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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15579#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 17 consensus length = 1064 fasta sequence
[CCATCCTCTCGCATCACCAATTCTAACCCTAACGACAACCCTACTCTCTCTCTCCAACAATCAAAGATTCGATGGCCGTGCTGGTGGCGAGGCAGGGGCGGGAGCTGCAGCGGTACACGAGCGCCGGGGGCCGCATCGTGGTGGGTTGCATCCCGTACCGGGTGCGCAGCGG-CGGCGAGATGGAGGTGCTGGTGATCACGTCGCAGAAGGGGCACGGCATGATGTTCCCCAAGGGCGGGTGGGAGCTCGACGAGTCCATGGACGAGGCCGCCCGCCGCGAGGCGCT-CGAGGAGGCCGGCGTCCGCGGCGACACCGAGACGTCCC-TCGGC-TGC-TGGTACTACAAGAGCCGCCGCTACGACACC-ACCTACGAGGGCTTCATGTTCCCTCTCCGCGTCACCGACGAGCTCC-TCCAG-TGGCCCG-AGATGTCCTCCCGCAAGCGCACCTGGGCCACGGTGCAGCA-GGCGATGGATGGATG-CCAGCACGGTTGGATGCGTGAGGCGCTCG-AGCGGCTC-GTCTCCCGGCACGCC-ACCAACAAGCTGCAGTCTGCGCTGTAAACCCAACCAAAA-TCAAAGCGAGCTGAG-TCGCGCG-AGAAGGGAAACGGGCGGG-CTACGAGCACAGCACGG-GCGGCGGC-GCG-AAGTCGCCGGCGTCGTGTTCGCTCTCCCGGTGAAGCG-GCAGGCCGGCCGGGC-TC-GATCACATCTCGATCGAGCACCATATATTTTGGCCGCCCTCACCGGAGAGCGAGACGACGGCGGACGAATGCCCCGCG-CGGAGATCGGAGCACGCCGACGACGACGACTCTTCA-TTTGGGGTTGCAGGGGTCGTCGTCGTGTAT-ACGT-ACGTCGCGGCGAAATAACGGCGCGAGAATTTTAGAAAGTTTGAAGATTCGGCATCTTGTAAAAAAAGATCGAAGCTGGAACAAGCC-AATTAATTTAAAACACCACATTGCGAAAGC-AATTCGAGATTCTTCCTTTGAAGCAACAAAAAGTGTCAAAATGAACCGCAGTAATTACCAGTGCCATTTCGTGTCGGTACAATTAATGAGCTGATTGATGGTAAAAAAAAAA]
[+] EMBL AK059780 [CCATCCTCTCGCATCACCAATTCTAACCCTAACGACAACCCTACTCTCTCTCTCCAACAATCAAAGATTCGATGGCCGTGCTGGTGGCGAGGCAGGGGCGGGAGCTGCAGCGGTACACGAGCGCCGGGGGCCGCATCGTGGTGGGTTGCATCCCGTACCGGGTGCGCAGCGG CGGCGAGATGGAGGTGCTGGTGATCACGTCGCAGAAGGGGCACGGCATGATGTTCCCCAAGGGCGGGTGGGAGCTCGACGAGTCCATGGACGAGGCCGCCCGCCGCGAGGCGCT CGAGGAGGCCGGCGTCCGCGGCGACACCGAGACGTCCC TCGGC TGC TGGTACTACAAGAGCCGCCGCTACGACACC ACCTACGAGGGCTTCATGTTCCCTCTCCGCGTCACCGACGAGCTCC TCCAG TGGCCCG AGATGTCCTCCCGCAAGCGCACCTGGGCCACGGTGCAGCA GGCGATGGATGGATG CCAGCACGGTTGGATGCGTGAGGCGCTCG AGCGGCTC GTCTCCCGGCACGCC ACCAACAAGCTGCAGTCTGCGCTGTAAACCCAACCAAAA TCAAAGCGAGCTGAG TCGCGCG AGAAGGGAAACGGGCGGG CTACGAGCACAGCACGG GCGGCGGC GCG AAGTCGCCGGCGTCGTGTTCGCTCTCCCGGTGAAGCG GCAGGCCGGCCGGGC TC GATCACATCTCGATCGAGCACCATATATTTTGGCCGCCCTCACCGGAGAGCGAGACGACGGCGGACGAATGCCCCGCG CGGAGATCGGAGCACGCCGACGACGACGACTCTTCA TTTGGGGTTGCAGGGGTCGTCGTCGTGTAT ACGT ACGTCGCGGCGAAATAACGGCGCGAGAATTTTAGAAAGTTTGAAGATTCGGCATCTTGTAAAAAAAGATCGAAGCTGGAACAAGCC AATTAATTTAAAACACCACATTGCGAAAGC AATTCGAGATTCTTCCTTTGAAGCAACAAAAAGTGTCAAAATGAACCGCAGTAATTACCAGTGCCATTTCGTGTCGGTACAATTAATGAGCT ]
[+] EMBL AK104571 [ TCCTCTCGCATCACCAATTCTAACCCTAACGACAACCCTACTCTCTCTCTCCAACAATCAAAGATTCGATGGCCGTGCTGGTGGCGAGGCAGGGGCGGGAGCTGCAGCGGTACACGAGCGCCGGGGGCCGCATCGTGGTGGGTTGCATCCCGTACCGGGTGCGCAGCGG CGGCGAGATGGAGGTGCTGGTGATCACGTCGCAGAAGGGGCACGGCATGATGTTCCCCAAGGGCGGGTGGGAGCTCGACGAGTCCATGGACGAGGCCGCCCGCCGCGAGGCGCT CGAGGAGGCCGGCGTCCGCGGCGACACCGAGACGTCCC TCGGC TGC TGGTACTACAAGAGCCGCCGCTACGACACC ACCTACGAGGGCTTCATGTTCCCTCTCCGCGTCACCGACGAGCTCC TCCAG TGGCCCG AGATGTCCTCCCGCAAGCGCACCTGGGCCACGGTGCAGCA GGCGATGGATGGATG CCAGCACGGTTGGATGCGTGAGGCGCTCG AGCGGCTC GTCTCCCGGCACGCC ACCAACAAGCTGCAGTCTGCGCTGTAAACCCAACCAAAA TCAAAGCGAGCTGAG TCGCGCG AGAAGGGAAACGGGCGGG CTACGAGCACAGCACGG GCGGCGGC GCG AAGTCGCCGGCGTCGTGTTCGCTCTCCCGGTGAAGCG GCAGGCCGGCCGGGC TC GATCACATCTCGATCGAGCACCATATATTTTGGCCGCCCTCACCGGAGAGCGAGACGACGGCGGACGAATGCCCCGCG CGGAGATCGGAGCACGCCGACGACGACGACTCTTCA TTTGGGGTTGCAGGGGTCGTCGTCGTGTAT ACGT ACGTCGCGGCGAAATAACGGCGCGAGAATTTTAGAAAGTTTGAAGATTCGGCATCTTGTAAAAAAAGATCGAAGCTGGAACAAGCC AATTAATTTAAAACACCACATTGCGAAAGC AATTCGAGATTCTTCCT ]
