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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15565#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 929 fasta sequence
[CGCGG-TGGAATTCGAAATTCGCCCAAAACCCCCGCGTCGCCCGCGAAAATTTCCCTCCAAAACCTCCGCGCGCTCCTCCCAAACCGACATAAATTCTACAGCGAGGAAGGGGGAGAGAGAGGGAGAGAGAGCGGACGCGAGGCAGCCGAACCACCAACGCGAGCGAGAGAGGGAGAGGGAGAGGAGGAGGAGGAGCAATGGCGGGGAAGGGA-GGGAAGGGGCTGCTCGCGGCGAAGA-CGA-CGGCGGCGAAGGCCGCCGCCGA-CAAGGACAAGGACCGCAAGAAGGCGCCCGTCTCCCGCTCCTCCCGCGCCGGGATCCAGTTCCCGGTGGGGCGTATCCACAGGCAGCTGAAGGGGAGGGTGTCGGCGAACGGCCGCGTGGGGGCGACGGCGGCGGTGTACACGGCGGCGATCCTCGAGTACCTGACGGCGGAGGTCCTGGAGCTCGCCGGCAACGCCAGCAAGGACCTCAAGGTGAAGCGCATCACCCCGCGCCACCTGCAGCTCGCCATCCGCGGGGACGAGGAGCTCGACACCCTCATCAAGGGCACCAT-AGCCGGCGGCGGCGTCATCCCGCACATCCACAAGTCCCTCATCAACAAGACCGCCAAGGAGTAGGAGAGGCAGCGGCGGCTATGTGTTCTTGGAAGTTTTCTATGACCTCTCTGCTAGGGGATTAGTGAGAAAAAAATCCCAGTTATCTTTTCACTAGTAGTCTTAATCATTTAGGACTTGTTGTTATGGTGATTACCTGAATTAGGTGTTCCTGAATCTGTGTAATGGCTGGCTAAACCTTTGGTAATTTGGTGGTAGGGCTGAAGACTTGACTTGCAGCAGCTTGGTGTAGTTGTGATGTGAAACTGCTTATATTTTTCTCTCTGTTGGGTGACTAGCTAATGCTTGGTTGTTACTTGTTGATGACAAAAAAAA]
[+] EMBL AF193345 [CGCGG TGGAATTCGAAATTCGCCCAAAACCCCCGCGTCGCCCGCGAAAATTTCCCTCCAAAACCTCCGCGCGCTCCTCCCAAACCGACATAAATTCTACAGCGAGGAAGGGGGAGAGAGAGGGAGAGAGAGCGGACGCGAGGCAGCCGAACCACCAACGCGAGCGAGAGAGGGAGAGGGAGAGGAGGAGGAGGAGCAATGGCGGGGAAGGGA GGGAAGGGGCTGCTCGCGGCGAAGA CGA CGGCGGCGAAGGCCGCCGCCGA CAAGGACAAGGACCGCAAGAAGGCGCCCCTCTCCCCCTCCTCCCGCGCCGGGATCCAGTTCCCGGTGGGGCGTATCCACAGGCAGCTGAAGGGGAGGGTGTCGGCGAACGGCCCCGTGGGGGCGACGGCGGCGGTGTACACGGCGGCGATCCTCGAGTACCTGACGGGGGAGGTCCTGGAGCTCGCCGGCAACGCCAGCAAGGACCTCAAGGTGAAGCGCATCACCCCGCGCCACCTGCAGCTCGCCATCCGCGGGGACGAGGAGCTCGACACCCTCATCAAGGGCACCAT AGCCGGCGGCGGCGTCATCCCGCACATCCACAAGTCCCTCATCAACAAGACCGCCAAGGAGTAGGAGAGGCAGCGGCGGCTATGTGTTCTTGGAAGTTTTCTATGACCTCTCTGCTAGGGGATTAGTGAGAAAAAAATCCCAGTTATCTTTTCACTAGTAGTCTTAATCATTTAGGACTTGTTGTTATGGTGATTACCTGAATTAGGTGTTCCTGAATCTGTGTAATGGCTGGCTAAACCTTTGGTAATTTGGTGGTAGGGCTGAAGACTTGACTTGCAGCAGCTTGGTGTAGTTGTGATGTGAAACTGCTTATATTTTTCTCTCTGTTGGGTGACTAGCTAATGCTTGGTTGTTACTTGTTGATGACAAAAAAAA]
[+] EMBL AU063060 [ CGG TGGAATTCGAAATTCGCCCAAAACCCCCGCGTCGCCCGCNAAAATTTCCCTCCAAAACCTCCGCGCGCTCCTCCCAAACCGACATAAATTCTACAGCGAGGAAGGGGGAGAGAGAGGGAGAGAGAGCGGACGCGNGGCAGCCGAACCACCAACGCGAGCNAGANAGGGAGAGGGAGAGGAGGAGGAGGAGCAATNGCGGGGAAGGGA GGGAAGGGGATGCTCGCGGCGAAGA GACCGGCGGCGAAG ]
[+] EMBL AU063061 [ CGGTTGGAATTCGAAATTCGCCCAAAACCCCCGCGTCGCCCGCGAAAATTTCCCTCCAAAACCTCCGCGCGCTCCTCCCAAACCGACATAAATTCTACAGCGAGGAAGGGGGAGAGAGAGGGAGAGAGANCGGACGCGTGGCAGCCGAACCACCAACGCGAGCNAGAGAGGGAGAGGGAGAGGAGGAGGAGGAGCAATGGCGGGGAAGGGA GGGAAGGNGATGCT ]
