These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15553#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 16 consensus length = 1502 fasta sequence [GCCGCTACGCCGCGGCAGCTCGGCGATCCCAGAAAGGCAGAAGAAATCAAGAAACCAACCACCAACTAGCTACTGTAGTTGACTGACAGTGATAGTGGCAGTCATGCAGGTCGTGGGAACCGTGCGTGTCAGTGGCTGCGGC-GC-GGTGGTGGCGCCCTCGCGCCGGCAGTGCCGCGTGTCCGCGGCG-G-TGCTGACGGCCGCGGAGACGGCGACGGCGACGCGGCGCCGCGT-G-ACGCACTCGATGCCGCCGGAGAAGGCGG-AGGTGTTCCGGTCGCTGGAAGGGTGGGCGAGGTCGTCGCTGCTGCCGCTGCTCAAGCCCGTGGAGGAGTGCTGGC-AGCCGACGGACTTCCTGCCGGAC-TCGTCGTCGGAGATGTTCGAGCACCAGGTCCACGAGCTCCGCGCGCGCGCCGCG-GGGCT-CCCCGA-CGAGTACTTCGTCG-TGCTGGT-CGGGGACATGATTACCGAGGAGGCGCTGCCGACGTACCAGACCATGATCAACACGCTCGACGGCGTCCGCGACGAGACCGGCGCCAGCGCCTGCCCCTGGGCCGTCTGGACGCGCACCTGGACCGCCGAGGAGAACCGCCACGGCGACATCCTCGGCAAGTACATGTACCTCTCCGGCCGCGTCGACATGCGCATGGTCGAGAAGACCGTCCAGTACCTCATCGGCTCCGGCATGGATCCGGGGACGGAGAACAACCCGTACCTGGGGTTCGTGTACACCAGCTTCCAGGAGCGCGCGACGGCCGTGTCGCACGGGAACACGGCGCGCCTCGCCAGGGCGCACGGGGACGACGTCCTGGCGCGCACCTGCGGCACCATCGCCGCCGACGAGAAGCGGCACGAGACGGCGTACGGGCGCATCGTGGAGCAGCTGCTGCGGCTCGACCCGGACGGCGCCATGCTCGCCATCGCCGACATGATGCACAAGCGGATCACCATGCCCGCGCACCTCATGCACGACGGCCGCGACATGAACCTGTTCGACCACTTCGCCGCCGTGGCGCAGCGCCTCAACGTCTACACCGCGCGCGACTACGCCGACATCGTCGAGTTCCTCGTCAAGCGGTGGAAGCTGGAGACCCTGGAGACTGGGCTCTCCGGCGAGGGCCGGAGGGCCCGGGACTTCGTGTGCGGGCTCGCGAAGAGGATGCGGCGGGCCGCGGAGCGGGCTGAGGACAGGGCTAAGAAGGATGAGCAGAGGAAGGTCAAGTTCAGCTGGATCTATGATAGGGAAGTGATTGTCTAGTTTAACTTGTCTTGGTTGAATTCTGAATTCCCAGTCCTAGATGATCATGCCATTTCGTTATCATCTCTGTTCTTGTGTTCTCTTTGCAATGCAGTAAATTGGTAATAGTTAATGGTGCTTTGATCTTGGAAATTTGGCGTTGATGTATTTTCTGGTATCATTAGTGAAGATAGTTTGGTTTCTTTTCACATTTGATGATTTGAACCCTCAAATATTAATGTTGAAATACAGAATTTCNCATTTCAAAAAAAAA] [+] EMBL AU225390 [GCCGCTACGCCGCGGCAGCTCGGCGATCCCAGAAAGGCAGAAGAAATCAAGAAACCAACCACCAACTAGCTACTGTAGTTGACTGACAGTGATAGTGGCAGTCATGCAGGTCGTGGGAACCGTGCGTGTCAGTGGCTGCGGC GC GGTGGTGGCGCCCTCGCGCCGGCAGTGCCGCGTGTCCGCGGCG G TGCTGACGGCCGCGGAGACGGCGACGGCGACGCGGCGCCGCGT G ACGCACTCGATGCCGCCGGAGAAGGCGG AGGTGTTCCGGTCGCTGGAAGGGTGGGCGAGGTCGTCGCTGCTGCCGCTGCTCAAGCCCGTGGAGGAGTGCTGGC AGCCGACGGACTTCCTGCCGGAC TCGTCGTCGGAGATGTTCGAGCACCAGGTCCACGAGCTCCGCGCGCGCGCCGCG GGGCT CCCCGA CGAGTACTTCGTCG TGCTGGT CGGG ] [+] EMBL AK101524 [ AGAAGAAATCAAGAAACCAACCACCAACTAGCTACTGTAGTTGACTGACAGTGATAGTGGCAGTCATGCAGGTCGTGGGAACCGTGCGTGTCAGTGGCTGCGGC GC GGTGGTGGCGCCCTCGCGCCGGCAGTGCCGCGTGTCCGCGGCG G TGCTGACGGCCGCGGAGACGGCGACGGCGACGCGGCGCCGCGT G ACGCACTCGATGCCGCCGGAGAAGGCGG AGGTGTTCCGGTCGCTGGAAGGGTGGGCGAGGTCGTCGCTGCTGCCGCTGCTCAAGCCCGTGGAGGAGTGCTGGC AGCCGACGGACTTCCTGCCGGAC TCGTCGTCGGAGATGTTCGAGCACCAGGTCCACGAGCTCCGCGCGCGCGCCGCG GGGCT CCCCGA CGAGTACTTCGTCG TGCTGGT CGGGGACATGATTACCGAGGAGGCGCTGCCGACGTACCAGACCATGATCAACACGCTCGACGGCGTCCGCGACGAGACCGGCGCCAGCGCCTGCCCCTGGGCCGTCTGGACGCGCACCTGGACCGCCGAGGAGAACCGCCACGGCGACATCCTCGGCAAGTACATGTACCTCTCCGGCCGCGTCGACATGCGCATGGTCGAGAAGACCGTCCAGTACCTCATCGGCTCCGGCATGGATCCGGGGACGGAGAACAACCCGTACCTGGGGTTCGTGTACACCAGCTTCCAGGAGCGCGCGACGGCCGTGTCGCACGGGAACACGGCGCGCCTCGCCAGGGCGCACGGGGACGACGTCCTGGCGCGCACCTGCGGCACCATCGCCGCCGACGAGAAGCGGCACGAGACGGCGTACGGGCGCATCGTGGAGCAGCTGCTGCGGCTCGACCCGGACGGCGCCATGCTCGCCATCGCCGACATGATGCACAAGCGGATCACCATGCCCGCGCACCTCATGCACGACGGCCGCGACATGAACCTGTTCGACCACTTCGCCGCCGTGGCGCAGCGCCTCAACGTCTACACCGCGCGCGACTACGCCGACATCGTCGAGTTCCTCGTCAAGCGGTGGAAGCTGGAGACCCTGGAGACTGGGCTCTCCGGCGAGGGCCGGAGGGCCCGGGACTTCGTGTGCGGGCTCGCGAAGAGGATGCGGCGGGCCGCGGAGCGGGCTGAGGACAGGGCTAAGAAGGATGAGCAGAGGAAGGTCAAGTTCAGCTGGATCTATGATAGGGAAGTGATTGTCTAGTTTAACTTGTCTTGGTTGAATTCTGAATTCCCAGTCCTAGATGATCATGCCATTTCGTTATCATCTCTGTTCTTGTGTTCTCTTTGCAATGCAGTAAATTGGTAATAGTTAATGGTGCT ] [+] EMBL AK120809 [ TCAAGAAACCAACCACCAACTAGCTACTGTAGTTGACTGACAGTGATAGTGGCAGTCATGCAGGTCGTGGGAACCGTGCGTGTCAGTGGCTGCGGC GC GGTGGTGGCGCCCTCGCGCCGGCAGTGCCGCGTGTCCGCGGCG G TGCTGACGGCCGCGGAGACGGCGACGGCGACGCGGCGCCGCGT G ACGCACTCGATGCCGCCGGAGAAGGCGG AGGTGTTCCGGTCGCTGGAAGGGTGGGCGAGGTCGTCGCTGCTGCCGCTGCTCAAGCCCGTGGAGGAGTGCTGGC AGCCGACGGACTTCCTGCCGGAC TCGTCGTCGGAGATGTTCGAGCACCAGGTCCACGAGCTCCGCGCGCGCGCCGCG GGGCT CCCCGA CGAGTACTTCGTCG TGCTGGT CGGGGACATGATTACCGAGGAGGCGCTGCCGACGTACCAGACCATGATCAACACGCTCGACGGCGTCCGCGACGAGACCGGCGCCAGCGCCTGCCCCTGGGCCGTCTGGACGCGCACCTGGACCGCCGAGGAGAACCGCCACGGCGACATCCTCGGCAAGTACATGTACCTCTCCGGCCGCGTCGACATGCGCATGGTCGAGAAGACCGTCCAGTACCTCATCGGCTCCGGCATGGATCCGGGGACGGAGAACAACCCGTACCTGGGGTTCGTGTACACCAGCTTCCAGGAGCGCGCGACGGCCGTGTCGCACGGGAACACGGCGCGCCTCGCCAGGGCGCACGGGGACGACGTCCTGGCGCGCACCTGCGGCACCATCGCCGCCGACGAGAAGCGGCACGAGACGGCGTACGGGCGCATCGTGGAGCAGCTGCTGCGGCTCGACCCGGACGGCGCCATGCTCGCCATCGCCGACATGATGCACAAGCGGATCACCATGCCCGCGCACCTCATGCACGACGGCCGCGACATGAACCTGTTCGACCACTTCGCCGCCGTGGCGCAGCGCCTCAACGTCTACACCGCGCGCGACTACGCCGACATCGTCGAGTTCCTCGTCAAGCGGTGGAAGCTGGAGACCCTGGAGACTGGGCTCTCCGGCGAGGGCCGGAGGGCCCGGGACTTCGTGTGCGGGCTCGCGAAGAGGATGCGGCGGGCCGCGGAGCGGGCTGAGGACAGGGCTAAGAAGGATGAGCAGAGGAAGGTCAAGTTCAGCTGGATCTATGATAGGGAAGTGATTGTCTAGTTTAACTTGTCTTGGTTGAATTCTGAATTCCCAGTCCTAGATGATCATGCCATTTCGTTATCATCTCTGTTCTTGTGTTCTCTTTGCAATGCAGTAAATTGGTAATAGTTAATGGTGCTTTGATCTTGGAAATTTGGCGTTGATGTATTTTCTGGTATCATTAGTGAAGATAGTTTG ] [+] EMBL OS0495A [ AAGAAACCAACCACCAACTAGCTACTGTAGTTGACTGACAGTGATAGTGGCAGTCATGCAGGTCGTGGGAACCGTGCGTGTCAGTGGCTGCGGC GC GGTGGTGGCGCCCTCGCG CGGCAGTGCCGCGTGTCCGC GCG GTTGCTGACGGCCGCGGAGACGGCGACGGCGACGCGGCGCCGCGTGG ACGCACTCGATGCCGCCGGAGAAGGCGG AGGTGTTCCGGTCGCTGGAAGGGTGGGCGAGGTCGTCGCTGCTGCCGCTGCTCAAGCCCGTGGAGGAGTGCTGGC AGCCGACGGACTTCCTGCCGGAC TCGTCGTCGGAGATGTTCG ] [+] EMBL AU173387 [ AAGAAACCAACCACCAACTAGCTACTGTAGTTGACTGACAGTGATAGTGGCAGTCATGCAGGTCGTGGGAACCGTGCGTGTCAGTGGCTGCGGC GCTGGTGGTGGCGCCCTCGCGCCGGCAGTGCCGCGTGTCCGCGGCG G TGCTGACGGCCGCGGAGACGGCGACGGCGACGCGGCGCCGCGT G ACGCACTCGATGCCGCCGGAGAAGGCGG AGGTGTTCCGGTCGCTGGAAGGGTGGGCGAGGTCGTCGCTGCTGCCGCTGCTCAAGCCCGTGGAGGAGTGCTGGC AGCCGACGGACTTCCTGCCGGAC TCGTCGTCGGAGATGTTCGAGCACCAGGTCCACGAGCTCCGCGCGCGCGCCGCG GGGCT CCCCGA CGAGTACTTCGTCG TGCTGGT CGGGGACATGATTACCGAGGAGGCGCTGCCGACGTACCAGACCATGA ] [+] EMBL AU068227 [ AAGAAACCAACCACCAACTAGCTACTGTAGTTGACTGACAGTGATAGTGGCAGTCATGCAGGTCGTGGGAACCGTGCGTGTCAGTGGCTGCGGC GC GGTGGTGGCGCCCTCGCG CGGCANTGNCGCGTGTC CGGCG GNTGCTGACGGNCGCGGAGACGGCGACGGCGACG GGCGCCGCGT G ACGCA ] [+] EMBL AU068010 [ GAAACCAACCACCAACTAGCTACTGTAGTTGACTGACAGTGATAGTGGCAGTCATGCAGGTCGTGGGAACCGTGCGTGTCAGTGGCTGCGGC GC GGTGGTGGCGCCCTCGCGCCGGCAGTGCCGCGTGTCCGCGGCG G TGCTGACGGCCGCGGAGACGGCGACGGCGACGCGGCGCCGCGT G ACGCACTCGATGCCGCCGGAGAAGGCGGCAGGTGTTCCGGTCGCTGGAAGGGTGGGCGANGTCGTCGCTGCTGCCGCTGCTCAAGCCCGTGGAGGAGTGCTGGC AGCCGACGGACTTCNTGCCGGAC TCGTCGTCGGAGATGTTCGAGCACCAGGTCCACGAGCTCCGCGCGCNCGCCGC GGGNT CCCCGA CGAGTA ] [+] EMBL AU062390 [ GAAACCAACCACCAACTAGCTACTGTAGTTGACTGACAGTGATAGTGGCAGTCATGCAGGTCGTGGGAACCGTGCGTGTCAGTGGCTGCGGC GC GGTGGTGGCGCCCTCGCG CGGCAGTGCCGCGTGTCCGC GCG GTTGCTGACGGCCGCGGAGACGGCGACGGCGACGCGGCGCCGCGT G ACGCACTCGATGCCGCCGGAGAAGGCGG AGGTGTTCCGGTCGCTGGAAGGGTGGGCGAGGTCGTCGNTGCTGCCGNTGCTCAAGCCCGTGGAGGAGTGCTGGCAANCCGACGGACTTCCTGCCGGAC TCGTCGTCGGAGATGTT ] [+] EMBL AU062854 [ GAAACCAACCACCAACTAGCTACTGTAGTTGACTGACAGTGATAGTGGCAGTCATGCAGGTCGTGGGAACCGTGCGTGTCAGTGGCTGCGGC GC GGTGGTGGCGCCCTCGCG CGGCAGTGCCGCGTGTCCGC GCGNN TGCTGACGGCCGCGGAGACGGCGACGGCGA