These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15606#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1257 fasta sequence [GGGCATGGTTAGATTCTGATTGCGAGGACGACTTCTACAGTGTGAATGGAGGTAATCTAATGATGCAGAGTAAATAGGTTCCTTCTCACTGGCATGTCTGTAGTGCCAGTGCCTTGTTCATGCTGTTTCCTTTTCAAGTCTATCCTATTATTGTATCAGTAGCATACTAGCATGAGGCCTGTTCTTTTTGTTTAGTCCAAATTGCATGTGCGCTGATTGATTTGGTGATGATACAGTTTTATCTGTCTCTCTGGATTCTAAGGGGCTTATTTTAGCCCTTTGATTGCTTGTTGAGACAAAAGGTTGAGGCCTTTGATTTCGTCTTTTGGCATTATCATGTTTCTAGCATCTAATAATCTGTTAGCTGCATTGGACCCCCCACCTTTAACTTCGGTTACCTATTCCATGGGGTCCTTTATTTCAGAAGTCTTGCTATACACTTAAATTATAAGAAACTCCATTTCTTCTGCATCATTCTGGAAGTTCAATGAACAAGTAGATATTCTACTGTACCAAGTGATTTTGATTGTTTTCAATTCATGTGTAATGTATGTTTTTTCGTGTGCAGATTTTACTCCGTCTCGTGGCAGCACTCCAAACTACCAACCCAGAACACAAACAGTTATGAGCAATGTCTTTGTACCTGATAATGTACAGAATTCCAAATCACCTGAACCTTCTCCAACTGGAAGGAGA-AAACTAGCCGAGCTC-TT-GCAGGAGGCGATGCAGAATGGTTCCGAAGATAGCACCGATGCATCTGTTCCAGACATCA-GCAAGAATGAGAAGC-AGCAATTCC-AGC-CTATTTCT-GCA-GCTGTGAAGCCAGTATCTGAGTCCAGCTCCACGTGTAGCAC-AGAACCGACGCCGATCAGAGAAGCGAAGAATCGCAAGGAGAAGGCGTGGTACA-CC-GGTC-GCT-GTTGCTTGCCGGCTTTTGTTCATACCCTAGACTTAGATGAGAGGAGGCAGAAGATGACCCCTGGGCCTTG-T-GCTGTTTGACATGGCTGCTTC-CCTTCTATGAGC--TGTATCTACAATATA-CTAC-CTGAT-CC-GGCC-CT-GAGTTC-ACTGT-AAAGAAGAC-TAGTA-TT--GAGAGC-A-CTATATCC-T-TGTAATAATCAA-GTGAATAGTCACTCTTGAGAATTCATGT-GCTGTATCCATGTTAAATCAACTGTAAGGTGAGGATATCTAGCT-CAAGAAATGATCATT-TTGTGCATATCTGGATGAATCTTTATGGATATAAAATTTTCTCAAAAATCAATAAAAAAAAAAAAA] [+] EMBL CB666092 [GGGCATGGTTAGATTCTGATTGCGAGGACGACTTCTACAGTGTGAATGGAGGTAATCTAATGATGCAGAGTAAATAGGTTCCTTCTCACTGGCATGTCTGTAGTGCCAGTGCCTTGTTCATGCTGTTTCCTTTTCAAGTCTATCCTATTATTGTATCAGTAGCATACTAGCATGAGGCCTGTTCTTTTTGTTTAGTCCAAATTGCATGTGCGCTGATTGATTTGGTGATGATACAGTTTTATCTGTCTCTCTGGATTCTAAGGGGCTTATTTTAGCCCTTTGATTGCTTGTTGAGACAAAAGGTTGAGGCCTTTGATTTCGTCTTTTGGCATTATCATGTTTCTAGCATCTAATAATCTGTTAGCTGCATTGGACCCCCCACCTTTAACTTCGGTTACCTATTCCATGGGGTCCTTTATTTCAGAAGTCTTGCTATACACTTAAATTATAAGAAACTCCATTTCTTCTGCATCATTCTGGAAGTTCAATGAACAAGTAGATATTCTACTGTACCAAGTGATTTTGATTGTTTTCAATTCATGTGTAATGTATGTTTTTTCGTGTGCAGATTTTACTCCGTCTCGTGGCAGCACTCCAAACTACCAACCCAGAACACAAACAGTTATGAGCAATGTCTTTGTACCTGATAATGTACAGAATTCCAAATCACCTGAACCTTCTCCAACTGGAAGGAGA AAACTAGCCGAGCTC TT GCAGGAGGCGATGCAGAATGGTTCCGAAGATAGCACCGATGCATCTGTTCCAGACATCA GCAAGAATGAGAAGC AGCAATTCC AGC CTGTTTCT GCA GCTGTGAAGCCAGTATCTGAGTCCAGCTCC ] [-] EMBL CB666091 [ ACAAGTAGATATTCTACTGTACCAAGTGATTTTGATTGTTTTCAATTCATGTGTAATGTATGTTTTTTCGTGTGCAGATTTTACTCCGTCTCGTGGCAGCACTCCAAACTACCAACCCAGAACACAAACAGTTATGAGCAATGTCTTTGTACCTGATAATGTACAGAATTCCAAATCACCTGAACCTTCTCCAACTGGAAGGAGA AAACTAGCCGAGCTC TT GCAGGAGGCGATGCAGAATGGTTCCGAAGATAGCACCGATGCATCTGTTCCAGACATCA GCAAGAATGAGAAGC AGCAATTCC AGC CTGTTTCT GCA GCTGTGAAGCCAGTATCTGAGTCCAGCTCCACGTGTAGCAC AGAACCGACGCCGATCAGAGAAGCGAAGAATCGCAAGGAGAAGGCGTGGTACA CC GGTC GCT