[+] EMBL AK121515 [ GAGAGAGCGGACGCGAGGCAGCCGAACCACCAACGCGAGCGAGAGAGGGAGAGGGAGAGGAGGAGGAGGAGCAATGGCGGGGAAGGGA GGGAAGGGGCTGCTCGCGGCGAAGA CGA CGGCGGCGAAGGCCGCCGCCGA CAAGGACAAGGACCGCAAGAAGGCGCCCGTCTCCCGCTCCTCCCGCGCCGGGATCCAGTTCCCGGTGGGGCGTATCCACAGGCAGCTGAAGGGGAGGGTGTCGGCGAACGGCCGCGTGGGGGCGACGGCGGCGGTGTACACGGCGGCGATCCTCGAGTACCTGACGGCGGAGGTCCTGGAGCTCGCCGGCAACGCCAGCAAGGACCTCAAGGTGAAGCGCATCACCCCGCGCCACCTGCAGCTCGCCATCCGCGGGGACGAGGAGCTCGACACCCTAATCAAGGGCACCAT AGCCGGCGGCGGCGTCATCCCGCACATCCACAAGTCCCTCATCAACAAGACCGCCAAGGAGTAGGAGAGGCAGCGGCGGCTATGTGTTCTTGGAAGTTTTCTATGACCTCTCTGCTAGGGGATTAGTGAGAAAAAAATCCCAGTTATCTTTTCACTAGTAGTCTTAATCATTTAGGACTTGTTGTTATGGTGATTACCTGAATTAGGTGTTCCTGAATCTGTGTAATGGCTGGCTAAACCTTTGGTAATTTGGTGGTAGGGCTGAAGACTTGACTTGCAGCAGCTTGGTGTAGTTGTGATGTGAAACTGCTTATATTTTTCTCTCTGTTGGGTGACTAGCTAATGCTTGGTTGTTA ]
[+] EMBL C72672 [ GAACCACCAACGCGAGCGAGAGAGGGAGAGGGAGAGGAGGAGGAGGAGCAATGGCGGGGAAGGGA GGGAAGGGGCTGCTCGCGGCGAAGA CGA CGGCGGCGAAGGCC CC ACGANCAAGGACAAGGACCGCAAGAAGGCGCCCGTCTCCCGCTCCTCCCGCGCCGGGATCCAGTTCCCGGTGGGGCGTATCCACAGGCAGCTGAAGGGGAGGGTGTCGGCGAACGGCCGCGTGGGGGCGACGGCGGCGGTGTACACGGCGGCGATCCTCGAGTACCTGACGGCGGAGGTCCTGGAGCTCGCCGGCAACGCCAGCAAGGACCTCAAGGTGAAGCGCATCANCCCGCGCCAACTGCAGCTCGCCATCCGCGGGGACGAGGAGCTCGACAACCTCATCAAGGGCACCATAAGCCGGCGGGGGCGTCATTCCGC ]
[+] EMBL AU081547 [ GAAGGGANGGAAAGGGGCTGCTCGCGGCGAAGACCGA CGGCGGCGAAGNCCGCCGCCGA CAAGGACAAGGACCGCAAGAAGGCGCCCGTCTCCCGCTCCTCCCGCGCCGGGATCCAGTTCCCGGTGGGGCGTATCCACAGGCAGCTGAAGGGGAGGGTGTCGGCGAACGGCCGCGTGGGGGCGACGGCGGCGGTGTACACGGCGGCGATCCTCGAGTACCTGACGGCGGAGGTCCTGGAGCTCGCCGGCAACGCCAGCAAGGACCTCAAGGTGAAGCGCATCACCCCGCGCCACCTGCAGCTCGCCATCCGCGGGGACGAGGAGCTCGACACCCTCATCAAGGGCACCAT AGCCGGCGGCGGCGTCATCCCGCACATCCACAAGTCCCTCATCAACAAGACCGCCAAGGAGTAGGAGAGGCAGCGGCGGCTATGTGTTCTTGGAAGTTTTCTATGACCTCTCTGCTAGGGGATTAGTGAGAAAAAAATCCCAGTTATCTTTTCACTAGTAGTCTTAATCATTTAGGACTTGTTGTTATGGTGATTACCTGAATTAGGTGTTCCTGAATCTGTGTAATGGCTGGCTAAACCTTTGGTAATTTGGTGGTAGGGCTGAAGACTTGACTTGCAGCAGCTTGGTGTAGTTGTGATGTGAAAaaaaaaa ]
[+] EMBL AU101158 [ GGCAGCTGAAGGGGAGGGTGTCGGCGAACGGCCGCGTGGGGGCGACGGCGGCGGTGTACACGGCGGCGATCCTCGAGTA CTGACGGCGGAGGTCCTGGAGCTCGCCGGCAACGCCAGCAAGGACCTCAAGGTGAAGCGCATCACCCCGCGCCACCTGCAGCTCGCCATCCGCGGGGACGAGGAGCTCGACACCCTCATCAAGGGCACCAT AGCCGGCGGCGGCGTCATCCCGCACATCCACAAGTCCCTCATCAACAAGACCGCCAAGGAGTAGGAGAGGCAGCGGCGGCTATGTGTTCTTGGAAGTTTTCTATGACCTCTCTGCTAGGGGATTAGTGAGAAAAAAATCCCAGTTATCTTTTCACTAGTAGTCTTAATCATTTAGGACTTGTTGTTATGGTGATTACCTGAATTAGGTGTTCCTGAATCTGTGTAATGGCTGGCTAAACCTTTGGTAATTTGGTGGTAaaaaaaaaa ]