CGGCGCCGCGT G ACGCACTCGATGCCGCCGGAGAAGGCGG AGGTGTTCCGGTCGCTGGAAGGGTGGGCGAGGTCGTCGCTGCTGCCGCTGCTCAAGCCCGTGGAGGAGTGCTGGC AGCCGACGGACTTCCTGCCGNAC TCGTCGTCGGAGATGTTCGAGCACCAGNTCCACGAGCTCCG GCGCGCGCCGGGNGGGCTNCCCCGACCGAGTACTTCGTCGTTGTTGGTCCGGGGACATGATTACCGAGAAGGCG TTCCACCGTAACAGACCATTATCAACA ] [+] EMBL AU181619 [ AACCACCAACTAGCTACTGTAGTTGACTGACAGTGATAGTGGCAGTCATGCAGGTCGTGGGAACCGTGCGTGTCAGTGGCTGCGGC GC GGTGGTGGCGCCCTCGCGCCGGCAGTGCCGCGTGTCCGCGGCG G TGCTGACGGCCGCGGAGACGGCGACGGCGACGCGGCGCCGCGT G ACGCACTCGATGCCGCCGGAGAAGGCGG AGGTGTTCCGGTCGCTGGAAGGGTGGGCGAGGTCGTCGCTGCTGCCGCTGCTCAAGCCCGTGGAGGAGTGCTGGC AGCCGACGGACTTCCTGCCGGAC TCGTCGTCGGAGATGTTCGAGCACCAGGTCCACGAGCTCCGCGCGCGCGCCGCG GGGCT CCCCGA CGAGTACTTCGTCG TGCTGGT CGGGGACATGATTACCGAGGAGGCGCTGCCGACGTACCAGA ] [+] EMBL AK059526 [ AACCACCAACTAGCTACTGTAGTTGACTGACAGTGATAGTGGCAGTCATGCAGGTCGTGGGAACCGTGCGTGTCAGTGGCTGCGGC GC GGTGGTGGCGCCCTCGCGCCGGCAGTGCCGCGTGTCCGCGGCG G TGCTGACGGCCGCGGAGACGGCGACGGCGACGCGGCGCCGCGT G ACGCACTCGATGCCGCCGGAGAAGGCGG AGGTGTTCCGGTCGCTGGAAGGGTGGGCGAGGTCGTCGCTGCTGCCGCTGCTCAAGCCCGTGGAGGAGTGCTGGC AGCCGACGGACTTCCTGCCGGAC TCGTCGTCGGAGATGTTCGAGCACCAGGTCCACGAGCTCCGCGCGCGCGCCGCG GGGCT CCCCGA CGAGTACTTCGTCG TGCTGGT CGGGGACATGATTACCGAGGAGGCGCTGCCGACGTACCAGACCATGATCAACACGCTCGACGGCGTCCGCGACGAGACCGGCGCCAGCGCCTGCCCCTGGGCCGTCTGGACGCGCACCTGGACCGCCGAGGAGAACCGCCACGGCGACATCCTCGGCAAGTACATGTACCTCTCCGGCCGCGTCGACATGCGCATGGTCGAGAAGACCGTCCAGTACCTCATCGGCTCCGGCATGGATCCGGGGACGGAGAACAACCCGTACCTGGGGTTCGTGTACACCAGCTTCCAGGAGCGCGCGACGGCCGTGTCGCACGGGAACACGGCGCGCCTCGCCAGGGCGCACGGGGACGACGTCCTGGCGCGCACCTGCGGCACCATCGCCGCCGACGAGAAGCGGCACGAGACGGCGTACGGGCGCATCGTGGAGCAGCTGCTGCGGCTCGACCCGGACGGCGCCATGCTCGCCATCGCCGACATGATGCACAAGCGGATCACCATGCCCGCGCACCTCATGCACGACGGCCGCGACATGAACCTGTTCGACCACTTCGCCGCCGTGGCGCAGCGCCTCAACGTCTACACCGCGCGCGACTACGCCGACATCGTCGAGTTCCTCGTCAAGCGGTGGAAGCTGGAGACCCTGGAGACTGGGCTCTCCGGCGAGGGCCGGAGGGCCCGGGACTTCGTGTGCGGGCTCGCGAAGAGGATGCGGCGGGCCGCGGAGCGGGCTGAGGACAGGGCTAAGAAGGATGAGCAGAGGAAGGTCAAGTTCAGCTGGATCTATGATAGGGAAGTGATTGTCTAGTTTAACTTGTCTTGGTTGAATTCTGAATTCCCAGTCCTAGATGATCATGCCATTTCGTTATCATCTCTGTTCTTGTGTTCTCTTTGCAATGCAGTAAATTGGTAATAGTTA ] [+] EMBL AU181316 [ CCACCAACTAGCTACTGTAGTTGACTGACAGTGATAGTGGCAGTCATGCAGGTCGTGGGAACCGTGCGTGTCAGTGGCTGCGGCAGCAGGTGGTGGCGCCCTCGCGCCGGCAGTGCCGCGTGTCCGCGGCG G TGCTGACGGCCGCGGAGACGGCGACGGCGACGCGGCGCCGCGT G ACGCACTCGATGCCGCCGGAGAAGGCGG AGGTGTTCCGGTCGCTGGAAGGGTGGGCGAGGTCGTCGCTGCTGCCGCTGCTCAAGCCCGTGGAGGAGTGCTGGC AGCCGACGGACTTCCTGCCGGAC TCGTCGTCGGAGATGTTCGAGCACCAGGTCCACGAGCTCCGCGCGCGCGCCGCG GGGCT CCCCGA CGAGTACTTCGTCG TGCTGGT CGGGGACATGATTACCGAGGAGGCGCTGCCGACGTACCAGACCA ] [+] EMBL OSS1883A [ GCTACTGTAGTTGACTGACAGTGATAGTGGCAGTCATGCAGGTCGTGGGAACCGTGCGTGTCAGTGGCTGCGGC GC GGTGGTGGCGCCCTCGCGCGGNCAGTGCCGCGTGTCCGC GCG GNTGCTGACGGCCGCGGAGACGGCGACGGCGACGCGGCGCCGCGT GNACGCACTCGATGCCGCCGGAGAAGGCGG AGGTGTTCCGGTCGCTGGAAGGGTGGGCGAGGTCGTCGCTGCTGCCGCTGCTCAAGCCCGTGGAGGAGTTCTGGC AGCCGACGGACTTNCTGCCGGACTTCGTCGTCGGAGATGTTCGAGCACCAGGTNCACGAGCTTCGCGCGCGC CCG N GGGCT TCCCGA CGAGTA ] [+] EMBL AU197585 [ GTCGTGGGAACCGTGCGTGTCAGTGGCTGCGGC GC GGTGGTGGCGCCCTCGCGCCGGCAGTGCCGCGTGTCCGCGGCG G TGCTGACGGCCGCGGAGACGGCGACGGCGACGCGGCGCCGCGT G ACGCACTCGATGCCGCCGGAGAAGGCGG AGGTGTTCCGGTCGCTGGAAGGGTGGGCGAGGTCGTCGCTGCTGCCGCTGCTCAAGCCCGTGGAGGAGTGCTGGC AGCCGACGGACTTCCTGCCGGAC TCGTCGTCGGAGATGTTCGAGCACCAGGTCCACGAGCTCCGCGCGCGCGCCGCG GGGCT CCCCGA CGAGTACTTCGTCG TGCTGGT CGGGGACATGATTACCGAGGAGGCGCTGCCGACGTACCAGACCATGATCAACACGCTCGACGGCGTCCGCGACGAGACCGGCGCCAGCGCCTGC ] [+] EMBL AU181317 [ TCAAGCGGTGGAAGCTGGAGACCCTGGAGACTGGGCTCTCCGGCGAGGGCCGGAGGGCCCGGGACTTCGTGTGCGGGCTCGCGAAGAGGATGCGGCGGGCCGCGGAGCGGGCTGAGGACAGGGCTAAGAAGGATGAGCAGAGGAAGGTCAAGTTCAGCTGGATCTATGATAGGGAAGTGATTGTCTAGTTTAACTTGTCTTGGTTGAATTCTGAATTCCCAGTCCTAGATGATCATGCCATTTCGTTATCATCTCTGTTCTTGTGTTCTCTTTGCAATGCAGTAAATTGGTAATAGTTAATGGTGCTTTGATCTTGGAAATTTGGCGTTGATGTATTTTCTGGTATCATTAGTGAAGATAGTTTGGTTTCTTTTCACATTTGATGATTTGAACCCTCAAATATTAATGTTGAAATACAGAATTTCNCATTTCAAAAAAA ] [+] EMBL AU173388 [ GGAAGCTGGAGACCCTGGAGACTGGGCTCTCCGGCGAGGGCCGGAGGGCCCGGGACTTCGTGTGCGGGCTCGCGAAGAGGATGCGGCGGGCCGCGGAGCGGGCTGAGGACAGGGCTAAGAAGGATGAGCAGAGGAAGGTCAAGTTCAGCTGGATCTATGATAGGGAAGTGATTGTCTAGTTTAACTTGTCTTGGTTGAATTCTGAATTCCCAGTCCTAGATGATCATGCCATTTCGTTATCATCTCTGTTCTTGTGTTCTCTTTGCAATGCAGTAAATTGGTAATAGTTAATGGTGCTTTGATCTTGGAAATTTGGCGTTGATGTATTTTCTGGTATCATTAGTGAAGATAGTTTGGTTTCTTTTCACATTTGATGATTTGAACCCTCAAATATTAATGTTGAAATACAGAATTTCACATTTCACAAAAAAA] consensusID : consensus_15553#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 366 fasta sequence [CGTNTGCGGGCTCNCGAAGAGGATNCGGCGGGCCCGGAGCGGGCTGAGGACAGGGCTAAGAAGGATGAGCAGAGGAAGGTCAAGTTCAGCTGGATCTATGATAGGGAAGTGATTGTCTAGTTTAACTTGTCTTGGTTGAATTCTGAATTCCCAGTCCTAGATGATCATGCCATTTCGTTATCATCTCTGTTCTTGTGTTCTCTTTGCAATGCAGTAAATTGGTAATAGTTAATGGTGCTTTGATCTTGGAAATTTGGCGTTGATGTATTTTCTGGTATCATTAGTGAAGATAGTTTGGTTTCTTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU097089 [CGTNTGCGGGCTCNCGAAGAGGATNCGGCGGGCCCGGAGCGGGCTGAGGACAGGGCTAAGAAGGATGAGCAGAGGAAGGTCAAGTTCAGCTGGATCTATGATAGGGAAGTGATTGTCTAGTTTAACTTGTCTTGGTTGAATTCTGAATTCCCAGTCCTAGATGATCATGCCATTTCGTTATCATCTCTGTTCTTGTGTTCTCTTTGCAATGCAGTAAATTGGTAATAGTTAATGGTGCTTTGATCTTGGAAATTTGGCGTTGATGTATTTTCTGGTATCATTAGTGAAGATAGTTTGGTTTCTTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_15553#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 320 fasta sequence [CTTCGCCGCCGTGGGCAGGCCNTCAACGTCTACACCGCGCGCGACTACGCCGACATCGTCGAGTTCCTCGTCAAGCGGTGGAAGCTGGAGACCCTGGAGACTTGGGGTCTCCGGCGAGGTCCGTAGGGTCGTGAACTTCGTGTGCGGGCTCGCAAAGAGGATGCGGCGGTTCGCGGAGGCTTGCAGGACAGGGCTAAGAAGGATGAGCAGAGGAAGGTCAAGTTCAGCTGGATCTATGATAGGGAAGTAAGTGGTTAGTTTAACTTGTCTTGGTTGAATTCTGAATTCCCAGTCCTAGGATGATCATGCCATTTGCCTTA] [+] EMBL OSEN265 [CTTCGCCGCCGTGGGCAGGCCNTCAACGTCTACACCGCGCGCGACTACGCCGACATCGTCGAGTTCCTCGTCAAGCGGTGGAAGCTGGAGACCCTGGAGACTTGGGGTCTCCGGCGAGGTCCGTAGGGTCGTGAACTTCGTGTGCGGGCTCGCAAAGAGGATGCGGCGGTTCGCGGAGGCTTGCAGGACAGGGCTAAGAAGGATGAGCAGAGGAAGGTCAAGTTCAGCTGGATCTATGATAGGGAAGTAAGTGGTTAGTTTAACTTGTCTTGGTTGAATTCTGAATTCCCAGTCCTAGGATGATCATGCCATTTGCCTTA] consensusID : consensus_15553#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 266 fasta sequence [GAAACCAACCACCAACTAGCTACTGTAGTTGACTGACAGTGATAGTGGCAGTCATGCAGGTCGTGGGAACCGTGCGTGTCAGTGGCTGCGGCGCGGTGGTGGCGCCCTCGCGCGGTCAGTGCCGCGTGTCCGGCGTNTTGCTGACGNCCGCGNAGACGNCGACGGCGACGGCGNCNCGTTNACGCACTCGATGNCGCGGAGAAGCGTAGGTGTTCCGGTCGTTGAAGGGTGGGCGAGNTCGTCGTTGTGCCGGTGTCAAGCCGTGG] [+] EMBL AU062904 [GAAACCAACCACCAACTAGCTACTGTAGTTGACTGACAGTGATAGTGGCAGTCATGCAGGTCGTGGGAACCGTGCGTGTCAGTGGCTGCGGCGCGGTGGTGGCGCCCTCGCGCGGTCAGTGCCGCGTGTCCGGCGTNTTGCTGACGNCCGCGNAGACGNCGACGGCGACGGCGNCNCGTTNACGCACTCGATGNCGCGGAGAAGCGTAGGTGTTCCGGTCGTTGAAGGGTGGGCGAGNTCGTCGTTGTGCCGGTGTCAAGCCGTGG] consensusID : consensus_15553#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 262 fasta sequence [NCGGAGCGGGCTGAGGNCAGGGCTAAGAAGGATGAGCAGAGGAAGGTCAAGTTCAGCTGGATCTATGATNGGGAAGTGATTGNCTAGTTTAACTTGTCTTGGTTGAATTCTGAATTCCCAGTCCTAGATGATCATGCCATTTCGTTATCNTCTCTGTTCTTGTGTTCTNTTTGCAATGCAGTAAATTGGTAATAGTTNATGGTGCTTTGATCTTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU085716 [NCGGAGCGGGCTGAGGNCAGGGCTAAGAAGGATGAGCAGAGGAAGGTCAAGTTCAGCTGGATCTATGATNGGGAAGTGATTGNCTAGTTTAACTTGTCTTGGTTGAATTCTGAATTCCCAGTCCTAGATGATCATGCCATTTCGTTATCNTCTCTGTTCTTGTGTTCTNTTTGCAATGCAGTAAATTGGTAATAGTTNATGGTGCTTTGATCTTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU031077 [ TGAATTCCCAGTCCTAGATGATCATGCCATTTCGTTATCATCTCTGTTCTTGTGTTCTCTTTGCAATGCAGTAAATTGGTAATAGTTAATGGTGCTTTGATCTTGGAAAAAAAAAAAAA ] consensusID : consensus_15553#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 182 fasta sequence [GTTAACCAGACCATGATCAACACGCTCGACGGCGTCCGCGAGCAGACCGGCCGACGGCTGCCCCTGGGCCGTCTGGACGCGCACCTGGACCACCGAGGAGAACCGGCCAGGGCACATCCTCGGCAAGTACATGTACCTCTCCGGCCGCGCTGCACATGCGCATGGTCGAGAAGACGTCAGTA] [+] EMBL AA750040 [GTTAACCAGACCATGATCAACACGCTCGACGGCGTCCGCGAGCAGACCGGCCGACGGCTGCCCCTGGGCCGTCTGGACGCGCACCTGGACCACCGAGGAGAACCGGCCAGGGCACATCCTCGGCAAGTACATGTACCTCTCCGGCCGCGCTGCACATGCGCATGGTCGAGAAGACGTCAGTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15553#0 ------------------------------------------------------------ consensus_15553#3 ------------------------------------------------------------ consensus_15553#5 ------------------------------------------------------------ consensus_15553#1 ------------------------------------------------------------ consensus_15553#4 ------------------------------------------------------------ consensus_15553#2 CTTCGCCGCCGTGGGCAGGCCNTCAACGTCTACACCGCGCGCGACTACGCCGACATCGTC 60 consensus_15553#0 -----------------------GCCGCTACGCCGCGGCAGCTCGGCGATCCCAGAAAGG 37 consensus_15553#3 ------------------------------------------------------------ consensus_15553#5 ------------------------------------------------------------ consensus_15553#1 ------------------------------------------------------------ consensus_15553#4 ------------------------------------------------------------ consensus_15553#2 GAGTTCCTCGTCAAGCGGTGGAAGCTGGAGACCCTGGAGACTTGGGGTCTCCGGCGAGGT 120 consensus_15553#0 CAGAAGAAATCAAGAAACCAACCACCAACTAGCTACTGTAGTTGACTGACAGTGATAGTG 97 consensus_15553#3 -------------GAAACCAACCACCAACTAGCTACTGTAGTTGACTGACAGTGATAGTG 47 consensus_15553#5 ------------------------------------------------------------ consensus_15553#1 ------------------CGTNTGCGGGCTCNCGAAGAGGATNCGGCGGGCCCGGAGCGG 42 consensus_15553#4 ---------------------------------------------------NCGGAGCGG 9 consensus_15553#2 CCGTAGGGTCGTGAACTTCGTGTGCGGGCTCGCAAAGAGGATGCGGCGG-TTCGCGGAGG 179 consensus_15553#0 GCAGTCATGCAGGTCGTGGGAACCGTGCGT-GTCAGTGGCTGCGG-----CGCGGTGGTG 151 consensus_15553#3 GCAGTCATGCAGGTCGTGGGAACCGTGCGT-GTCAGTGGCTGCGG-----CGCGGTGGTG 101 consensus_15553#5 ---GTTAACCAGACCATGATCAACACGCTC-GACGGCGTCCGCGAGCAGACCGGCCGACG 56 consensus_15553#1 GCTG-AGGACAGGGC-TAAGAAGGATGAGCAGAGGAAGGTCAAGTTCAGCTGGATCTATG 100 consensus_15553#4 GCTG-AGGNCAGGGC-TAAGAAGGATGAGCAGAGGAAGGTCAAGTTCAGCTGGATCTATG 67 consensus_15553#2 CTTGCAGGACAGGGC-TAAGAAGGATGAGCAGAGGAAGGTCAAGTTCAGCTGGATCTATG 238 * *** * * * * * * * * consensus_15553#0 GC--GCCCTCGCGCCGGCAGTGCCGCGTGTCCGCGGC--GGTGCTGACGGCCGCGGAGAC 207 consensus_15553#3 GC--GCCCTCGCGCGGTCAGTGCCGCGTGTCCGGCGT--NTTGCTGACGNCCGCGNAGAC 157 consensus_15553#5 GCT-GCCCCTGGGCCGTCTG-GACGCGCACCTGGACC--ACCGAGGAGAACCGGCCAGGG 112 consensus_15553#1 ATAGGGAAGTGATTGTCTAGTTTAACTTGTCTTGGTTGAATTCTGAATTCCCAGTCCTAG 160 consensus_15553#4 ATNGGGAAGTGATTGNCTAGTTTAACTTGTCTTGGTTGAATTCTGAATTCCCAGTCCTAG 127 consensus_15553#2 ATAGGGAAGTAAGTGGTTAGTTTAACTTGTCTTGGTTGAATTCTGAATTCCCAGTCCTAG 298 * * * * * ** consensus_15553#0 GGCGACGGCGACGCGGCGCCGCGT-GACGCACTCGATGCCGCCGGAGAAGGCGGAGGTGT 