These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15533#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 15 consensus length = 876 fasta sequence [TCATTCTGGACTCCGGTTTCGTCGTCCGTTTTGCCTCCGTCTCCGTCTCCGTCTCCGCCGCTCGCCGAGGCGGGAAAAATAAGCGTTGAATCATGGGCAAGAGGAAGTCCAAAGCAAAACCACCTCCCAAGAAGAGAATGGACAAGCTTGATACTGTCTTTTGCTGTCCATTTTGCAACCACGGAAGTAGTGTTGAGTGTCGCATTGATCTAAAGAACTTAATCGGCGAGGCCTCATGCAGAATTTGTTT-GGAAACTTTTAGCACATC-TGTTAATGCTCTGACTGAACCCATCGACATATAC-AGCGAATGGATCGACGAATGCGAGCGCGTG-AACAACCCTGAGGAGGACAACGCCAACCACTATGAAGATGACAATGCCAGCCGCTACCGCTACGACGAAGAAGAATAGTGGTCCGTTGGCGCTTGTTCCATAAAACGAGTTGCCTGAATGCTGTGCAAAACAGTGTTGATGTAGAGTGATGTGGTACTGTTACCCGTGTCAGTGAACCTTACC-TTACAAT-GGGGC-ATACC-T-GGTAGTCTAAAATAGCATCTGAGAGTAGT-GACACAGTTTTAGCTTTGTG-AGTT-GG-ATAGT-GGT-GCATCAGCTATTCAACTTGTCCTGTACATTTAACATGCCGTGGTCGTGCCTGAACAAGAACTCTAGTATCTTTAGTATTTTGTTCCGTCGTTTATAAGTCATGGCATGTACAAATACAACAATGCTATTGTAGTGTGGATTTGCGTGATGCAACTAGGCTGTAATCGATGGCACTGTACTGTACATGTGAGAGTAAAGCTTTGGAAGTTGGATAGTGGTGCAGTATAACAGAGTAGGATCATGATGCATCAGCTATTCAACTGTACTGTCCAAAAAAAAA] [+] EMBL AK120292 [TCATTCTGGACTCCGGTTTCGTCGTCCGTTTTGCCTCCGTCTCCGTCTCCGTCTCCGCCGCTCGCCGAGGCGGGAAAAATAAGCGTTGAATCATGGGCAAGAGGAAGTCCAAAGCAAAACCACCTCCCAAGAAGAGAATGGACAAGCTTGATACTGTCTTTTGCTGTCCATTTTGCAACCACGGAAGTAGTGTTGAGTGTCGCATTGATCTAAAGAACTTAATCGGCGAGGCCTCATGCAGAATTTGTTT GGAAACTTTTAGCACATC TGTTAATGCTCTGACTGAACCCATCGACATATAC AGCGAATGGATCGACGAATGCGAGCGCGTG AACAACCCTGAGGAGGACAACGCCAACCACTATGAAGATGACAATGCCAGCCGCTACCGCTACGACGAAGAAGAATAGTGGTCCGTTGGCGCTTGTTCCATAAAACGAGTTGCCTGAATGCTGTGCAAAACAGTGTTGATGTAGAGTGATGTGGTACTGTTACCCGTGTCAGTGAACCTTACC TTACAAT GGGGC ATACC T GGTAGTCTAAAATAGCATCTGAGAGTAGT GACACAGTTTTAGCTTTGTG AGTT GG ATAGT GGT GCATCAGCTATTCAACTTGTCCTGTACATTTAACATGCCGTGGTCGTGCCTGAACAAGAACTCTAGTATCTTTAGTATTTTGTTCCGTCGTTTATAAGTCATGGCATGTACAAATACAACAATGCTATTGTAGTGTGGATTTGCGTGATGCAACTAGGCTGTAATCGATGGCACTGTACTGTACATGTGAGAGTAAAGCTTTGGAAGTTGGATAGTGGTGCAGTATAACAGAGTAGGATCATGATGCATCAGCTATTCAAC ] [+] EMBL CF328789 [TCATTCTGGACTCCGGTTTCGTCGTCCGTTTTGCCTCCGTCTCCGTCTCCGTCTCCGCCGCTCGCCGAGGCGGGAAAAATAAGCGTTGAATCATGGGCAAGAGGAAGTCCAAAGCAAAACCACCTCCCAAGAAGAGAATGGACAAGCTTGATACTGTCTTTTGCTGTCCATTTTGCAACCACGGAAGTAGTGTTGAGTGTCGCATTGATCTAAAGAACTTAATCGGCGAGGCCTCATGCAGAATTTGTTT GGAAACTTTTAGCACATC TGTTAATGCTCTGACTGAACCCATCGACATATAC AGCGAATGGATCGACGAATGCGAGCGCGTG AACAACCCTGAGGAGGACAACGCCAACCACTATGAAGATGACAATGCCAGCCGCTACCGCTACGACGAAGAAGAATAGTGGTCCGTTGGCGCTTGTTCCATAAAACGAGTTGCCTGAATGCTGTGCAAAACAGTGTTGATGTAAAGTGATGTGGTACTGTTACCCGTGTCAGTGAACCTTACC TTACAAT GGGGC ATACCTT GGTAGTCTAAAATAGCATCTGAGAGTAGT GACACAG ] [+] EMBL CF319176 [ CATTTTGGACTCCGGTTTCGTCGTCCGTTTTGCCTCCGTCTCCGTCTCCGTCTCCGCCGCTCGCCGAGGCGGGAAAAATAAGCGTTGAATCATGGGCAAGAGGAAGTCCAAAGCAAAACCACCTCCCAAGAAGAGAATGGACAAGCTTGATACTGTCTTTTGCTGTCCATTTTGCAACCACGGAAGTAGTGTTGAGTGTCGCATTGATCTAAAGAACTTAATCGGCGAGGCCTCATGCAGAATTTGTTT GGAAACTTTTAGCACATC TGTTAATGCTCTGACTGAACCCATCGACATATAC