These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15608#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 21 consensus length = 1707 fasta sequence [TATTAAAAAAAAATCCACATAAACCCTCGCTTCCGAAAAAACCCGCATCGCCGCGCGGAGCAAAGCAGAGAGGGGGAGGAAGCCGCCGCCGCCGCCGCCGCCGCCGCCGCACGGCGGGA-T-GGAGTCGACGCCGGAGCCGGAGGACGGGAGGGAGCTCTACGCGCTGCTCCACCTCTCGCCGGACGCCTCCGGGGAGGAAATCCGCCGGGCTTACCGCCAGTACGCGCAAATCTACCACCCCGACAAGTACCAGGACCCCCAGATGAAGGATGTGGCAACTGAAAACTTCCAACGAATACGTGATGCATATGAGATACTATCAGATGAGAACAAGAGGCAGATATATGACATCTATGGTATGGAAGGTTTAAATTCTGGCCTGGAAC-TTGGCCCCAAGCTAAACAAACCAGAGGAAATCAAAGAACAG-TTGGAACGGC-TGAAGCGG-CGCAA-GGAAGAAGAGAAATTTTTAGCCCATGCTCGACCCACTGGCTCAATAATTGCTAATTTTTCCGTGCCACAGTATTTAGATGGCTATGGAATCATGAGAGGCATGGGAATGTCCAGTGAAGTTCAGTTGCCAGTGTCCAAGAAAAATACTGTTGTTGTTGGTGGAAATTT-GGTTGTCAATGGCACAGATGGAACTGGTGCAGCAAGCGCTGTGCTGCGTCACCAGTTGTCTTCTG-TGGCATCAGTAGAG-TTTATGGCTACAGCTGGACTACGTTCCCTTATTAGCG-TACAAACATTTCGTCAAATTTCACCACATTCGACAGCAACATCTGGACTTGCTCTTTCTTTG-AGAGATGGATCTATCAATCTATCAAATGCCTGGACTCGCCAACTATCTGACAATATTGTTGGGAATATACAGCTTGCCCTTGGTACAGACTCAAGTATTTCTGTTGGATGGCAAAAGAAGGATGAAAAAAATTCTGCAGCAGGGGATGTGAAGCTTGGTACTAATTATTTTGGTGCATCTGCTCATTACACCCGTTATTTCTCCACCAAGTCTCATGGTCGCGTTGCTGGTCGAGTTGGAAGCACGGCCCTTGATTTTGAAATTGGAGGAGGAAGGCGGATATCTGAGTTCAGTACTGTAAGGATGATCTATAATATAGGAATCCAGGGGGTCTCTTGGAGATTCGAGTTGCATCGTGCTGGTCAAAAATTAGTTATCCCAGTTTTGCTTTCAACTGATTTCAATGCATTACTTGCTACCAGCGTTTTTGCTATTCCTTCAACACTATATTTTCTACTTCAGACGTATTTTGTAAAGCCATACTGTCTTAAGCGGGAAAAGCAGAAGGAACTTGAAAAAATGGAAAGTTTGTCTTCACAGCTAACTGAAGCCAGACGCGCAGCGAAAAAAGCA-CAAAAGTTACTAGAACCTGTCTCAAATCGTAAGAAGAATAGACAGCTGGAGGATGATGGCTTGGTGATTACAAAAGCTCTGTATGGGAATCGCAAAAAAGTTAAAGAGAGCAGCGAATCAAATGAGTTGAATGATGATGTGGCTTCGCAAGTATTAGACGTGACCATCCCACTGAACTTCCTCGTCTCTGAGGCAGGCCAGCTAAAGCTTCATGAGGGGATCAAGAAGTCTGGAATAATGGGCTTCTACGATCCTTGCCCTGGTGATCCAAAGCTGTTACTTGTAGAATACACATTTCATGGTCAGAAATACAAGGTCATGGTAGATGATTACGCTGC] [+] EMBL AU067953 [TATTAAAAAAAAATCCACATAAACCCTCGCTTCCGAAAAAACCCGCATCGCCGCGCGGAGCAAAGCAGAGAGGGGGAGGAAGCCGCCGCCGCCGCCGCCGCCGCCGCCGCACGG GNGANT GGAGTCGACGCCGGAGCCGGAGGACGGGAGGGAGCTCTACGCGCTGCTCCACCTCTCGCCGGACGCCTCCGGGGAGGAAATCCGCCGGGCTTACCGCCAGTACGCGCAAATCTACCACCCCGACAAGTACCAGGACCCCCAGATGAAGGATGTGGCAACTGAAAACTTCCAACGAATACGTGATGCATATGAGATACTATCAGATGAGAACAAGAGGCAGATATATGACATCTATGGTATGGAAGGTTT ] [+] EMBL AK061575 [ AAAAATCCACATAAACCCTCGCTTCCGAAAAAACCCGCATCGCCGCGCGGAGCAAAGCAGAGAGGGGGAGGAAGCCGCCGCCGCCGCCGCCGCCGCCGCCGCACGGCGGGA T GGAGTCGACGCCGGAGCCGGAGGACGGGAGGGAGCTCTACGCGCTGCTCCACCTCTCGCCGGACGCCTCCGGGGAGGAAATCCGCCGGGCTTACCGCCAGTACGCGCAAATCTACCACCCCGACAAGTACCAGGACCCCCAGATGAAGGATGTGGCAACTGAAAACTTCCAACGAATACGTGATGCATATGAGATACTATCAGATGAGAACAAGAGGCAGATATATGACATCTATGGTATGGAAGGTTTAAATTCTGGCCTGGAAC TTGGCCCCAAGCTAAACAAACCAGAGGAAATCAAAGAACAG TTGGAACGGC TGAAGCGG CGCAA GGAAGAAGAGAAATTTTTAGCCCATGCTCGACCCACTGGCTCAATAATTGCTAATTTTTCCGTGCCACAGTATTTAGATGGCTATGGAATCATGAGAGGCATGGGAATGTCCAGTGAAGTTCAGTTGCCAGTGTCCAAGAAAAATACTGTTGTTGTTGGTGGAAATTT