[+] EMBL AA751996 [ cacgagATCA CCCGCGCCACCTGCAGCTCGCCATCCGCGGGGACGANGANCTCGACACCCTCATCAAGGGNACCAT ANCCGGCGGNGGGGTCATCCCGCACATCCACAAGTCCCTCATCAACAAGACCGCCCAGGAGTNTGANAAGCA CGGCGGCTATGTGTTCTTGGAANTTTTCTATGACTTCTCTGCTAGGGGATTAGTGAGAAAAAAATCCCNNTTATCTTTTCACTAGTAGTCTTAATCATTTANGACTTGTTGTTATGGTGATTACCTNAATTANGTGTTCCNGAATCTGTGTAATGGCTGGCTAAACCTTTGGTAATTTGGTGGCAGGGCTGAA ACTTGACTTGCAGCANCTTGGTGTAGTTGTGATNTGAAACTGCTTATATTTT ]
[-] EMBL D43145 [ GGCTATGTGTTCTTGGAAGTTTTCTATGACCTCTCTGCTAGGGGATTAGTGAGAAAAAAANCCCAGTTANCTTTTCACTAGTAGTCTTAATCATTTAGGACTTGTTGTTATGGTGATTACCTGAATTAGGTGTNCCTGAATCTGTGTAATGGCTGGCTAAACCTTTGGTAATTTGGTGGTAGGGCTGAAGACTTGACTTGCAGCAGCTTGGTGTAGTTGTGATGTGAAACTGCTTATAT ]
consensusID : consensus_15565#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 798 fasta sequence
[GTGAGTTTGAACAGAACAACGCGACGACCCTTGCAGCGCACGACCCCGCGGACTCGATCCAGATCTAGGGCTTCTCGTCGGCGGCGATGGCGGGCAAGGGAGGCAAGGGGCTCCTCGCGGCCAAGACCACGGCGGCAAAGAGCGCCGACAAGGACAAGGACAAGAAGAAGGCCCCCGTCTCCCGCTCCTCCCGCGCCGGCCTCCAGTTCCCGGTGGGGCGTATCCACAGGCAGCTCAAGTCGAGGGCGTCGGCTCATGGCCGCGTCGGCGCCACCGCCGCCGTGTAC-TCCGCGGCGATTCTCGAGTACCTAACCGCCGAGGTCC-TGGAGCTGGCCGGCAACGCGAGCAAGGA-TC-TCAAGGTGAAGCGTA-TCACCCC-GCGCCATCTCCA-GCTAGCCATCCGC-GGGGATGAGGAGCTCGACACGCTCATCAAGGGCACCATCGCCGGCGGTGGCGTCATCCCCCATATCCACAAGTCGCTCATCAACAAGACCTCCAAAGAGTGATGCGAAAAAAAAAAAACTCCCTCATGTGCTTTGCTTGACTCGAAGTTTGGTGGGTGTTTTACTGTTAATTTGTTATGTTTTCTCATTTGATTTGATGTATTTGTGCTACAGTGTTCAATCCTTAGTGGGTTTAGGTGCCTTTTAGTCTTTTGAAATTATCGTGACAATGTTGGTTGCAGCTGAATTCTTGTGAATTCTTCACTCCGTATGCTGTTCTGAACCATCCATCTCGATGCTTCAGTTCAGATTATCTTGTTAATGTTTAAGATCAGTTCGATTGATTGGCATGTGCCCA]
[+] EMBL AK121533 [GTGAGTTTGAACAGAACAACGCGACGACCCTTGCAGCGCACGACCCCGCGGACTCGATCCAGATCTAGGGCTTCTCGTCGGCGGCGATGGCGGGCAAGGGAGGCAAGGGGCTCCTCGCGGCCAAGACCACGGCGGCAAAGAGCGCCGACAAGGACAAGGACAAGAAGAAGGCCCCCGTCTCCCGCTCCTCCCGCGCCGGCCTCCAGTTCCCGGTGGGGCGTATCCACAGGCAGCTCAAGTCGAGGGCGTCGGCTCATGGCCGCGTCGGCGCCACCGCCGCCGTGTAC TCCGCGGCGATTCTCGAGTACCTAACCGCCGAGGTCC TGGAGCTGGCCGGCAACGCGAGCAAGGA TC TCAAGGTGAAGCGTA TCACCCC GCGCCATCTCCA GCTAGCCATCCGC GGGGATGAGGAGCTCGACACGCTCATCAAGGGCACCATCGCCGGCGGTGGCGTCATCCCCCATATCCACAAGTCGCTCATCAACAAGACCTCCAAAGAGTGATGCGAAAAAAAAAAAACTCCCTCATGTGCTTTGCTTGACTCGAAGTTTGGTGGGTGTTTTACTGTTAATTTGTTATGTTTTCTCATTTGATTTGATGTATTTGTGCTACAGTGTTCAATCCTTAGTGGGTTTAGGTGCCTTTTAGTCTTTTGAAATTATCGTGACAATGTTGGTTGCAGCTGAATTCTTGTGAATTCTTCACTCCGTATGCTGTTCTGAACCATCCATCTCGATGCTTCAGTTCAGATTATCTTGTTAATGTTTAAGATCAGTTCGATTGATTGGCATGTGCCCA]