GTTGCTTGCCGGCTTTTGTTCATACCCTAGACTTAGATGAGAGGAGGCAGAAGATGACCCCTGGGCCTTG T GCTGTTTGACATGGCTGCTTC CCTTCTATGAGC TGTATCTACAATATA CTAC CTGAT CC GGCC CT GAGTTC ACTGT AAAGAAGAC TAGTA TT GAGAGC A CTATATCC T TGTAATAATCAA GTGAATAGTCACTCTTGAGAATTCATGT GCTGTATCCATGTTAAATCAACTGTAAGGTGAGGATATCTAGCT CAAGAAATGATCATT TTGTGCATATCTGGATGAATCTTTATGGATATAAAATTTTCTCAGTTGTCAAT ] [+] EMBL BQ906620 [ CTTCTCCAACTGGAAGGAGATAAACTA CCGAGCTCGTTNGCAGGAGGCGATGCAGAATGGTTCCGAAGATAGCACCGATGCATCTGTTCCAGACATCA GCAAGAATGAGAAGC AGCAATTCC AGC CTATTTCT GCANNCTGTGAAGCCAGTATCTGAGTCCAGCTCCACGTGTAGCAC AGAACCGACGCCGATCAGAGAAGCGAAGAATCGCAAGGAGAAGGCGTGGTACACCC GGTC GCT GTTGCTTGCCGGCTTTTGTTCATACCCTAGACTTAGATGAGAGGAGGCAGAAGATGACCCCTGGGCCTTGCTCGCTGTTTGACATGGCTGCTTC CCTTCTATGAGC TGTATCTAC ATATANCTAC CTGAT CC GGCC CT GAGTTC ACTGT AAAGAAGAC TAGTA TT GAGAGC A CTATATCC T TGTAATAATCAA GTGAATAGTCACTCTTGAGAATTCATGT GCTGTATCCATGTTAAATCAACTGTAAGGTGAGGATATCTAGCTCCAAGAAATGATCATTCTTGTGCAaaa ] [+] EMBL CB097206 [ AAACTAGCCGAGCTC TT GCAGGAGGCGATGCAGAATGGTTCCGAAGATAGCACCGATGCATCTGTTCCAGACATCATGCAAGAATGAGAAGC AGCAATTCC AGC CTATTTCT GCA GCTGTGAAGCCAGTATCTGAGTCCAGCTCCACGTGTAGCAC AGAACCGACGCCGATCAGAGAAGCGAAGAATCGCAAGGAGAAGGCGTGGTACA CC GGTC GCT GTTGCTTGCCGGCTTTTGTTCATACCCTAGACTTAGATGAGAGGAGGCAGAAGATGACCCCTGGGCCTTG T GCTGTTTGACATGGCTGCTTC CCTTCTATGAGC TGTATCTACAATATA CTAC CTGAT CC GGCC CT GAGTTC ACTGT AAAGAAGAC TAGTA TT GAGAGC A CTATATCC T TGTAATAATCAA GTGAATAGTCACTCTTGAGAATTCATGT GCTGTATCCATGTTAAATCAACTGTAAGGTGAGGATATCTAGCT CAAGAAATGATCATT TTGTGCATATCTGGATGAATCTTTATGGATATAA ] [+] EMBL BM418954 [ GAGAACCAACCAATTCCAAGCACTATTTCTGGCA GCTGTGAACCCAGTATCTGAGTCCAGCTCCACGTGTAGCACAAGAACCGACGCCGATCAGAGAAGCGAAGAATCGCAAGGAGAAGGC TGGTACA CCAGGTCAGCT GTTGCTTGCCGGCTTTTGTTCATACCCTAGACTTAGATGAGAGGA GCAGAAGATGACCCCT GGCCTTG T GCTGTTTGACAT GCTGCTTCACCTTCTATGA C TGTATCTACAATATA CTAC CTGAT CC GGCCACT GAGTTC ACTGTAAAAGAAGAC TAGTATTT GAGACC ACCTATATCCAT TGTAATAATCAA GTGAATAGTCACTCTTGAGAATTCATGT CTGTATCCATGTTAAATCAACTGTAAGTTGA GATATNTAGCT CAAGAAATGATCATT TTGTGCATATCTGGATGAATCTTTATGGATATAAAATTTTCTCAAAAA ] [+] EMBL BM418743 [ ccGAGAAGCGAAGAATCGCAAGGAGAAGGCGTGGTACA CC GGTC GCT GTTGCTTGCCGGCTTTTGTTCATACCCTAGACTTAGATGAGAGGAGGCAGAAGATGACCCCTGGGCCTTG T GCTGTTTGACATGGCTGCTTC CCTTCTATGAGC TGTATCTACAATATA CTAC CTGAT CC GGCC CT GAGTTC ACTGT AAAGAAGAC TAGTA TT GAGAGC A CTATATCC T TGTAATAATCAA GTGAATAGTCACTCTTGAGAATTCATGT GCTGTATCCATGTTAAATCAACTGTAAGGTGAGGATATCTAGCT CAAGAAATGATCATT TTGTGCATATCTGGATGAATCTTTATGGATATAAAATTTTCTCAAAAA ] [+] EMBL C99164 [ GGTC GCTGGTTGCTTGCCGGCTTTTGTCCATACCCTAGACTTAGATGAGAGGAGGCAGCAGATGACCCCTGGGCCTTG T GCTGTTTGACATGGCTGCTTC CCTTCTATGAGC TGTATCTACAATATA CTAC CTGAT CC GGCC CT GAGTTC ACTGT AAAGAAGAC TAGTA TT GAGAGC A CTATATCC T TGTAATAATCAA GTGAATAGTCACTCTTGAGAATTCATGT GCTGTATCCATGTTAAATCAACTGTAAGGTGAGGATATCTAGCT