These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15516#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 874 fasta sequence [ATAACCCTCCTAAGGGAAT-AGCTTGGG-CG-CGCCTCTGCCTCTGCCTCTGGCTCCGGTTCTTTCGCCTCACCTGCCTCGGCCTCGGCGATCGCCGCCGCCGGCGCCGTCTCCGCCTCCGGCTCGGCCTCCTCGGCGGCTGCAGGCTCTGCCTCGGCCTCAGCCACAGTCTCCGCCGGAGCAGGAGCAGCCTGATCATCTGCCGGCTTTGTCTCTTCGACCGGCGCAGCCGCAGCCGCAGCGGCGGCGGCGGTGGCGCCTTCTTCCTCCTCAACGGCGGCGACGACCGGCTCCTGGACAGCCTCCACCACGGCCGGAGCCTCCTCCGCCGCCAGACTAGGGGCGGCGGCGACTGCTTGGACCTGCAACATTTGAGCAGGTATAAGCCAGGTATAAACATATTTCGAGAAGATAAAAGAGAAGATAGAAGATCAATGGACTATAAATTTATAGCCAGCTGTAGTACAAACTCCAAGATACATGTGTGTTGTGATATGTATGGCCAAATATGAATTGTGTAGTAGTATATGTTTATAGGTAACTATTGTATGAATTGGTTGCTAAATTGACTATGGCTGTGTTTAGATCCAAAATTTGGATACAAACTTCAATCCTTTTCCATCACATCAACATGTCATATACACACAACTTTTCAGTCACATCATCTCCAATTTCAACCAAAATCTAAACTTTACGCTGAACTAAACACAACCTATAAATGATTTGGAGTCAGTAGTTGGTTGTACTATTAAACTTGCTCTTAAGCAAAGCAA-CATGCATGCATTCATCTCATCATCAGCCAACCAAATGAGAGATCGATTCGATCGAATCGAATGCGAACTCGTCTCTTCCGGGAGGATGATTTGACTGATGGACC] [+] EMBL BI305613 [ATAACCCTCCTAAAGGAAT AGCTTGGGCCGCCGCCTCTGCCTCTGCCTCTGGCTCCGGTTCTTTCGCCTCACCTGCCTCGGCCTCGGCGATCGCCGCCGCCGGCGCCGTCTCCGCCTCCGGCTCGGCCTCCTCGGCGGCTGCAGGCTCTGCCTCGGCCTCAGCCACAGTCTCCGCCGGAGCAGGAGCAGCCTGATCATCTGCCGGCTTTGTCTCTTCGACCGGCGCAGCCGCAGCCGCAGCGGCGGCGGCGGTGGCGCCTTCTTCCTCCTCAACGGCGGCGACGACCGGCTCCTGGACAGCCTCCACCACGGCCGGAGCCTCCTCCGCCGCCAGACTAGGGGCGGCGGCGACTGCTTGGACCTGCAACATTTGAGCAGGTATAAGCCAGGTATAAACATATTTCGAGAAGATAAAAGAGAAGATAGAAGATCAATGGACTATAAATTTATAGCCAGCTGTAGTACAAACTCCAAGATACATGTGTGTTGTGATATGTATGGCCAAATATGAATTGTGTAGTAGTATATGTTTATAGGTAACTATTGTATGAATTGGTTGCTAAATTGACTATGGCTGTGTTTAGATCCAAAATTTGGATACAAACTTCAATCCTTTTCCATCACATCAACATGTCATATACACACAACTTTTCAGTCACATCATCTCCAATTTCAACCAAAATCTAAACTTTACGCTGAACTAAACACAACCTATAAATGATTTGGAGTCAGTAGTTGGTTGTACTATTAAACTTGCTCTT AGCAAAGCAACCATGCATGCATTCATCTCATCATCAGCCAACC ] [+] EMBL CB967452 [ AGGGAAT AGC TGGG CG CG CTCTG CTCTGCCTCTGGCTCCGG TCTTTCGCCTCACCTGCCTCGGCCTCGGCGATCGCCG CGCCGGCGCCGTCTCCGCCTCCGGCTCGGCCTCCTCGGCGGCTGCAGGCTCTGCCTCGGCCTCAGCCACAGTCTCCGCCGGAGCAGGAGCAGCCTGATCATCTGCCGGCTTTGTCTCTTCGACCGGCGCAGCCGCAGCCGCAGCGGCGGCGGCGGTGGCGCCTTCTTCCTCCTCAACGGCGGCGACGACCGGCTCCTGGACAGCCTCCACCACGGCCGGAGCCTCCTCCGCCGCCAGACTAGGGGCGGCGGCGACTGCTTGGACCTGCAACATTTGAGCAGGTATAAGCCAGGTATAAACATATTTCGAGAAGATAAAAGAGAAGATAGAAGATCAATGGACTATAAATTTATAGCCAGCTGTAGTACAAACTCCAAGATACATGTGTGTTGTGATATGTATGGCCAAATATGAATTGTGTAGTAGTATATGTTTATAGGTAACTATTGTATGAATTGGTTGCTAAATTGACTATGGCTGTGTTTAGATCCAAAATTTGGATACAAACTTCAATCCTTTTCCATCACATCAACATGTCATATACACACAACTTTTCAGTCACATCATCTCCAATTTCAACCAAAATCTAAACTTTACGCTGAACTAAACACAAGCTATAAATGATTTGGAGTCCGCAGTTGGTTGTACTATTAAACTTGCTCTTAAGCAAAGCAA CAAGCATGCATTCATCTCATCATCAGACAACAAAATGAGAGATCGATTCGATCGAATCGAATGCGAACTCGTCTCTTCCGGGAGGATGATTTGACTGATGGACC] [+] EMBL CB966710 [ GGGAATAAGCTTGGG CG CGCCTCT NCTCTGCCTCTGGCT CGGTTC TTCGCCTCACCTGCCTCGGCCTCGGCGATCGCCGCCGCCGGCGCCGTCTCCGCCTCCGGCTCGGCCTCCTCGGCGGCTGCAGGCTCTGCCTCGGCCTCAGCCACAGTCTCCGCCGGAGCAGGAGCAGCCTGATCATCTGCCGGCTTTGTCTCTTCGACCGGCGCAGCCGCAGCCGCAGCGGCGGCGGCGGTGGCGCCTTCTTCCTCCTCAACGGCGGCGACGACCGGCTCCTGGACAGCCTCCACCACGGCCGGAGCCTCCTCCGCCGCCAGACTAGGGGCGGCGGCGACTGCTTGGACCTGCAACATTTGAGCAGGTATAAGCCAGGTATAAACATATTTCGAGAAGATAAAAGAGAAGATAGAAGATCAATGGACTATAAATTTATAGCCAGCTGTAGTACAAACTCCAAGATACATGTGTGTTGTGATATGTATGGCCAAATATGAATTGTGTAGTAGTATATGTTTATAGGTAACTATTGTATGAATTGGTTGCTAAATTGACTATGGCTGTGTTTAGATCCAAAATTTGGATACAAACTTCAATCCTTTTCCATCACATCAACATGTCATATACACACAACTTTTCAGTCACATCATCTCCAATTTCAACCAAAATCTAAACTTTACGCTGAACTAAACACAACCTATAAATGATTTGGAGTCAGTAGTTGGTTGTACTATTAAACTTGCTCTTAAGCAAAGCAC