[+] EMBL AK061605 [ TTTGAACAGAACAACGCGACGACCCTTGCAGCGCACGACCCCGCGGACTCGATCCAGATCTAGGGCTTCTCGTCGGCGGCGATGGCGGGCAAGGGAGGCAAGGGGCTCCTCGCGGCCAAGACCACGGCGGCAAAGAGCGCCGACAAGGACAAGGACAAGAAGAAGGCCCCCGTCTCCCGCTCCTCCCGCGCCGGCCTCCAGTTCCCGGTGGGGCGTATCCACAGGCAGCTCAAGTCGAGGGCGTCGGCTCATGGCCGCGTCGGCGCCACCGCCGCCGTGTAC TCCGCGGCGATTCTCGAGTACCTAACCGCCGAGGTCC TGGAGCTGGCCGGCAACGCGAGCAAGGA TC TCAAGGTGAAGCGTA TCACCCC GCGCCATCTCCA GCTAGCCATCCGC GGGGATGAGGAGCTCGACACGCTCATCAAGGGCACCATCGCCGGCGGTGGCGTCATCCCCCATATCCACAAGTCGCTCATCAACAAGACCTCCAAAGAGTGATGCG AAAAAAAAAAACTCCCTCATGTGCTTTGCTTGACTCGAAGTTTGGTGGGTGTTTTACTGTTAATTTGTTATGTTTTCTCATTTGATTTGATGTATTTGTGCTACAGTGTTCAATCCTTAGTGGGTTTAGGTGCCTTTTAGTCTTTTGAAATTATCGTGACAATGTTGGTTGCAGCTGAATTCTTGTGAATTCTTCACTCCGTATGCTGTTCTGAACCATCCATCTCGATGCTTCAGTTCAGATTATCTTGTTAATGTTTAAGAT ]
[+] EMBL AU031462 [ CGCGACGACCCTTGCAGCGCACGACCCCGCGGACTCGATCCAGATCTAGGGCTTCTCGTCGGCGGCGATGGCGGGCAAGGGAGGCAAGGGGCTCCTCGCGGCCAAGACCACGGCGGCAAAGAGCGCCGACAAGGACAAGGACAAGAAGAAGGCCCCCGTCTCCCGCTCCTCCCGCGCCGGCCTCCAGTTCCCGGTGGGGCGTATCCACAGGCAGCTCAAGTCGAGGGCGTCGGCTCATGGCCGCGTCGGCGCCACCGCCGCCGTGTAC TCCGCGGCGATTCTCGAGTACCTAACCGCCGAGGTCC TGGAGCTGGCCGGCAACGCGAGCAAGGA TC TCAAGGTGAAGCGTA TCACCCC GCGCCATCTCCA GCTAGCCATCCGCGGGGGATGAGGAGCTCGACACGC ]
[+] EMBL C73977 [ CCCTTGCAGCGCACGACCCCGCGGACTCGATCCAGATCTAGGGCTTCTCGTCGGCGGCGATGGNGGGCAAGGGAGGCAAGGGGNTCCTCGCGGCCAAGACCACGGCGGCAAAGAGCGCCGACAAGGACAAGGACAAGAAGAAGGNCCCCGTCTCCCGNTCCTCCCGNGCCGGNCTCCAGTT ]
[+] EMBL OS1321777 [ TTGCAGCGCACGACCCCGCGGACTCGATCCANATCTAGGGCTTCTCGTCGGCGGCGATGGCGGGCAAGGGAGGCAAGGGGCTCCTCGCGGCCAAGACCACGGCGGCAAAGAGCGCCGACAAGGACAAGGACAAGAAGAAGGCCCCCGTCTCCCGCTCCTCCCGCGNCGGCCTCCAGTTCCCGGTGGGGCGTATCCACAGGCAGCTCAAGTCGAGGGCGTCGGCTCATGGCCGCGTCGGCGCCACCGCCGNCGTGTACTTCCGCGGCGATTCTCGAGTANCTAACCGCCGAGGTCCTTGGAGTTGGCCGG AACGNGAGAAAAGATTCTTAAAGGTTAAGCGTATTAACCCCGGGGCAATTTTCANTTTAGCCATtc ]
[+] EMBL OS1321776 [ TGCAGCGCACGACCCCGCGGACTCGATCCAGATCTAGGGCTTCTCGTCGGCGGCGATGGCGGGCAAGGGAGGCAAGGGGCTCCTNGCGGCCAAGACCACGGCGGCAAAGAGCGCCGACAAGGACAAGGACAAGAAGAAGGCCCCCGTCTCCCGNTCCTCCCGCGCCGGCCTCCAGTTCCCGGTGGGGCGTATCCACAGGCAGCTCAAGTCGAGGGCGTCGGNTCATGTCCGCGTCGGCGNCA ]
[+] EMBL AU101555 [ GTCGGCTCATGGCCGCGTCGGCGCCACCGCCGCCGTGTAC TCCGCGGCGATTCTCGAGTACCTAACCGCCGAGGTCC TGGAGCTGGCCGGCAACGCGAGCAAGGA TC TCAAGGTGAAGCGTA TCACCCC GCGCCATCTCCA GCTAGCCATCCGC GGGGATGAGGAGCTCGACACGCTCATCAAGGGCACCATCGCCGGCGGTGGCGTCATCCCCCATATCCACAAGTCGCTCATCAACAAGACCTCCAAAGAGTGATGCGAAAAAAAAAAAACTCCCTCATGTGCTTTGCTTGACTCGAAGTTTGGTGGGTGTTTTACTGTTAATTTGTTATGTTTTCTCATTTGATTTGATGTATTTGTGCTACAGTGTTCAATCCTTAGTGGGTTTAGGTGCCTTTTAGTCTTTTGAAATTATCGTGACAATGTTGGTTGCAGCTGAAaaaa ]