AGCGAATGGATCGACGAATGCGAGCGCGTG AACAACCCTGAGGAGGACAACGCCCACCACTATGAAGATGACAATGCCAGCCGCTACCGCTACGACGAAGAAGAATAGTGGTCCGTTGGCGCTTGTTCCATAAAACGAGTTGCCTGAATGCTGTGCAAAACAGTGTTGATGTAGAGTGATGTGGTACTGTTACCCGTGTCAGTGAACCTTACC TTACAAT GGGGC ATACC T GGTAGTCTAAAATAGCATCTGAGAGTAGT GAC ] [+] EMBL CF321402 [ CATTCTGGACTCCGGTTTCGTCGTCCGTTTTGCCTCCGTCTCCGTCTCCGTCTCCGCCGCTCGCCGAGGCGGGAAAAATAAGCGTTGAATCATGGGCAAGAGGAAGTCCAAAGCAAAACCACCTCCCAAGAAGAGAATGGACAAGCTTGATACTGTCTTTTGCTGTCCATTTTGCAACCACGGAAGTAGTGTTGAGTGTCGCATTGATCTAAAGAACTTAATCGGCGAGGCCTCATGCAGAATTTGTTT GGAAACTTTTAGCACATC TGTTAATGCTCTGACTGAACCCATCGACATATAC AGCGAATGGATCGACGAATGCGAGCGCGTG AACAACCCTGAGGAGGACAACGCCAACCACTATGAAGATGACAATGCCAGCCGCTACCGCTACGACGAAGAAGAATAGTGGTCCGTTGGCGCTTGTTCCATAAAACGAGTTGCCTGAATGCTGTGCAAAACAGTGTTGATGTAGAGTGATGTGGTACTGTTACCCGTGTCAGTGAACCTTACC TTACAAT GGGGC ATACC T GGTAGTCTAAAATAGCATCTGAGAGTA ] [+] EMBL CA766170 [atcTTCTGGACTCCGGTTTCGTCGTCCGTTTTGCCTCCGTCTCCGTCTCCGTCTCCGCCGCTCGCCGAGGCGGGAAAAATAAGCGTTGAATCATGGGCAAGAGGAAGTCCAAAGCAAAACCACCTCCCAAGAAGAGAATGGACAAGCTTGATACTGTCTTTTGCTGTCCATTTTGCAACCACGGAAGTAGTGTTGAGTGTCGCATTGATCTAAAGAACTTAATCGGCGAGGCCTCATGCAGAATTTGTTT GGAAACTTTTAGCACATC TGTTAATGCTCTGACTGAACCCATCGACATATAC AGCGAATGGATCGACGAATGCGAGCGCGTG AACAACCCTGAGGAGGACAACGCCAACCACTATGAAGATGACAATGCCAGCCGCTACCGCTACGACGAAGAAGAATAGTGGTCCGTTGGCGCTTGTTCCATAAAACGAGCTGCCTGAATGCTGTGCAAAACAGTGTTGATGTAGAGTGATGTGGTACTGTTACCCGTGTCAGTGAACCTTACC TTACAAT GGGGC ATACC T GGTAGTCTAAAATAGCATCTGAGAGTAGT GACACAGTTTTAGCTTTGTG AGTT GG ATAGT GGT GCATCAGCTATTCAACTTGTCCTGTACATTTAACATGCCGTGGTCGTGCCTGAACAAGAACTCTAG ] [+] EMBL CF277703 [ TCTGGACTCCGGTTTCGTCGTCCGTTTTGCCTCCGTCTCCGTCTCCGTCTCCGCCGCTCGCCGAGGCGGGAAAAATAAGCGTTGAATCATGGGCAAGAGGAAGTCCAAAGCAAAACCACCTCCCAAGAAGAGAATGGACAAGCTTGATACTGTCTTTTGCTGTCCATTTTGCAACCACGGAAGTAGTGTTGAGTGTCGCATTGATCTAAAGAACTTAATCGGCGAGGCCTCATGCAGAATTTGTTT GGAAACTTTTAGCACATC TGTTAATGCTCTGACTGAACCCATCGACATATAC AGCGAATGGATCGACGAATGCGAGCGCGTG AACAACCCTGAGGAGGACAACGCCAACCACTATGAAGATGACAATGCCAGCCGCTACCGCTACGACGAAGAAGAATAGTGGTCCGTTGGCGCTTGTTCCATAAAACGAGTTGCCTGAATGCTGTGCAAAACAGTGTTGATGTAGAGTGATGTGGTACTGTTACCCGTGTCAGTGAACCTTACC TTACAAT GGGGC ATACC TGGGTAGTCTAAAATAGCATCTGAGAGTAGT GACACAGTTTTAGCTTTGTG AGTT GGAATAGT GGT GCATCAGCTATTCAACTTGTCCTGTACATTTAACATGCCGTGGTCGTGCCTGAACAAGAACTCTAGTATCT ] [+] EMBL CF279682 [ CTCCGGTTTCGTCGTCCGTTTTGCCTCCGTCTCCGTCTCCGTCTCCGCCGCTCGCCGAGGCGGGAAAAATAAGCGTTGAATCATGGGCAAGAGGAAGTCCAAAGCAAAACCACCTCCCAAGAAGAGAATGGACAAGCTTGATACTGTCTTTTGCTGTCCATTTTGCAACCACGGAAGTAGTGTTGAGTGTCGCATTGATCTAAAGAACTTAATCGGCGAGGCCTCATGCAGAATTTGTTT GGAAACTTTTAGCACATC TGTTAATGCTCTGACTGAACCCATCGACATATAC AGCGAATGGATCGACGAATGCGAGCGCGTG AACAACCCTGAGGAGGACAACGCCAACCACTATGAAG ] [+] EMBL C29136 [ gngntntnTCGTCGTCCGTTTTGCCTCCGTCTCCGTCTCCGTCTCCGCCGCTCGCCGAGGCGGGAAAAATAAGCGTTGAATCATGGGCAAGAGGAAGTCCAAAGCAAAACCACCTCCCAAGAAGAGAATGGACAAGCTTGATACTGTCTTTTGCTGTCCATTTTGCAACCACGGAAGTAGTGTTGAGTGTCGCATTGATCTAAAGAACTTAATCGGCGAGGCCTCATGCAGAATTTGTTT