CATGCATGC TTCATCTCATCATCAG CAACCAAATcggaagac ] [+] EMBL BI306320 [ CTCTGCCTCTGCCTCTGGCTCCGGTTCTTTCGCCTCACCTGCCTCGGCCTCGGCGATCGCCGCCGCCGGCGCCGTCTCCGCCTCCGGCTCGGCCTCCTCGGCGGCTGCAGGCTCTGCCTCGGCCTCAGCCACAGTCTCCGCCGGAGCAGGAGCAGCCTGATCATCTGCCGGCTTTGTCTCTTCGACCGGCGCAGCCGCAGCCGCAGCGGCGGCGGCGGTGGCGCCTTCTTCCTCCTCAACGGCGGCGACGACCGGCTCCTGGACAGCCTCCACCACGGCCGGAGCCTCCTCCGCCGCCAGACTAGGGGCGGCGGCGACTGCTTGGACCTGCAACATTTGAGCAGGTATAAGCCAGGTATAAACATATTTCGAGAAGATAAAAGAGAAGATAGAAGATCAATGGACTATAAATTTATAGCCAGCTGTAGTACAAACTCCAAGATACATGTGTGTTGTGATATGTATGGCCAAATATGAATTGTGTAGTAGTATATGTTTATAGGTAACTATTGTATGAATTGGTTGCTAAATTGACTATGGCTGTGTTTAGATCCAAAATTTGGATACAAACTTCAATCCTTTTCCATCACATCAACATGTCATATACACACAACTTTTCAGTCACATCATCTCCAATTTCAACCAAAATCTAAACTTTACGCTGAACTAAACACAACCTATAAATGATTTGGAGTCAGTAGTTGGTTGTACTATTAAACTTGCTCTTAAGC AAGCAC CATGCATGCATTCATCTCATCATCAGCCAACCA ] consensusID : consensus_15516#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 822 fasta sequence [TTTTTTTTTTTTTTTACGGAAAATTATTACTAGCATTTTTAACGATGAAACCACAACACAGACCGAGAACATACACGGGCACGAGCTCCAGGGCCAGTGATGACCTGCCACGTCAGCACCTACTGACACTGGGCCCGGTAGCCAACCTGACACATTTTTATTGGAGCCCAATTCATTACACAACACACACGTACGCCGCCGCCGCCGCCGCCGCCGCCGGCAGCCATCAGCTTCATCTCCGGCTCGCCATCTCTCGCCAGCTCACTCGGTGGCCTCGACGGCAGCCACCTCGGGTGCGGCCGGTGGCGCCGCCTCAGCCTCCTCCGCCACCTCGACGGGCGCCGCAGCAGCTTCTTCGACGGGAGCGGCCGCCGCCTCTGCCTCTGCCTCTGGCTCCGGTTCTTTCGCCTCACCTGCCTCGGCCTCGGCG-ATCGCCGCCGGCGGCGCCG-TCTCCGCCTCCGGCTCGGCCTCCTCGGCGGC-TGCAGGCTCTGCCTCTTTGGCCTCTGCCTCGGCCTC-AGCCAC-AGTCTCCGCCGGAGCAGCCGCAGCCTGATCATCTGCCGGCTTTGTCTCTTCGACCTGCGC-AGCCGC-AGCCGCAGCGGCGGCGG-CGGTGGCTTCTTCTTCCTCAACGGCGGCGACGACCGGCTCCTGGTCCTGGACAGCCTCCA-CCACGGCCGGAGCCTCCTCCGCCGCCAGACTAGGCGCGGCGGCGACTGCTT-GGACCTCGACGGTGGCCATTGGTGATGAACTGATGATGATGACAAGCGATGCGAGCAGTGGAAGCTAGTGCTCACTGCGTCACTGTGACTGATCGATGAGATCTCG] [-] EMBL AU166074 [TTTTTTTTTTTTTTTACGGAAAATTATTACTAGCATTTTTAACGATGAAACCACAACACAGACCGAGAACATACACGGGCACGAGCTCCAGGGCCAGTGATGACCTGCCACGTCAGCACCTACTGACACTGGGCCCGGTAGCCAACCTGACACATTTTTATTGGAGCCCAATTCATTACACAACACACACGTACGCCGCCGCCGCCGCCGCCGCCGCCGGCAGCCATCAGCTTCATCTCCGGCTCGCCATCTCTCGCCAGCTCACTCGGTGGCCTCGACGGCAGCCACCTCGGGTGCGGCCGGTGGCGCCGCCTCAGCCTCCTCCGCCACCTCGACGGGCGCCGCAGCAGCTTCT ] [-] EMBL AK103001 [ aagaTACGGAAAATTATTACTAGCATTTTTAACGATGAAACCACAACACAGACCGAGAACATACACGGGCACGAGCTCCAGGGCCAGTGATGACCTGCCACGTCAGCACCTACTGACACTGGGCCCGGTAGCCAACCTGACACATTTTTATTGGAGCCCAATTCATTACACAACACACACGTACGCCGCCGCCGCCGCCGCCGCCGCCGGCAGCCATCAGCTTCATCTCCGGCTCGCCATCTCTCGCCAGCTCACTCGGTGGCCTCGACGGCAGCCACCTCGGGTGCGGCCGGTGGCGCCGCCTCAGCCTCCTCCGCCACCTCGACGGGCGCCGCAGCAGCTTCTTCGACGGGAGCGGCCGCCGCCTCTGCCTCTGCCTCTGGCTCCGGTTCTTTCGCCTCACCTGCCTCGGCCTCGGCG ATCGCCGCCGGCGGCGCCG TCTCCGCCTCCGGCTCGGCCTCCTCGGCGGC TGCAGGCTCTGCCTCTTTGGCCTCTGCCTCGGCCTC AGCCAC AGTCTCCGCCGGAGCAGCCGCAGCCTGATCATCTGCCGGCTTTGTCTCTTCGACCTGCGC AGCCGC AGCCGCAGCGGCGGCGG CGGTGGCTTCTTCTTCCTCAACGGCGGCGACGACCGGCTCCTGGTCCTGGACAGCCTCCA