[+] EMBL CA998130 [ CGTGTAC TCCGCGGCGATTCTCGAGTACCTAACCGCCGAGGTCC TGGAGCTGGCCGGCAACGCGAGCAAGGA TC TCAAGGTGAAGCGTA TCACCCC GCGCCATCTCCA GCTAGCCATCCGC GGGGATGAGGAGCTCGACACGCTCATCAAGGGCACCATCGCCGGCGGTGGCGTCATCCCCCATATCCACAAGTCGCTCATCAACAAGACCTCCAAAGAGTGATGCGAAAAAAAAAAAACTCCCTCATGTGC ]
[+] EMBL AU223327 [ CCATCCGC GGGGATGAGGAGCTNGACACGCTCATCAAGGGCACCATNGCCGGCGGTGGNGTCATCCCCCATATCCACAAGTCGCTCATCAACAAGACCTCCAAAGAGTNATNCGAAAAAAAAAAAACTCCCTCATGTGCTTTGCTTGACTCGAAGTTTGGTGGGTGTTTTACTGTTAATTTGTTATGTTTTCTCATTTGATTTGATGTATTTGTGCTACAGTGTTCAATCCTTAGTGGGTTTAGGTGCCTTTTAGTCTTTTGAAATTATCGTGACAATGTTGGTTGCAGCTGAAaaaaaaa ]
consensusID : consensus_15565#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 723 fasta sequence
[GGGGGCCAAAGGGTCTCCCTCGTCTGGTCCCCAAGNTCCTTCTGCTGGCCAAAGAGCCTCTCTGATCCAATGGGACCAGGGACAAGAAGGAAGGCCCCCGTCTCCCGCTCCTCACCGCAGCCGGGCCTCCAGTTCCCGTTGGGGCGTATCCACAGGCAGCTCAAGTCGAGGGCGTCGGCTCATGCCGCGTCGGCGCCACCGCCGCC-GTGTACTCCGCGGCGATTCTCGAGTACCTAACCG-CCGAGGTCCTGGAGCTGGCCGGCAACGCGAG-CAAGGATCTCAAGGTGAAGCGTATCACCCCGCGCCATCTCCAGCTAGCCATCCGCGGGGATGAGGAGCTCGACACGCTCATCAAGGGCACCATCGCCGGC-GGTGGCGTCATCCCCCCATATCCACAAGTCGCTCATCAACAAGACCTCC-AAGAGTGATGCG-AAAAAAAAAAAACTCCCTCATGTGCTTTGCTTGACTCGAAGTTTGGTGGGTGTTTTACTGTTAATTTGTTATGTTTTCTCATTTGATTTGATGTATTTGTGCTACAGTGTTCAATCCTTAGTGGGTTTAGGTGCCTTTTAGTCTTTTGAAATTATCGTGACAATGTTGGTTGCAGCTGAATTCTTGTGAATTCTTCACTCCGTATGCTGTTCTGAACCATCCATCTCGATGCTTCAGTTCAGATTATCTTGTTAATGTTTAAGATCAGTTCGATTGAAAAAAAAAAAAAAA]
[+] EMBL BI805603 [GGGGGCCAAAGGGTCTCCCTCGTCTGGTCCCCAAGNTCCTTCTGCTGGCCAAAGAGCCTCTCTGATCCAATGGGACCAGGGACAAGAAGGAAGGCCCCCGTCTCCCGCTCCTCACCGCAGCCGGGCCTCCAGTTCCCGTTGGGGCGTATCCACAGGCAGCTCAAGTCGAGGGCGTCGGCTCATGCCGCGTCGGCGCCACCGCCGCCAGTGTACTCCGCGGCGATTCTCGAGTACCTAACCGTCCGAGGTCCTGGAGCTGGCCGGCAACGCGAGTCAAGGATCTCAAGGTGAAGCGTATCACCCCGCGCCATCTCCAGCTAGCCATCCGCGGGGATGAGGAGCTCGACACGCTCATCAAGGGCACCATCGCCGGC GGTGGCGTCAT CCCCCATATCCACAAGTCGCTCATCAACAAGACCTCC AAGAGTGATGCGAAAAAAAAAAAAACTCCCTCATGTGCTTTGCTTGACTCGAAGTTTGGTGGGTGTTTTACTGTTAATTTGTTATGTTTTCTCATTTGATTTGATGTATTTGTGCTACAGTGTTCAATCCTTAGTGGGTTTAGGTGCCTTTTAGTCTTTAGAAATTATCGTGAC ATGTTGGTTGCAGCTGAATTCTTGTGAATTCTTCACTCCGTATGCTGTTCTGAACCATCCATCTCGATGCTTCAGTTCAGATTATCTTGTTAATGTTTAAGATCAGTTCGATTAAAAAAA ]
