCCTCCTTGATTCCGGTGGCTCGCCGCCGGTGACGGGAGGGAGAGGGGTCAGGCTCAATTGCGTCTCCTTCGTATAGTAGTTTAGTCGGGTTAGTCTCGTAGTCAAGTTAGTCTCGTTCTATGTCCTTCCTGTTCTTTGTCTTTGGTCCTCTATGAAGAGTCCAGTATTCCCTTCTTCAGATCTGAAATATTGTGGGTGGATCAGCCAGGGAGGTCGGTC TTTGCTGTGCCAGACCTCGATTTCGTCGGCCCTAGCGACGCCTG A TTGT GGAAAATTCAGCTACAGTGCCGGTGGCCGAAAGTCTTCAAGC TTTGAGGTCGCTGGCCATAGTTTGCGGTGGATCTTGATGGCTTCAACCGATTTCCGCGACCTCTTTGTCCATCTAATCCTTGGCGCTGTGCCCTTCCTCAGCGATGCACTCAGCCGCGTCGTGT CCGGTGAGGG TGGGCTCACACATGCCCAG ATCGTCGTCATATTTGGTGGGCTTGGAGGTGCAGAGTTAGCTGAGCTGTTGGAGCAGTTCGTGCTTGCTGATTCCTCT ] [+] EMBL C26270 [ GAGAAAAAGAAAGCCTCATCTCCGGNCCCTCTTCCTCCTTGATTCCGGTGGCTCGCCGCCGGTGACGGGAGGGAGAGGGGTCAGGCTCAATTGCGTCTCCTTCGTATAGTAGTTTAGTCGGGTTAGTCTCGTAGTCAAGTTAGTCTCGTTCTATGTCCTTCCTGTTCTTTGTCTTTGGTCCTCTATGAAGAGTCCAGTATTCCCTTCTTCAGATCTGAAATATTGTGGGTGGATCAGCCAGGGAGGTCGGTC TTTGCTGTGCCAGACCTCGATTTCGTCGGCCCTAGCGACGCCTG ATTTGT GGAAAATTCAGCTACAGTGCCGGTGGCCGAAAGTNTTCAAGCTTTTGAGGTCGCTGGCCATAGTTTNCGGTGGATCTGGATGGCTTCAACCGATTTCCGNGACCTCTTTGTCC ] [+] EMBL AK063981 [ AGTCGGGTTAGTCTCGTAGTCAAGTTAGTCTCGTTCTATGTCCTTCCTGTTCTTTGTCTTTGGTCCTCTATGAAGAGTCCAGTATTCCCTTCTTCAGATCTGAAATATTGTGGGTGGATCAGCCAGGGAGGTCGGTC TTTGCTGTGCCAGACCTCGATTTCGTCGGCCCTAGCGACGCCTG A TTGT GGAAAATTCAGCTACAGTGCCGGTGGCCGAAAGTCTTCAAGC TTTGAGGTCGCTGGCCATAGTTTGCGGTGGATCTGGATGGCTTCAACCGATTTCCGCGACCTCTTTGTCCATCTAATCCTTGGCGCTGTGCCCTTCCTCAGCGATGCACTCAGCCGCGTCGTGT CCGGTGAGGG TGGGCTCACACATGCCCAG ATCGTCGTCATATTTGGTGGGCTTGGAGGTGCAGAGTTAGCTGAGCTGTTGGAGCAGTTCGTGCTTGCTGATTCCTCTCATGCGAGCATCCCGAACATTGTCTCGACAGACAACACCTCCATCAATTTGCTGCTGTGCCTAAATCAATTATGCCTAAATCAATTATCCAAGCAGCAGCACAAGTCATGGGCCAGCAAGGAGCACGCCATGAATCCCCTGCATCATACAGGCAACCAACAAGCTACACAACAAGGCAAAGCTGGT CCAGCAATTCTGTGCATGCCGGCAACGAAGTCT CCTTCTCAATCCTCA CCCATGGGATACATCTTAAGTTCGT AAGACTTTATCATCGCCACCATCTAGCTTCTCTAAAGCTTAAGGTCAGCTGGGTTTTGGATGCATCTTTTATTTCATT CCTTTGCAGCAGTAT CCATGTTGAGGTTATCGTTCGGGTTGAGCACCGACTATCTGTTAGACTTTGGTCGGCAGGGATATTGTTAGTGTTCCTCAGATTTAACGATGACTT CCATGGCAATCATTGGTTGAGTCCGGTGAAGCCACC AACATATCTACGACTCAACTCCAAAGCTCAATTAGTGCCAAATCCGTGGAGGCAGCCGGAGGGATCGCTGGCAGGTCAAATGGGAAGCACGTTTGAAGAGGCCCTTGGGTGCAATCGTCGCGGCAATGCCGCGGA TCTCCGACGATTGTATTCACTACTACTGCTGTATCAGATGATCTGGAAGTTTGCTTCCATCATTCAATCATTACCTTTCAGGAAGATGGTCCTTAACGTTTGTTGTTATCAATTTCTTGCAAGGTGATGTTTCAGGGAATGTTGTTCCCTTCCAATGTACTATGTTTAATATGCAATAAAACTT ] [+] EMBL C28187 [ GTCTCGTTCTATGTCCTTCCTGTTCTTTGTCTTTGGTCCTCTATGAAGAGTCCAGTATTCCCTTCTTCAGATCTGAAATATTGTGGGTGGATCAGCCAGGGAGGTCGGTC TTTGCTGTGCCAGACCTCGATTTCGTCGGCCCTAGCGACGNCTG A TTGT GGAAAATTCAGCTACAGTGCCGGTGGNCGAAAGTCTTCAAGC TTTGAGGTCGCTGGNCATAGTTTNCGGTGGATCTGGATGGCTTCAACCGATTTCCGCGANCTCTTTGTCCATCTAATNCT ] [+] EMBL OSC102511 [ CCTCTATGAAGAGTCCAGTATTACCTTCTTNANATCTGAAATATTGTGGGTGGATCAGCCAGGGAGGTCGGTC TTTNCTGTGCCAGACCTCGATTTCGTCGGCCCTAGCGACGCCTGAA TTGT GGAAAATTCAGCTACAGTGCCGGTGGCCGAAAGTCTTCAAGC TTTGAGGTCGCTGNCCATAGTTTGCGGTGGATNTGGATGGCTTCAACCGATTTCCGCGACCTCTTTGTCCATCTAATCCTTGGCGCTGTGCCCTTCCTCAGCGATGCACTCAGNCGNGTCGTGTCCCGGTGAGGGTTGGGCTCACACATG NCAGAATCGTCGTCATATTT ] [+] EMBL CF324003 [ ctcgtgccgGGCTTCAACCGATTTCCGCGACCTCTTTGTCCATCTAATCCTTGGCGCTGTGCCCTTCCTCAGCGATGCACTCAGCCGCGTCGTGT CCGGTGAGGG TGGGCTCACACATGCCCAG ATCGTCGTCATATTTGGTGGGCTTGGAGGTGCAGAGTTAGCTGAGCTGTTGGAGCAGTTCGTGCTTGCTGATTCCTCTCATGCGAGCATCCCGAACATTGTCTCGACAGACAACACCTCCATCAATTTGCTGCTGTGCCTAAATCAATTATGCCTAAATCAATTATCCAAGCAGCAGCACAAGTCATGGGCCAGCAAGGAGCACGCCATGAATCCCCTGCATCATACAGGCAACCAACAAGCTACACAACAAGGCAAAGCTGGT CCAGCAATTCTGTGCATGCCGGCAACGAAGTCT CCTTCTCAATCCTCA CCCATGGGATACATCTTAAGTTCGT AAGACTTTATCATCGCCACCATCTAGCTTCTCT ] [+] EMBL AU092382 [ ACGCCATGAATCCCCTGCATCATACAGGCAACCAACAAGCTACACAACAAGGCAAAGCTGGTCCCAGCAATTCTGTGCATGCCGGCAACGAAGTCTCCCTTCTCAATCCTCA CCCATGGGATACATCTTAAGTTCGT AAGACTTTATCATCGCCACCATCTAGCTTCTCTAAAGCTTAAGGTCAGCTGGGTTTTGGATGCATCTTTTATTTCATT CCTTTGCAGCAGTAT CCATGTTGAGGTTATCGTTCGGGTTGAGCACCGACTATCTGTTAGACTTTGGTCGGCAGGGATATTGTTAGTGTTCCTCAGATTTAACGATGACTT CCATGGCAATCATTGGTTGAGTCCGGTGAAGCCACC AACATATCTACGACTCAACTCCAAAGCTCAATTNGTGCCAAATCCGTGGAGGCAGCCGGAGGGATCGCTGGCNGGTCAAATGGGAAGCACGTTTGAAGAGGCCCTTGGGTGCAATCGTC CGGCAATGCCGCGGA TCTCCGACGATTGTATTCACTACTACTGCTGTATCAGATGATCTGGAAGTTTGCTTCCATCATTCAATCATTA CTTTCAGGAAGATGGTCCTTAACGTTTGTTGTTATCAATTTCTTGCAAGGTGATGTTTCAGGGAATGTTGTTCCCTTCCAATGTACTATGTTTAATATGCAATAAAACTTTATGAGTTTCAAAAA ] [+] EMBL AU102095 [ TCATTCTTCACCCCATGGGATACATCTTAAGTNCGTAAAGACTTTATCATCGCCACCATCTAGCTTCTCTAAAGCTTAAGGTCAGCTGGGTTTTGGATGCATCTTTTATTTCATTCCCTTTGCAGCAGTATCCCATGTTGAGGTTATCGTTCGGGTTGAGCACCGACTATCTGTTAGACTTTGGTCGGCAGGGATATTGTTAGTGTTCCTCAGATTTAACGATGACTT CCATGGCAATCATTGGTTGAGTCCGGTGAAGCCACC AACATATCTACGACTCAACTCCAAAGCTCAATTAGTGCCAAATCCGTGGAGGCAGCCGGAGGGATCGCTGGCAGGTCAAATGGGAAGCACGTTTGAAGAGGCCCTTGGGTGCAATCGTC CGGCAATGCCGCGGA