266 consensus_15553#3 GNCGACGGCGACG--GCGNCNCGTTNACGCACTCGATGNCGC-GGAGAAG-CGTAGGTGT 213 consensus_15553#5 CACATCCTCGGCA----AGTACATGTACCTCTCCGGCCGCGCTGCACATG-CGCA--TGG 165 consensus_15553#1 -ATGATCATGCCA----TTT-CGTTATCATCTCTGTTCTTGTGTTCTCTTTGCAATGCAG 214 consensus_15553#4 -ATGATCATGCCA----TTT-CGTTATCNTCTCTGTTCTTGTGTTCTNTTTGCAATGCAG 181 consensus_15553#2 GATGATCATGCCA----TTTGCCTTA---------------------------------- 320 * * * * consensus_15553#0 TCCGGTCGCTGGAAGGGTGGGCGAGGTCGTCGCTGCTGCCGCTGCTCAAGCCCGTGGAGG 326 consensus_15553#3 TCCGGTCGTTG-AAGGGTGGGCGAGNTCGTCGTTG-TGCCGGTG-TCAAGCC-GTGG--- 266 consensus_15553#5 TCGAGAAGACGTCAGTA------------------------------------------- 182 consensus_15553#1 TAAATTGGTAATAGTTAATGGTGCTTTGATCTTGGAAATTTGGCGTTGATGTATTTTCTG 274 consensus_15553#4 TAAATTGGTAATAGTTNATGGTGCTTTGATCTTGGAAA---------------------- 219 consensus_15553#2 ------------------------------------------------------------ consensus_15553#0 AGTGCTGGCAGCCGACGGACTTCCTGCCGGACTCGTCGTCGGAGATGTTCGAGCACCAGG 386 consensus_15553#3 ------------------------------------------------------------ consensus_15553#5 ------------------------------------------------------------ consensus_15553#1 GTATCATTAGTGAAGATAGTTTGGTTTCTTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAA 334 consensus_15553#4 ---------------------------------AAAAAAAAAAAAAAAAAAAAAAAAAAA 246 consensus_15553#2 ------------------------------------------------------------ consensus_15553#0 TCCACGAGCTCCGCGCGCGCGCCGCGGGGCTCCCCGACGAGTACTTCGTCGTGCTGGTCG 446 consensus_15553#3 ------------------------------------------------------------ consensus_15553#5 ------------------------------------------------------------ consensus_15553#1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA---------------------------- 366 consensus_15553#4 AAAAAAAAAAAAAAAA-------------------------------------------- 262 consensus_15553#2 ------------------------------------------------------------ consensus_15553#0 GGGACATGATTACCGAGGAGGCGCTGCCGACGTACCAGACCATGATCAACACGCTCGACG 506 consensus_15553#3 ------------------------------------------------------------ consensus_15553#5 ------------------------------------------------------------ consensus_15553#1 ------------------------------------------------------------ consensus_15553#4 ------------------------------------------------------------ consensus_15553#2 ------------------------------------------------------------ consensus_15553#0 GCGTCCGCGACGAGACCGGCGCCAGCGCCTGCCCCTGGGCCGTCTGGACGCGCACCTGGA 566 consensus_15553#3 ------------------------------------------------------------ consensus_15553#5 ------------------------------------------------------------ consensus_15553#1 ------------------------------------------------------------ consensus_15553#4 ------------------------------------------------------------ consensus_15553#2 ------------------------------------------------------------ consensus_15553#0 CCGCCGAGGAGAACCGCCACGGCGACATCCTCGGCAAGTACATGTACCTCTCCGGCCGCG 626 consensus_15553#3 ------------------------------------------------------------ consensus_15553#5 ------------------------------------------------------------ consensus_15553#1 ------------------------------------------------------------ consensus_15553#4 ------------------------------------------------------------ consensus_15553#2 ------------------------------------------------------------ consensus_15553#0 TCGACATGCGCATGGTCGAGAAGACCGTCCAGTACCTCATCGGCTCCGGCATGGATCCGG 686 consensus_15553#3 ------------------------------------------------------------ consensus_15553#5 ------------------------------------------------------------ consensus_15553#1 ------------------------------------------------------------ consensus_15553#4 ------------------------------------------------------------ consensus_15553#2 ------------------------------------------------------------ consensus_15553#0 GGACGGAGAACAACCCGTACCTGGGGTTCGTGTACACCAGCTTCCAGGAGCGCGCGACGG 746 consensus_15553#3 ------------------------------------------------------------ consensus_15553#5 ------------------------------------------------------------ consensus_15553#1 ------------------------------------------------------------ consensus_15553#4 ------------------------------------------------------------ consensus_15553#2 ------------------------------------------------------------ consensus_15553#0 CCGTGTCGCACGGGAACACGGCGCGCCTCGCCAGGGCGCACGGGGACGACGTCCTGGCGC 806 consensus_15553#3 ------------------------------------------------------------ consensus_15553#5 ------------------------------------------------------------ consensus_15553#1 ------------------------------------------------------------ consensus_15553#4 ------------------------------------------------------------ consensus_15553#2 ------------------------------------------------------------ consensus_15553#0 GCACCTGCGGCACCATCGCCGCCGACGAGAAGCGGCACGAGACGGCGTACGGGCGCATCG 866 consensus_15553#3 ------------------------------------------------------------ consensus_15553#5 ------------------------------------------------------------ consensus_15553#1 ------------------------------------------------------------ consensus_15553#4 ------------------------------------------------------------ consensus_15553#2 ------------------------------------------------------------ consensus_15553#0 TGGAGCAGCTGCTGCGGCTCGACCCGGACGGCGCCATGCTCGCCATCGCCGACATGATGC 926 consensus_15553#3 ------------------------------------------------------------ consensus_15553#5 ------------------------------------------------------------ consensus_15553#1 ------------------------------------------------------------ consensus_15553#4 ------------------------------------------------------------ consensus_15553#2 ------------------------------------------------------------ consensus_15553#0 ACAAGCGGATCACCATGCCCGCGCACCTCATGCACGACGGCCGCGACATGAACCTGTTCG 986 consensus_15553#3 ------------------------------------------------------------ consensus_15553#5 ------------------------------------------------------------ consensus_15553#1 ------------------------------------------------------------ consensus_15553#4 ------------------------------------------------------------ consensus_15553#2 ------------------------------------------------------------ consensus_15553#0 ACCACTTCGCCGCCGTGGCGCAGCGCCTCAACGTCTACACCGCGCGCGACTACGCCGACA 1046 consensus_15553#3 ------------------------------------------------------------ consensus_15553#5 ------------------------------------------------------------ consensus_15553#1 ------------------------------------------------------------ consensus_15553#4 ------------------------------------------------------------ consensus_15553#2 ------------------------------------------------------------ consensus_15553#0 TCGTCGAGTTCCTCGTCAAGCGGTGGAAGCTGGAGACCCTGGAGACTGGGCTCTCCGGCG 1106 consensus_15553#3 ------------------------------------------------------------ consensus_15553#5 ------------------------------------------------------------ consensus_15553#1 ------------------------------------------------------------ consensus_15553#4 ------------------------------------------------------------ consensus_15553#2 ------------------------------------------------------------ consensus_15553#0 AGGGCCGGAGGGCCCGGGACTTCGTGTGCGGGCTCGCGAAGAGGATGCGGCGGGCCGCGG 1166 consensus_15553#3 ------------------------------------------------------------ consensus_15553#5 ------------------------------------------------------------ consensus_15553#1 ------------------------------------------------------------ consensus_15553#4 ------------------------------------------------------------ consensus_15553#2 ------------------------------------------------------------ consensus_15553#0 AGCGGGCTGAGGACAGGGCTAAGAAGGATGAGCAGAGGAAGGTCAAGTTCAGCTGGATCT 1226 consensus_15553#3 ------------------------------------------------------------ consensus_15553#5 ------------------------------------------------------------ consensus_15553#1 ------------------------------------------------------------ consensus_15553#4 ------------------------------------------------------------ consensus_15553#2 ------------------------------------------------------------ consensus_15553#0 ATGATAGGGAAGTGATTGTCTAGTTTAACTTGTCTTGGTTGAATTCTGAATTCCCAGTCC 1286 consensus_15553#3 ------------------------------------------------------------ consensus_15553#5 ------------------------------------------------------------ consensus_15553#1 ------------------------------------------------------------ consensus_15553#4 ------------------------------------------------------------ consensus_15553#2 ------------------------------------------------------------ consensus_15553#0 TAGATGATCATGCCATTTCGTTATCATCTCTGTTCTTGTGTTCTCTTTGCAATGCAGTAA 1346 consensus_15553#3 ------------------------------------------------------------ consensus_15553#5 ------------------------------------------------------------ consensus_15553#1 ------------------------------------------------------------ consensus_15553#4 ------------------------------------------------------------ consensus_15553#2 ------------------------------------------------------------ consensus_15553#0 ATTGGTAATAGTTAATGGTGCTTTGATCTTGGAAATTTGGCGTTGATGTATTTTCTGGTA 1406 consensus_15553#3 ------------------------------------------------------------ consensus_15553#5 ------------------------------------------------------------ consensus_15553#1 ------------------------------------------------------------ consensus_15553#4 ------------------------------------------------------------ consensus_15553#2 ------------------------------------------------------------ consensus_15553#0 TCATTAGTGAAGATAGTTTGGTTTCTTTTCACATTTGATGATTTGAACCCTCAAATATTA 1466 consensus_15553#3 ------------------------------------------------------------ consensus_15553#5 ------------------------------------------------------------ consensus_15553#1 ------------------------------------------------------------ consensus_15553#4 ------------------------------------------------------------ consensus_15553#2 ------------------------------------------------------------ consensus_15553#0 ATGTTGAAATACAGAATTTCNCATTTCAAAAAAAAA 1502 consensus_15553#3 ------------------------------------ consensus_15553#5 ------------------------------------ consensus_15553#1 ------------------------------------ consensus_15553#4 ------------------------------------ consensus_15553#2 ------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||