GGTTGTCAATGGCACAGATGGAACTGGTGCAGCAAGCGCTGTGCTGCGTCACCAGTTGTCTTCTG TGGCATCAGTAGAG TTTATGGCTACAGCTGGACTACGTTCCCTTATTAGCG TACAAACATTTCGTCAAATTTCACCACATTCGACAGCAACATCTGGACTTGCTCTTTCTTTG AGAGATGGATCTATCAATCTATCAAATGCCTGGACTCGCCAACTATCTGACAATATTGTTGGGAATATACAGCTTGCCCTTGGTACAGACTCAAGTATTTCTGTTGGATGGCAA ] [+] EMBL AK066499 [ CCTCGCTTCCGAAAAAACCCGCATCGCCGCGCGGAGCAAAGCAGAGAGGGGGAGGAAGCCGCCGCCGCCGCCGCCGCCGCCGCCGCACGGCGGGA T GGAGTCGACGCCGGAGCCGGAGGACGGGAGGGAGCTCTACGCGCTGCTCCACCTCTCGCCGGACGCCTCCGGGGAGGAAATCCGCCGGGCTTACCGCCAGTACGCGCAAATCTACCACCCCGACAAGTACCAGGACCCCCAGATGAAGGATGTGGCAACTGAAAACTTCCAACGAATACGTGATGCATATGAGATACTATCAGATGAGAACAAGAGGCAGATATATGACATCTATGGTATGGAAGGTTTAAATTCTGGCCTGGAAC TTGGCCCCAAGCTAAACAAACCAGAGGAAATCAAAGAACAG TTGGAACGGC TGAAGCGG CGCAA GGAAGAAGAGAAATTTTTAGCCCATGCTCGACCCACTGGCTCAATAATTGCTAATTTTTCCGTGCCACAGTATTTAGATGGCTATGGAATCATGAGAGGCATGGGAATGTCCAGTGAAGTTCAGTTGCCAGTGTCCAAGAAAAATACTGTTGTTGTTGGTGGAAATTT GGTTGTCAATGGCACAGATGGAACTGGTGCAGCAAGCGCTGTGCTGCGTCACCAGTTGTCTTCTG TGGCATCAGTAGAG TTTATGGCTACAGCTGGACTACGTTCCCTTATTAGCG TACAAACATTTCGTCAAATTTCACCACATTCGACAGCAACATCTGGACTTGCTCTTTCTTTG AGAGATGGATCTATCAATCTATCAAATGCCTGGACTCGCCAACTATCTGACAATATTGTTGGGAATATACAGCTTGCCCTTGGTACAGACTCAAGTATTTCTGTTGGATGGCAAAAGAAGGATGAAAAAAATTCTGCAGCAGGGGATGTGAAGCTTGGTACTAATTATTTTGGTGCATCTGCTCATTACACCCGTTATTTCTCCACCAAGTCTCATGGTCGCGTTGCTGGTCGAGTTGGAAGCACGGCCCTTGATTTTGAAATTGGAGGAGGAAGGCGGATATCTGAGTTCAGTACTGTAAGGATGATCTATAATATAGGAATCCAGGGGGTCTCTTGGAGATTCGAGTTGCATCGTGCTGGTCAAAAATTAGTTATCCCAGTTTTGCTTTCAACTGATTTCAATGCATTACTTGCTACCAGCGTTTTTGCTATTCCTTCAACACTATATTTTCTACTTCAGACGTATTTTGTAAAGCCATACTGTCTTAAGCGGGAAAAGCAGAAGGAACTTGAAAAAATGGAAAGTTTGTCTTCACAGCTAACTGAAGCCAGACGCGCAGCGAAAAAAGCA CAAAAGTTACTAGAACCTGTCTCAAATCGTAAGAAGAATAGACAGCTGGAGGATGATGGCTTGGTGATTACAAAAGCTCTGTATGGGAATCGCAAAAAAGTTAAAGAGAGCAGCGAATCAAATGAGTTGAATGATGATGTGGCTTCGCAAGTATTAGACGTGACCATCCCACTGAACTTCCTCGTCTCTGAGGCAGGCCAGCTAAAGCTTCATGAGGGGATCAAGAAGTCTGGAATAATGGGCTTCTACGATCCTTGCCCTGGTGATCCAAAGCTGTTACTTGTAGAATACACATTTCATGGTCAGAAATACAAGGTCATGGTAGATGATTACGCTG ] [+] EMBL CB635730 [ GCATCGCCGCGCGGAGCAAAGCAGAGAGGGGGAGGAA GCCGCCGCCGCCGCCGCCGCACGGCGGGA T GGAGTCGACGCCGGAGCCGGAGGACGGGAGGGAGCTCTACGCGCTGCTCCACCTCTCGCCGGACGCCTCCGGGGAGGAAATCCGCCGGGCTTACCGCCAGTACGCGCAAATCTACCACCCCGACAAGTACCAGGACCCCCAGATGAAGGATGTGGCAACTGAAAACTTCCAACGAATACGTGATGCATATGAGATACTATCAGATGAGAACAAGAGGCAGATATATGACATCTATGGTATGGAAGGTTTAAATTCTGGCCTGGAAC TTGGCCCCAAGCTAAACAAACCAGAGGAAATCAAAGAACAA TTGGAACGGC TGAAGCGG CGCAA GGAAGAAGAGAAATTTTTAGCCCATGCTCGACCCACTGGCTCAATAATTGCTAATTTTTCCGTGCCACAGTATTTAGATGGCTATGGAATCATGAGAGGCATGGGAATGTCCAGTGAAGTTCAGTTGCCAGTGTCCAAGAAAAATACTGTTGTTGTTGGTGGAAATTT GGTTGTCAATGGCACAGATGGAACTGGTGCAGCAAGCGCTGTGCTGCGTCACCAGTTGTCTTCTG TGGCATCAGTAGAG TTTATGGCTACAGCTGGACTACGTTCCCTTATTAGCG TACAAACATTTCGTCAAATTTCACCACATTCGACAGCAACATCTGGACTTGCTCTTTCTTTG AGAGATGGATCTATCAATCTATCAAATGCCTGGACTCGC ] [+] EMBL CB633880 [ ATCGCCGCGCGGAGCAAAGCAGAGAGGGGGAGGAA