TCTCCGACGATTGTATTCACTACTACTGCTGTATCAGATGATCTGGAAGTTTGCTTCCATCATTCAATCATTA CTTTCAGGAAGATGGTCCTTAACGTTTGTTGTTATCAATTTCTTGCAAGGTGATGTTTCAGGGAATGTTGTTCCCTTCCAATGTACTATGTTTAATATGCAATAAAACTTTATGAGTTTCAAAAAA ] [+] EMBL OSC31672 [ TGAGCACCGACTATCTGTTAGACTTTGGTCGGCAGGGATATTGTTAGTGTTCCTCAGATTTAACGATGACTT CCATGGCAATCATTGGTTGAGTCCGGTGAAGCCACC AACATATCTACGACTCAACTCCAAAGCTCAATTAGTGCCAAATCCGTGGAGGCAGCCGGAGGGATCGCTGGCAGGTCAAATGGGAAGCACGTTTGAAGAGGCCCTTGGGTGCAATCGTCGCGGCAATGCCG GNANTCTCCGACGATTGTATTCACTACTACTGCTGTATCAGATGATCTGGAAGTTTGCTTCCATCATTCAATCATTA ] [+] EMBL AU172316 [ ATCTGTTAGACTTTGGTCGGCAGGGATATTGTTAGTGTTCCTCAGATTTAACGATGACTT CCATGGCAATCATTGGTTGAGTCCGGTGAAGCCACC AACATATNTACGACTCAACTCCAAAGCTCAATTAGTGCCAAATCCGTGGAGGCAGCCGGAGGGATCGCTGGCAGGTCAAATGGGAAGCACGTTTGAAGAGGCCCTTGGGTGCAATCGTCGCGGCAATGCCGCGGA TCTCCGACGATTGTATTCACTACTACTGCTGTATCAGATGATCTGGAAGTTTGCTTCCATCATTCAATCATTACCTTTCAGGAAGATGGTCCTTAACGTTTGTTGTTATCAATTTCTTGCAAGGTGATGTTTCAGGGAATGTTGTTCCCTTCCAATGTACTATGTTTAATATGCAATAAAACTTTATGAGTTTCAAAAA ] [+] EMBL C97517 [ TGTTAGACTTTGGTCGGCAGGGATATTGTTAGTGTTCCTCAGATTTAACGATGACTT CCATGGCAATCATTGGTTGAGTCCGGTGAAGCCACC AACATATCTACGACTCAACTCCAAAGCTCAATTAGTGCCAAATCCGTGGAGGCAGCCGGAGGGATCGCTGGCAGGTCAAATGGGAAGCNCGTTTGAAGAGGCCCTTGGGTGCAATCGTC CGGCAATGCCGCGGA TCTCCGACGATTGTATTCACTACTACTGCTGTATCAGATGATCTGGAAGTTTGCTTCCATCATTCAATCATTA CTTTCAGGAAGATGGTCCTTAACGTTTGTTGTTATCAATTTCTTGCAAGGTGATGTTTCAGGGAATGTTGTTCCCTTCCAATGTACTATGTTTAATATGCAATAAAACTTTATGNGTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CF331905 [ GGTCGGCAGGGATATTGTTAGTGTTCCTCAGATTTAACGATGACTTCCCAT GCAATCATTGGTTGAGTCCGGTGAAGCCACCAAACAT TTTACGACTCAACTCCAAAGCTCAATTAGTGCCAAATCCGTGGAGGCAGCCGGAGGGATCGCTGGCAGGTCAAATGGGAAGCACGTTTGAAGAGGCCCTTGGGTGCAATCGTCGCGGCAATGCCGCGGA TCTCCGACGATTGTATTCACTACTACTGCTGTATCAGATGATCTGGAAGTTTGCTTCCATCATTCAATCATTACCTTTCAGGAAGATGGTCCTTAACGTTTGTTGTTATCAATTTCTTGCAAGGTGATGTTTCAGGGAATGTTGTTCCCTTCCAATGTACTATGTTTAATATGCAATAAAACTTTATGAGTTTCAAAAAAAA ] [+] EMBL AU108238 [ CANCCGGAGGGATCGCTGGCAGGTCAAATGGGAAGCACGTTTGAAGAGGCCCTTGGGTGCAATCGTC CGGCAATGCCGCGGA TCTCCGACGATTGTATTCACTACTACTGCTGTATCAGATGATCTGGAAGTTTGCTTCCATCATTCAATCATTACCTTTCAGGAAGATGGTCCTTAACGTTTGTTGTTATCAATTTCTTGCAAGGTGATGTTTCAGGGAATGTTGTTCCCTTCCAATGTACTATGTTTAATATGCAATAAAACTTTATGAGTTTCAAAAAA ] consensusID : consensus_15467#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 777 fasta sequence [TTCGTCGGCCCTAGCGACGCCTGATTGTGGAAAATTAGCTACAGTGCCGGTGGCCGAAAGTCTTCAAGCTTTGACTCTTTGAGGTCGCTAGCCATAGTTTGCGGTGGATCTGGATGGCTTCAACTGATTTTCGCGGCCCCTTTGTCCATCTGATCCTTGGCGCTGTGCCCTTCCTCAGCGATGTGCTCAGCCGCGTCGTGTCCGGTGAGGGTGGGCTCACACACGCCCAGATCGTCGTCGTATTTGGTGGGTTTGGAGGTGCAGAGTTAGCTGAGTTGTTGAAGCAGTTCGTGCTTGCTGATTCCTCCCATGCGAGCATCAAGAACATTGTCTCGACCGACAGCATCTCCATCAATTTGCTGCTGTGCCTAAATCAATTATCCAAGCAGTGGCACAAGTCATGGGCCAGCAAGGAGCACGCCATGAATCCCCTGCATCATACAGGCAACCAACAAGCTACACAACAAGGCAAAGCTGGTCCCGGCAATTCTGTGCATGCTGGCAACGAGGTCTCCTTCTCAATCCTCACCCATGGGATACATCTTAAGTTCGTAAGACTTTATCATCGCCACCATCTAGCTTCTCTAAAGCTTAAGGTCAGCTGGGTTTTGGGTGCATCTTCCATTTCATTCCTTTGCAGCAGTATCCATGTCGAGATTATCGTTCGGGTTGAGCACCGACTATCTGTTAGACTTTGGTCGGCANGGGATGTTGNTAGTGTTCCTCAGATTTGACGATGACCNTCATGGCAATCATTGGTTGAGTCCGGTGAAGCCA] [+] EMBL CA766099 [TTCGTCGGCCCTAGCGACGCCTGATTGTGGAAAATTAGCTACAGTGCCGGTGGCCGAAAGTCTTCAAGCTTTGACTCTTTGAGGTCGCTAGCCATAGTTTGCGGTGGATCTGGATGGCTTCAACTGATTTTCGCGGCCCCTTTGTCCATCTGATCCTTGGCGCTGTGCCCTTCCTCAGCGATGTGCTCAGCCGCGTCGTGTCCGGTGAGGGTGGGCTCACACACGCCCAGATCGTCGTCGTATTTGGTGGGTTTGGAGGTGCAGAGTTAGCTGAGTTGTTGAAGCAGTTCGTGCTTGCTGATTCCTCCCATGCGAGCATCAAGAACATTGTCTCGACCGACAGCATCTCCATCAATTTGCTGCTGTGCCTAAATCAATTATCCAAGCAGTGGCACAAGTCATGGGCCAGCAAGGAGCACGCCATGAATCCCCTGCATCATACAGGCAACCAACAAGCTACACAACAAGGCAAAGCTGGTCCCGGCAATTCTGTGCATGCTGGCAACGAGGTCTCCTTCTCAATCCTCACCCATGGGATACATCTTAAGTTCGTAAGACTTTATCATCGCCACCATCTAGCTTCTCTAAAGCTTAAGGTCAGCTGGGTTTTGGGTGCATCTTCCATTTCATTCCTTTGCAGCAGTATCCATGTCGAGATTATCGTTCGGGTTGAGCACCGACTATCTGTTAGACTTTGGTCGGCANGGGATGTTGNTAGTGTTCCTCAGATTTGACGATGACCNTCATGGCAATCATTGGTTGAGTCCGGTGAAGCCA] consensusID : consensus_15467#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 360 fasta sequence [TGTGNACGTGTGGGNCNANACANAAAGAAAAAGAAAGCNTCATCTCCGGCCCCTCTTCCTCCTTGATTCCGGTGGCTCGCCGCCGGTNACGGGAGGNAGAGGGGTCAGGCTCAATTGCNTCTCCTTCGTATAGTAGTTTAGTCGGGTTAGTCTCGTAGTCAAGTTAGTCTCGTTCTATGTCCTTCCTGTTCTTTGTCTTTGGTCCTCTATNAAGAGTCCAGTATTCCCTTCTTCAGATCTGAAATATTGTGGGTGGATCANCCAGGGAGGTCGGTCTTTGCTGTNCCANACCTCGATTTCGTCGGCCCTAGCGACGGCTNATTNTGGAAAANTCAGCTACAGTNCCGGTGGCCGAAAGTC] [+] EMBL C25851 [TGTGNACGTGTGGGNCNANACANAAAGAAAAAGAAAGCNTCATCTCCGGCCCCTCTTCCTCCTTGATTCCGGTGGCTCGCCGCCGGTNACGGGAGGNAGAGGGGTCAGGCTCAATTGCNTCTCCTTCGTATAGTAGTTTAGTCGGGTTAGTCTCGTAGTCAAGTTAGTCTCGTTCTATGTCCTTCCTGTTCTTTGTCTTTGGTCCTCTATNAAGAGTCCAGTATTCCCTTCTTCAGATCTGAAATATTGTGGGTGGATCANCCAGGGAGGTCGGTCTTTGCTGTNCCANACCTCGATTTCGTCGGCCCTAGCGACGGCTNATTNTGGAAAANTCAGCTACAGTNCCGGTGGCCGAAAGTC] consensusID : consensus_15467#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 337 fasta sequence [AAAAAAAAAAAAAAAANAAAGCTCCAAAGCTCAATTAGTGCCAAATCCGTGGAGGCAGCCGGAGGGATCGCTGGCAGGTCAAATGGGAAGCACGTTTGAAGAGGCCCTTGGGTGCAATCGTCGCGGCAATGCCGCGGATCTCCGACGATTGTATTCACTACTACTGCTGTATCAGATGATCTGGAAGTTTGCTTCCATCATTCAATCATTACCTTTCAGGAAGATGGTCCTTAACGTTTGTTGTTATCAATTTCTTGCAAGGTGATGTTTCAGGGAATGTTGTTCCCTTCCAATGTACTATGTTTAATATGCAATAAAACTTTATGAGTTTCAAAAA] [+] EMBL AU222487 [AAAAAAAAAAAAAAAANAAAGCTCCAAAGCTCAATTAGTGCCAAATCCGTGGAGGCAGCCGGAGGGATCGCTGGCAGGTCAAATGGGAAGCACGTTTGAAGAGGCCCTTGGGTGCAATCGTCGCGGCAATGCCGCGGATCTCCGACGATTGTATTCACTACTACTGCTGTATCAGATGATCTGGAAGTTTGCTTCCATCATTCAATCATTACCTTTCAGGAAGATGGTCCTTAACGTTTGTTGTTATCAATTTCTTGCAAGGTGATGTTTCAGGGAATGTTGTTCCCTTCCAATGTACTATGTTTAATATGCAATAAAACTTTATGAGTTTCAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15467#0 CAACAAAAAAAAAACAACGTGGGGTGTGAGCTCTCTGAACCTCCTAGCTTGCCCGAGACA 60 consensus_15467#3 ------------------------------------------------------------ consensus_15467#2 ------------------------------------------------------------ consensus_15467#1 ------------------------------------------------------------ consensus_15467#0 GAGAGAAAAAGAAAGCCTCATCTCCGGCCCCTCTTCCTCCTTGATTCCGGTGGCTCGCCG 120 consensus_15467#3 ------------------------------------------------------------ consensus_15467#2 ------------------------------------------------------------ consensus_15467#1 ------------------------------------------------------------ consensus_15467#0 CCGGTGACGGGAGGGAGAGGGGTCAGGCTCAATTGCGTCTCCTTCGTATAGTAGTTTAGT 180 consensus_15467#3 ------------------------------------------------------------ consensus_15467#2 ------------------------------------------------------------ consensus_15467#1 ------------------------------------------------------------ consensus_15467#0 CGGGTTAGTCTCGTAGTCAAGTTAGTCTCGTTCTATGTCCTTCCTGTTCTTTGTCTTTGG 240 consensus_15467#3 ------------------------------------------------------------ consensus_15467#2 ------------------------------------------------------------ consensus_15467#1 ------------------------------------------------------------ consensus_15467#0 TCCTCTATGAAGAGTCCAGTATTCCCTTCTTCAGATCTGAAATATTGTGGGTGGATCAGC 300 consensus_15467#3 ------------------------------------------------------------ consensus_15467#2 ------------------------------------------------------------ consensus_15467#1 ------------------------------------------------------------ consensus_15467#0 CAGGGAGGTCGGTCTTTGCTGTGCCAGACCTCGATTTCGTCGGCCCTAGCGACGCCTGAT 360 consensus_15467#3 ------------------------------------------------------------ consensus_15467#2 ------------------------------------------------------------ consensus_15467#1 ------------------------------------------------------------ consensus_15467#0 TGTGGAAAATTCAGCTACAGTGCCGGTGGCCGAAAGTCTTCAAGCTTTGAGGTCGCTGGC 420 consensus_15467#3 ------------------------------------------------------------ consensus_15467#2 ------------------------------------------------------------ consensus_15467#1 ------------------------------------------------------------ consensus_15467#0 CATAGTTTGCGGTGGATCTGGATGGCTTCAACCGATTTCCGCGACCTCTTTGTCCATCTA 480 consensus_15467#3 ------------------------------------------------------------ consensus_15467#2 ------------------------------------------------------------ consensus_15467#1 ------------------------------------------------------------ consensus_15467#0 ATCCTTGGCGCTGTGCCCTTCCTCAGCGATGCACTCAGCCGCGTCGTGTCCGGTGAGGGT 540 consensus_15467#3 ------------------------------------------------------------ consensus_15467#2 ------------------------------------------------------------ consensus_15467#1 ------------------------------------------------------------ consensus_15467#0 GGGCTCACACATGCCCAGATCGTCGTCATATTTGGTGGGCTTGGAGGTGCAGAGTTAGCT 600 consensus_15467#3 ------------------------------------------------------------ consensus_15467#2 ------------------------------------------------------------ consensus_15467#1 ------------------------------------------------------------ consensus_15467#0 GAGCTGTTGGAGCAGTTCGTGCTTGCTGATTCCTCTCATGCGAGCATCCCGAACATTGTC 660 consensus_15467#3 ------------------------------------------------------------ consensus_15467#2 ------------------------------------------------------------ consensus_15467#1 ------------------------------------------------------------ consensus_15467#0 TCGACAGACAACACCTCCATCAATTTGCTGCTGTGCCTAAATCAATTATGCCTAAATCAA 720 consensus_15467#3 ------------------------------------------------------------ consensus_15467#2 ------------------------------------------------------------ consensus_15467#1 ----------------------TTCGTCGGCCCTAGCGACGCCTGATTGTGGAAAATTAG 38 consensus_15467#0 TTATCCAAGCAGCAGCACAAGTCATGGGCCAGCAAGGAGCACGCCATGAATCCCCTGCAT 780 consensus_15467#3 ------------------------------------------------------------ consensus_15467#2 ------------------------------------------------------------ consensus_15467#1 CTACAGTGCCGGTGGCCGAAAGTCTTCAAGCTTTGACTCTTTGAGGTCGCTAGCCATAGT 98 consensus_15467#0 CATACAGGCAACCAACAAGCTACACAACAAGGCAAAGCTGGTCCAGCAATTCTGTGCATG 840 consensus_15467#3 ------------------------------------------------------------ consensus_15467#2 ------------------------------------------------------------ consensus_15467#1 TTGCGGTGGATCTGGATGGCTTCAACTGATTTTCGCGGCCCCTTTGTCCATCTGATCCTT 158 consensus_15467#0 CCGGCAACGAAGTCTCCTTCTCAATCCTCACCCATGGGATACATCTTAAGTTCGTAAGAC 900 consensus_15467#3 ------------------------------------------------------------ consensus_15467#2 ------------------------------------------------------------ consensus_15467#1 GGCGCTGTGCCCTTCCTCAGCGATGTGCTCAGCCGCGTCGTGTCCGGTGAGGGTGGGCTC 218 consensus_15467#0 TTTATCATCGCCACCATCTAGCTTCTCTAAAGCTTAAGGTCAGCTGGGTTTTGGATGCAT 960 consensus_15467#3 ------------------------------------------------------------ consensus_15467#2 ------------------------------------------------------------ consensus_15467#1 ACACACGCCCAGATCGTCGTCGTATTTGGTGGGTTTGGAGGTGCAGAGTTAGCTGAGTTG 278 consensus_15467#0 CTTTTATTTCATTCCTTTGCAGCAGTATCCATGTTGAGGTTATCGTTCGGGTTGAGCACC 1020 consensus_15467#3 ------------------------------------------------------------ consensus_15467#2 ------------------------------------------------------------ consensus_15467#1 TTGAAGCAGTTCGTGCTTGCTGATTCCTCCCATGCGAGCATCAAGAACATTGTCTCGACC 338 consensus_15467#0 GACTATCTGTTAGACTTTGGTCGGCAGGGATATTGTTAGTGTTCCTCAGATTTAACGATG 1080 consensus_15467#3 ------------------------------------------------------------ consensus_15467#2 ------------------------------------------------------------ consensus_15467#1 GACAGCATCTCCATCAATTTGCTGCTGTGCCTAAATCAATTATCCAAGCAGTGGCACAAG 398 consensus_15467#0 ACTTCCATGGCAATCATTGGTTGAGTCCGGTGAAGCCACCAACATATCTACGACTCAACT 1140 consensus_15467#3 -------------------------------------AAAAAAAAAAAAAAAANAAAGCT 23 consensus_15467#2 ---------------------TGTGNACGTGTGGGNCNANACANAAAGAAAAAGAAAGCN 39 consensus_15467#1 TCATGGGCCAGCAAGGAGCACGCCATGAATCCCCTGCATCATACAGGCAACCAACAAGCT 