[+] EMBL CF325050 [ gCGCATCACCAATTCTAACCCTAACGACAACCCTACTCTCTCTCTCCAACAATCAAAGATTCGATGGCCGTGCTGGTGGCGAGGCTTGGTCGGGAGCTGCAGCGGTACACGAGCGCCGGGGGCCGC ]
[+] EMBL AU057570 [ GCATCACCAATTCTAACCCTAACGACAACCCTACTCTCTCTCTCCAACAATCAAAGATTCGATGGCCGTGCTGGTGGCGAGGCAGGGGCGGGAGCTGCAGCGGTACACGAGCGCCGGGGGCCGCATCGTGGTGGGTTGCATCCCGTACCGGGTGCGCA CGG CGGCGAGATGGAGGTGCTGGTGATCACGTCGCAGAAGGGGCACGGCATGATGTTCCCCAAGGGCGGGTGGGAGCTCGACGAGTCCATGGACGAGGCCGCCCGCCGCGAGG GCTNCGAGGAGGCCGGCGTCCGCGGCGACACCGAGACGTCCC TCGGC TGC TGGTACTACAAGAGCCGCCGCTACGACACC ACCTACGAGGGCTTCATGTTCCCTCTCCGCGTCACCGACGAGCTCC TCCAG TGGCCCG AGATGTCCTCCCGCAAGCGCACCTGGGCCACGGTGCAGCANGGCGATGGATGGATG CCANCAAGGTTGGATGCGTGANGCGCTCGAAGCGGCTC GTCTCCCGGCANGCCAACAAACAAGCTGCAGTCTGCGCTGTAAAACCAACCAAAATTCAAAGCGAAGTGAA TCGCGCGAAGAAGGGGAAANGGCGGG ]
[+] EMBL CA755740 [ CAATTCTAACCCTAACGACAACCCTACTCTCTCTCTCCAACAATCAAAGATTCGATGGCCGTGCTGGTGGCGAGGCAGGGGCGGGAGCTGCAGCGGTACACGAGCGCCGGGGGCCGCATCGTGGTGGGTTGCATCCCGTACCGGGTGCGCAGCGG CGGCGAGATGGAGGTGCTGGTGATCACGTCGCAGAAGGGGCACGGCATGATGTTCCCCAAGGGCGGGTGGGAGCTCGACGAGTCCATGGACGAGGCCGCCCG ]
[+] EMBL CA756035 [ ATTCTAACCCTTTCTACTATCCTACTCTCTCTCTCCTACAATCACAGATTCGATGGCCGAGCTGGAGGCGAGGCAGGGGCGGGAGCTGCAGCGGTACACGAGCGCCGGGGGCCGCATCGAGGTGGGTTGCATCCCGTACCGGGCGCGCAGCGG CGGCGAGATGGAGGTGCTGGTGATCACGTCGCACAAGGGGCACGGGATGATGTTCCCCAAGGGCGGGTGGGAGCTCGACGAGT ]
[+] EMBL AU058345 [ GTGGTGGGTTGCATCCCGTACCGGGTGCGCA NGG CGGCGAGATGGAGGTGCTGGTGATCACGTCGCAGAAGGGGCACGGCATGATGTTCCCCAAGGGCGGGTGGGAGCTCGACGAGTCCATGGACGAGGCCGCCCGCCGCGAGGC TT CGAGGAGGCCGGCGTCCGCGGCGACACCGAGACGTCCC TCGGCTTGCTTGGTACTACAAGAGCCGCCGTTACGACACCAACTTACGANGGCTTCATGTTCCCTCTCCGCGTCAC ]
[+] EMBL AU065616 [ GTGGTGGGTTGCATCCCGTACCGGGTGCGCA CGGCCGGCGAGATGGAGGTGCTGGTGATCACGTCGCAGAAGGGGCACGGCATGATGTTCCCCAAGGGCGGGTGGGAGCTCGACGAGTCCATGGACGAGGCCGCCCGCCGCGANGC TT CGAGGAGGCCGGCGTCCGCGGCGACACCGAGACGTCCC TCGGC TGC TGGTACTACAAGAGCCGCCGCTACGACACC ACCTACGAGGGCTTCATGTTCCCTCTCCGCGTCACCGACGAGCTTC TTCAGTTGGCCCG AGATGTCCTCCCGCAAGCGCACttn ]
[+] EMBL AU057571 [ GCNGCCCGCC CGA GCGCT CGAGGAGGCCGGCTTCCGCGGCGACACCGAGACGTCCCTTCGGC TGC TGGTACTACAAGAGCCGCCGCTACGACACC A CTACGAGGGCTTCATGTTCCCTCTCCGCGTCACCGACGAGCTCC TCCAG TGGCCCG AGATGTCCTCCCGCAAGCGCACCTGGGCCACGGTGCAGCA GGCGATGGATGGATG CCAGCACGGTTGGATGCGTGAGGCGCTCG AGCGGCTC GTCTCCCGGCACGCC ACCAACAAGCTGCAGTCTGCGCTGTAAACCCAACCAAAA TCAAAGCGAGCTGAG TCGCGCG AGAAGGGAAACGGGCGGG CTACGAGCACAGCACGG GCGGCGGC GCG AAGTCGCCGGCGTCGTGTTCGCTCTCCCGGTGAAGCG GCAGGCCGGCCGGGC TC GATCACATCTCGATCGAGCACCATATATTTTGGCCGCCCTCACCGGAGAGCGAGACGACGGCGGACGAATGCCCCGCG CGGAGATCGGAGCACGCCGACGACGACGACTCTTCA TTTGGGGTTGCAGGGGTCGTCGTCGTGTAT ACGT ACGTCGCGGCGAAATAACGGCGCGAGAATTTTAGAAAGTTTGAAGATTCGGCATCTTGTAAAAAAAGATCGAAGCTGGAACAAGCC AATTAATTTAAAACACCACATTGCGAAAGC AAaaaaaa ]