CCACGGCCGGAGCCTCCTCCGCCGCCAGACTAGGCGCGGCGGCGACTGCTT GGACCTCGACGGTGGCCATTGGTGATGAACTGATGATGATGACAAGCGATGCGAGCAGTGGAAGCTAGTGCTCACTGCGTCACTGTGACTGATCGATGAGATCTCG] [+] EMBL BI305976 [ CCGCCGCCTCTGCCTCTGCCTCTGGCTCCGGTTCTTTCGCCTCACCTGCCTCGGCCTCGGCG ATGGCCGCCGCCGGCGCCG ACTACGCC ] [-] EMBL AU164086 [ TCTGCCTCTGCCTCTGGCTCCGGTTCTTTCGCCTCACCTGCCTCGGCCTCGGCG ATCGCCGCCGGCGGCGCCG TCTCCGCCTCCGGCTCGGCCTCCTCGGCGGC TGCAGGCTCTGCCTCTTTGGCCTCTGCCTCGGCCTC AGCCAC AGTCTCCGCCGGAGCAGCCGCAGCCTGATCATCTGCCGGCTTTGTCTCTTCGACCTGCGC A NCGC AGCCGCAGCGGCGGCGG CGGTGGCTTCTTCTTCCTCAACGGCGGCGACGACCGGCTCCTGGTCCTGGACAGCCTCCA CCACGGCCGGAGCCTCCTCCGCCGCCAGACTAGGCGC ] [-] EMBL AU163431 [ TCTGCCTCTGGCTCCGGTTCTTTCGCCTCACCTGCCTCGGCCTCGGCG ATCGCCGCCGG NGCACCGTTCTCCGCCTCCGGCTCGGCCTCCTCGGCGGC TGCAGGCTCTGCCTCTTTGGCCTCTGCCTCGGCCTC AGCCAC AGTCTCCGCCGGAGCAGCCGCAGCCTGATCATCTGCCGGCTTTGTCTCTTCGACCTGCGC A NCGC AGCCGCAGCGGCGGCGGACGGTGGCTTCTTCTTCCTCAACGGCGGCGACGACCGGCTCCTGGTCCTGGACAGCCTCCA CCACGGCCGGAGCCTCCTCCGCCGCCAGACTAGGCGCGGCGGCGACTGCTTGGGACCTCGACGGTGGCCATTGGTGATGAACTGATGATGATGACAAGCGATGCGAGCAGTGGAAGCTAGTGCTCACTGCGTCACTGTGA ] [-] EMBL AU164198 [ TCTGCCTCTGGCTCCGGTTCTTTCGCCTCACCTGCCTCGGCCTCGGCG ATCGCCGCCGGCGGCGCCG TCTCCGCCTCCGGCTCGGCCTCCTCGGCGGC TGCAGGCTCTGCCTCTTTGGCCTCTGCCTCGGCCTC AGCCAC AGTCTCCGCCGGAGCAGCCGCAGCCTGATCATCTGCCGGCTTTGTCTCTTCGACCTGCGC AGCCGC AGCCGCAGCGGCGGCGG CGGTGGCTTCTTCTTCCTCAACGGCGGCGACGACCGGCTCCTGGTCCTGGACAGCCTCCA CCACGGCCGGAGCCTCCTCCGCCG CAGACTAGGCGCGGCGGCGACTGCTT GGACCTCGACGGTGGCCATTGGTGATGAACTGATGATGATGACAAGCGATGCGAGCAGTGGAAGCTAGTGCTCACTGCGTCACTGTGAC ] [-] EMBL AU164183 [ TCTGCCTCTGGCTCCGGTTCTTTCGCCTCACCTGCCTCGGCCTCGGCG ATCGCCGCCGGCGGCGCCG TCTCCGCCTCCGGCTCGGCCTCCTCGGCGGC TGCAGGCTCTGCCTCTTTGGCCTCTGCCTCGGCCTC AGCCAC AGTCTCCGCCGGAGCAGCCGCAGCCTGATCATCTGCCGGCTTTGTCTCTTCGACCTGCGC AGCCGC AGCCGCAGCGGCGGCGG CGGTGGCTTCTTCTTCCTCAACGGCGGCGACGACCGGCTCCTGGTCCTGGACAGCCTCCA CCACGGCCGGAGCCTCCTCCGCCGCCAGACTAGGCGCGGCGGCGACTGCTT GGACCTCGACGGTGGCCATTGGTGATGAACTGATGATGATGACAAGCGATGCGAGCAGTGGAAGCTAGTGCT ] [-] EMBL AU164220 [ TCTGCCTCTGGCTCCGGTTCTTTCGCCTCACCTGCCTCGGCCTCGGCG ATCGCCGCCGGCGGCGCCG TCTCCGCCTCCGGCTCGGCCTCCTCGGCGGC TGCAGGCTCTGCCTCTTTGGCCTCTGCCTCGGCCTC AGCCAC AGTCTCCGCCGGAGCAGCCGCAGCCTGATCATCTGCCGGCTTTGTCTCTTCGACCTGCGC AGCCGC AGCCGCAGCGGCGGCGG CGGTGGCTTCTTCTTCCTCAACGGCGGCGACGACCGGCTCCTGGTCCTGGACAGCCTCCA CCACGGCCGGAGCCTCCTCCGCCGCCAGACTAGGCGCGGCGGCGACTGCTT GGACCTCGACGGTGGCCATTGGTGATGAACTGATGATGATGACAAGCGATGCGAGCAGTGGAAGCTAGTGCTCACTGCGTCACTGTGAC ] [-] EMBL AU184802 [ CTGCCTCTGGCTCCGGTTCTTTCGCCTCACCTGCCTCGGCCTCGGCG ATCGCCGCCGGCGGCGCCG TCTCCGCCTCCGGCTCGGCCTCCTCGGCGGC TGCAGGCTCTGCCTCTTTGGCCTCTGCCTCGGCCTC AGCCAC AGTCTCCGCCGGAGCAGCCGCAGCCTGATCATCTGCCGGCTTTGTCTCTTCGACCTGCGC AGCCGC AGCCGCAGCGGCGGCGG CGGTGGCTTCTTCTTCCTCAACGGCGGCGACGACCGGCTCCTGGTCCTGGACAGCCTCCA CCACGGCCGGAGCCTCCTCCGCCGCCAGACTAGGCGCGGCGGCGACTGCTT GGACCTCGACGGTGGCCATTGGTGATGAACTGATGATGATGACAAGCGATGCGAGCAGTGGAAGCTAGTGCTCACTGCGTCACTGTGA ] [-] EMBL AU063781 [ CCGGTTNTTTCGCCTTACCTGCCTNGGCCTC GCGAATCGCCGNC GCGGCGCCG TCTTNCCCTCCGGCTCGGCCTCCTCGGCGGCTTGCAGGCTCTGCCTTTTTGGCCTCTGCCTCGGCCTC AGCCAC AGTCTCCGCCGGAGCAGCCGCAGCCTGATCATCTGCCGGCTTTGTCTCTTCGACCTGCGC AGCCGC AG CGCAGCGGCGGCGG CGGTGGCTTCTTCTTCCTTAACGGCGGCGACGACCGGCTCCTGGTCCTGGACAGCCTCCA