[+] EMBL CA998166 [ C GTGTACTCCGCGGCGATTCTCGAGTACCTAACCG CCGAGGTCCTGGAGCTGGCCGGCAACGCGAG CAAGGATCTCAAGGTGAAGCGTATCACCCCGCGCCATCTCCAGCTAGCCATCCGCGGGGATGAGGAGCTCGACACGCTCATCAAGGGCACCATCGCCGGCGGGGGGCGTCATCCCCCCATATCCACAAGTCGCTCATCAACAAGACCTCCAAAGAGTGATGCG AAAAAAAAAAAACTCCCTCATGTGCTTTGCTTGACTCGAAGTTTGGTGGGTGTTTTACTGTTAATTTGTTATGTTTTCTCATTTGATTTGATGTATTTGTGCTACAGTGTTCAATCCTTAGTGGGTTTAGGTGCCTTTTAGTCTTTTGAAATTATCGTGACAATGTTGGTTGCAGCTGAATTCTTGTGAATTCTTCACTCCGTATGCTGTTCTGAACCATCCATCTCGATGCTTCAGTTCAGATTATCTTGTTAATGTTTAAGATCAGTTCGATTGAAAAAAAAAAAAAAA]
[+] EMBL CA998127 [ C GTGTACTCCGCGGCGATTCTCGAGTACCTAACCG CCGAGGTCCTGGAGCTGGCCGGCAACGCGAG CAAGGATCTCAAGGTGAAGCGTATCACCCCGCGCCATCTCCAGCTAGCCATCCGCGGGGATGAGGAGCTCGACACGCTCATCAAGGGCACCATCGCCGGC GGTGGCGTCATCCCCCCATAT CACAAGTCGCTCATCAAC AGACCTCC AAGAGTGATGCG AAAAAAAAAAACTCCCTCATGTGCTTTGCTTGACTCGAAGTTTGGTGGGTGTTTTACTGTTAATTTGTTATGTTTTCTCATTTGATTTGATGTATTTGTGCTACAGTGTTCAATCCTTAGTGGGTTTAGGTGCCTTTTAGTCTTTTGAAATTATCGTGACAATGTTGGTTGCAGCTGAATTCTTGTGAATTCTTCACTCCGTATGCTGTTCTGAACCATCCATCTCGATGCTTCANGTCAGATTATCTTGTTAATGTTTAAGATCAGTTCGATTGAAAAAAAAAAAAAA ]
[+] EMBL AU162354 [ GTGGGTGTTTTACTGTAAATTTGTTATGTTTTCTCATTTGATTTGANGTATTTGTGCTACNGTGTTCAANCCTTAGTGGGTTTAGGTGCCTTTTAGTCTTTTGAAATTATCGTGANAATGTTGGTTGCNGCTGAATTCTTGTGAATTCTTCACTCCGTATGCTGTTCTGAACCATCCATCTCGATGCTTCNGTTCAGATTATCTTGTTNATGTTTNAGATCNGTTCGNTTGAAAAAAA ]
consensusID : consensus_15565#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 323 fasta sequence
[GAGCGAGAGAGGGAGAGGGAGAGGAGGAGNAGGAGCAATGGCGGGGAAGGGAGGGAAGGGGCTGCTCGCGGCGAAGACGACGGCGNCGAAGGCCCGNCGATCAAGGACAAGGACCGCAAGAAGGCGCCCNTCTCCCGCTCCTCCCGCGCCGGGATCCAGTTCCCGGTGGGGCGTATCCACAGGCAGCTGAAGGGGAGGGTNTCGNCGAACGGCCCCTGTGGGGGCGACGGCGNCGTCTGTACACGNNGGNGATCNTCGAGTACCTNACGGCGAAGNTCCTNGNAGGNTCGTCGGNAACGGCANGCAAGNGACCTNAANGATGA]
[+] EMBL OS1633A [GAGCGAGAGAGGGAGAGGGAGAGGAGGAGNAGGAGCAATGGCGGGGAAGGGAGGGAAGGGGCTGCTCGCGGCGAAGACGACGGCGNCGAAGGCCCGNCGATCAAGGACAAGGACCGCAAGAAGGCGCCCNTCTCCCGCTCCTCCCGCGCCGGGATCCAGTTCCCGGTGGGGCGTATCCACAGGCAGCTGAAGGGGAGGGTNTCGNCGAACGGCCCCTGTGGGGGCGACGGCGNCGTCTGTACACGNNGGNGATCNTCGAGTACCTNACGGCGAAGNTCCTNGNAGGNTCGTCGGNAACGGCANGCAAGNGACCTNAANGATGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15565#0 CGCGGTGGAATTCGAAATTCGCCCAAAACCCCCGCGTCGCCCGCGAAAATTTCCCTCCAA 60
consensus_15565#3 ------------------------------------------------------------
consensus_15565#1 ------------------------------------------------------------
consensus_15565#2 ------------------------------------------------------------
consensus_15565#0 AACCTCCGCGCGCTCCTCCCAAACCGACATAAATTCTACAGCGAGGAAGGGGGAGAGAGA 120
consensus_15565#3 ------------------------------------------------------------