[+] EMBL AU030069 [ ncnagcctT CGNNGAAGCCCGNNTCCGCGGCNACACCGA ACNTCCCTTCGNT TGC TGTTACTACAAGA CCNCCNTTA GACACC ACTTACGAGGGCTTCATGTTCCCTNTCCG GTCACCGACGAGCTCCTTCCAG TGGCCCG AGATGTCCTCCCGCAAGCGCACCTGGGCCACGGTGCAGCA GGCGATGGATGGATG CCAGCACGGTTGGATGCGTNAGGCGCTCG AGCGGCTC GTCTCCCGGCACGCC ACCAACAAGCTGCAGTCTGCGCTGTAAACCCAACCAAAA TCAAAGCGAGCTGAG TCGCGCG AGAAGGGAAACGGGCGGG CTACGAGCACAGCACGG GCGGCGGC GCG AAGTCGCCGGCGTCGTGTTCGCTCTCCCGGTGAAGCG GCAGGCCGGCCGGGC TC GATCACATCTCGATCGAGCACCATATATTTTGGCCGCCCTCACCGGAGAGCGAGACGACGGCGGACGAATGCCCCGCG CGGAGATCGGAGCACGCCGACGACGACGACTCTTCA TTTGGGGTTGCAGGGGTCGTCGTCGTGTAT ACGT ACGTCGCGGCGAAATAACGGCGCGAGAATTTTAGAAAGTTTGAAGATTCGGCATCTTGTAAAAAAAGATCGAAGCTGGAACAAGCC AATTAATTTAAAACACCACATTGCGAAAGC AAaaaaaaa ]
[+] EMBL AU095798 [ ctTCC TCCAG TGGCCCGAAGATGTCCTCCCGCAAGCGCACCTGGGCCACGGTGCAGCA GGCGATGGATGGATGCCCAGCACGGTTGGATGCGTGAGGCGCTCG AGCGGCTC GTCTCCCGGCACGCC ACCAACAAGCTGCAGTNTGCGCTGTAAACCCAACCAAAA TCAAAGCGAGCTGAG TCGCGCG AGAAGGGAAACGGGCGGG CTACGAGCACAGCACGG GCGGCGGC GCG AAGTCGCCGGCGTCGTGTTCGCTCTCCCGGTGAAGCG GCAGGCCGGCCGGGC TC GATCACATCTCGATCGAGCACCATATATTTTGGCCGCCCTCACCGGAGAGCGAGACGACGGCGGACGAATGCCCCGCG CGGAGATCGGAGCACGCCGACGACGACGACTCTTCA TTTGGGGTTGCAGGGGTCGTCGTCGTGTAT ACGT ACGTCGCGGCGAAATAACGGCGCGAGAATTTTAGAAAGTTTGAAGATTCGGCATCTTGTAAAAAAAGATCGAAGCTGGAACAAGCC AATTAATTTAAAACACCACATTGCGAAAGC AATTCGAGATTCTTCCTTTGAAGCAACAAAAAa ]
[+] EMBL AU165427 [ CACCTGGGCCACGGTGCAGCA GGCGATGGATGGATG CCAGCACGGTTGGATGCGTGAGGCGCTCG AGCGGCTC GTCTCCCGGCACGCC ACCAACAAGCTGCAGTCTGCGCTGTAAACCCAACCAAAA TCAAAGCGAGCTGAG TCGCGCG AGAAGGGAAACGGGCGGG CTACGAGCACAGCACGG GCGGCGGC GCG AAGTCGCCGGCGTCGTGTTCGCTCTCCCGGTGAAGCG GCAGGCCGGCCGGGC TC GATCACATCTCGATCGAGCACCATATATTTTGGCCGCCCTCACCGGAGAGCGAGACGACGGCGGACGAATGCCCCGCG CGGAGATCGGAGCACGCCGACGACGACGACTCTTCA TTTGGGGTTGCAGGGGTCGTCGTCGTGTAT ACGT ACGTCGCGGCGAAATAACGGCGCGAGAATTTTAGAAAGTTTGAAGATTCGGCATCTTGTAAAAAAAGATCGAAGCTGGAACAAGCC AATTAATTTAAAACACCACATTGCGAAAGC AATTCGAGATTCTTCCTTTGAAGCAAAAA ]
[+] EMBL C72120 [ CCTGGGCCACGGTGCAGCA GGCGATGGATGGATG CCAGCACGGTTGGATGCGTGAGGCGCTCG AGCGGCTC GTCTCCCGGCACGCC ACCAACAAGCTGCAGTCTGCGCTGTAAACCCAACCAAAA TCAAAGCGAGCTGAG TCGCGCG AGAAGGGAAACGGGCGGG CTACGAGCACAGCACGG GCGGCGGC GCG AAGTCGCGGACGTCGTGTTCGCTCTCCCGGTGAAGCG GCAGGCCGGCCGGGC TC GATCACATCTCGATCGAGCACCATATATTTTGGCCGCCCTCACCGGAGAGCGAGACGACGGCGGACGAATGCCCCGCG CGGAGATCGGAGCACGCCGACGACGACGACTCTTCATTTTGGGGTTGCAGGGGTCGTCGTCGTGTATAACGTAACGTCGCGGCG AATAACGGCGCanatt ]
[-] EMBL BI305577 [ CGGTGCAGCA GCCGATGGATGGATG CCAGCACGGTTGGATGCGTGAGGCGCTCG ACCGGCTC GTCTCCCGGCACGCC ACCAACAAGCTGCAGTCTGCGCTGTAAACCCAACCAAAA TCAAAGCGAGCTGAG TCGCGCG AGAAGGGAAACGGGCGGG CTACGAGCACAGCACGG GCGGCGGC GCG AAGTCGCCGGCGTCGTGTTCGCTCTCCCGGTGAAGCG GCAGGCCGGCCGGGC TC GATCACATCTCGATCGAGCACCATATATTTTGGCCGCCCTCACCGGAGAGCGAGACGACGGCGGACGAATGCCCCGCG CGGAGATCGGAGCACGCCGACGACGACGACTCTTCA TTTGGGGTTGCAGGGGTCGTCGTCGTGTAT ACGT ACGTCGCGGCGAAATAACGGCGCGAGAATTTTAGAAAGTTTGAAGATTCGGCATCTTGTAAAAAAAGATCGAAGCTGGAACAAGCC AATTAATTTAAAACACCACATTGCGAAAGC AATTCGAGATTCTTt ]
[+] EMBL BI808242 [ CGGCTCTGTCTCCCGGCACGCC ACCAACAAGCTGCAGTCTGCGCTGTAAACCCGACCTAAA TCAAAGCGAGCTGAGTTCGCGCG AGAAGGGAAAC GGCGGGTCTACGAGCACAGCACGGTGCGGCGGCTGCGTAAGTC CCGGC TCGTGTTCGCTCTCCCGGTGAA C GCA GCC GCCGGGC TC GATCACATCTCGATCGAGCACCATATATTTTGGCCGCCCTCACCGGAGAGCGAGACGAC GCGGACGAATGCCCCGCG CGGAGATCGGAGCACGCCGACGACGACGACTCTTCA TTTGGGGTTGCAGGGGTCGTCGTCGTGTAT ACGT ACGTCGCGGCGAAATAACGGCGCGAGAATTTTAGAAAGTTTGAAGATTCGGCATCTTGTAAAAAAAGATCGAAGCTGGAACAAGCC AATTAATTTAAAACACCACATTGCGAAAGC AAaaaaaaaa ]