GGAAACTTTTAGCACATCTTGTTAATGCTCTGACTGAACCCATCGACATATACAAGCGAATGGATCGACGAATGNGAGCGCGTG AACAACCCTGAGGAGGACAACGNCAACCACTATGNAGATGACAAT ] [+] EMBL AU065480 [ CGTCCGTTTTGCCTCCGTCTCCGTCTCCGTCTCCGCCGCTCGCCGAGGCGGGAAAAATAAGCGTTGAATCATGGGCAAGAGGAAGTCCAAAGCAAAACCACCTCCCAAGAAGAGAATGGACAAGCTTGATACTGTCTTTTGCTGTCCATTTTGCAACCACGGAAGTAGTGTTGAGTGTCGCATTGATCTAAAGAACTTAATCGGCGAGGCCTCATGCAGAATTTGTTT GGAAACTTTTAGCACATC TGTTAATGCTCTGACTGAACCCATCGACATATAC AGCGAATGGATCGACGAATGCGAGCGCGTG AACAACCCTGAGGAGGACAACGCCAACCACT ] [+] EMBL AU069654 [ ATGGGCAAGAGGAAGTCCAAAGCAAAACCACCTCCCAAGAAGAGAATGGACAAGCTTGATACTGTCTTTTGCTGTCCATTTTGCAACCACGGAAGTAGTGTTGAGTGTCGCATTGATCTAAAGAACTTAATCGGCGAGGCCTCATGCAGAATTTGTTTGGGAAACTTTTAGCACATC TGTTAATGCTCTGACTGAACCCATCGACATATAC AGCGAATGGATCGACGAATGCGAGCGCGTGNAACAA ] [+] EMBL AU063370 [ GATACTGTCTTTTGCTGTCCATTTTGCAACCACGGAAGTAGTGTTGAGTGTCGCATTGATCTAAAGAACTTAATCGGCGAGGCCTCATGCAGAATTTGTTT GGAAACTTTTAGCACATC TGTTAATGCTCTGACTGAACCCATCGACATATAC AGCGAATGGATCGACGAATGCGAGCGCGTG AACAACCCTGAGGAGGACAACGCCAACCACTATGAAGATGACAATGNCAGCCGCTACCGCTACGACGAAGAAGAATAGTGGTCCGTTGGCGCTTGTTCCATAAAACGAGTTGCCTGAATGCTGTGCAAAACAGTGTTGATGTAGAGTGATGTGGTACTGTTACCCGTGTCAGTG ACCTTACC TTACAAT GGGGC ATA C T GGAAGTCT AAATAGCAT TTAGGGTAGT GCCACAG TTTAG TTTG ] [+] EMBL AU063476 [ GATACTGTCTTTTGCTGTCCATTTTGCAACCACGGAAGTAGTGTTGAGTGTCGCATTGATCTAAAGAACTTAATCGGCGAGGCCTCATGCAGAATTTGTTT GGAAACTTTTAGCACATC TGTTAATGCTCTGACTGAACCCATCGACATATAC AGCGAATGGNTCGACGAATGCGAGCGCGTG AACAACCCTGAGGAGGACAACGCCAACCACTATGAAGATGACAATGCCAGCCGCTACCGCTACGACGAAGAAGAATAGTGGTCCGTTGGCGCTTGTTCCATAAAACGAGTTGCCTGAATGCTGTNCAAAACAGTGTTGATGTAGAGTGATGTGGTACTGTTACCCGTGTCAGTGAACCTTACCTTTACAATGGGGGCAATACC T GGTAGTCTNAAATAGgca ] [+] EMBL C91584 [ GTGTTGAGTGTCGCATTGATCTAAAGAACTTAATCGGCGAGGCCTCATGCAGAATTTGTTT GGAAACTTTTAGCACATC TGTTAATGCTCTGACTGAACCCATCGACATATAC AGCGAATGGATCGACGAATGCGAGCGCGTG AACAACCCTGAGGAGGACAACGCCAACCACTATGAAGATGACAATGCCAGCCGCTACCGCTACGACGAAGAAGAATAGTGGTCCGTTGGCGCTTGTTCCATAAAACGAGTTGCCTGAATGCTGTGCAAAACAGTGTTGATGTAGAGTGATGTGGTACTGTTACCCGTGTCAGTGAACCTTACC TTACAAT GGGGC ATACC T GGTAGTCTAAAATAGCATCTGAGAGTANTGGACACAGTTTTAGCTTTGTGAAGTTGGG ATAGTGGGTGGCATCAGCTATTCAACTTGTCCTGTACATTT ] [+] EMBL AU182161 [ TGAATGCTGTGCAAAACAGTGTTGATGTAGAGTGATGTGGTACTGTTACCCGTGTCAGTGAACCTTACC TTACAAT GGGGC ATACC T GGTAGTCTAAAATAGCATCTGAGAGTAGT GACACAGTTTTAGCTTTGTG AGTT GG ATAGT GGT GCATCAGCTATTCAACTTGTCCTGTACATTTAACATGCCGTGGTCGTGCCTGAACAAGAACTCTAGTATCTTTAGTATTTTGTTCCGTCGTTTATAAGTCATGGCATGTACAAATACAACAATGCTATTGTAGTGTGGATTTGCGTGATGCAACTAGGCTGTAATCGATGGCACTGTACTGTACATGTGAGAGTAAAGCTTTGGAAGTTGGATAGTGGTGCAGTATAACAGAGTAGGATCATGATGCATCAGCTATTCAACTGTACTGTCCAAAAAAAAA] [-] EMBL CF292438 [ ATACC T GGTAGTCTAAAATAGCATCTGAGAGTAGT GACACAGTTTTAGCCTTGTG AGTT GG ATAGT GGT GCATCAGCTATTCAACTTGTCCTGTACATTTAACATGCCGTGGTCGTGCTTGAACAAGAACTCTAGTATCTTTAGTATTTTGTTCCGTCGTTTATAAGTCATGGCATGTACAAATACAACAATGCTATTGTAGTGTGGATTTGCGTGATGCAACTAGGCTGTAATCGATGGCACTGTACTGTACATGTGAGAGTAAAGCTTTGGAAGTTGGATAGTGGTGCAGTATAACAGAGTAGGATCATGATGCATCAGCTATTCAACTGTACTGTCCAAAAAA ] consensusID : consensus_15533#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 670 fasta sequence [CTTTNATACTGTCTTTTGGCTGTCCATTTTGCAACCACGGAAGTCAGTGTTGAGTGTCGCATTGATCTAAAGAACTTAAATCGGCGAGGCNTCATGCAGAATTTGTTTGGAAACTTTTAGCACATCTGTTAATGCTCTGACTGAACCCATCGACATATACAGCGAATGGATCGACGAATGCGAGCGCGTGAACAACCCTGAGGAGGACAACGCCAACCACTATGAAGATGACAATGCCAG-CCGCTACCGCTACGACG-AAGAAGAATAGTGGTCCGTTGGCGCTTGTTCC-ATAAAACGAGTTGC-CTGAATGCTGTGC-AAAACAGTG-TTGATGTAGAGTGATGTGGTACTGTTACCCGTGTCAGTGAACCTTACCTTACAATGGGGCATACCTGGTAGTCTAAAATAGCATCTGAGAGTAGTGACACAGTTTTAGCTTTGTGAGTTGGATAGTGGTGCATCAGCTATTCAACTTGTCCTGTACATTTAACATGCCGTGGTCGTGCCTGAACAAGAACTCTAGTATCTTTAGTATTTTGTTCCGTCGTTTATAAGTCATGGCATGTACAAATACAACAATGCTATTGTAGTGTGGATTTGCGTGATGCAACTAGGCTGTAATCGATGGCACTGTACTGTACATGTGAGAGTAAAGCTTTGGAAAAAAAAAAAA] [+] EMBL AU100948 [CTTTNATACTGTCTTTTGGCTGTCCATTTTGCAACCACGGAAGTCAGTGTTGAGTGTCGCATTGATCTAAAGAACTTAAATCGGCGAGGCNTCATGCAGAATTTGTTTGGAAACTTTTAGCACATCTGTTAATGCTCTGACTGAACCCATCGACATATACAGCGAATGGATCGACGAATGCGAGCGCGTGAACAACCCTGAGGAGGACAACGCCAACCACTATGAAGATGACAATGCCAG CCGCTACCGCTACGACG AAGAAGAATAGTGGTCCGTTGGCGCTTGTTCC ATAAAACGAGTTGC CTGAATGCTGTGC AAAACAGTG TTGATGTAGAGTGATGTGGTACTGTTACCCGTGTCAGTGAACCTTACCTTACAATGGGGCATACCTGGTAGTCTAAAATAGCATCTGAGAGTAGTGACACAGTTTTAGCTTTGTGAGTTGGATAGTGGTGCATCAGCTATTCAACTTGTCCTGTACATTTAACATGCCGTGGTCGTGCCTGAACAAGAACTCTAGTATCTTTAGTATTTTGTTCCGTCGTTTATAAGTCATGGCATGTACAAATACAACAATGCTATTGTAGTGTGGATTTGCGTGATGCAACTAGGCTGTAATCGATGGCACTGTACTGTACATGTGAGAGTAAAGCTTTGGAAAAAAAAAAAA] [+] EMBL AU161394 [ GGATCGACNAATGCGAGCGCGTGACCAACCCTGAGGAGGACAACGCCAACCACTATGAANATGACAATGCCAGCCCGCTACCGCTACGACGAAAGAAGAATAGTGGTCCGTTGGCGCTTGTTCCAATAAAACGAGTTGCNTTGAATGCTGTGCAAAAACAGTGTTTGATGTAGAGTNATGTGGTACTGTTACCCGTGTCAGTGAACCTTACCTTACAATGGGGCATACCTGGTAGTCTAAAATAGCATCTGAGAGTAGTGACACAGTTTTAGCTTTGTGAGTTGGATAGTGGTGCATCAGCTATTCAACTTGTCCTGTACATTTAACATGCCGTGGTCGTGCCTGAACAAGAACTCTAGTATCTTTAGTATTTTGTTCCGTCGTTTATAAGTCATGGCATGTACAAATACAACAATGCTATTGTAGTGTGGATTTGCGTGATGCAACTAGGCTGTAATCGATGGCACTGTACTGTACATGTGAGAGTAAAGCTTTGGAAAAAAAAAAAA] [-] EMBL CF319177 [ AAAACAGTG TTGATGTAGAGTGATGTGGTACTGTTACCCGTGTCAGTGAACCTTACCTTACAATGGGGCATACCTGGTAGTCTAAAATAGCATCTGAGAGTAGTGACACAGTTTTAGCTTTGTGAGTTGGATAGTGGTGCATCAGCTATTCAACTTGTCCTGTACATTTAACATGCCGTGGTCGTGCCTGAACAAGAACTCTAGTATCTTTAGTATTTTGTTCCGTCGTTTATAAGTCATGGCATGTACAAATACAACAATGCTATTGTAGTGTGGATTTGCGTGATGCAACTAGGCTGTAATCGATGGCACTGTACTGTACATGTGAGAGTAAAGCTTTGGAAGTTAAAAAA ] consensusID : consensus_15533#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 511 fasta sequence [AACNACCCCTGAGGAGGACCAAGCCCACCACCTATGAAGATGACNATGCCAGCCGCTACCGCTACGACGAAGAAGAATAGTGGTCCGCTTGGCGCCTTGTTCCACTAAACCGAGTTGCCTGAATGCTGTGCCAAACCACGTGTTGATGTAGAGTGATGTGGTACTGTTACCCGTGTCACGTGAACCCTTACCCTTACCACATGGGGCATACCTGGTAGTCTAAAATAGCACTCTGAGAGTAGTGACACCACGTTTTAGCTTTGTGAGTTGGATAAGTGGTGCACTCAGCTATTCAAACTTGTCCTGNACCACTTTAACACACTGCCCGCTGGTCGTGCCTGAGACCCAGANACCTTCTAGTATCTTTAGTATTTTGTTCCGTCGTTTATAAGTCACTGGCATGTACCAATACACACCCATGCTATTGTAGTGTGGATTTGCGTGATGCAACTAGGCTGTAATCGATGGCCCTGTACTGTACATGTGAGAGTAAAGCTTTGGAAAAAAAAAA] [+] EMBL