CAAGAAATGATCATT TTGTGCATATCTGGATGAATCTTTATGGATATAAAATTTTCTCAAAAA ] [+] EMBL AU082702 [ aTTCTATGAGCNTTGTNTCTACAATATA CTACACTGATACC GGCC CT GAGTTC ACTGT AAAGAAGACNTAGTA TT GAGAGC A CTATATCC TCNGTAATAATCAACGTGAATAGTCACTCTTGAGAATTCATGTNGCTGTATCCATGTTAAATCAACTGTAAGGTGAGGATATCTAGCT CAAGAAATGATCATT TTGTGCATATCTGGATGAATCTTTATGGATATAAAATTTTCTCAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL BI810929 [ CTAC CTGAT CCAGGCCACTGGAGTTCAACTGT AAAGAAGAC TAGTA TTTGGAGAGCAA CTATATCC T TGTAATAATCAA GTGAATAGTCACTCTTGAGAATTCATGT GCTGTATCCATGTTAAATCAACTGTAAGGTGAGGATATCTAGCT CAA ] consensusID : consensus_15606#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 1193 fasta sequence [TAAAGAAACACACTCTCCCACTCTCTCCTCTCCTCTGTCCCTCTTCTTCCTCTTCTCCCAAGAG-CTCTCTCCTCTCTCTCTCTACTCTTCTCTTCTCTCTCCTTTTGTTGCTTCCATTTCTCGTTCTTGCACGGGGAAGAGGAGAGAAAGATGTGTGTCGCTGTGGTTTGAAAAAGGTTGGGTGTGAGAGGAGAGAGAAAGTGGAGTGGAGGGGAGAGAGAGAGAGAGAGATGGGTTCTTGCGCTTCGGTTCACAAGGACCTCGGGTTCCCCAAGAAGCTGTTTCTTGCGTCGTCGCCTACCAAGGAGAAGAAGGCCGCGAACGGG-AAGGGTGGCGGTGGCGGTGTGTCTGTTGATCTCAAGCGAAAGGAGCAGCAGCAGGCGG-CGGCGGCA-GG-GGTTGGCGTC-AGGAGCCCCGGTTCTGGTAGC-AAGGA-TGAAATGTTC-TTTGACTCGCGGGCATGGTT-AGATTCTGATTGCGAGGACGACTTCTACAGTGTGAATGGAGATTTTAC-TCCGTCTCGTGGCAGCACTCCAAACTACCAACCCAGAACACAAACAGTTATGAGCAATGTCTTTGTACCTGATAATGTACAGAATTCCAAATCACCTGAACCTTCTCCAACTGGAAGGAGAAAACTAGCCGAGCTCTTGCAGGAGGCGATGCAGAATGGTTCCGAAGATAGCACCGATGCATCTGTTCCAGACATCAGCAAGAATGAGAAGCAGCAATTCCAGCCTGTTTCTGCAGCTGTGAAGCCAGTATCTGAGTCCAGCTCC-ACGTGTAGCACAGAA-CCGACGCCGATCAGAGAAGCGAAG-AATCG-CAAGGAGAA-GGCGTGGTACACCGGTCGCTGTTGCTTGCCGGCTTTTGTTCA-TACCCTAGACTTAGATGAGAGGAGGCAGAAGATGA-CCCCTGGGCC-TTGTGCTGTTTGACATGGCTGCTTCCCTTCTATGAGCTGTATC-TACAA-TATACTACCTGATCCGGCCCTGAGTTCACTGTAAAGAAGACTAGTA-TTGAGAGCACTATATCCTTGTAATAATCAAGTGAATAGTCACTCTTGAGAATTCATGTGCTGTATCCATGTTAAATCAACTGTAAGGTGAGGATATCTAGCTCAAGAAATGATCATTTTGTGCATATCTGGATGAATCTTTATG-GATATAAAATTTTCTCAGTTGTCAATTTTGTAATCAAAAAAA] [+] EMBL CF314936 [TAAAGAAACACACTCTCCCACTCTCTCCTCTCCTCTGTCCCTCTTCTTCCTCTTCTCCCAAGAG CTCTCTCCTCTCTCTCTCTACTCTTCTCTTCTCTCTCCTTTTGTTGCTTCCATTTCTCGTTCTTGCACGGGGAAGAGGAGAGAAAGATGTGTGTCGCTGTGGTTTGAAAAAGGTTGGGTGTGAGAGGAGAGAGAAAGTGGAGTGGAGGGGAGAGAGA AGA AAAAAGGGTTTCTTGCGCTTCGGTTCACAAGGACCTCGGGTTCCCCAAGAAGCTGTTTCTTGCGTCGTCGCCTACCAAGGAGAAGAAGGCCGCGAACGGG AAGGGTGGCGGTGGCGGTGTGTCTGTTGATCTCAAGCGAAAGGAGCAGCAGCAGGCGG CGGCGG A GG GGTTGGCGTC AGGAGCCCCGGTTCTGGTAGC AAGGA TGAAATGTTC TTTGACTCGCGGGCATGGTT AGATTCTGATTGCGAGGACGACTTCTACAGTGTGAATGGAGA TTTAC TCCGTCTCGTGGCAGCACTCCAAACTACCAACCCAGAACACAAACAGTTATGAGCAATGTCTTTGTACCTGATAATGTACAGAATTCCAAATCACC ] [+] EMBL BE228875 [ ttcggCACGAGACTCTCTCCTCTCTCTCTCTACTCTTCTCTTCTCTCTCCTTTTGTTGCTTCCATTTCTCGTTCTTGCACGGGGAAGANGAGAGAAAGATGTGTGTCG ] [+] EMBL AK069808 [ CTCCTCTCTCTCTCTACTCTTCTCTTCTCTCTCCTTTTGTTGCTTCCATTTCTCGTTCTTGCACGGGGAAGAGGAGAGAAAGATGTGTGTCGCTGTGGTTTGAAAAAGGTTGGGTGTGAGAGGAGAGAGAAAGTGGAGTGGAGGGGAGAGAGAGAGAGAGAGATGGGTTCTTGCGCTTCGGTTCACAAGGACCTCGGGTTCCCCAAGAAGCTGTTTCTTGCGTCGTCGCCTACCAAGGAGAAGAAGGCCGCGAACGGG AAGGGTGGCGGTGGCGGTGTGTCTGTTGATCTCAAGCGAAAGGAGCAGCAGCAGGCGG CGGCGGCA GG GGTTGGCGTC AGGAGCCCCGGTTCTGGTAGC AAGGA TGAAATGTTC TTTGACTCGCGGGCATGGTT AGATTCTGATTGCGAGGACGACTTCTACAGTGTGAATGGAGATTTTAC TCCGTCTCGTGGCAGCACTCCAAACTACCAACCCAGAACACAAACAGTTATGAGCAATGTCTTTGTACCTGATAATGTACAGAATTCCAAATCACCTGAACCTTCTCCAACTGGAAGGAGAAAACTAGCCGAGCTCTTGCAGGAGGCGATGCAGAATGGTTCCGAAGATAGCACCGATGCATCTGTTCCAGACATCAGCAAGAATGAGAAGCAGCAATTCCAGCCTGTTTCTGCAGCTGTGAAGCCAGTATCTGAGTCCAGCTCC ACGTGTAGCACAGAA CCGACGCCGATCAGAGAAGCGAAG AATCG CAAGGAGAA GGCGTGGTACACCGGTCGCTGTTGCTTGCCGGCTTTTGTTCA TACCCTAGACTTAGATGAGAGGAGGCAGAAGATGA CCCCTGGGCC TTGTGCTGTTTGACATGGCTGCTTCCCTTCTATGAGCTGTATC TACAA TATACTACCTGATCCGGCCCTGAGTTCACTGTAAAGAAGACTAGTA TTGAGAGCACTATATCCTTGTAATAATCAAGTGAATAGTCACTCTTGAGAATTCATGTGCTGTATCCATGTTAAATCAACTGTAAGGTGAGGATATCTAGCTCAAGAAATGATCATTTTGTGCATATCTGGATGAATCTTTATG GATATA ] [+] EMBL CF325596 [ CTCTCTCTACTCTTCTCTTCTCTCTCCTTTTGTTGCTTCCATTTCTCGTTCTTGCACGGGGAAGAGGAGAGAAAGATGTGTGTCGCTGTGGTTTGAAAAAGGTTGGGTGTGAGAGGAGAGAGAAAGTGGAGTGGAGGGGAGAGAGAGAGAGAGAGATGGGTTCTTGCGCTTCGGTTCACAAGGACCTCGGGTTCCCCAAGAAGCTGTTTCTTGCGTCGTCGCCTACCAAGGAGAAGAAGGCCGCGAACGGG AAGGGTGGCGGTGGCGGTGTGTCTGTTGATCTCAAGCGAAAGGACCAGCAGCAGGCGG CGGCGGCA GG GGTTGGCGTC AGGAGCCCCGGCTCTGGTACC AAGGA TGAAATGTTC TTTGACTCGCGGGCATGGT ] [+] EMBL C26849 [ tnntntgnTTGCTTCCATTTCTCGTTCTTGCACGGGGAAGAGGAGAGAAAGATGTGTGTCGCTGTGGTTTGAAAAAGGTTGGGTGTGANAGGAGAGAGAAAGTGGAGTGGAGGGGAGAGAGAGAGAGAGAGATGGGTTCTTNCNCTTCGGTTCACAAGGACCTCGGGTTCCCCAAGAAGCTGTTTCTTGCGTCGTCGNCTACCAAGGAGAAGAAGGCCGCGAACGGG AAGGGTGGCGGTGGCGGTGTGTCTGTTGATCTCAAGCGAAAGGAGCAGCAGCAGGCNG CG ] [+] EMBL OSC381 [ CTTCCATTTCTCGTTCTTGCACGGGGAAGAGGAGAGAAAGATGTGTGTCGCTGTGGTTTGAAAAAGGTTGGGTGTGAGAGGAGAGAGAAAGTGGAGTGGAGGGGAGAGAGAGAGAGAGAGATGGGTTCTTGCGCTTCGGTTCACAAGGACCTCGGGTTCCCCAAGAAGCTGTTTCTTGCGTCGTCGCCTACCAAGGAGAAGAAGGCCGCGAACGGGAAAGGGTGGCGGTGGCGGTATGTCTGTTGATCTCAAGCGAAAGGAGCAGCAGCAGGCGGNCGGCGGCAGGG GGTTGGCGTC AGGAGCCCCGGTTCTGGTAGCAAAGGA TGAAATGTTCTTTTAACTCGCGGGCATGGTTAAGATTCTNATTGCAAAGACGACTTCTACAGTGTTAATGGNGATTTTACTTCCGTCTC ] [+] EMBL C73419 [ TTCTCGTTCTTGCACGGGGAAGAGGAGAGAAAGATGTGTGTCGCTGTGGTTTNAAAAAGGTTGGGTGTGAGAGGAGAGAGAAAGTGGAGTGGAGGGGAGAGAGAGAGAGAGAGATGGGTTCTTGCGCTTCGGTTCACAAGGACCTCGGGTTCCCCAAGAAGCTGTTTCTTGCGTCGTCGCCTACCAAGGAGANGAAGGCCGCGAACGGG AAGGGTNGCGNTGGCGGTGTGTCTNTTGATCTCAAGCGAAAGGAGCAGCAGCAGGCGG CGGCGNCA GGCTGTTGGCGTCAAAGAGCCCCGGTTCTGGTAGC ANGGATTGAAATGTTC TTTGACTCGCGGGCATGGTTAAGATTCTGATTNCGAGGACGACTTCTACAGTGTGAATGGAGA ] [+] EMBL OSR25081A [ CGGGGAAGAGGAGAGAAAGATGTGTGTCGCTGTGGTTTGAAAAAGGTTGGGTGTGAGAGGAGAGAGAAAGTGGAGTGGAGGGGAGAGAGAGAGAGAGAGATGGGTTCTTGCGCTTCGGTTCACAAGGACCTCGGGTTCCCCAAGAAGCTGTTTCTTGCGTCGTCGCCTACCAAGGAGAAGAAGGCCGCGAACGGG