[+] EMBL BQ907733 [ GCTGAG TCGCGCG AGAAGGGAAACGGGCGGG CTACGAGCACAGCACGG GCGGCGGC GCG AAGTCGCCGGCGTCGTGTTCGCTCTCCCGGTGAAGCGTGCA GCCGGCCGGGCTTCAGATCACATCTCGATCGAGCACCATATATTTT GCCGCCCTCACCGGAGAGCGAGACGACGGCGGACGAATGCCCCGCG CGGAGATCGGAGCACGCCGACGACGACGACTCTTCA TTTGGGGTTGCAGGGGTCGTCGTCGTGTAT ACGT ACGTCGCGGCGAAATAACGGCGCGAGAATTTTAGAAAGTTTGAAGATTCGGCATCTTGTAAAAAAAGATCGAAGCTGGAACAAGCCAAATTAATTTAAAACACCACATTGCGAAAGCAAATTCGAGATTCTTTCTTTGAAGCAAAAA ]
[+] EMBL BI806890 [ tCCCCGCGTCGGAGATCGGAGCACGCCGACGACGACGACTCTTCA TTTGGGGTTGCAGGGGTCGTCGTCGTGTAT ACGT ACGTCGCGGCGAAATAACGGCGCGAGAATTTTAGAAAGTTTGAAGATTCGGCATCTTGTAAAAAAAGATCGAAGCTGGAACAAGCC CATTAANTTAAAACACCACATTGCGAAAGC AATTCGAGATTCTTCCTTTGAAGCAACAAAAAGTGTCAAAATGAACCGCAGTAATTACCAGTGCCATTTCGTGTCGGTACAATTAATGAGCTGATTGATGGTAAAAAAAAAA]
consensusID : consensus_15579#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 961 fasta sequence
[GCAGCAGGCAATGGATGGATGCCAGCACGGTTGGATGCGTGAGGCGCTCGAGCGGCTCGTCTCCCGGCACGCCACCAACAAGCTGCAGTCTGCGCTGTAAACCCAACCAAAATCAAAGCGAGCTGAGTCGCGCGAGAAGGGAAATGGGCGGGCTACGAGCACAGCACGGGCGGCGGCGCGAAGTCGCCGGCGTCGTGTTCGCTCTCCCGGTGAAGCGGCAGGCCGGCCGGGCTCGATCACATCTCGATCGAGCACCATATATTTTGGCCGCTCTCACCGGAGAGCGAGACGACGGCGGACGAATGCCCCGCGCGGAGATCGGAGCACGCCGACGACGACGACTCTTAATTTGGGGTTGCAGGGGTCGGCAAGCGGTTTACGACCCCCGCCGCGAAAAAACCGCCGCGAGATCGCGAAAAGCGCCGGGATGGGGGTGCGCGGAAAAAAAGAACGGGGCGGCGGCAGGCGATCGGACGCACGGCCCCCGGTACCACACACCCACAGACCGCGCCCAACCAGCCACTGCCCCCAGACAGCAGCACTAAAGGCGCGAGAAGTAACAAGAGGGGAAGGAAGGAGGCAGAAAGGAGAGACCGGGAGCAACGCGCCACCGACCACGCGAGAGCAGACGGAAGACCTGCACCTCGCCGCAATGTCAGAAGCCCAAGCACGCGCAACACCAGCCGCACACCGAACCGGCACCCGAACCGACACCTCGCAGGTGCTCATCGGGCAGCTGGGGCACGCAATCGCCCCACGACTCGAACCAACGGCAAGCACCGAAAGAAAGCCGACCGCGCCGACAACCCAGGACGCTGCGAGGAACAGAGGACGCGGAGACGCGGTACTCCCACCGCAACAGAAGACCATCGCCGGCATGCGAACAAGCGACCCCGCACAAGGATTCGAAACACACGGAAGAGGCGGACCTGACGCGGTCCGCCGAGCTGTAGCATCCGCA]
[+] EMBL BE039846 [GCAGCAGGCAATGGATGGATGCCAGCACGGTTGGATGCGTGAGGCGCTCGAGCGGCTCGTCTCCCGGCACGCCACCAACAAGCTGCAGTCTGCGCTGTAAACCCAACCAAAATCAAAGCGAGCTGAGTCGCGCGAGAAGGGAAATGGGCGGGCTACGAGCACAGCACGGGCGGCGGCGCGAAGTCGCCGGCGTCGTGTTCGCTCTCCCGGTGAAGCGGCAGGCCGGCCGGGCTCGATCACATCTCGATCGAGCACCATATATTTTGGCCGCTCTCACCGGAGAGCGAGACGACGGCGGACGAATGCCCCGCGCGGAGATCGGAGCACGCCGACGACGACGACTCTTAATTTGGGGTTGCAGGGGTCGGCAAGCGGTTTACGACCCCCGCCGCGAAAAAACCGCCGCGAGATCGCGAAAAGCGCCGGGATGGGGGTGCGCGGAAAAAAAGAACGGGGCGGCGGCAGGCGATCGGACGCACGGCCCCCGGTACCACACACCCACAGACCGCGCCCAACCAGCCACTGCCCCCAGACAGCAGCACTAAAGGCGCGAGAAGTAACAAGAGGGGAAGGAAGGAGGCAGAAAGGAGAGACCGGGAGCAACGCGCCACCGACCACGCGAGAGCAGACGGAAGACCTGCACCTCGCCGCAATGTCAGAAGCCCAAGCACGCGCAACACCAGCCGCACACCGAACCGGCACCCGAACCGACACCTCGCAGGTGCTCATCGGGCAGCTGGGGCACGCAATCGCCCCACGACTCGAACCAACGGCAAGCACCGAAAGAAAGCCGACCGCGCCGACAACCCAGGACGCTGCGAGGAACAGAGGACGCGGAGACGCGGTACTCCCACCGCAACAGAAGACCATCGCCGGCATGCGAACAAGCGACCCCGCACAAGGATTCGAAACACACGGAAGAGGCGGACCTGACGCGGTCCGCCGAGCTGTAGCATCCGCA]
consensusID : consensus_15579#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 463 fasta sequence