BQ908636 [AACNACCCCTGAGGAGGACCAAGCCCACCACCTATGAAGATGACNATGCCAGCCGCTACCGCTACGACGAAGAAGAATAGTGGTCCGCTTGGCGCCTTGTTCCACTAAACCGAGTTGCCTGAATGCTGTGCCAAACCACGTGTTGATGTAGAGTGATGTGGTACTGTTACCCGTGTCACGTGAACCCTTACCCTTACCACATGGGGCATACCTGGTAGTCTAAAATAGCACTCTGAGAGTAGTGACACCACGTTTTAGCTTTGTGAGTTGGATAAGTGGTGCACTCAGCTATTCAAACTTGTCCTGNACCACTTTAACACACTGCCCGCTGGTCGTGCCTGAGACCCAGANACCTTCTAGTATCTTTAGTATTTTGTTCCGTCGTTTATAAGTCACTGGCATGTACCAATACACACCCATGCTATTGTAGTGTGGATTTGCGTGATGCAACTAGGCTGTAATCGATGGCCCTGTACTGTACATGTGAGAGTAAAGCTTTGGAAAAAAAAAA] consensusID : consensus_15533#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 461 fasta sequence [AGAATTTGTTTGGAAACTTTTAGCACATCTGTTAATGCTCTGACTGAACCCATCGACATATACAGCGAATGGATCGACGAATGCGAGCGCGTGAACAACCCTGAGGAGGACAACGCCAACCCCTATGAAGATGACAATGCCAGCCGCTACCGCTACGACGAAGAAGAATAGTGGTCCGTTGGCGCTTGTTCCATAAAACGAGTTGCCTGAATGCTGTGCAAAACAGTGTTGATGTAGAGTGATGTGGTACTGTTACCCGTGTCAGTGAACCTTACCTTACAATGGGGCATACCTGGTAGTTTAAAATAGCATTTGAGAGTAGTGACCCAGTTTTAGCTTTGTGAGTTGGATAGTGGTGCATCAGCTATTCAACTTGTCCTGTACATTTAACATGCCGTGGTCGTGCCTGAACAAGAACTTTAGTATCTTTAGTATTTAAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CF279681 [AGAATTTGTTTGGAAACTTTTAGCACATCTGTTAATGCTCTGACTGAACCCATCGACATATACAGCGAATGGATCGACGAATGCGAGCGCGTGAACAACCCTGAGGAGGACAACGCCAACCCCTATGAAGATGACAATGCCAGCCGCTACCGCTACGACGAAGAAGAATAGTGGTCCGTTGGCGCTTGTTCCATAAAACGAGTTGCCTGAATGCTGTGCAAAACAGTGTTGATGTAGAGTGATGTGGTACTGTTACCCGTGTCAGTGAACCTTACCTTACAATGGGGCATACCTGGTAGTTTAAAATAGCATTTGAGAGTAGTGACCCAGTTTTAGCTTTGTGAGTTGGATAGTGGTGCATCAGCTATTCAACTTGTCCTGTACATTTAACATGCCGTGGTCGTGCCTGAACAAGAACTTTAGTATCTTTAGTATTTAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_15533#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 398 fasta sequence [TCCGTTGGGGGGGGTTCCATGGAGTGAGTTGCATGAATTTTGGGCAAAACAGCGTTTATGTAGAGTTATGTGGTAATGTTGCCCGTGTCAGTTAACCTTTCCTTTCAATGGGGAAAACCTGGGGGTTTGGAATAGCATATAAGAGTAGTGTCCCAGTTTTAGTTTTGTGAGTTGGATAGTGGTGCAGCAGCTATTAAACTTGTCCTGTACATTTAACATGCTGTGGTGGTGCCTTAACAAGGTTTTTAGAATATTAAGAAAAAAGAACAGTAGAAAAAAAATAAAGGAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACACTGTCATGCCGTGACGT] [-] EMBL CF321403 [TCCGTTGGGGGGGGTTCCATGGAGTGAGTTGCATGAATTTTGGGCAAAACAGCGTTTATGTAGAGTTATGTGGTAATGTTGCCCGTGTCAGTTAACCTTTCCTTTCAATGGGGAAAACCTGGGGGTTTGGAATAGCATATAAGAGTAGTGTCCCAGTTTTAGTTTTGTGAGTTGGATAGTGGTGCAGCAGCTATTAAACTTGTCCTGTACATTTAACATGCTGTGGTGGTGCCTTAACAAGGTTTTTAGAATATTAAGAAAAAAGAACAGTAGAAAAAAAATAAAGGAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACACTGTCATGCCGTGACGT] consensusID : consensus_15533#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 395 fasta sequence [GTTCCCGTTACGAAAAAAAAAAATAGTGGTCCGTTGGCGCTTGTTCCATAAAACGAGTTGCTTAAATGTTGTGCAAAACAGTGTTAATGAAAAGTAATGTGGTATTGTTACCCGTGTCAGTGACCCTTCCCTTCCAATGGGGCATACTTGGTAGTTTAAAATAGCTTTTGAGAGTAGTGCCCCAGTTTTAGCTTTGTGAGTTGGAAAGTGGGGCATCAGTTATTCAACTTGTCCTGAACATTTAACATCCCGTGGTGGGGCTTGACCAAAAACTTTAGTATTTTAAGTATTTTGTCCCGTCGTTTATAAGTCAGGGCATGTCCAAATCCACCAATGTTATTGTAGTGTGGATTGGCGTGACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CF277704 [GTTCCCGTTACGAAAAAAAAAAATAGTGGTCCGTTGGCGCTTGTTCCATAAAACGAGTTGCTTAAATGTTGTGCAAAACAGTGTTAATGAAAAGTAATGTGGTATTGTTACCCGTGTCAGTGACCCTTCCCTTCCAATGGGGCATACTTGGTAGTTTAAAATAGCTTTTGAGAGTAGTGCCCCAGTTTTAGCTTTGTGAGTTGGAAAGTGGGGCATCAGTTATTCAACTTGTCCTGAACATTTAACATCCCGTGGTGGGGCTTGACCAAAAACTTTAGTATTTTAAGTATTTTGTCCCGTCGTTTATAAGTCAGGGCATGTCCAAATCCACCAATGTTATTGTAGTGTGGATTGGCGTGACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15533#0 TCATTCTGGACTCCGGTTTCGTCGTCCGTTTTGCCTCCGTCTCCGTCTCCGTCTCCGCCG 60 consensus_15533#3 ------------------------------------------------------------ consensus_15533#1 ------------------------------------------------------------ consensus_15533#2 ------------------------------------------------------------ consensus_15533#5 ------------------------------------------------------------ consensus_15533#4 ------------------------------------------------------------ consensus_15533#0 CTCGCCGAGGCGGGAAAAATAAGCGTTGAATCATGGGCAAGAGGAAGTCCAAAGCAAAAC 120 consensus_15533#3 ------------------------------------------------------------ consensus_15533#1 ------------------------------------------------------------ consensus_15533#2 ------------------------------------------------------------ consensus_15533#5 ------------------------------------------------------------ consensus_15533#4 ------------------------------------------------------------ consensus_15533#0 CACCTCCCAAGAAGAGAATGGACAAGCTTGATACTGTCTTTTG-CTGTCCATTTTGCAAC 179 consensus_15533#3 ------------------------------------------------------------ consensus_15533#1 -------------------------CTTTNATACTGTCTTTTGGCTGTCCATTTTGCAAC 35 consensus_15533#2 ------------------------------------------------------------ consensus_15533#5 ------------------------------------------------------------ consensus_15533#4 ------------------------------------------------------------ consensus_15533#0 CACGGAAGT-AGTGTTGAGTGTCGCATTGATCTAAAGAACTTAA-TCGGCGAGGCCTCAT 237 consensus_15533#3 ------------------------------------------------------------ consensus_15533#1 CACGGAAGTCAGTGTTGAGTGTCGCATTGATCTAAAGAACTTAAATCGGCGAGGCNTCAT 95 consensus_15533#2 ------------------------------------------------------------ consensus_15533#5 ------------------------------------------------------------ consensus_15533#4 ------------------------------------------------------------ consensus_15533#0 GCAGAATTTGTTTGGAAACTTTTAGCACATCTGTTAATGCTCTGACTGAACCCATCGACA 297 consensus_15533#3 --AGAATTTGTTTGGAAACTTTTAGCACATCTGTTAATGCTCTGACTGAACCCATCGACA 58 consensus_15533#1 GCAGAATTTGTTTGGAAACTTTTAGCACATCTGTTAATGCTCTGACTGAACCCATCGACA 