AAGGGTGGCGGTGGCGGTGTGTCTGTTGATCTCAAGCGAAAGGAGCAGCAGCAGGCGG CGGCGGCA GG GGTTGGCGTC AGGAGCCCCGGTTCTGGTAGC AAGGA TGAAATGTTC TTTGACTCGCGGGCATGGTT AGATTCTGATTGCGAGGACGACTTCTACAGTGTGAATGGAGATTTTAC TCCGTCTCG ] [+] EMBL CA756277 [ GAGAGAGAGATGGGTTCTTGCGCTTCGGTTCACAAGGACCTCGGGTTCCCCAAGAAGCTGTTTCTTGCGTCGTCGCCTACCAAGGAGAAGAAGGCCGCGAACGGG AAGGGTGGCGGTGGCGGTGTGTCTGTTGATCTCAAGCGAAAGGAGCAGCAGCAGGCGG CGGCGGCA GG GGTTGGCGTC AGGAGCCCCGGTTCTGGTAGC AAGGA TGAAATGTTC TTTGACTCGCGGGCATG ] [-] EMBL CF314937 [ GAGCTCTTGCAGGAGGCGATGCAGAATGGTTCCGAAGATAGCACCGATGCATCTGTTCCAGACATCAGCAAGAATGAGAAGCAGCAATTCCAGCCTGTTTCTGCAGCTGTGAAGCCAGTATCTGAGTCCAGCTCCNACGTGTAGCACGGAACCCGACGCCGATCAGAGAAGCGAAG AATCG CAAGGAGAA GGCGTGGTACACCGGTCGCTGTTGCTTGCCGGCTTTTGTTCA TACCCTAGACTTAGATGAGAGGAGGCAGAAGATGA CCCCTGGGCC TTGTGCTGTTTGACATGGCTGCTTCCCTTCTATGAGCTGTATC TACAA TATACTACCTGATCCGGCCCTGAGTTCACTGTAAAGAAGACTAGTA TTGAGAGCACTATATCCTTGTAATAATCAAGTGAATAGTCACTCTTGAGAATTCATGTGCTGTATCCATGTTAAATCAACTGTAAGGTGAGGATATCTAGCTCAAGAAATGATCATTTTGTGCATATCTGGATGAATCTTTATG GATATAAAATTTTCTCAGTTGTCAATTTTGTAATCAAAAAAA] [+] EMBL BQ907106 [ TGAAGCCAGTATCTGAGTCCAGCTCC ACGTGTAGCACAGAA CCGACGCCGATCAGAGAAGCGAAGTAATCGTCAAGGAGAATGGCGTGGTACACCGGTCGCTGTTGCTTGCCGGCTTTTGTTCAGTACCCTAGACTTAGATGAGAGGAGGCAGAAGATGAGCCCCTGGGCCATTGTGCTGTTTGACATGGCTGCTTCCCTTCTATGAGCTGTATCTTACAAGTATACTACCTGATCCGGCCCTGAGTTCACTGTAAAGAAGACTAGTACTTGAGAGCACTATATCCTTGTAATAATCAAGTGAATAGTCACTCTTGAGAATTCATGTGCTGTATCCATGTTAAATCAACTGTAAGGTGAGGATATCTAGCTCAAGAAATGATCATTTTGTGCATATCTGGATGAATCTTTATGCNATATAAAATTTTCTCAGTTGTCAAaaaaa ] [+] EMBL AU181531 [ AGTATCTGAGTCCAGCTCC ACGTGTAGCACAGAA CCGACGCCGATCAGAGAAGCGAAG AATCG CAAGGAGAA GGCGTGGTACACCGGTCGCTGTTGCTTGCCGGCTTTTGTTCA TACCCTAGACTTAGATGAGAGGAGGCAGAAGATGA CCCCTGGGCC TTGTGCTGTTTGACATGGCTGCTTCCCTTCTATGAGCTGTATC TACAA TATACTACCTGATCCGGCCCTGAGTTCACTGTAAAGAAGACTAGTA TTGAGAGCACTATATCCTTGTAATAATCAAGTGAATAGTCACTCTTGAGAATTCATGTGCTGTATCCATGTTAAATCAACTGTAAGGTGAGGATATCTAGCTCAAGAAATGATCATTTTGTGCATATCTGGATGAATCTTTATG GATATAAAATTTTCTCAGTTGTCAATTTTGTAATCAAAAA ] consensusID : consensus_15606#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 519 fasta sequence [TTTTTTTTTTGGCGGACGCGTGGGCGGACGCGTGGGGTTCTTGCGCTTCGGTTCACAAGGACCTCGGGTTCCCCAAGAAGCTGGTTTCTGTGCGTCGTCGCCTACCAAGGAGAAGAAGGCCGCGAACGGGAAGGGTGGCGGTGGCGGTGTGTCTGTTGATCTCAAGCGAAAGGAGCAGCAGCAGGCGGCGGCGGCAGGGGTTGGCGTCAGGAGCCCCGGTTCTGGTAGCAAGGATGAAATGTTCTTTGACTCGCGGGCATGGTTAGATTCTGATTGCGAGGACGACTTCTACAGGTGTGAATGGAGATTTTACTCCGGTCTCGGTGGCAGCACTCCAAACTACCAACCCAGAACACAAACAGTTATGAGCAAGGTCTTGGTACCTGATAATGTACAGAATTCCAAATCACCGTGAACCTTCTCCAACGGGAAGGAGAAAACTAGCCGAGCTCTTGCAGGAGGCGATGCAGAAGGGTTCCGAAGATAGCACCGATGCATCTGTGTCCAGACATCAGCAGA] [-] EMBL BM418714 [TTTTTTTTTTGGCGGACGCGTGGGCGGACGCGTGGGGTTCTTGCGCTTCGGTTCACAAGGACCTCGGGTTCCCCAAGAAGCTGGTTTCTGTGCGTCGTCGCCTACCAAGGAGAAGAAGGCCGCGAACGGGAAGGGTGGCGGTGGCGGTGTGTCTGTTGATCTCAAGCGAAAGGAGCAGCAGCAGGCGGCGGCGGCAGGGGTTGGCGTCAGGAGCCCCGGTTCTGGTAGCAAGGATGAAATGTTCTTTGACTCGCGGGCATGGTTAGATTCTGATTGCGAGGACGACTTCTACAGGTGTGAATGGAGATTTTACTCCGGTCTCGGTGGCAGCACTCCAAACTACCAACCCAGAACACAAACAGTTATGAGCAAGGTCTTGGTACCTGATAATGTACAGAATTCCAAATCACCGTGAACCTTCTCCAACGGGAAGGAGAAAACTAGCCGAGCTCTTGCAGGAGGCGATGCAGAAGGGTTCCGAAGATAGCACCGATGCATCTGTGTCCAGACATCAGCAGA] consensusID : consensus_15606#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 290 fasta sequence [TNTNTNATTGCTTCCATTTCTCGTTCTTGTNAGGCAGAAGAGGAGAGAAAGATGTGTGTCGCTGTGGTTTGAAAAAGGTTGGGTGTNANAGGAGAGAGAAAGTGGAGTGGAGGGGAGAGAGAGAGAGAGAGATGGGTTCTTGCGCTTCGGTTCACAAGGACCTCGGGTTCCCCAAGAAGCTGTTTCTTGCGTCGTCGCCTACCAAGNAGAAGAAGGCCGCGACCGGNAAGGGTTGGCGTTGCCGTNTGTCTTTTGTTCNAAGCGAAAGAGCAGCANAAGCGGCCGCGGCA] [+] EMBL C26998 [TNTNTNATTGCTTCCATTTCTCGTTCTTGTNAGGCAGAAGAGGAGAGAAAGATGTGTGTCGCTGTGGTTTGAAAAAGGTTGGGTGTNANAGGAGAGAGAAAGTGGAGTGGAGGGGAGAGAGAGAGAGAGAGATGGGTTCTTGCGCTTCGGTTCACAAGGACCTCGGGTTCCCCAAGAAGCTGTTTCTTGCGTCGTCGCCTACCAAGNAGAAGAAGGCCGCGACCGGNAAGGGTTGGCGTTGCCGTNTGTCTTTTGTTCNAAGCGAAAGAGCAGCANAAGCGGCCGCGGCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15606#1 ------------------------------TAAAGAAACACACTCTCCCACTCTCTCCTC 30 consensus_15606#3 ------------------------------------------------------------ consensus_15606#2 ------------------------------------------------------------ consensus_15606#0 GGGCATGGTTAGATTCTGATTGCGAGGACGACTTCTACAGTGTGAATGGAGGTAATCTAA 60 consensus_15606#1 TCCTCTGTCCCTCTTCTTCCTCTTCTCCCAAGAGCTCTCTCCTCTCTCTCTCTACTCTTC 90 consensus_15606#3 ------------------------------------------------------------ consensus_15606#2 ------------------------------------------------------------ consensus_15606#0 TGATGCAGAGTAAATAGGTTCCTTCTCACTGGCATGTCTGTAGTGCCAGTGCCTTGTTCA 120 consensus_15606#1 TCTTCTCTCTCCTTTTGTTGCTTCCATTTCTCGTTCTTGCACGG-GGAAG----AGGAGA 145 consensus_15606#3 ----------TNTNTNATTGCTTCCATTTCTCGTTCTTGTNAGGCAGAAG----AGGAGA 46 consensus_15606#2 ------------------------------------------------------------ consensus_15606#0 TGCTGTTTCCTTTTCAAGTCTATCCTATTATTGTATCAGTAGCATACTAGCATGAGGCCT 180 consensus_15606#1 GAAAGATGTGTGTCGCTGTGGTTTGAAAAAGGTTGGGTGTGAGAGGAGAGAGAAAGTGGA 205 consensus_15606#3 GAAAGATGTGTGTCGCTGTGGTTTGAAAAAGGTTGGGTGTNANAGGAGAGAGAAAGTGGA 106 consensus_15606#2 -----------------------------------------------------TTTTTTT 7 consensus_15606#0 GTTCTTTTTGTTTAGTCCAAATTGCATGTGCGCTGATTGATTTGGTGATGATACAGTTTT 240 * consensus_15606#1 GTGGA-----GGGGAGAGAGAGAGAGAGAGATGGGTTCTT-----GCGCTTCGGTTCACA 255 consensus_15606#3 GTGGA-----GGGGAGAGAGAGAGAGAGAGATGGGTTCTT-----GCGCTTCGGTTCACA 156 consensus_15606#2 TTTGG-----CGGACGCGTGGGCGGACGCGTGGGGTTCTT-----GCGCTTCGGTTCACA 57 consensus_15606#0 