consensus_15565#1 ---------------------------------------------------GTGAGTTTG 9
consensus_15565#2 ------------------------------------------------------------
consensus_15565#0 GGGAGAGAGAGCGGACGCGAGGCAGCCGAACCACCAACGCGAGCGAGAGAGGGAGAGGGA 180
consensus_15565#3 ----------------------------------------GAGCGAGAGAGGGAGAGGGA 20
consensus_15565#1 AACAGAACAACGCGACGACCCTTGCAGCGCACGACCCCGCGGACTCGATCCAGATCTAGG 69
consensus_15565#2 ------------------------------------------------------------
consensus_15565#0 GAGGAGGAGGAGGAGCAATGGCGGGGAAGGGAGGGAAGGGGCTGCTCGCGGCGAAGACGA 240
consensus_15565#3 GAGGAGGAGNAGGAGCAATGGCGGGGAAGGGAGGGAAGGGGCTGCTCGCGGCGAAGACGA 80
consensus_15565#1 GCTTCTCGTCGGCGGCGATGGCGGGCAAGGGAGGCAAGGGGCTCCTCGCGGCCAAGACCA 129
consensus_15565#2 ---GGGGGCCAAAGGGTCTCCCTCGTCTGGTCCCCAAGNTCCTTCTGCTGGCCAAAG--- 54
* * * * ** *** ** ** *** **
consensus_15565#0 CGGCGGCGAAGGCCGCCGCCGA-CAAGGACAAGGACCGCAAG-AAGGCGCCCGTCTCCCG 298
consensus_15565#3 CGGCGNCGAAGGC--CCGNCGATCAAGGACAAGGACCGCAAG-AAGGCGCCCNTCTCCCG 137
consensus_15565#1 CGGCGGCAAAGAG---CGCCGA-CAAGGACAAGGACAAGAAG-AAGGCCCCCGTCTCCCG 184
consensus_15565#2 -AGCCTCTCTGAT---C--CAA-TGGGACCAGGGACAAGAAGGAAGGCCCCCGTCTCCCG 107
** * * * * * * ** **** *** ***** *** *******
consensus_15565#0 CTCCTC-CCGCGCC--GGGATCCAGTTCCCGGTGGGGCGTATCCACAGGCAGCTGAAGGG 355
consensus_15565#3 CTCCTC-CCGCGCC--GGGATCCAGTTCCCGGTGGGGCGTATCCACAGGCAGCTGAAGGG 194
consensus_15565#1 CTCCTC-CCGCGCC--GGCCTCCAGTTCCCGGTGGGGCGTATCCACAGGCAGCTCAAGTC 241
consensus_15565#2 CTCCTCACCGCAGCCGGGCCTCCAGTTCCCGTTGGGGCGTATCCACAGGCAGCTCAAGTC 167
****** **** * ** *********** ********************** ***
consensus_15565#0 GAGGGTGTCGGCGAACGGCCGC-GTGGGGGCGACGGCGGCGG-TGTACACGGCGGCGATC 413
consensus_15565#3 GAGGGTNTCGNCGAACGGCCCCTGTGGGGGCGACGGCGNCGTCTGTACACGNNGGNGATC 254
consensus_15565#1 GAGGGCGTCGGCTCATGGCCGC-GTCGGCGCCACCGCCGCCG-TGTACTCCGCGGCGATT 299
consensus_15565#2 GAGGGCGTCGGCTCATG-CCGC-GTCGGCGCCACCGCCGCCG-TGTACTCCGCGGCGATT 224
***** *** * * * ** * ** ** ** ** ** * ***** * ** ***
consensus_15565#0 CTCGAGTACCTGACGGCGGAGGTCCTGGA--GCTCGCCGGCAACGCCAGC--AAGGACCT 469
consensus_15565#3 NTCGAGTACCTNACGGCGAAGNTCCTNGNAGGNTCGTCGGNAACGGCANGCAAGNGACCT 314
consensus_15565#1 CTCGAGTACCTAACCGCCGAGGTCCTGGA--GCTGGCCGGCAACGCGAGC--AAGGATCT 355
consensus_15565#2 CTCGAGTACCTAACCGCCGAGGTCCTGGA--GCTGGCCGGCAACGCGAGC--AAGGATCT 280
********** ** ** ** **** * * * * *** **** * * ** **
consensus_15565#0 CAAGGTGAAGCGCATCACCCCGCGCCACCTGCAGCTCGCCATCCGCGGGGACGAGGAGCT 529
consensus_15565#3 NAANGATGA--------------------------------------------------- 323