CCACGGCCGGAGCCTCCTCCGCCGCCAGACTAGGCGCGGCGGCGACTGCTT GGACCTCGACGGTGGCCATTGGTGATGAACTGATGATGATTACAANCGATGCGAGCAGTGGAAGCTAGTGCTCACTGCGTCACTGTGAC ] [-] EMBL AU064321 [ CTCTTTGGCCTCTGCCTCGGCCTN AGCCACAAGTCTCCGCCGGAGCAGCCGCAGCCTGATCATCTGCCGGCTTTGTCTCTTCGACCTGCGC AGCCGC AAGCGCAGCGGCGGCGG CGGTGGCTTCTTCTTCCTCAACGGCGGCGACGACCGGCTCCTGGTCCTGGACAGCCTCCA CCACGGCCGGAGCCTCCTCCGCCGCCAGACTAGGCGCGGCGGCGACTGCTT GGACCTCGACGGTGGCCATTGGTGATGAACTGATGATGATGACAAGCGATGCGAGCAGTGGAAGCTAGTGCTCACTGCGTCACTGTGAC ] [-] EMBL AU097588 [ CTCTGCCTCGNCCTCAAGCCAC AGTCTCCGNCGGAGCAGCCGCAGCCTGATCATCTGNCGGCTTTGTCTCTTCGACCTGCGCAAGCCGCNAG CGCAGCGGCGNCGN CGGTGGCTTCTTCTTCCTCAACGNCGNCGACGACCGGCTCCTGGTCCTGGANAGCCTCCA CCACGGCCGGAGCCTCCTCCGCCGCCAGACTAGGCGCGGCGGCGACTGCTT GGACCTCGACGGTGGCCATTGGTGATGAACTGATGATGATGACAAGCGATGCGAGCAGTGGAAGCTAGTGCTCA TGCGTCACTG ] [-] EMBL AU161805 [ TGCCGGCTTTGTCTCTTCGACCTGNGC AGCCGCNAG CGCAGCGGCGGCGG CGGTGGCTTCTTCTTCCTTAANGGCGGCGACGACCGGCTCCTGGTCCTGGACAGCCTCCACCCACGGCCGGAGCCTCCTCCGCCGCCAGACTAGGCGCGGCGGCGACTGCTT GGACCTCNACGGTGGCCATTGGTGATGAACTGATGATGATTACAANCGANGCGAGCAGTGGAAGCTAGTGCTCA TGCGTNACTGTGACTGAnacgnag ] consensusID : consensus_15516#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 814 fasta sequence [CTCTGCCTCTGGTCCGGTTCTTTCGCCTCACCTGCCTCGGNCTCGGCGATCGCCGCCGGCGGCGCCGTCTCCGCCTCCGGCTCGGCCTCCTCGGCGGCTGCAGGNTCTGCCTCTTTGGCCTCTGCCTCGGNCTCAGCCACAGTCTCCGCCGGAGCAGCCGCAGCCTGATCATCTGNCGGNTTTNTCTNTTNNACCTGNGCAGNGNAGCCGCAGCNGCGGNGGNNGTGGCTTCTTCTTCCTCAANNGCGGCGAAGACCGGNTCCTGGTNCTNGANAGNNTCCANCAAGGGNGNTAANCTCCATAAGAAGANAGACTAAGNGAGGNGGAGNAATGCTTTNNAACCTNGAATGGTTGCAATNGGTGATNAACTNGATAATGATNNANAATACAATTNGAGAAGTNGAAACTAAATGCTCAAATGAGNTNAATGTAGAATNATANATTNGTAATNATNNAGTNGANNTTNGAGGGGGTGAGTTACAAGTANNCAAATTTTAAAACTATAGTTGAAAGTNGTTATTAAAANAGTGANATNAATTTGAGAANNTTAAATTTNANAAACNNATAATTANATATTGNGAGAAAAACATAGGTNNNTTAAACAAAATTTTAAATTGNNTTTAANAATAAATATANAANANTTTTNAAAAAATTANAGTAAAATAANTANTAAAAGNNANTNAAAANAAAATNAAAAANTTNTAAAAAAGTTANTNNAANAGANAAATAGAAANAANTAGGAAAATTAAACTNANATNATANNNGAAATTAAANANTAAAAGNATAAAATTNGATNATNNGNTAANATATTGNT] [+] EMBL AU070607 [CTCTGCCTCTGGTCCGGTTCTTTCGCCTCACCTGCCTCGGNCTCGGCGATCGCCGCCGGCGGCGCCGTCTCCGCCTCCGGCTCGGCCTCCTCGGCGGCTGCAGGNTCTGCCTCTTTGGCCTCTGCCTCGGNCTCAGCCACAGTCTCCGCCGGAGCAGCCGCAGCCTGATCATCTGNCGGNTTTNTCTNTTNNACCTGNGCAGNGNAGCCGCAGCNGCGGNGGNNGTGGCTTCTTCTTCCTCAANNGCGGCGAAGACCGGNTCCTGGTNCTNGANAGNNTCCANCAAGGGNGNTAANCTCCATAAGAAGANAGACTAAGNGAGGNGGAGNAATGCTTTNNAACCTNGAATGGTTGCAATNGGTGATNAACTNGATAATGATNNANAATACAATTNGAGAAGTNGAAACTAAATGCTCAAATGAGNTNAATGTAGAATNATANATTNGTAATNATNNAGTNGANNTTNGAGGGGGTGAGTTACAAGTANNCAAATTTTAAAACTATAGTTGAAAGTNGTTATTAAAANAGTGANATNAATTTGAGAANNTTAAATTTNANAAACNNATAATTANATATTGNGAGAAAAACATAGGTNNNTTAAACAAAATTTTAAATTGNNTTTAANAATAAATATANAANANTTTTNAAAAAATTANAGTAAAATAANTANTAAAAGNNANTNAAAANAAAATNAAAAANTTNTAAAAAAGTTANTNNAANAGANAAATAGAAANAANTAGGAAAATTAAACTNANATNATANNNGAAATTAAANANTAAAAGNATAAAATTNGATNATNNGNTAANATATTGNT] consensusID : consensus_15516#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 398 fasta sequence [CTCTGCCTCTGGCTCCGGGTCTTTCACCTCACCTGCCTCGGCCTCGGCGATCGCCGCCGCCGGCGCCGTCTCCGCCTACGGCTCGGCACTCCTCGGCGGCTGCAGGCTCTGCCTCGGCCACAGCCACACTCTCCGCCAGACCAGGAGCAGCCTGATCATCTGCCGGCTTTGTCTCTTCGACCGGCGCAGCCGCAGCCGCAACGGCGGCGGCGGTGGCGCCTTCTTACTCCTCAACGGCGGCGACGACCGGCTCCTGGACAGCCTGCACCACGGACGGAGCCTGCTCCGCCGCCAGACTAGGGGCGGTGGCGACTGCTTGGACCTCGACGGTGGCCATTGGTGATGAACTGATGATGATGACTAGTGATGCGAGCAGTGAAAGCTAGTGCTCACTGCGT] [+] EMBL BI306108 [CTCTGCCTCTGGCTCCGGGTCTTTCACCTCACCTGCCTCGGCCTCGGCGATCGCCGCCGCCGGCGCCGTCTCCGCCTACGGCTCGGCACTCCTCGGCGGCTGCAGGCTCTGCCTCGGCCACAGCCACACTCTCCGCCAGACCAGGAGCAGCCTGATCATCTGCCGGCTTTGTCTCTTCGACCGGCGCAGCCGCAGCCGCAACGGCGGCGGCGGTGGCGCCTTCTTACTCCTCAACGGCGGCGACGACCGGCTCCTGGACAGCCTGCACCACGGACGGAGCCTGCTCCGCCGCCAGACTAGGGGCGGTGGCGACTGCTTGGACCTCGACGGTGGCCATTGGTGATGAACTGATGATGATGACTAGTGATGCGAGCAGTGAAAGCTAGTGCTCACTGCGT] [+] EMBL BI306350 [CTCTGCCTCTGGCTCCGGTTCTTTCGCCTCACCTGCCTCGGCCTCGGCGATCGCCGCCGCCGGCGCCGTCTCCGCCTCCGGCTCGGC CTCCTCGGCGGCTGCAGGCTCTGCCTCGGCCTCAGCCACAGTCTCCGCCGGAGCAGGAGCAGCCTGATCATCTGCCGGCTTTGTCTCTTCGACCGGCGCAGCCGCAGCCGCAGCGGCGGCGGCGGTGGCGCCTTCTTCCTCCTCAACGGCGGCGACGACCGGCTCCTGGACAGCCTCCACCACGGCCGGAGCCTCCTCCGCCGCCAGACTAGGGGCGGCGGCGACTGCTTGGACCTCGACGGTGGCCATTGGTGATGAACTGATGATGATGACTAGTGATGCGAGCAGTGAAAGCTAGTGCTCACTGCGT] consensusID : consensus_15516#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 288 fasta sequence [CNGCTGAAGATTTGCCTNTTTGGCCTCTGCCTCGGCCTTTAACCACAGTTTTCCGCCGGAGCAGCCGCAGCCTGATCATCTGCCGGCTTTGTCTCTTCGACCTGCGCAGCNGCAGCGCAGCGGCGGCGGCGGTGGCTTCTTCTTCCTCAACGGCGGCGACGACCGGCTCCTGGTCCTGGACAGCCTCCACCACGGCCGGAGCCTCCTCCGCCGCCAGACTAGGCGCGGCGGCGACTGCTTGGACCTGCAGCATTTGAGCAGGTATAAGCCANGCCCACGCGTTCNCNG] [-] EMBL C73647 [CNGCTGAAGATTTGCCTNTTTGGCCTCTGCCTCGGCCTTTAACCACAGTTTTCCGCCGGAGCAGCCGCAGCCTGATCATCTGCCGGCTTTGTCTCTTCGACCTGCGCAGCNGCAGCGCAGCGGCGGCGGCGGTGGCTTCTTCTTCCTCAACGGCGGCGACGACCGGCTCCTGGTCCTGGACAGCCTCCACCACGGCCGGAGCCTCCTCCGCCGCCAGACTAGGCGCGGCGGCGACTGCTTGGACCTGCAGCATTTGAGCAGGTATAAGCCANGCCCACGCGTTCNCNG] consensusID : consensus_15516#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 271 fasta sequence [CCGAGTGAGCTGGCGAGAGATGGCGANCCGGAGATGAAGCTGATGGCTGCCGGCGGCGGCGGCGGCGGCGGCGGCGTACGTGTGTGTTGTGTAATGAATTGGGCTCCAATAAAAATGTGTCAGGTTGGCTACCGGGCCCAGTGTCAGTAGGTGCTGACGTGGCAGGTCATNACTGGCCCTGGAGCTCGTGCCCGTGTATGTTCTCGGTCTGTGTTGTGGTTTCATCGTTNAAAATGCTAGTAATAATTTTCCGTATCTTTTTTTTTTGTTA] [+] EMBL AU102065 [CCGAGTGAGCTGGCGAGAGATGGCGANCCGGAGATGAAGCTGATGGCTGCCGGCGGCGGCGGCGGCGGCGGCGGCGTACGTGTGTGTTGTGTAATGAATTGGGCTCCAATAAAAATGTGTCAGGTTGGCTACCGGGCCCAGTGTCAGTAGGTGCTGACGTGGCAGGTCATNACTGGCCCTGGAGCTCGTGCCCGTGTATGTTCTCGGTCTGTGTTGTGGTTTCATCGTTNAAAATGCTAGTAATAATTTTCCGTATCTTTTTTTTTTGTTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15516#1 TTTTTTTTTTTTTTTACGGAAAATTATTACTAGCATTTTTAACGATGAAACCACAACACA 60 consensus_15516#3 ------------------------------------------------------------ consensus_15516#0 ------------------------------------------------------------ consensus_15516#4 ------------------------------------------------------------ consensus_15516#2 ------------------------------------------------------------ consensus_15516#5 ------------------------------------------------------------ consensus_15516#1 GACCGAGAACATACACGGGCACGAGCTCCAGGGCCAGTGATGACCTGCCACGTCAGCACC 120 consensus_15516#3 ------------------------------------------------------------ consensus_15516#0 ------------------------------------------------------------ consensus_15516#4 ------------------------------------------------------------ consensus_15516#2 ------------------------------------------------------------ consensus_15516#5 ------------------------------------------------------------ consensus_15516#1 TACTGACACTGGGCCCGGTAGCCAACCTGACACATTTTTATTGGAGCCCAATTCATTACA 180 consensus_15516#3 ------------------------------------------------------------ consensus_15516#0 ------------------------------------------------------------ consensus_15516#4 ------------------------------------------------------------ consensus_15516#2 ------------------------------------------------------------ consensus_15516#5 ------------------------------------------------------------ consensus_15516#1 CAACACACACGTACGCCGCCGCCGCCGCCGCCGCCGCCGGCAGCCATCAGCTTCATCTCC 240 consensus_15516#3 ------------------------------------------------------------ consensus_15516#0 ------------------------------------------------------------ consensus_15516#4 ------------------------------------------------------------ consensus_15516#2 ------------------------------------------------------------ consensus_15516#5 ------------------------------------------------------------ consensus_15516#1 GGCTCGCCATCTCTCGCCAGCTCACTCGGTGGCCTCGACGGCAGCCACCTCGGGTGCGGC 300 consensus_15516#3 ------------------------------------------------------------ consensus_15516#0 ------------------------------------------------------------ consensus_15516#4 ------------------------------------------------------------ consensus_15516#2 ------------------------------------------------------------ consensus_15516#5 ------------------------------------------------------------ consensus_15516#1 CGGTGGCGCCGCCTCAGCCTCCTCCGCCACCTCGACGGGCGCCGCAGCAGCTTCTTCGAC 360 consensus_15516#3 ------------------------------------------------------------ consensus_15516#0 -------------------------------------------ATAACCCTCCTAAGGGA 17 consensus_15516#4 ------------------------------------------------------------ consensus_15516#2 ------------------------------------------------------------ consensus_15516#5 ------------------------------------------------------------ consensus_15516#1 GGGAGCGGCCGCCGCCTCTGCCTCTGCCTCTGGCTCCGGTTCTTTCGCCTCACCTGCCTC 420 consensus_15516#3 ---------------------CTCTGCCTCTGGCTCCGGGTCTTTCACCTCACCTGCCTC 39 consensus_15516#0 ATAGCTTGGGCGCGCCTCTGCCTCTGCCTCTGGCTCCGGTTCTTTCGCCTCACCTGCCTC 77 consensus_15516#4 ------------------------------------------------------------ consensus_15516#2 ---------------------CTCTGCCTCTGG-TCCGGTTCTTTCGCCTCACCTGCCTC 38 consensus_15516#5 ------------------------------------------------------------ consensus_15516#1 GGCCTCGGCGATCGCCGCCGGCGGCGCCGTCTCCGCCTCCGGCTCGGC-CTCCTCGGCGG 479 consensus_15516#3 GGCCTCGGCGATCGCCGCCGCCGGCGCCGTCTCCGCCTACGGCTCGGCACTCCTCGGCGG 99 consensus_15516#0 GGCCTCGGCGATCGCCGCCGCCGGCGCCGTCTCCGCCTCCGGCTCGGC-CTCCTCGGCGG 136 consensus_15516#4 ---------------------------------CNGCTGAAGATTTGC-CTNTTTGGC-- 24 consensus_15516#2 GGNCTCGGCGATCGCCGCCGGCGGCGCCGTCTCCGCCTCCGGCTCGGC-CTCCTCGGCGG 97 consensus_15516#5 ------------------------------------------------------------ consensus_15516#1 