GCCGCCGCCGCCGCCGCCGCACGGCGGGA T GGAGTCGACGCCGGAGCCGGAGGACGGGAGGGAGCTCTACGCGCTGCTCCACCTCTCGCCGGACGCCTCCGGGGAGGAAATCCGCCGGGCTTACCGCCAGTACGCGCAAATCTACCACCCCGACAAGTACCAGGACCCCCAGATGAAGGATGTGGCAACTGAAAACTTCCAACGAATACGTGATGCATATGAGATACTATCAGATGAGAACAAGAGGCAGATATATGACATCTATGGTATGGAAGGTTTAAATTCTGGCCTGGAAC TTGGCCCCAAGCTAAACAAACCAGAGGAAATCAAAGAACAA TTGGAACGGC TGAAGCGG CGCAA GGAAGAAGAGAAATTTTTAGCCCATGCTCGACCCACTGGCTCAATAATTGCTAATTTTTCCGTGCCACAGTATTTAGATGGCTATGGAATCATGAGAGGCATGGGAATGTCCAGTGAAGTTCAGTTGCCAGTGTCCAAGAAAAATACTGTTGTTGTTGGTGGAAATTT GGTTGTCAATGGCACAGATGGAACTGGTGCAGCAAGCGCTGTGCTGCGTCACCAGTTGTCTTCTG TGGCATCAGTAGAG TTTATGGCTACAGCTGGACTACGTTCCCTTATTAGCG TACAAACATTTCGTCAAATTTCACCACATTCGACAGCAACATCTGGACTTGCTCTTTCTTTG AGAGATGGATCTATNCATCTATCAAATGCCTGGACTCGCC ] [+] EMBL AU068168 [ CCGCGCGGA NAAAGCAGAGANGGGGAGGAAGCCGCCGCCGCCGCCGCCGCCGCCGCCGCACGG GGTATT GGAGTCGACGCCGGAGCCGGAGGACGGGAGGGAGCTCTACGCGCTGCTCCACCTCTCGCCGGACGCCTCCGGGGAGGAAATCCGCCGGGCTTACCGCCAGTACGCGCAAATCTACCACCCCGACAAGTACCAGGACCCCCAGATGAAGGATGTGGCAACTGAAAACTTCCAACGAATACGTGATGCATATGAGATACTATCAGATGAGAACAAGAGGCAGATATATGACATCTATGGTATGGAAGGTTTAAATTCTGGCCTGGAAC TTGGCCCCAAGCTAAACAAACCAGAGGAAATCAAAGAACAG TTGGAAC ] [+] EMBL CB640338 [ AGAGGGGGAGGAAGCCGCCGCCGCCGCCGCCGCCGCCGCCGCACGGCGGGA T GGAGTCGACGCCGGAGCCGGAGGACGGGAGGGAGCTCTACGCGCTGCTCCACCTCTCGCCGGACGCCTCCGGGGAGGAAATCCGCCGGGCTTACCGCCAGTACGCGCAAATCTACCACCCCGACAAGTACCAGGACCCCCAGATGAAGGATGTGGCAACTGAAAACTTCCAACGAATACGTGATGCATATGAGATACTATCACATGAGAACAAGAGGCAGATATATGACATCTATGGTATGGAAGGTTTAAATTCTGGCCTGGAAC TTGGCCCCAAGCTAAACAAACCAGAGGAAATCAAAGAACAG TTGGAACGGC TGAAGCGG CGCAA GGAAGAAGAGAAATTTTTAGCCCATGCTCGACCCACTGGCTCAATAATTGCTAATTTTTCCGTGCCACAGTATTTAGATGGCTATGGAATCATGAGAGGCATGGGAATGTCCAGTGAAGTTCAGTTGCCAGTGTCCAAGAAAAATACTGTTGTTG ] [+] EMBL CB656342 [ GCCGCCGCCGCCGCCGCCGCCGCCGCCGCACGGCGGGA T GGAGTCGACGCCGGACCCGGAGGACGGGAGGGAGCTCTACGCGCTGCTCCACCTCTCGCCGGACGCCTCCGGGGAGGAAATCCGCCGGGCTTACCGCCAGTACGCGCAAATCTACCACCCCGACAAGTACCAGGACCCCCAGATGAAGGATGTGGCAACTGAAAACTTCCAACGAATACGTGATGCATATGAGATACTATCAGATGAGAACAAGAGGCAGATATATGACATCTATTGTATGGAAGGTTTAAATTCTGGCCTGGAAC TTGGCCCCAAGCTAAACAAACCAGAGGAAATCAAAGAACAG TTGGAACGGC TGAAGCGG CGCAA GGAAGAAGAGAAATTTTTAGCCCATGCTCGACCCACTGGCTCAATAATTGCTAATTTTTCCGTGCCACAGTATTTACATGGCTATGGAATCATGAGAGGCATGGGAATGTCCAGTGAAGTTCAGTTGCCAGTGTCCAAGAAAAATACTGTTGTTGTTGGTGGAAATTT GGTTGTCAATGGCACAGATGGAACTGGTGCAGCAAGCGCTGTGCTGCGTCACCAGTTGTCTTCTG TGGCATCAGTAGAGTTTTATGGCTACAGCT ] [+] EMBL AU068172 [ CGCCGCCGCCGCCGCCGCCGCCGCACGGNGTAN TNGGAGTCGACGCCGGAGCCGGAGGACGGGAGGGAGCTCTACGCGCTGCTCCACCTCTCGCCGGACGCCTCCGGGGAGGAAATCCGCCGGGCTTACCGCCAGTACGCGCAAATCTACCACCCCGACAAGTACCAGGACCCCCAGATGAAGGATGTGGCAACTGAAAACTTCCAACGAATACGTGATGCATATGAGATACTATCAGATGAGAACAAGAGGCAGATATATGACATCTATGGTATGGAAGGTTTAAATTCTGGCCTGGAACTTTGGCCCCAAGCTAAACAAACCAGAGGAAATCAAAGNACAGTTTGGGACGGCTTGAAGCGGNCGAAAGGGAAGGAGAGAATTTTTTAGNCCATGgtttgna ] [+] EMBL AF074763 [ GCCGCCGCCGCCGCCGCCGCACGGCGGGA T