consensus_15565#1 CAAGGTGAAGCGTATCACCCCGCGCCATCTCCAGCTAGCCATCCGCGGGGATGAGGAGCT 415
consensus_15565#2 CAAGGTGAAGCGTATCACCCCGCGCCATCTCCAGCTAGCCATCCGCGGGGATGAGGAGCT 340
** * *
consensus_15565#0 CGACACCCTCATCAAGGGCACCATAGCCGGCGGCGGCGTCATCCCGC-ACATCCACAAGT 588
consensus_15565#3 ------------------------------------------------------------
consensus_15565#1 CGACACGCTCATCAAGGGCACCATCGCCGGCGGTGGCGTCATCCCCC-ATATCCACAAGT 474
consensus_15565#2 CGACACGCTCATCAAGGGCACCATCGCCGGCGGTGGCGTCATCCCCCCATATCCACAAGT 400
consensus_15565#0 CCCTCATCAACAAGACCGCCAAGGAGTAGGAGAGGCAGCGGCGGCTATGTGTTCTTGGAA 648
consensus_15565#3 ------------------------------------------------------------
consensus_15565#1 CGCTCATCAACAAGACCTCCAAAGAGT----GATGCGAAAAAAAAAAAACTCCCTCATGT 530
consensus_15565#2 CGCTCATCAACAAGACCTCCAA-GAGT----GATGCGAAAAAAAAAAAACTCCCTCATGT 455
consensus_15565#0 GTTTTCTATGACCTCTCTGCTAGGGGATTAGTGAGAAAAAAATCCCAGTTATCTTTTCAC 708
consensus_15565#3 ------------------------------------------------------------
consensus_15565#1 GCTTTGCTTGACTCGAAGTTTGGTGGGTGTTTTACTGTTAATTT---GTTATGTTTTCTC 587
consensus_15565#2 GCTTTGCTTGACTCGAAGTTTGGTGGGTGTTTTACTGTTAATTT---GTTATGTTTTCTC 512
consensus_15565#0 TAGTAGTCTTAATCATTTAGGACTTGTTGTTATGGTGATTACCTGAATTAGGTGTTCCTG 768
consensus_15565#3 ------------------------------------------------------------
consensus_15565#1 ATTTGATTTGATGTATTTGTGCTACAGTGTT-CAATCCTTAGTGGGTTTAGGTGCCTTTT 646
consensus_15565#2 ATTTGATTTGATGTATTTGTGCTACAGTGTT-CAATCCTTAGTGGGTTTAGGTGCCTTTT 571
consensus_15565#0 AATCTGTGTAATGGCTGGCTAAACCTTTGGTAATTTGGTGGTAGGGCTGAAGACTTGACT 828
consensus_15565#3 ------------------------------------------------------------
consensus_15565#1 AGTCTTTTGAAATTATCGTGACAATGTTGGT----------TGCAGCTGAATTCTTGTGA 696
consensus_15565#2 AGTCTTTTGAAATTATCGTGACAATGTTGGT----------TGCAGCTGAATTCTTGTGA 621
consensus_15565#0 TGCAGCAGCTTGGTGTAGTTGTGATGTGAAACTGCTTATATTTTTCTCTCTGTTGGG--T 886
consensus_15565#3 ------------------------------------------------------------
consensus_15565#1 ATTCTTCACTCCGTAT-GCTGTTCTG---AACCATCCATCTCGATGCTTCAGTTCAGATT 752
consensus_15565#2 ATTCTTCACTCCGTAT-GCTGTTCTG---AACCATCCATCTCGATGCTTCAGTTCAGATT 677
consensus_15565#0 GACTAGCTAATGCTTGGTTGTTACTTG-TTGATGACAAAAAAAA-- 929
consensus_15565#3 ----------------------------------------------
consensus_15565#1 ATCTTGTTAATGTTTAAGATCAGTTCGATTGATTGGCATGTGCCCA 798
consensus_15565#2 ATCTTGTTAATGTTTAAGATCAGTTCGATTGAAAAAAAAAAAAAAA 723
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||