CTGCAGGCTCTGCCTCTTTGGCCTCTGCCTCGGCCTC-AGCCACAGTCT-CCGCCGGAGC 537 consensus_15516#3 CTGCAGGCTCTGCCTC---------------GGCCAC-AGCCACACTCT-CCGCCAGACC 142 consensus_15516#0 CTGCAGGCTCTGCCTC---------------GGCCTC-AGCCACAGTCT-CCGCCGGAGC 179 consensus_15516#4 -------CTCTGCCTC---------------GGCCTTTAACCACAGTTTTCCGCCGGAGC 62 consensus_15516#2 CTGCAGGNTCTGCCTCTTTGGCCTCTGCCTCGGNCTC-AGCCACAGTCT-CCGCCGGAGC 155 consensus_15516#5 -----------------------------------------------------CCGAGTG 7 ** consensus_15516#1 AGCCGCAGCCTGATCATCTGCCGGCTTTGTCTCTTCGACCTGCGCAGCCGCAGCCGCAGC 597 consensus_15516#3 AGGAGCAGCCTGATCATCTGCCGGCTTTGTCTCTTCGACCGGCGCAGCCGCAGCCGCAAC 202 consensus_15516#0 AGGAGCAGCCTGATCATCTGCCGGCTTTGTCTCTTCGACCGGCGCAGCCGCAGCCGCAGC 239 consensus_15516#4 AGCCGCAGCCTGATCATCTGCCGGCTTTGTCTCTTCGACCTGCGCAGCNGCAGC-GCAGC 121 consensus_15516#2 AGCCGCAGCCTGATCATCTGNCGGNTTTNTCTNTTNNACCTGNGCAGN-GNAGCCGCAGC 214 consensus_15516#5 AGCTGGCGAGAGATGGCGANCCGGAGATGAAGCTGATGGCTGC-CGGCGGCGGCGGCGGC 66 ** * * *** *** * * * * * * * ** ** * consensus_15516#1 GGCGGCGGCGGTGGCTTCTTCTT---CCTCAACGGCGGCGACGACCGGCTCCTGGTCCTG 654 consensus_15516#3 GGCGGCGGCGGTGGCGCCTTCTTACTCCTCAACGGCGGCGACGACCGGCTCCTG------ 256 consensus_15516#0 GGCGGCGGCGGTGGCGCCTTCTTCCTCCTCAACGGCGGCGACGACCGGCTCCTGG----- 294 consensus_15516#4 GGCGGCGGCGGTGGC---TTCTTCTTCCTCAACGGCGGCGACGACCGGCTCCTGGTCCTG 178 consensus_15516#2 NGCGGNGGNNGTGGCTTCTTCTT---CCTCAANNGCGGCGAAGACCGGNTCCTGGTNCTN 271 consensus_15516#5 GGCGGCGGCGTACGTGTGTGTTGTGTAATGAATTG-GGCTCCAATAAAAATGTG------ 119 **** ** * * * * ** * *** * ** consensus_15516#1 GACAGCCTCCACCACGGCCGG--AGCCTCCTCCGCCGCCAGACTAGGCGCGGCGGCGAC- 711 consensus_15516#3 GACAGCCTGCACCACGGACGG--AGCCTGCTCCGCCGCCAGACTAGGGGCGGTGGCGAC- 313 consensus_15516#0 -ACAGCCTCCACCACGGCCGG--AGCCTCCTCCGCCGCCAGACTAGGGGCGGCGGCGAC- 350 consensus_15516#4 GACAGCCTCCACCACGGCCGG--AGCCTCCTCCGCCGCCAGACTAGGCGCGGCGGCGAC- 235 consensus_15516#2 GANAGNNTCCANCAAGGGNGNTAANCTCCATAAGAAGANAGACTAAGNGAGGNGGAGNAA 331 consensus_15516#5 -TCAGGTTGGCTACCGGGCCC--AGTGTCAGTAGGTGCT-GACGTGGCA-GGTCATNAC- 173 ** * ** * * * *** * ** consensus_15516#1 TGCTT--GGACCTCGAC-GGTGGCCATTGGTGATGAACTGATGATGATGACAAGCGATGC 768 consensus_15516#3 TGCTT--GGACCTCGAC-GGTGGCCATTGGTGATGAACTGATGATGATGACTAGTGATGC 370 consensus_15516#0 TGCTT--GGACCTGCAA-CATTTGAGCAGGT-ATAAGCCAGGTATAAACATATTTCGAGA 406 consensus_15516#4 TGCTT--GGACCTGCAG-CATTTGAGCAGGT-ATAAGCCANGCCCACGCGTTCNCNG--- 288 consensus_15516#2 TGCTTTNNAACCTNGAATGGTTGCAATNGGTGATNAACTNG--ATAATGATNNANAATAC 389 consensus_15516#5 TGGCCCTGGAGCTCGTG---CCCGTGTATGTTCTCGGTCTGTGTTGTGGTTTCATCGTTN 230 ** * ** ** * consensus_15516#1 GAGCAGTGGAAGCTAGTGCTCACTGCGTCACTGTGACTGATCGATGAGATCTCG------ 822 consensus_15516#3 GAGCAGTGAAAGCTAGTGCTCACTGCGT-------------------------------- 398 consensus_15516#0 AGATAAAAGAGAAGATAGAAGATCAATGGACTATAAATTTATAGCCAGCTGTAGTACAAA 466 consensus_15516#4 ------------------------------------------------------------ consensus_15516#2 AATTNGAGAAGTNGAA-----ACTAAATGCTCAAATGAGNTNAATGTAGAATNATANATT 444 consensus_15516#5 AA--AATGCTAGTAATAATTTTCCGTATCTTTTTTTTTTGTTA----------------- 271 consensus_15516#1 ------------------------------------------------------------ consensus_15516#3 ------------------------------------------------------------ consensus_15516#0 CTCCAAGATACATGTGTGTTGTGATATGTATGGCCAAATATGAATTGTGTAGTAGTATAT 526 consensus_15516#4 ------------------------------------------------------------ consensus_15516#2 NGTAATNATNNAGTNGANNTTNGAGGGGGTGAGTTACAAGTANNCAAATTTTAAAACTAT 504 consensus_15516#5 ------------------------------------------------------------ consensus_15516#1 ------------------------------------------------------------ consensus_15516#3 ------------------------------------------------------------ consensus_15516#0 GTTTATAGGTAACTATTGTATGAATTGGTTGCTAAATTGACTATGGCTGTGTTTAGATCC 586 consensus_15516#4 ------------------------------------------------------------ consensus_15516#2 AGTTGAAAGTNGTTATTAAAANAGTGANATNAATTTGAGAANNTTAAATTTNANAAACNN 564 consensus_15516#5 ------------------------------------------------------------ consensus_15516#1 ------------------------------------------------------------ consensus_15516#3 ------------------------------------------------------------ consensus_15516#0 AAAATTTGGATACAAACTTCAATCCTTTTCCATCACATCAACATGTCATATACACACAAC 646 consensus_15516#4 ------------------------------------------------------------ consensus_15516#2 ATAATTANATATTGNGAGAAAAACATAGGTNNNTTAAACAAAATTTTAAATTGNNTTTAA 624 consensus_15516#5 ------------------------------------------------------------ consensus_15516#1 ------------------------------------------------------------ consensus_15516#3 ------------------------------------------------------------ consensus_15516#0 TTTTCAGTCACATCATCTCCAATTTCAACCAAAATCTAAACTTTACGCTGAACTAAACAC 706 consensus_15516#4 ------------------------------------------------------------ consensus_15516#2 NAATAAATATANAANANTTTTNAAAAAATTANAGT--AAAATAANTANTAAAAGNNANTN 682 consensus_15516#5 ------------------------------------------------------------ consensus_15516#1 ------------------------------------------------------------ consensus_15516#3 ------------------------------------------------------------ consensus_15516#0 AACCTATAAATGATTTGGAGTCAGTAGTTGGTTGTACTATTAAACTTGCTCTTAAGCAAA 766 consensus_15516#4 ------------------------------------------------------------ consensus_15516#2 AAAANAAAATNAAAAANTTNTAAAAAAGTTANTNNAANAGANAAATAGAAANAANTAGGA 742 consensus_15516#5 ------------------------------------------------------------ consensus_15516#1 ------------------------------------------------------------ consensus_15516#3 ------------------------------------------------------------ consensus_15516#0 GCAACATGCATGCATTCATCTCATCATCAGCCAACCAAATGAGAGATCGATTCGATCGAA 826 consensus_15516#4 ------------------------------------------------------------ consensus_15516#2 AAATTAAACTNANATNATANNNGAAATTAAANANTAAAAGNATAAAATTNGATNATNNGN 802 consensus_15516#5 ------------------------------------------------------------ consensus_15516#1 ------------------------------------------------ consensus_15516#3 ------------------------------------------------ consensus_15516#0 TCGAATGCGAACTCGTCTCTTCCGGGAGGATGATTTGACTGATGGACC 874 consensus_15516#4 ------------------------------------------------ consensus_15516#2 TAANATATTGNT------------------------------------ 814 consensus_15516#5 ------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||