GGAGTCGACGCCGGAGCCGGAGGACGGGAGGGAGCTCTACGCGCTGCTCCACCTCTCGCCGGACGCCTCCGGGGAGGAAATCCGCCGGGCTTACCGCCAGTACGCGCAAATCTACCACCCCGACAAGTACCAGGACCCCCAGATGAAGGATGTGGCAACTGAAAACTTCCAACGAATACGTGATGCATATGAGATACTATCAGATGAGAACAAGAGGCAGATATATGACATCTATGGTATGGAAGGTTTAAATTCTGGCCTGGAAC TTGGCCCCAAGCTAAACAAACCAGAGGAAATCAAAGAACAA TTGGAACGGC TGAAGCGG CGCAAGGGAANAANAGAAATTTTTAGCCCATGCTCGACCCACTGGCTCAATAATTGCTAATTTTTCCGTGCCACAGTATTTAGATGGCTATGGAATCATGAGAGGCATGGGAATGTCCAGTGAAGTTCAGTTGCCAGTGTCCAAGAAAAATACTGTTGTTGTTGGTGGAAATTT GGTTGTCAATGGCACAGATGGAACTGGTGCAGCAAGCGCTGTGCTGCGTCACCANTTGTCTTCTGTTGGCATCAGTAAAN TTTATGGCTACAGCTGGACTAC TT CCTTATTAACGTTACAAACATTTCGTCAAATTTCACCACATTCNAAAGCAACATCTGGAATTGCTCTTTCTTTGAAAANATGGNTCTATCAATCTATCCAATGCCTGGACTCNCC ACTATCTGANAATATTGTTGGGAATNTACA CTTG CCTTNGTTCA AATCAA TTTTTCTGTTGGATGGCAAAAAAAGGATNAAAAAAA TCT CNCCNGGGGATGT AAACCTGGTTCTAATT ] [+] EMBL CF322540 [ CCGGGCTTACCGCCAGTACGCGCAAATCTACCACCCCGACAAGTACCAGGACCCCCAGATGAAGGATGTGGCAACTGAAAACTTCCAACGAATACGTGATGCATATGAGATACTATCAGATGAGAACAAGAGGCAGATATATGACATCTATGGTATGGAAGGTTTAAATTCTGGCCTGGAAC TTGGCCCCAAGCTAAACAAACCAGAGGAAATCAAAGAACAG TTGGAACGGC TGAAGCGG CGCAA GGAAGAAGAGAAATTTTTAGCCCATGCTCGACCCACTGGCTCAATAATTGCTAATTTTTCCGTGCCACAGTATTTAGATGGCTATGGAATCATGAGAGGCATGGGAATGTCCAGTGAAGTTCAGTTGCCAGTGTCCAAGAAAAATACTGTTGTTGTTGGTGGAAATTTGGGTTGTCAATGGCACAGATGGAACTGGTGCAGCAAGCGCTGTGCTGCGTCACCAGTTGTCTTCTG TGGCATCAGTAGAG TTTATGGCTACAGCTGGACTACGTTCCCTTATTAGCG TACAAACATTTCGTCAAATTTCACCACATTCGACAGCAACATCTGGACTTGC ] [+] EMBL CA766296 [ GAGGCAGATATATGACATCTATGGTATGGAAGGTTTAAATTCTGGCCTGGAAC TTGGCCCCAAGCTAAACAAACCAGAGGAAAT AAAGAACAA TTGGAACGGC TGAAGCGG CGCAA GGAAGAAGAGAAATTTTTAGCCCATGCTCGACCCACTGGCTCAATAATTGCTAATTTTTCCGTGCCACAGTATTTAGATGGCTATGGAATCATGAGAGGCATGGGAATGTCCAGTGAAGTTCAGTTGCCAGTGTCCAAGAAAAATACTGTTGTTGTTGGTGGAAATTT GGTTGTCAATGGCACAGATGGAACTGGTGCAGCAAGCGCTGTGCTGCGTCACCAGTTGTCTTCTG TGGCATCAGTAGAG TTTATGGCTACAGCTGGACTACGTTCCCTTATTAGCG TACAAACATTTCGTCAAATTTCACCACATTCGACAGCAACATCTGGACTTGCTCTTTCTTTG AGAGATGGATCTATCAATCTATCAAATGCCTGGACTCGCCAACTATCTGACAATATTGTTGGGAATATACAGCTTGCCCTTGGTACAGACTCAAGTATTTCTGTTGGATGGCAAAAGAAGGATGAAAAAAATTCTGCAGCAGGGGATGTGAAGCTTGGTACTAATTATTTTGGTGCATCTGCTCATTACACCTGTTATTTCTCCACCAAGTCTCATGGTCGCGTTGCTGGTCGAGTTGGAAGCACGGCCCTTGATTTTGAAATTGGAGGAGGAAGGCGGATATCTGAGTTCAGTACTGTAAGGATGA ] [+] EMBL CB683497 [ AGGCATGGGAATGTCCAGTGAAGTTCAGTTGCCAGTGTCCAAGAAAAATACTGTTGTTGTTGGTGGAAATTT GGTTGTCAATGGCACAGATGGAACTGGTGCAGCAAGCGCTGTGCTGCGTCACCAGTTGTCTTCTG TGGCATCAGTAGAG TTTATGGCTACAGCTGGACTACGTTCCCTTATTAGCG TACAAACATTTCGTCAAATTTCACCACATTCGACAGCAACATCTGGACTTGCTCTTTCTTTG AGAGATGGATCTATCAATCTATCAAATGCCTGGACTCGCCAACTATCTGACAATATTGTTGGGAATATACAGCTTGCCCTTGGTACAGACTCAAGTATTTCTGTTGGATGGCAAAAGAAGGATG AAAAAATTCTGCAGCAGGGGATGTGAAGCTTGGTACTAATTATTTTGGTGCATCTGCTCATTACACCCGTTATTTCTCCACCAAGTCTCATGGTCGCGTTGCTGGTCGAGTTGGAAGCACGGCCCTTGATTTTGAAATTGGAGGAGGAAGGCGGATATCTGAGTTCAGTACTGTAAGGATGATCTATAATATAGGAATCCAGGGGGTCTCTTGGAGATTCGAGTTGCATCGTGCTGGTCAAAAATTAGTTATCCCAGTTTTGCTTTCAACTGATTTCAATGCATTACTTGCTACCAGCGTTTTTGCTATTCCTTCAACACTATATTTTCTACTTCAGACGTATTTTGTAAAGCCATACTGTCTTAAGCGGGAAAAGCAGAAGGAACTTGAATAAATGG ] [-] EMBL CB633881 [ TCCAGGGGGTCTCTTGGAGATTCGAGTTGCATCGTGCTGGTCAAAAATTAGTTATCCCAGTTTTGCTTTCAACTGATTTCAATGCATTACTTGCTACCAGCGTTTTTGCTATTCCTTCAACACTATATTTTCTACTTCAGACGTATTTTGTAAAGCCATACTGTCTTAAGCGGGAAAAGCAGAAGGAACTTGAAAAAATGGAAAGTTTGTCTTCACAGCTAACTGAAGCCAGACGCGCAGCGAAAAAAGCA CAAAAGTTACTAGAACCTGTCTCAAATCGTAAGAAGAATAGACAGCTGGAGGATGATGGCTTGGTGATTACAAAAGCTCTGTATGGGAATCGCAAAAAAGTTAAAGAGAGCAGCGAATCAAATGAGTTGAATGATGATGTGGCTTCACAAGTATTAGACGTGACCATCCCACTGAACTTCCTCGTCTCTGAGGCAGGCCAGCTAAAGCTTCATGAGGGGATCAAGAAGTCTGGAATAATGGGCTTCTACGATCCTTGCCCTGGTGATCCAAAGCTGTTACTTGTAGAATACACATTTCATGGTCAGAAATACAAGGTCATGGTAGATGATTACGCTGC] [-] EMBL CB629936 [ GCTGGTCAAAAATTAGTTATCCCAGTTTTGCTTTCAACTGATTTCAATGCATTACTTGCTACCAGCGTTTTTGCTATTCCTTCAACACTATATTTTCTACTTCAGACGTATTTTGTAAAGCCATACTGTCTTAAGCGGGAAAAGCAGAAGGAACTTGAAAAAATGGAAAGTTTGTCTTCACAGCTAACTGAAGCCAGACGCGCAGCGAAAAAAGCA CAAAAGTTACTAGAACCTGTCTCAAATCGTAAGAAGAATAGACAGCTGGAGGATGATGGCTTGGTGATTACAAAAGCTCTGTATGGGAATCGCAAAAAAGTTAAAGAGAGCAGCGAATCAAATGAGTTGAATGATGATGTGGCTTCACAAGTATTAGACGTGACCATCCCACTGAACTTCCTCGTCTCTGAGGCAGGCCAGCTAAAGCTTCATGAGGGGATCAAGAAGTCTGGAATAATGGGCTTCTACGATCCTTGCCCTGGTGATCCAAAGCTGTTACTTGTAGAATACACATTTCATGGTCAGAAATACAAGGTCATGGTAGATGATTACGCTGC] [-] EMBL CB635258 [ TTCAACTGATTTCAATGCATTACTTGTTACCAGCG TTTTGCTATTCCTTCAACACTATATTTTCTACTTCAGACGTATTTTGTAAAGCCATACTGTCTTAAGCGGGAAAAGCAGAAGGAACTTGAAAAAATGGAAAGTTTGTCTTCACAGCTAACTGAAGCCAGACGCGCAGCGAAAAAAGCA CAAAAGTTACTAGAACCTGTCTCAAATCGTAAGAAGAATAGACAGCTGGAGGATGATGGCTTGGTGATTACAAAAGCTCTGTATGGGAATCGCAAAAAAGTTAAAGAGAGCAGCGAATCAAATGAGTTGAATGATGATGTGGCTTCACAAGTATTAGACGTGACCATCCCACTGAACTTCCTCGTCTCTGAGGCAGGCCAGCTAAAGCTTCATGAGGGGATCAAGAAGTCTGGAATAATGGGCTTCTACGATCCTTGCCCTGGTGATCCAAAGCTGTTACTTGTAGAATACACATTTCATGGTCAGAAATACAAGGTCATGGTAGATGATTACGCTGC] [-] EMBL CB635731 [ AAGCAGAAGGAACTTGAAAAAATGGAAAGTTTGTCTTCACAGCTAACTGAAGCCAGACGCGCAGCGAAAAAAGCA CAAAAGTTATTAGAACCTGTCTCAAATCGTAAGAAGAATAGCCAGCTGGAGGATGATGGTTTGGTGATTACAAAAGCTCTGTATGGGAATCGCAAAAAAGTTAAAGAGAGCAGCGAATCAAATGAGTTGAATGATGATGTGGCTTCACAAGTATTAGAAGTGACCATCCCGATGAACTTCTTAGTATCTGAGGCAGGCCAGCTAAAGCTTCATGAGGGGATCAAGAAGTCTGGAATAATGGGCTTCTACGATCCTTGCCCTGGTGATCCAAAGCTGTTACTTGTAGAATACACATTTCATGGTCAGAAATACAAGGTCATGGTAGATGATTACGTTGC] [-] EMBL CB683889 [ GGAACTTGAAAAAATGGAAAGTTTGTCTTCACAGCTAACTGAAGCCAGACGCGCAGCGAAAAAAGCA CAAAAGTTACTAGAACCTGTCTCAAATCGTAAGAAGAATAGACAGCTGGAGGATGATGGCTTGGTGATTACAAAAGCTCTGTATGGGAATCGCAAAAAAGTTAAAGAGAGCAGCGAATCAAATGAGTTGAATGATGATGTGGCTTCGCAAGTATTAGACGTGACCATCCCACTGAACTTCCTCGTCTCTGAGGCAGGCCAGCTAAAGCTTCATGAGGGGATCAAGAAGTCTGGAATAATGGGCTTCTACGATCCTTGCCCTGGTGATCCAAAGCTGTTACTTGTAGAATACACATTTCATGGTCAGAAATACAAGGTCATGGTAGATGATTACGCTGC] [+] EMBL AU068169 [ GACGCGCAGCGAAAAAAGCACCAAAAGTTACTAGAACCTGTCTCAAATCGTAAGAAGAATAGACAGCTGGAGGATGATGGCTTGGTGATTACAAAAGCTCTGTATGGGAATCGCAAAAAAGTTAAAGAGAGCAGCGAATCAAATGAGTTGAATGATGATGT