ATCTGTCTCTCTGGATTCTAAGGGGCTTATTTTAGCCCTTTGATTGCTTGTTGAGACAAA 300 * * * * * *** ** * * ** * consensus_15606#1 AGG-----ACCTCGGGTTCCC--------CAAGAAGCTG-TTTCT-TGCGTCGTCGCCTA 300 consensus_15606#3 AGG-----ACCTCGGGTTCCC--------CAAGAAGCTG-TTTCT-TGCGTCGTCGCCTA 201 consensus_15606#2 AGG-----ACCTCGGGTTCCC--------CAAGAAGCTGGTTTCTGTGCGTCGTCGCCTA 104 consensus_15606#0 AGGTTGAGGCCTTTGATTTCGTCTTTTGGCATTATCATGTTTCTAGCATCTAATAATCTG 360 *** *** * ** * ** * ** ** * * ** consensus_15606#1 CCAAGGAGAAGAAGGCCGCGAACGGGAAG---GGTGGCGGTGGCGGTGTG--TCTGTTGA 355 consensus_15606#3 CCAAGNAGAAGAAGGCCGCGACCGGNAAG---GGTTGGCGTTGCCGTNTG--TCTTTTGT 256 consensus_15606#2 CCAAGGAGAAGAAGGCCGCGAACGGGAAG---GGTGGCGGTGGCGGTGTG--TCTGTTGA 159 consensus_15606#0 TTAGCTGCATTGGACCCCCCACCTTTAACTTCGGTTACCTATTCCATGGGGTCCTTTATT 420 * * ** * * * ** *** * * * ** * consensus_15606#1 TCTCAAGCGAAAGGAGCAGCAGCAGGCGGCGGCGGCAGGGGTTGGCGTCAGGAGCCCCGG 415 consensus_15606#3 TCN-AAGCGAAAG-AGCAGCAN-AAGCGGCCGCGGCA----------------------- 290 consensus_15606#2 TCTCAAGCGAAAGGAGCAGCAGCAGGCGGCGGCGGCAGGGGTTGGCGTCAGGAGCCCCGG 219 consensus_15606#0 TCAGAAGTCTTGCTATACACTTAAATTATAAGAAACTCCATTTCTTCTGCATCATTCTGG 480 ** *** * * * * * consensus_15606#1 TTCTGGTAGCAAGGATGAAATGTTCTTTGACTCGCGGGCATGGTTAG-ATTCTGATTGCG 474 consensus_15606#3 ------------------------------------------------------------ consensus_15606#2 TTCTGGTAGCAAGGATGAAATGTTCTTTGACTCGCGGGCATGGTTAG-ATTCTGATTGCG 278 consensus_15606#0 AAGTTCAATGAACAAGTAGATATTCTACTGTACCAAGTGATTTTGATTGTTTTCAATTCA 540 consensus_15606#1 AGGACGACTTCTACAGTGTGAATGGAGATTTTACTCCGTCTCGTGGCAGCACTCCAAACT 534 consensus_15606#3 ------------------------------------------------------------ consensus_15606#2 AGGACGACTTCTACAGGTGTGAATGGAGATTTTACTCCGGTCTCGGTGGCAGCACTCCAA 338 consensus_15606#0 TGTGTAATGTATGTTTTTTCGTGTGCAGATTTTACTCCG--TCTCGTGGCAGCACTCCAA 598 consensus_15606#1 ACCAACCCAGAACACAAACAGTTATGAGCAATGTCTTTGTACCTGATAATGTACAGAATT 594 consensus_15606#3 ------------------------------------------------------------ consensus_15606#2 ACTACCAACCCAGAACACAAACAGTTATGAGCAAGGTCTTGGTACCTGATAATGTACAGA 398 consensus_15606#0 ACTACCAACCCAGAACACAAACAGTTATGAGCAATGTCTTTGTACCTGATAATGTACAGA 658 consensus_15606#1 CCAAATCACCTGAACCTTCTCCAACTGGAAGGAGAAAACTAGCCGAGCTCTTGCAGGAGG 654 consensus_15606#3 ------------------------------------------------------------ consensus_15606#2 ATTCCAAATCACCGTGAACCTTCTCCAACGGGAAGGAGAAAACTAGCCGAGCTCTTGCAG 458 consensus_15606#0 ATTCCAAATCACC-TGAACCTTCTCCAACTGGAAGGAGAAAACTAGCCGAGCTCTTGCAG 717 consensus_15606#1 CGATGCAGAATGGTTCCGAAGATAGCACCGATGCATCTGTTCCAGACATCAGCAAGAATG 714 consensus_15606#3 ------------------------------------------------------------ consensus_15606#2 GAGGCGATGCAGAAGGGTTCCGAAGATAGCACCGATGCATCTGTGTCCAGACATCAGCAG 518 consensus_15606#0 GAGGCGATGCAGAATGGTTCCGAAGATAGCACCGATGCATCTGT-TCCAGACATCAGCAA 