155 consensus_15533#2 ------------------------------------------------------------ consensus_15533#5 ------------------------------------------------------------ consensus_15533#4 ------------------------------------------------------------ consensus_15533#0 TATACAGCGAATGGATCGACGAATGCGAGCGCGTGAACAACCCTGAGGAGGACAACGCCA 357 consensus_15533#3 TATACAGCGAATGGATCGACGAATGCGAGCGCGTGAACAACCCTGAGGAGGACAACGCCA 118 consensus_15533#1 TATACAGCGAATGGATCGACGAATGCGAGCGCGTGAACAACCCTGAGGAGGACAACGCCA 215 consensus_15533#2 ----------------------------------AACNACCCCTGAGGAGGACCAAGCCC 26 consensus_15533#5 ------------------------------------------------------------ consensus_15533#4 ------------------------------------------------------------ consensus_15533#0 ACC-ACTATGAAGATGACAATGCCAGCCGCTACCGCTACGACGAAGAAGAATAGTGGTCC 416 consensus_15533#3 ACC-CCTATGAAGATGACAATGCCAGCCGCTACCGCTACGACGAAGAAGAATAGTGGTCC 177 consensus_15533#1 ACC-ACTATGAAGATGACAATGCCAGCCGCTACCGCTACGACGAAGAAGAATAGTGGTCC 274 consensus_15533#2 ACCACCTATGAAGATGACNATGCCAGCCGCTACCGCTACGACGAAGAAGAATAGTGGTCC 86 consensus_15533#5 ----------------------------GTTCCCGTTACGAAAAAAAAAAATAGTGGTCC 32 consensus_15533#4 ---------------------------------------------------------TCC 3 *** consensus_15533#0 G-TTGGCGC-TTGTTCCA-TAAAACGAGTTGCCTGAATGCTGTGCAAAACA--GTGTTGA 471 consensus_15533#3 G-TTGGCGC-TTGTTCCA-TAAAACGAGTTGCCTGAATGCTGTGCAAAACA--GTGTTGA 232 consensus_15533#1 G-TTGGCGC-TTGTTCCA-TAAAACGAGTTGCCTGAATGCTGTGCAAAACA--GTGTTGA 329 consensus_15533#2 GCTTGGCGCCTTGTTCCACTAAACCGAGTTGCCTGAATGCTGTGCCAAACCACGTGTTGA 146 consensus_15533#5 G-TTGGCGC-TTGTTCCA-TAAAACGAGTTGCTTAAATGTTGTGCAAAACA--GTGTTAA 87 consensus_15533#4 G-TTGGGGG-GGGTTCCA-TGGAGTGAGTTGCATGAATTTTGGGCAAAACA--GCGTTTA 58 * **** * ****** * * ******* * *** ** ** **** * *** * consensus_15533#0 TGTAGAGTGATGTGGTACTGTTACCCGTGTCA-GTGAACCTTA--CCTTACAA--TGGGG 526 consensus_15533#3 TGTAGAGTGATGTGGTACTGTTACCCGTGTCA-GTGAACCTTA--CCTTACAA--TGGGG 287 consensus_15533#1 TGTAGAGTGATGTGGTACTGTTACCCGTGTCA-GTGAACCTTA--CCTTACAA--TGGGG 384 consensus_15533#2 TGTAGAGTGATGTGGTACTGTTACCCGTGTCACGTGAACCCTTACCCTTACCACATGGGG 206 consensus_15533#5 TGAAAAGTAATGTGGTATTGTTACCCGTGTCA-GTGACCCTTC--CCTTCCAA--TGGGG 142 consensus_15533#4 TGTAGAGTTATGTGGTAATGTTGCCCGTGTCA-GTTAACCTTT--CCTTTCAA--TGGGG 113 ** * *** ******** **** ********* ** * ** * **** * * ***** consensus_15533#0 CATACCTGGTAGTCTAAAATAGCA-TCTGAGAGTAGTGACACA--GTTTTAGCTTTGTGA 583 consensus_15533#3 CATACCTGGTAGTTTAAAATAGCA-TTTGAGAGTAGTGACCCA--GTTTTAGCTTTGTGA 344 consensus_15533#1 CATACCTGGTAGTCTAAAATAGCA-TCTGAGAGTAGTGACACA--GTTTTAGCTTTGTGA 441 consensus_15533#2 CATACCTGGTAGTCTAAAATAGCACTCTGAGAGTAGTGACACCACGTTTTAGCTTTGTGA 266 consensus_15533#5 CATACTTGGTAGTTTAAAATAGCT-TTTGAGAGTAGTGCCCCA--GTTTTAGCTTTGTGA 199 consensus_15533#4 AAAACCTGGGGGTTTGGAATAGCA-TATAAGAGTAGTGTCCCA--GTTTTAGTTTTGTGA 170 * ** *** ** * ****** * * ********* * * ******* ******* consensus_15533#0 GTTGGATA-GTGGTGCA-TCAGCTATTCAA-CTTGTCCTGTACA--TTTAACATGCCG-- 636 consensus_15533#3 GTTGGATA-GTGGTGCA-TCAGCTATTCAA-CTTGTCCTGTACA--TTTAACATGCCG-- 397 consensus_15533#1 GTTGGATA-GTGGTGCA-TCAGCTATTCAA-CTTGTCCTGTACA--TTTAACATGCCG-- 494 consensus_15533#2 GTTGGATAAGTGGTGCACTCAGCTATTCAAACTTGTCCTGNACCACTTTAACACACTGCC 326 consensus_15533#5 GTTGGAAA-GTGGGGCA-TCAGTTATTCAA-CTTGTCCTGAACA--TTTAACATCCCG-- 252 consensus_15533#4 GTTGGATA-GTGGTGCA-GCAGCTATTAAA-CTTGTCCTGTACA--TTTAACATGCTG-- 223 ****** * **** *** *** **** ** ********* ** ******* * * consensus_15533#0 ---TGGTCGTGCCTGAA---CAAGAAC--TCTAGTATCTTTAGTATTTTGTTCCGTCGTT 688 consensus_15533#3 ---TGGTCGTGCCTGAA---CAAGAAC--TTTAGTATCTTTAGTATTTAAAAAAAAAAAA 449 consensus_15533#1 ---TGGTCGTGCCTGAA---CAAGAAC--TCTAGTATCTTTAGTATTTTGTTCCGTCGTT 546 consensus_15533#2 CGCTGGTCGTGCCTGAGACCCAGANACCTTCTAGTATCTTTAGTATTTTGTTCCGTCGTT 386 consensus_15533#5 ---TGGTGGGGCTTGAC---CAAAAAC--TTTAGTATTTTAAGTATTTTGTCCCGTCGTT 304 consensus_15533#4 ---TGGTGGTGCCTTAA---CAAGGTT--TTTAGAATATTAAGAAAAAAGAACAGTAGAA 275 **** * ** * * ** * *** ** ** ** * consensus_15533#0 TATAAGTCA-TGGCATGTACAAATACAA--CAATGCTATTGTAGTGTGGATTTGCGTGAT 745 consensus_15533#3 AAAAAAAAA-AAA----------------------------------------------- 461 consensus_15533#1 TATAAGTCA-TGGCATGTACAAATACAA--CAATGCTATTGTAGTGTGGATTTGCGTGAT 603 consensus_15533#2 TATAAGTCACTGGCATGTACCAATACACACCCATGCTATTGTAGTGTGGATTTGCGTGAT 446 consensus_15533#5 TATAAGTCA-GGGCATGTCCAAATCCAC--CAATGTTATTGTAGTGTGGATTGGCGTGAC 361 consensus_15533#4 AAAAAATAAAGGAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 335 * ** * consensus_15533#0 GCAACTAGGCTGTAATCGATGGCACTGTACTGTACATGTGAGAGTAAAGCTTTGGAAGTT 805 consensus_15533#3 ------------------------------------------------------------ consensus_15533#1 GCAACTAGGCTGTAATCGATGGCACTGTACTGTACATGTGAGAGTAAAGCTTTGGAAAAA 663 consensus_15533#2 GCAACTAGGCTGTAATCGATGGCCCTGTACTGTACATGTGAGAGTAAAGCTTTGGAAAAA 506 consensus_15533#5 GCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA-------------------------- 395 consensus_15533#4 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACACTGTCATGCCGTGA 395 consensus_15533#0 GGATAGTGGTGCAGTATAACAGAGTAGGATCATGATGCATCAGCTATTCAACTGTACTGT 865 consensus_15533#3 ------------------------------------------------------------ consensus_15533#1 AAAAAAA----------------------------------------------------- 670 consensus_15533#2 AAAAA------------------------------------------------------- 511 consensus_15533#5 ------------------------------------------------------------ consensus_15533#4 CGT--------------------------------------------------------- 398 consensus_15533#0 CCAAAAAAAAA 876 consensus_15533#3 ----------- consensus_15533#1 ----------- consensus_15533#2 ----------- consensus_15533#5 ----------- consensus_15533#4 ----------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||