GNTTCGCAAGTATTAGACGTGACCATCCCACTGAACTTCCTCGTCTCTGAGGCAGGCCAGCTAAAGCTTCATGAGGGGATCAAGAAGTCTGGAATAATGGGCTTCTACGATCCTTGCCCTGGTGATCCAAAGCTGTTACTTGTAGAATACACATTTCATGGTCAGAAATACAAGGTCATGGTAGATGATTACGCTG ] [+] EMBL AU067954 [ GGAGGATGATGGCTTGGTGATTACAAAAGCTCTGTATGGGAATCGCAAAAAAGTTAAAGAGAGCAGCGAATCAAATGAGTTGAATGATGATGT GNTTCGCAAGTATTAGACGTGACCATCCCACTGAACTTCCTCGTCTCTGAGGCAGGCCAGCTAAAGCTTCATGAGGGGATCAAGAAGTCTGGAATAATGGGCTTCTACGATCCTTGCCCTGGTGATCCAAAGCTGTTACTTGTAGAATACACATTTCATGGTCAGAAATACAAGGTCATGGTAGATGATTACGCTG ] [+] EMBL OSC0051 [ AGGATGATGGCTTGGTGATTACAAAAGCTCTGTATGGGAATCGCAAAAANGTTAAAGAGAGCAGCGAATCAAATGAGTTGAATGATGATGTGGCTTCGCAAGTATTAGACGTGACCATCCCACTGAACTTCCTCGTCTCTGAGGCAGGCCAGCTAAAGCTTCATGAGGGGATCAAGAAGTCTGGAATAATGGGCTTCTACGATCCTTGCCCTGGTGATCCAAAGCTGTTACTTGTAGAATACACATTTCATGGTCAGAAATACAAGGTCATGGTAGATGATTACGCTG ] consensusID : consensus_15608#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 738 fasta sequence [AGAGCGCGGTAGGAAGCCGCCGCCGCCGCCGCCGCACGGCGGGATGGAGTCGACGCCGGAGCCGGAGGACGGGAGGGAGCTCTACGCGCTGCTCCACCTCTCGCCGGACGCCTCCGGGGAGGAAATCCGCCGGGCTTACCGCCAGTACGCGCAAATCTACCACCCCGACAAGTACCAGGACCCCCAGATGAAGGATGTGGCAACTGAAAACTTCCAACGAATACGTGATGCATATGAGATACTATCAGATGAGAACAAGAGGCAGATATATGACATCTATGGTATGGAAGGTTTAAATTCTGGCCTGGAACTTGGCCCCAAGCTAAACAAACCAGAGGAAATCAAAGAACAATTGGAACGGCTGAAGCGGCGCAAGGAAGAAGAGAAATTTTTAGCCCATGCTCGACCCACTGGCTCAATAATTGCTAATTTTTCCGTGCCACAGTATTTAGATGGCTATGGAATCATGAGAGGCATGGGAATGTCCAGTGAAGTTCAGTTGCCAGTGTCCAAGAAAAATACTGTTGTTGTTGGTGGAAATTTGGTTGTCAATGGCACAGATGGAACTGGTGCAGCAAGCGCTGTGCTGCGTCACCAGTTGTCTTCTGTGGCATCAGTAGAGTTTATGGCTACAGCTGGACTACGTTCCCTTATTAGCGTACAAACATTTCGTCAAATTTCACCACATTCGACAGCAACATCTGGACTTGCTCTTTCTTTGAGAGATGGATCTATCAA] [+] EMBL CB629935 [AGAGCGCGGTAGGAAGCCGCCGCCGCCGCCGCCGCACGGCGGGATGGAGTCGACGCCGGAGCCGGAGGACGGGAGGGAGCTCTACGCGCTGCTCCACCTCTCGCCGGACGCCTCCGGGGAGGAAATCCGCCGGGCTTACCGCCAGTACGCGCAAATCTACCACCCCGACAAGTACCAGGACCCCCAGATGAAGGATGTGGCAACTGAAAACTTCCAACGAATACGTGATGCATATGAGATACTATCAGATGAGAACAAGAGGCAGATATATGACATCTATGGTATGGAAGGTTTAAATTCTGGCCTGGAACTTGGCCCCAAGCTAAACAAACCAGAGGAAATCAAAGAACAATTGGAACGGCTGAAGCGGCGCAAGGAAGAAGAGAAATTTTTAGCCCATGCTCGACCCACTGGCTCAATAATTGCTAATTTTTCCGTGCCACAGTATTTAGATGGCTATGGAATCATGAGAGGCATGGGAATGTCCAGTGAAGTTCAGTTGCCAGTGTCCAAGAAAAATACTGTTGTTGTTGGTGGAAATTTGGTTGTCAATGGCACAGATGGAACTGGTGCAGCAAGCGCTGTGCTGCGTCACCAGTTGTCTTCTGTGGCATCAGTAGAGTTTATGGCTACAGCTGGACTACGTTCCCTTATTAGCGTACAAACATTTCGTCAAATTTCACCACATTCGACAGCAACATCTGGACTTGCTCTTTCTTTGAGAGATGGATCTATCAA] [+] EMBL CB635257 [ AGAGGGGGAGGAAGCCGCCGCCGCCGCCGCCGCACGGCGGGATGGAGTCGACGCCGGAGCCGGAGGACGGGAGGGAGCTCTACGCGCTGCTCCACCTCTCGCCGGACGCCTCCGGGGAGGAAATCCGCCGGGCTTACCGCCAGTACGCGCAAATCTACCACCCCGACAAGTACCAGGACCCCCAGATGAAGGATGTGGCAACTGAAAACTTCCAACGAATACGTGATGCATATGAGATACTATCAGATGAGAACAAGAGGCAGATATATGACATCTATGGTATGGAAGGTTTAAATTCTGGCCTGGAACTTGGCCCCAAGCTAAACAAACCAGAGGAAATCAAAGAACAATTGGAACGGCTGAAGCGGCGCAAGGAAGAAGAGAAATTTTTAGCCCATGCTCGACCCACTGGCTCAATAATTGCTAATTTTTCCGTGCCACAGTATTTAGATGGCTATGGAATCATGAGAGGCATGGGAATGTCCAGTGAAGTTCAGTTGCCAGTGTCCAAGAAAAATACTGTTGTTGTTGGTGGAAATTTGGTTGTCAATGGCACAGATGGAACTGGTGCAGCAAGCGCTGTGCTGCGTCACCAGTTGTCTTCTGTGGCATCAGTAGAGTTTATGGCTACAGCTGGACTACGTTCCCTTATTAGCGTAC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15608#0 