These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1548#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 804 fasta sequence [TCTTTTTTTTTAACTTTCCCCTATTATATGAAATCATATTGCCACCCAATTTTATTTATCTACACGAAGTGCCTCTCTCTCTCTCTCTCAACAAAACTACGGAAGTTTGACCTTACAACACACGGAGGATGGGGGCGGAGGTGAAGGTCATTCTTCCTCCGGACGGGGATGCCCATCTCCTCTGTCATATCCAGCTCGCTCGCTGCCATTCCATTAGGGAGTTCCCAGTCAAAGTGGTAGAGCAGCGCAGCAAGCAAAAGTTCCATGATTGCTTCTGCGAATGCCATACCAGGACATATTCTTCGTCCTGCGCCAAACGGTATGAACTCGAGGTCTATGCCCTTGAAGTCAACAGTACTGTGTTCAAACCGTTCTGGTCTAAACTCCTCAGCGTCATCCCAGTACTTTGGGTCTCTGCCGATAGCCCACGCGTTAACAAATACAGTGGTGCCTTTTGGAACATCATACCCCATGACTTTACATGATTCACGACACTCTCTTGCGACAAGCAGTGGTACCACAGGGTGAAGCCTTAGGGTCTCCTTAATAATGAGCTTTACATACTTTAAGCCAGACAAATCATCCTCTGTCACAGTTGGCTTTCTCCTAAGTTTGTCACGTAGCTCGGCTTGTGTCTTTTGCATAACCATTGGGTTCTTTATTAGCTCCGACATCGCCCATTGAAGCGTAGTCGCCGATGTCTCGCTACCTCCACTAAAGAGATCCTATAAAAAGTTAAAAGATCGAATGAAAAATACTACAAAGATTTGAGAGCTGTACCATCTAATTGAGCAAATATAATCC] [+] EMBL CB643044 [TCTTTTTTTTTAACTTTCCCCTATTATATGAAATCATATTGCCACCCAATTTTATTTATCTACACGAAGTGCCTCTCTCTCTCTCTCTCAACAAAACTACGGAAGTTTGACCTTACAACACACGGAGGATGGGGGCGGAGGTGAAGGTCATTCTTCCTCCGGACGGGGATGCCCATCTCCTCTGTCATATCCAGCTCGCTCGCTGCCATTCCATTAGGGAGTTCCCAGTCAAAGTGGTAGAGCAGCGCAGCAAGCAAAAGTTCCATGATTGCTTCTGCGAATGCCATACCAGGACATATTCTTCGTCCTGCGCCAAACGGTATGAACTCGAGGTCTATGCCCTTGAAGTCAACAGTACTGTGTTCAAACCGTTCTGGTCTAAACTCCTCAGCGTCATCCCAGTACTTTGGGTCTCTGCCGATAGCCCACGCGTTAACAAATACAGTGGTGCCTTTTGGAACATCATACCCCATGACTTTACATGATTCACGACACTCTCTTGCGACAAGCAGTGGTACCACAGGGTGAAGCCTTAGGGTCTCCTTAATAATGAGCTTTACATACTTTAAGCCAGACAAATCATCCTCTGTCACAGTTGGCTTTCTCCTAAGTTTGTCACGTAGCTCGGCTTGTGTCTTTTGCATAACCATTGGGTTCTTTATTAGCTCCGACATCGCCCATTGAAGCGTAGTCGCCGATGTCTCGCTACCTCCACTAAAGAGATCCTATAAAAAGTTAAAAGATCGAATGAAAAATACTACAAAGATTTGAGAGCTGTACCATCTAATTGAGCAAATATAATCC] consensusID : consensus_1548#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 729 fasta sequence [ACTTACGTTGTCGTCGTCGATCATCTGATCACCATGTACGACGCCGTCGCCTGCGTCGTCGCCGTCGTCGTCGTCGTCGTCTTCGCCATGCTTTGGGTGAAGCTGGCGAGGAGTGGTGATGGTGGTGGTGGTGGTAGTGGTGGCGTGACGTATCCAGCTCGCTCGCTGCCATTCCATTAGGGAGTTCCCAGTCAAAGTGGTAGAGCAGCGCAGCAAGCAGAAGTTCCATGATTGCTTCTGCGAATGCCATACCAGGACATATTCTTCGTCCTGCGCCAAACGGTATGAACTCGAGGTCTATGCCCTTGAAGTCAACAGTACTGTGTTCAAACCGTTCTGGTCTAAACTCCTCAGCGTCATCCCAGTACTTTGGGTCTCTGCCGATAGCCCACGCGTTAACAAATACAGTGGTGCCTTTTGGAACATCATACCCCATGACTTTACATGATTCACGACACTCTCTTGCGACAAGCAGTGGTACCACAGGGTGAAGCCTTAGGGTCTCCTTAATAATGAGCTTTACATACTTTAAGCCAGACAAATCATCCTCTGTCACAGTTGGCTTTCTCCTAAGTTTGTCACGTAGCTCGGCTTGTGTCTTTTGCATAACCATTGGGTTCTTTATTAGCTCCGACATCGCCCATTGAAGCGTAGTCGCCGATGTCTCGCTACCTCCACTAAAGAGATCCTATAAAAAGTTAAAAGATCGAATGAAAAATACTACCAAAG] [+] EMBL CB643043 [ACTTACGTTGTCGTCGTCGATCATCTGATCACCATGTACGACGCCGTCGCCTGCGTCGTCGCCGTCGTCGTCGTCGTCGTCTTCGCCATGCTTTGGGTGAAGCTGGCGAGGAGTGGTGATGGTGGTGGTGGTGGTAGTGGTGGCGTGACGTATCCAGCTCGCTCGCTGCCATTCCATTAGGGAGTTCCCAGTCAAAGTGGTAGAGCAGCGCAGCAAGCAGAAGTTCCATGATTGCTTCTGCGAATGCCATACCAGGACATATTCTTCGTCCTGCGCCAAACGGTATGAACTCGAGGTCTATGCCCTTGAAGTCAACAGTACTGTGTTCAAACCGTTCTGGTCTAAACTCCTCAGCGTCATCCCAGTACTTTGGGTCTCTGCCGATAGCCCACGCGTTAACAAATACAGTGGTGCCTTTTGGAACATCATACCCCATGACTTTACATGATTCACGACACTCTCTTGCGACAAGCAGTGGTACCACAGGGTGAAGCCTTAGGGTCTCCTTAATAATGAGCTTTACATACTTTAAGCCAGACAAATCATCCTCTGTCACAGTTGGCTTTCTCCTAAGTTTGTCACGTAGCTCGGCTTGTGTCTTTTGCATAACCATTGGGTTCTTTATTAGCTCCGACATCGCCCATTGAAGCGTAGTCGCCGATGTCTCGCTACCTCCACTAAAGAGATCCTATAAAAAGTTAAAAGATCGAATGAAAAATACTACCAAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1548#0 