[ATTCTAACCCTAACGACAACCCTACTCTCTCTCTCCAACAATCAAAGATTCGATGGCCGTGCTGGTGGCGAGGCAGGGGCGGGAGCTGCAGCGTTACACGAGCGCCGGGGGCCGCATCGTGGTGGGTTGCATCCCGTACCGGGTGCGCANGGCGGCGAGATGGAGGTGCTGGTGATCACGTCGCAGAAGGGGCACGGCATGATGTTCCCCAAGGGCGGGTGGGAGCTCGACGAGTCCATGGACGAGGCCGNCCGNCGCGAGGTTTCGAGGAGGCCGGCGTCCGCGNCGACACCGAGACGTCCCTCGGCTGCTGGTACTACAAGAGCCGCCGTACGACANCACCTACGAGGGCTTCATGTTCCCTCTCCGNGTCAACGACGAGGTCTTCAGTGGCCGAGATNTCCTCCCGAANTGAACTTGGGGCACGTGAAGAANCGATGATGATTCAGACGTTGATTTGTAA]
[+] EMBL OSS10954A [ATTCTAACCCTAACGACAACCCTACTCTCTCTCTCCAACAATCAAAGATTCGATGGCCGTGCTGGTGGCGAGGCAGGGGCGGGAGCTGCAGCGTTACACGAGCGCCGGGGGCCGCATCGTGGTGGGTTGCATCCCGTACCGGGTGCGCANGGCGGCGAGATGGAGGTGCTGGTGATCACGTCGCAGAAGGGGCACGGCATGATGTTCCCCAAGGGCGGGTGGGAGCTCGACGAGTCCATGGACGAGGCCGNCCGNCGCGAGGTTTCGAGGAGGCCGGCGTCCGCGNCGACACCGAGACGTCCCTCGGCTGCTGGTACTACAAGAGCCGCCGTACGACANCACCTACGAGGGCTTCATGTTCCCTCTCCGNGTCAACGACGAGGTCTTCAGTGGCCGAGATNTCCTCCCGAANTGAACTTGGGGCACGTGAAGAANCGATGATGATTCAGACGTTGATTTGTAA]
consensusID : consensus_15579#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 360 fasta sequence
[CGTGTCGAATTCGGCACGAGAACGGGCGGGCTACGAGCACAGCACGGGCGGCGGCGCGAAGTCGCCGGCGTCGTGTTCGCTCTCCCGGTGAAGCGGCAGGCCGGCCGGGCTCGATCACATCTCGATCGAGCACCATATATTTTGGCCGCCCTCACCGGAGAGCGAGACGACGGCGGACGAATGCCCCGCGCGGAGATCGGAGCACGCCGACGACGACGACTCTTCATTTGGGGTTGCAGGGGTCGTCGTCGTGTATACGTACGTCGCGGCGAAATAACGGCGCGAGAATTTTAGAAAGTTTGAAGATTCGGCATCTTGTAAAAAAAGATCGAAGCTGGAACAAGCCAATTAATTTAAAAC]
[+] EMBL BE229874 [CGTGTCGAATTCGGCACGAGAACGGGCGGGCTACGAGCACAGCACGGGCGGCGGCGCGAAGTCGCCGGCGTCGTGTTCGCTCTCCCGGTGAAGCGGCAGGCCGGCCGGGCTCGATCACATCTCGATCGAGCACCATATATTTTGGCCGCCCTCACCGGAGAGCGAGACGACGGCGGACGAATGCCCCGCGCGGAGATCGGAGCACGCCGACGACGACGACTCTTCATTTGGGGTTGCAGGGGTCGTCGTCGTGTATACGTACGTCGCGGCGAAATAACGGCGCGAGAATTTTAGAAAGTTTGAAGATTCGGCATCTTGTAAAAAAAGATCGAAGCTGGAACAAGCCAATTAATTTAAAAC]
[+] EMBL BE230628 [CGTGTCGAATTCGGCGCGAGAACGGGCGGGCTACGAGCACAGCACGGGCGGCGGCGCGAAGTCGCCGGCGTCGTGTTCGCTCTCCCGGTGAAGCGGCAGGCCGGCCGGGCTCGATCACATCTCGATCGAGCACCATATATTTTGGCCGCCCTCACCGGAGAGCGAGACGACGGCGGACGAATGCCCCGCGCGGAGATCGGAGCACGCCGACGACGACGACTCTTCATTTGGGGTTGCAGGGGTCGTCGTCGTGTATACGTACGTCGCGGCGAAATAACGGCGCGAGAATTTTAGAAAGTTTGAAGATTCGGCATCTTGTAAAAAAAGATCGAAGCTGGAACAAGCC ]
consensusID : consensus_15579#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 252 fasta sequence
[CCGATTCGGCACGAGTCGTGCCGGGAGAGCGAGACGACGGCGGACGAATGCCCCGCGCGGAGATCGGAGCACGCCGACGACGACGACTCTTCATTTGGGGTTGCAGGGGTCGTCGTCGTGTATACGTACGTCGCGGCGAAATAACGGCGCGAGAATTTTAGAAAGTTTGAAGATTCGGCATCTTGTAAAAAAAGATCGAAGCTGGAACAAGCCAATTAATTTAAAACACCACATTGCGAAAGCAATTCGAAA]
[+] EMBL AA751831 [CCGATTCGGCACGAGTCGTGCCGGGAGAGCGAGACGACGGCGGACGAATGCCCCGCGCGGAGATCGGAGCACGCCGACGACGACGACTCTTCATTTGGGGTTGCAGGGGTCGTCGTCGTGTATACGTACGTCGCGGCGAAATAACGGCGCGAGAATTTTAGAAAGTTTGAAGATTCGGCATCTTGTAAAAAAAGATCGAAGCTGGAACAAGCCAATTAATTTAAAACACCACATTGCGAAAGCAATTCGA ]
[+] EMBL AU166195 [ ATACGTACGTCGCGGCGAAATAACGGCGCGAGAATTTTAGAAAGTTTGAAGATTCGGCATCTTGTAAAAAAAGATCGAAGCTGGAACAAGCCAATTAATTTAAAACACCACATTGCGNAAGCAAaaaaaaa]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15579#1 ------------------------------------------------------------
consensus_15579#3 ------------------------------------------------------------
consensus_15579#4 ------------------------------------------------------------
consensus_15579#0 CCATCCTCTCGCATCACCAATTCTAACCCTAACGACAACCCTACTCTCTCTCTCCAACAA 60