458 * * * * * consensus_15467#0 CCA-----AAGCTCAATTAGTGCCAA-ATCC--GTGGA--------GGCAGCCGGAGGGA 1184 consensus_15467#3 CCA-----AAGCTCAATTAGTGCCAA-ATCC--GTGGA--------GGCAGCCGGAGGGA 67 consensus_15467#2 TCATCTCCGGCCCCTCTTCCTCCTTG-ATTCCGGTGGCTCGCCGCCGGTNACGGGAGGNA 98 consensus_15467#1 ACACAACAAGGCAAAGCTGGTCCCGGCAATTCTGTGCAT----GCTGGCAAC--GAGGTC 512 ** * * * * * *** ** * **** consensus_15467#0 TCGCTGGCAGGTCAAATGGGAAGCACGTTTGAAGAGGCCCTTGGGTGCAATCGTCGCGGC 1244 consensus_15467#3 TCGCTGGCAGGTCAAATGGGAAGCACGTTTGAAGAGGCCCTTGGGTGCAATCGTCGCGGC 127 consensus_15467#2 GAGGGGTCAGGCTCAATTGCNT-CTCCTTCGTATAGTAGTTTAGTCGGGTTAGTCTCG-T 156 consensus_15467#1 TCCTTCTCAATCCTCACCCATGGGATACATCTTAAGTTCGTAAGACTTTATCATCGCCAC 572 ** * ** * * * ** * consensus_15467#0 AATGCCGCGGATCTCCGACG-ATTGTATTCACTACTACTGCTGTATCAGATGATCTGGAA 1303 consensus_15467#3 AATGCCGCGGATCTCCGACG-ATTGTATTCACTACTACTGCTGTATCAGATGATCTGGAA 186 consensus_15467#2 AGTCAAGTTAGTCTCGTTCT-AT-GTCCTTCCTGTTCTT--TGTCTTTGGTCCTCTATNA 212 consensus_15467#1 CATCTAGCTTCTCTAAAGCTTAAGGTCAGCTGGGTTTTGGGTGCATCTTCCATTTCATTC 632 * * *** * * ** * ** * * consensus_15467#0 GTTTGCTTCCATCATTCAATCATTACCTTTCAGGAAGATGGTCCTTAA--CGTTTGTTGT 1361 consensus_15467#3 GTTTGCTTCCATCATTCAATCATTACCTTTCAGGAAGATGGTCCTTAA--CGTTTGTTGT 244 consensus_15467#2 A---GAGTCCAGTATTCCCTTCTT-CAGATCTGAAATATTGTGGGTGGATCANCCAGGGA 268 consensus_15467#1 CTTTGCAGC-AGTATCCATGTCGAGATTATCGTTCGGGTTGAGCACCGACTATCTGTTAG 691 * * * ** * ** * * consensus_15467#0 TATCAATTTCTTGCAAGGTGATGTTTCAGGGAATGTTGTTCCCTTCCAATGTACTATGTT 1421 consensus_15467#3 TATCAATTTCTTGCAAGGTGATGTTTCAGGGAATGTTGTTCCCTTCCAATGTACTATGTT 304 consensus_15467#2 GGTCGGTCT-TTGCTGTNCCANACCTC-GATTTCGTCGGCCCTAGCGACGGCTNATTNTG 326 consensus_15467#1 ACTTTGGTCGGCANGGGATGTTGNT--AGTGTTCCTCAGATTTGACGATGACCNTCATGG 749 * * * * * consensus_15467#0 TAATATGCAATAAAACTTTATGAGTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1481 consensus_15467#3 TAATATGCAATAAAACTTTATGAGTTTCAAAAA--------------------------- 337 consensus_15467#2 GAAAANTCAGCTACAGTNCCGGTGGCCGAAAGTC-------------------------- 360 consensus_15467#1 CAATCATTGGTTGAGTCCGGTGAAGCCA-------------------------------- 777 ** * consensus_15467#0 AAAAAAAAAAAAAAAAAAAA 1501 consensus_15467#3 -------------------- consensus_15467#2 -------------------- consensus_15467#1 -------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||