TATTAAAAAAAAATCCACATAAACCCTCGCTTCCGAAAAAACCCGCATCGCCGCGCGGAG 60 consensus_15608#1 ------------------------------------------------------------ consensus_15608#0 CAAAGCAGAGAGGGGGAGGAAGCCGCCGCCGCCGCCGCCGCCGCCGCCGCACGGCGGGAT 120 consensus_15608#1 ------AGAGCGCGGTAGGAAGCCGCCGCCGCCGCCG---------CCGCACGGCGGGAT 45 **** * ** ********************* ************** consensus_15608#0 GGAGTCGACGCCGGAGCCGGAGGACGGGAGGGAGCTCTACGCGCTGCTCCACCTCTCGCC 180 consensus_15608#1 GGAGTCGACGCCGGAGCCGGAGGACGGGAGGGAGCTCTACGCGCTGCTCCACCTCTCGCC 105 ************************************************************ consensus_15608#0 GGACGCCTCCGGGGAGGAAATCCGCCGGGCTTACCGCCAGTACGCGCAAATCTACCACCC 240 consensus_15608#1 GGACGCCTCCGGGGAGGAAATCCGCCGGGCTTACCGCCAGTACGCGCAAATCTACCACCC 165 ************************************************************ consensus_15608#0 CGACAAGTACCAGGACCCCCAGATGAAGGATGTGGCAACTGAAAACTTCCAACGAATACG 300 consensus_15608#1 CGACAAGTACCAGGACCCCCAGATGAAGGATGTGGCAACTGAAAACTTCCAACGAATACG 225 ************************************************************ consensus_15608#0 TGATGCATATGAGATACTATCAGATGAGAACAAGAGGCAGATATATGACATCTATGGTAT 360 consensus_15608#1 TGATGCATATGAGATACTATCAGATGAGAACAAGAGGCAGATATATGACATCTATGGTAT 285 ************************************************************ consensus_15608#0 GGAAGGTTTAAATTCTGGCCTGGAACTTGGCCCCAAGCTAAACAAACCAGAGGAAATCAA 420 consensus_15608#1 GGAAGGTTTAAATTCTGGCCTGGAACTTGGCCCCAAGCTAAACAAACCAGAGGAAATCAA 345 ************************************************************ consensus_15608#0 AGAACAGTTGGAACGGCTGAAGCGGCGCAAGGAAGAAGAGAAATTTTTAGCCCATGCTCG 480 consensus_15608#1 AGAACAATTGGAACGGCTGAAGCGGCGCAAGGAAGAAGAGAAATTTTTAGCCCATGCTCG 405 ****** ***************************************************** consensus_15608#0 ACCCACTGGCTCAATAATTGCTAATTTTTCCGTGCCACAGTATTTAGATGGCTATGGAAT 540 consensus_15608#1 ACCCACTGGCTCAATAATTGCTAATTTTTCCGTGCCACAGTATTTAGATGGCTATGGAAT 465 ************************************************************ consensus_15608#0 CATGAGAGGCATGGGAATGTCCAGTGAAGTTCAGTTGCCAGTGTCCAAGAAAAATACTGT 600 consensus_15608#1 CATGAGAGGCATGGGAATGTCCAGTGAAGTTCAGTTGCCAGTGTCCAAGAAAAATACTGT 525 ************************************************************ consensus_15608#0 TGTTGTTGGTGGAAATTTGGTTGTCAATGGCACAGATGGAACTGGTGCAGCAAGCGCTGT 660 consensus_15608#1 TGTTGTTGGTGGAAATTTGGTTGTCAATGGCACAGATGGAACTGGTGCAGCAAGCGCTGT 585 ************************************************************ consensus_15608#0 GCTGCGTCACCAGTTGTCTTCTGTGGCATCAGTAGAGTTTATGGCTACAGCTGGACTACG 720 consensus_15608#1 GCTGCGTCACCAGTTGTCTTCTGTGGCATCAGTAGAGTTTATGGCTACAGCTGGACTACG 645 ************************************************************ consensus_15608#0 TTCCCTTATTAGCGTACAAACATTTCGTCAAATTTCACCACATTCGACAGCAACATCTGG 780 consensus_15608#1 TTCCCTTATTAGCGTACAAACATTTCGTCAAATTTCACCACATTCGACAGCAACATCTGG 705 ************************************************************ consensus_15608#0 ACTTGCTCTTTCTTTGAGAGATGGATCTATCAATCTATCAAATGCCTGGACTCGCCAACT 840 consensus_15608#1 ACTTGCTCTTTCTTTGAGAGATGGATCTATCAA--------------------------- 738 ********************************* consensus_15608#0 ATCTGACAATATTGTTGGGAATATACAGCTTGCCCTTGGTACAGACTCAAGTATTTCTGT 900 consensus_15608#1 ------------------------------------------------------------ consensus_15608#0 TGGATGGCAAAAGAAGGATGAAAAAAATTCTGCAGCAGGGGATGTGAAGCTTGGTACTAA 960 consensus_15608#1 ------------------------------------------------------------ consensus_15608#0 TTATTTTGGTGCATCTGCTCATTACACCCGTTATTTCTCCACCAAGTCTCATGGTCGCGT 1020 consensus_15608#1 ------------------------------------------------------------ consensus_15608#0 TGCTGGTCGAGTTGGAAGCACGGCCCTTGATTTTGAAATTGGAGGAGGAAGGCGGATATC 1080 consensus_15608#1 ------------------------------------------------------------ consensus_15608#0 TGAGTTCAGTACTGTAAGGATGATCTATAATATAGGAATCCAGGGGGTCTCTTGGAGATT 1140 consensus_15608#1 ------------------------------------------------------------ consensus_15608#0 CGAGTTGCATCGTGCTGGTCAAAAATTAGTTATCCCAGTTTTGCTTTCAACTGATTTCAA 1200 consensus_15608#1 ------------------------------------------------------------ consensus_15608#0 TGCATTACTTGCTACCAGCGTTTTTGCTATTCCTTCAACACTATATTTTCTACTTCAGAC 1260 consensus_15608#1 ------------------------------------------------------------ consensus_15608#0 GTATTTTGTAAAGCCATACTGTCTTAAGCGGGAAAAGCAGAAGGAACTTGAAAAAATGGA 1320 consensus_15608#1 ------------------------------------------------------------ consensus_15608#0 AAGTTTGTCTTCACAGCTAACTGAAGCCAGACGCGCAGCGAAAAAAGCACAAAAGTTACT 1380 consensus_15608#1 ------------------------------------------------------------ consensus_15608#0 AGAACCTGTCTCAAATCGTAAGAAGAATAGACAGCTGGAGGATGATGGCTTGGTGATTAC 1440 consensus_15608#1 ------------------------------------------------------------ consensus_15608#0 AAAAGCTCTGTATGGGAATCGCAAAAAAGTTAAAGAGAGCAGCGAATCAAATGAGTTGAA 1500 consensus_15608#1 ------------------------------------------------------------ consensus_15608#0 TGATGATGTGGCTTCGCAAGTATTAGACGTGACCATCCCACTGAACTTCCTCGTCTCTGA 1560 consensus_15608#1 ------------------------------------------------------------ consensus_15608#0 GGCAGGCCAGCTAAAGCTTCATGAGGGGATCAAGAAGTCTGGAATAATGGGCTTCTACGA 1620 consensus_15608#1 ------------------------------------------------------------ consensus_15608#0 TCCTTGCCCTGGTGATCCAAAGCTGTTACTTGTAGAATACACATTTCATGGTCAGAAATA 1680 consensus_15608#1 ------------------------------------------------------------ consensus_15608#0 CAAGGTCATGGTAGATGATTACGCTGC 1707 consensus_15608#1 --------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||