TCTTTTTTTTTAACTTTCCCCTATTATATGAAATCATATTGCCACCCAATTTTATTTATC 60 consensus_1548#1 -------------------------------ACTTACGTTGTCGTCGTCGATCATCTGAT 29 * * * *** * * * ** * consensus_1548#0 TACACGAAGTGCCTCTCTCTCTCTCTCTCAACAAAACTACGGAAGTTTGACCTTACAACA 120 consensus_1548#1 CACCATGTACGACGCCGTCGC-CTGCGTCGTCGCCGTCGTCGTCGTCGTCGTCTTCGCCA 88 ** * * * ** * ** ** * * ** * * ** consensus_1548#0 CACGGAGGATGGGGGCGGAGGTGAAGGTCATTCTTCCTCCGGACGGGGATGCCCATCTCC 180 consensus_1548#1 TGCTTTGGGTGAAGCTGGCGAGGAGTGGTGATGGTGGTGGTGGTGGTAGTGGTGGC---- 144 * ** ** * ** * ** * * * * * ** ** consensus_1548#0 TCTGTCATATCCAGCTCGCTCGCTGCCATTCCATTAGGGAGTTCCCAGTCAAAGTGGTAG 240 consensus_1548#1 -GTGACGTATCCAGCTCGCTCGCTGCCATTCCATTAGGGAGTTCCCAGTCAAAGTGGTAG 203 ** * ***************************************************** consensus_1548#0 AGCAGCGCAGCAAGCAAAAGTTCCATGATTGCTTCTGCGAATGCCATACCAGGACATATT 300 consensus_1548#1 AGCAGCGCAGCAAGCAGAAGTTCCATGATTGCTTCTGCGAATGCCATACCAGGACATATT 263 **************** ******************************************* consensus_1548#0 CTTCGTCCTGCGCCAAACGGTATGAACTCGAGGTCTATGCCCTTGAAGTCAACAGTACTG 360 consensus_1548#1 CTTCGTCCTGCGCCAAACGGTATGAACTCGAGGTCTATGCCCTTGAAGTCAACAGTACTG 323 ************************************************************ consensus_1548#0 TGTTCAAACCGTTCTGGTCTAAACTCCTCAGCGTCATCCCAGTACTTTGGGTCTCTGCCG 420 consensus_1548#1 TGTTCAAACCGTTCTGGTCTAAACTCCTCAGCGTCATCCCAGTACTTTGGGTCTCTGCCG 383 ************************************************************ consensus_1548#0 ATAGCCCACGCGTTAACAAATACAGTGGTGCCTTTTGGAACATCATACCCCATGACTTTA 480 consensus_1548#1 ATAGCCCACGCGTTAACAAATACAGTGGTGCCTTTTGGAACATCATACCCCATGACTTTA 443 ************************************************************ consensus_1548#0 CATGATTCACGACACTCTCTTGCGACAAGCAGTGGTACCACAGGGTGAAGCCTTAGGGTC 540 consensus_1548#1 CATGATTCACGACACTCTCTTGCGACAAGCAGTGGTACCACAGGGTGAAGCCTTAGGGTC 503 ************************************************************ consensus_1548#0 TCCTTAATAATGAGCTTTACATACTTTAAGCCAGACAAATCATCCTCTGTCACAGTTGGC 600 consensus_1548#1 TCCTTAATAATGAGCTTTACATACTTTAAGCCAGACAAATCATCCTCTGTCACAGTTGGC 563 ************************************************************ consensus_1548#0 TTTCTCCTAAGTTTGTCACGTAGCTCGGCTTGTGTCTTTTGCATAACCATTGGGTTCTTT 660 consensus_1548#1 TTTCTCCTAAGTTTGTCACGTAGCTCGGCTTGTGTCTTTTGCATAACCATTGGGTTCTTT 623 ************************************************************ consensus_1548#0 ATTAGCTCCGACATCGCCCATTGAAGCGTAGTCGCCGATGTCTCGCTACCTCCACTAAAG 720 consensus_1548#1 ATTAGCTCCGACATCGCCCATTGAAGCGTAGTCGCCGATGTCTCGCTACCTCCACTAAAG 683 ************************************************************ consensus_1548#0 AGATCCTATAAAAAGTTAAAAGATCGAATGAAAAATACTACAAAGATTTGAGAGCTGTAC 780 consensus_1548#1 AGATCCTATAAAAAGTTAAAAGATCGAATGAAAAATACTACCAAAG-------------- 729 ***************************************** ** consensus_1548#0 CATCTAATTGAGCAAATATAATCC 804 consensus_1548#1 ------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||