consensus_15579#2 ------------------------------------------------------------
consensus_15579#1 ------------------------------------------------------------
consensus_15579#3 ------------------------------------------------------------
consensus_15579#4 ------------------------------------------------------------
consensus_15579#0 TCAAAGATTCGATGGCCGTGCTGGTGGCGAGGCAGGGGCGGGAGCTGCAGCGGTACACGA 120
consensus_15579#2 ------------------------------------------------------------
consensus_15579#1 ------------------------------------------------------------
consensus_15579#3 ------------------------------------------------------------
consensus_15579#4 ------------------------------------------------------------
consensus_15579#0 GCGCCGGGGGCCGCATCGTGGTGGGTTGCATCCCGTACCGGGTGCGCAGCGGCGGCGAGA 180
consensus_15579#2 ------------------------------------------------------------
consensus_15579#1 ------------------------------------------------------------
consensus_15579#3 ------------------------------------------------------------
consensus_15579#4 ------------------------------------------------------------
consensus_15579#0 TGGAGGTGCTGGTGATCACGTCGCAGAAGGGGCACGGCATGATGTTCCCCAAGGGCGGGT 240
consensus_15579#2 ------------------------------------------------------------
consensus_15579#1 ------------------------------------------------------------
consensus_15579#3 ------------------------------------------------------------
consensus_15579#4 ------------------------------------------------------------
consensus_15579#0 GGGAGCTCGACGAGTCCATGGACGAGGCCGCCCGCCGCGAGGCGCTCGAGGAGGCCGGCG 300
consensus_15579#2 ------------------------------------------------------------
consensus_15579#1 ------------------------------------------------------------
consensus_15579#3 ------------------------------------------------------------
consensus_15579#4 ------------------------------------------------------------
consensus_15579#0 TCCGCGGCGACACCGAGACGTCCCTCGGCTGCTGGTACTACAAGAGCCGCCGCTACGACA 360
consensus_15579#2 ------------------------------------------------------------
consensus_15579#1 ------------------------------------------------------------
consensus_15579#3 ------------------------------------------------------------
consensus_15579#4 ------------------------------------------------------------
consensus_15579#0 CCACCTACGAGGGCTTCATGTTCCCTCTCCGCGTCACCGACGAGCTCCTCCAGTGGCCCG 420
consensus_15579#2 ------------------------------------------------------------
consensus_15579#1 ----------------------------------GCAGCAGGCAATGGATGGATGCCAGC 26
consensus_15579#3 ------------------------------------------------------------
consensus_15579#4 ------------------------------------------------------------
consensus_15579#0 AGATGTCCTCCCGCAAGCGCACCTGGGCCACGGTGCAGCAGGCGATGGATGGATGCCAGC 480
consensus_15579#2 ------------------------------------------------------------
consensus_15579#1 ACGGTTGGATGCGTGAGGCGCTCGAGCGGCTCGTCTCCCGGCACGCCACCAACAAGCTGC 86
consensus_15579#3 ------------------------------------------------------------
consensus_15579#4 ------------------------------------------------------------