776 consensus_15606#1 AGAAGCAGCAATTCCAGCCTGTTTCTGCAGCTGTGAAGCCAGTATCTGAGTCCAGCTCCA 774 consensus_15606#3 ------------------------------------------------------------ consensus_15606#2 A----------------------------------------------------------- 519 consensus_15606#0 GAATGAGAAGCAGCAATTCCAGCCTATTTCTGCAGCTGTGAAGCCAGTATCTGAGTCCAG 836 consensus_15606#1 CGTGTAGCACAGAACCGACGCCGATCAGAGAAGCGAAGAATCGCAAGGAGAAGGCGTGGT 834 consensus_15606#3 ------------------------------------------------------------ consensus_15606#2 ------------------------------------------------------------ consensus_15606#0 CTCCACGTGTAGCACAGAACCGACGCCGATCAGAGAAGCGAAGAATCGCAAGGAGAAGGC 896 consensus_15606#1 ACACCGGTCGCTGTTGCTTGCCGGCTTTTGTTCATACCCTAGACTTAGATGAGAGGAGGC 894 consensus_15606#3 ------------------------------------------------------------ consensus_15606#2 ------------------------------------------------------------ consensus_15606#0 GTGGTACACCGGTCGCTGTTGCTTGCCGGCTTTTGTTCATACCCTAGACTTAGATGAGAG 956 consensus_15606#1 AGAAGATGACCCCTGGGCCTTGTGCTGTTTGACATGGCTGCTTCCCTTCTATGAGCTGTA 954 consensus_15606#3 ------------------------------------------------------------ consensus_15606#2 ------------------------------------------------------------ consensus_15606#0 GAGGCAGAAGATGACCCCTGGGCCTTGTGCTGTTTGACATGGCTGCTTCCCTTCTATGAG 1016 consensus_15606#1 TCTACAATATACTACCTGATCCGGCCCTGAGTTCACTGTAAAGAAGACTAGTATTGAGAG 1014 consensus_15606#3 ------------------------------------------------------------ consensus_15606#2 ------------------------------------------------------------ consensus_15606#0 CTGTATCTACAATATACTACCTGATCCGGCCCTGAGTTCACTGTAAAGAAGACTAGTATT 1076 consensus_15606#1 CACTATATCCTTGTAATAATCAAGTGAATAGTCACTCTTGAGAATTCATGTGCTGTATCC 1074 consensus_15606#3 ------------------------------------------------------------ consensus_15606#2 ------------------------------------------------------------ consensus_15606#0 GAGAGCACTATATCCTTGTAATAATCAAGTGAATAGTCACTCTTGAGAATTCATGTGCTG 1136 consensus_15606#1 ATGTTAAATCAACTGTAAGGTGAGGATATCTAGCTCAAGAAATGATCATTTTGTGCATAT 1134 consensus_15606#3 ------------------------------------------------------------ consensus_15606#2 ------------------------------------------------------------ consensus_15606#0 TATCCATGTTAAATCAACTGTAAGGTGAGGATATCTAGCTCAAGAAATGATCATTTTGTG 1196 consensus_15606#1 CTGGATGAATCTTTATGGATATAAAATTTTCTCAGTTGTCAATTTTGTAATCAAAAAAA- 1193 consensus_15606#3 ------------------------------------------------------------ consensus_15606#2 ------------------------------------------------------------ consensus_15606#0 CATATCTGGATGAATCTTTATGGATATAAAATTTTCTCAAAAATCAATAAAAAAAAAAAA 1256 consensus_15606#1 - consensus_15606#3 - consensus_15606#2 - consensus_15606#0 A 1257 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||