consensus_15579#0 ACGGTTGGATGCGTGAGGCGCTCGAGCGGCTCGTCTCCCGGCACGCCACCAACAAGCTGC 540
consensus_15579#2 ---------------------------------ATTCTAACCCTAACGACAACCCTACTC 27
consensus_15579#1 AGTCTGCGCTGTAAACCCAACCAAAATCAAAGCGAGCTGAGTCGCGCGAGAAGGGAAATG 146
consensus_15579#3 --------------------------------CGTGTCGAATTCGGCACGAG----AACG 24
consensus_15579#4 ------------------------------------------------------------
consensus_15579#0 AGTCTGCGCTGTAAACCCAACCAAAATCAAAGCGAGCTGAGTCGCGCGAGAAGGGAAACG 600
consensus_15579#2 TCTCTCTCCAACAATCAAAGATTCGATGGCCGTGCTGGTGGCGAGGCAGGGGCGGGAGCT 87
consensus_15579#1 GGCGGGCTACGAGCACAGCACGGGCGGCGGCGCGAAGTCGCCGGCGTCGTGTTCGCTCTC 206
consensus_15579#3 GGCGGGCTACGAGCACAGCACGGGCGGCGGCGCGAAGTCGCCGGCGTCGTGTTCGCTCTC 84
consensus_15579#4 ------------------------------------------------------------
consensus_15579#0 GGCGGGCTACGAGCACAGCACGGGCGGCGGCGCGAAGTCGCCGGCGTCGTGTTCGCTCTC 660
consensus_15579#2 GCAGCGTTACACGAGCGCCGGGGGCCGCATCGTG--GTGGGTTGCATCCCGTACCGGGTG 145
consensus_15579#1 CCGGTGAAGCGGCAGGCCGGCCGGGCT--CGATCACATCTC-GATCGAGCACCATAT-AT 262
consensus_15579#3 CCGGTGAAGCGGCAGGCCGGCCGGGCT--CGATCACATCTC-GATCGAGCACCATAT-AT 140
consensus_15579#4 ---------------------------------------CC-GATTCGGCACGAGTC-GT 19
consensus_15579#0 CCGGTGAAGCGGCAGGCCGGCCGGGCT--CGATCACATCTC-GATCGAGCACCATAT-AT 716
consensus_15579#2 C--GCANGGCGGCGAGATGGAGGTGCTGGTGATCACGTCGCAGAAGGGGCACGGCATGAT 203
* ** **** *
consensus_15579#1 TTTGGCCGCTCTCACCGGAGAGCGAGACGA--CGGCGGACGAA--TGCCCCGCGCGGAGA 318
consensus_15579#3 TTTGGCCGCCCTCACCGGAGAGCGAGACGA--CGGCGGACGAA--TGCCCCGCGCGGAGA 196
consensus_15579#4 ----GCCG--------GGAGAGCGAGACGA--CGGCGGACGAA--TGCCCCGCGCGGAGA 63
consensus_15579#0 TTTGGCCGCCCTCACCGGAGAGCGAGACGA--CGGCGGACGAA--TGCCCCGCGCGGAGA 772
consensus_15579#2 GTTCCCCAAGGGCGGGTGGGAGCTCGACGAGTCCATGGACGAGGCCGNCCGNCGCGAGGT 263
** * **** ***** * ****** * ** **** *
consensus_15579#1 TCGGAGCACGCCGACGACGACGACTCTTAATTTGGGGTTGCAGGGGTCGGCAAGCGGTTT 378
consensus_15579#3 TCGGAGCACGCCGACGACGACGACTCTTCATTTGGGGTTGCAGGGGTCGTCGTCGTGTAT 256
consensus_15579#4 TCGGAGCACGCCGACGACGACGACTCTTCATTTGGGGTTGCAGGGGTCGTCGTCGTGTAT 123
consensus_15579#0 TCGGAGCACGCCGACGACGACGACTCTTCATTTGGGGTTGCAGGGGTCGTCGTCGTGTAT 832
consensus_15579#2 TTCGAGGAGGCCGGCGTCCGCGNCGAC--ACCGAGACGTCCCTCGGCTGCTGGTACTACA 321
* *** * **** ** * ** * * * * * ** *
consensus_15579#1 ACGACCCCCGCCGCGAAAAAACCGCCGCGAGATCGCGAAAAGCGCCGGGATGGGGGTGCG 438
consensus_15579#3 ACGTACGTCGCGGCGAAATAACGGCGCGAGAATTTTAGAAAGTTTGAAGATTCGGCATCT 316
consensus_15579#4 ACGTACGTCGCGGCGAAATAACGGCGCGAGAATTTTAGAAAGTTTGAAGATTCGGCATCT 183
consensus_15579#0 ACGTACGTCGCGGCGAAATAACGGCGCGAGAATTTTAGAAAGTTTGAAGATTCGGCATCT 892
consensus_15579#2 AGAGCCGCCGTACGACANCACCTACGAGGGCTTCATGTTCCCTCTCCGNGTCAACGACGA 381
* * ** * * * * * *
consensus_15579#1 CGGAAAAAAAGAACGGGGCGGCGGCAGGCGATCGGACGCACGGCCCCCG--GTACCACAC 496
consensus_15579#3 TGTAAAAAAAGATCGAAGCTGGAACAAGCCAATTAATTTAAAAC---------------- 360
consensus_15579#4 TGTAAAAAAAGATCGAAGCTGGAACAAGCCAATTAATTTAAAACACCAC--ATTGCGAAA 241
consensus_15579#0 TGTAAAAAAAGATCGAAGCTGGAACAAGCCAATTAATTTAAAACACCAC--ATTGCGAAA 950
consensus_15579#2 GGTCTTCAGTGGCCGAGATNTCCTCCCG-AANTGAACTTGGGGCACGTGAAGAANCGATG 440
* * * ** * * * * *
consensus_15579#1 ACCCACAGACCGCGCCC-----AACCAGCCACTGCCCCCAGACAGCAGCACTAAAGGCGC 551
consensus_15579#3 ------------------------------------------------------------
consensus_15579#4 GCAATTCGAAA------------------------------------------------- 252
consensus_15579#0 GCAATTCGAGATTCTTCCTTTGAAGCAACAAAAAGTGTCAAAATGAACCGCAGTAATTAC 1010
consensus_15579#2 ATGATTCAGACGTTGATTTGTAA------------------------------------- 463
consensus_15579#1 GAGAAGTAACAAGAGGGGAAGGAAGGAGGCAGAAAGGAGAGACCGGGAGCAACGCGCCAC 611
consensus_15579#3 ------------------------------------------------------------
consensus_15579#4 ------------------------------------------------------------
consensus_15579#0 CAGTGCCATTTCGTGTCGGTACAATTAATGAGCTGATTGATGGTAAAAAAAAAA------ 1064
consensus_15579#2 ------------------------------------------------------------
consensus_15579#1 CGACCACGCGAGAGCAGACGGAAGACCTGCACCTCGCCGCAATGTCAGAAGCCCAAGCAC 671
consensus_15579#3 ------------------------------------------------------------
consensus_15579#4 ------------------------------------------------------------
consensus_15579#0 ------------------------------------------------------------
consensus_15579#2 ------------------------------------------------------------
consensus_15579#1 GCGCAACACCAGCCGCACACCGAACCGGCACCCGAACCGACACCTCGCAGGTGCTCATCG 731
consensus_15579#3 ------------------------------------------------------------
consensus_15579#4 ------------------------------------------------------------
consensus_15579#0 ------------------------------------------------------------
consensus_15579#2 ------------------------------------------------------------
consensus_15579#1 GGCAGCTGGGGCACGCAATCGCCCCACGACTCGAACCAACGGCAAGCACCGAAAGAAAGC 791
consensus_15579#3 ------------------------------------------------------------
consensus_15579#4 ------------------------------------------------------------
consensus_15579#0 ------------------------------------------------------------
consensus_15579#2 ------------------------------------------------------------
consensus_15579#1 CGACCGCGCCGACAACCCAGGACGCTGCGAGGAACAGAGGACGCGGAGACGCGGTACTCC 851
consensus_15579#3 ------------------------------------------------------------
consensus_15579#4 ------------------------------------------------------------
consensus_15579#0 ------------------------------------------------------------
consensus_15579#2 ------------------------------------------------------------
consensus_15579#1 CACCGCAACAGAAGACCATCGCCGGCATGCGAACAAGCGACCCCGCACAAGGATTCGAAA 911
consensus_15579#3 ------------------------------------------------------------
consensus_15579#4 ------------------------------------------------------------
consensus_15579#0 ------------------------------------------------------------
consensus_15579#2 ------------------------------------------------------------
consensus_15579#1 CACACGGAAGAGGCGGACCTGACGCGGTCCGCCGAGCTGTAGCATCCGCA 961
consensus_15579#3 --------------------------------------------------
consensus_15579#4 --------------------------------------------------
consensus_15579#0 --------------------------------------------------
consensus_15579#2 --------------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||