These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1561#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1064 fasta sequence [TTCCGCTCCAGAGGCTTCACAGCTTTCTCCTCCCGTAGAGCCAAGCCAACCAAGCGGGAGCAGCATGGCTACGGCCACGTCGACGGCGACGAGCGTGGCGGCGGCGCTCCTCCTCTCGCTCCTCCTGGCGCGCGCGCGGGGCGACGACGACTACTCGGGGTTCGTGTACGCCGGGTGCTCGCAGGGGCGCTACGCCTCCGGCACGCAGTACGCGTCGGACGTCGACTCCGTGCTCACCTCCGTCGCCAACAGCGCGCCCTACTCCCCCTACGCCAACTTCACCTCGCCGACGTCGAACTCGGTGGTCGGCGTCTACCAGTGCCGCTCCGACCTCCCGGCCTCCGTTTGCACCGGCTGCGTCCGCTCCGCCATCTCCAGGCTCTCCTCGCTCTGCGCCTGGGCCACCGGCGGCGCCGTGCAGCTGCGGGCCTGCTTCGTGCGCTACGGCAACGACACGTTCCTCGGGAAGCAGGACACGGCCGTGCTGTTCAAGAAGTGCGGCGGCTCGCCGGGGGACGCCGGCGGCGCCGCCATGCGGGACTCGGCGCTCGGCGCGCTCGTGGCCGCCGCGGCGCCCGCCGGGGGAGGCTACCGCGCCGGCGGGTCCGGGGGCGTGCAGGCCATGTCGCAGTGCGTGGGGGACCTCGGCGCCAAGGCCTGCTCCGACTGCGTCTCGGCCGCCGCCGGCCAGCTCAAGGCCGGCTGCGGCTACGCCACGGCCGGCGAGGTGTACCTCGGCAAGTGCTACGCGCGCTTCTGGGGGAACGGGGGCGGTGGATTCAGCAGCGGCGCCGCCGGGGACGCGTACGGATCTGGGCATCGCGTGTCCGGCAACCGGTTCGTTCTCTCCGTCGCCGGCGGTTTCTTCACTTCCTTGGCCTATATATTTGTACTCATGTAGTTACTGAATTACAGTTGCAGTATGATCAATGATCGTGAACTAGACTACTAGAGTGCCTGTGTCTGTGTGCTTTATGCGTGGTATGTAACCACTAATCAGCATATCTGCATATGTGATGCGATGCAGGTTTACTCCTTGTGCTTGAACAAATTAAACTTGATGC] [+] EMBL AK109142 [TTCCGCTCCAGAGGCTTCACAGCTTTCTCCTCCCGTAGAGCCAAGCCAACCAAGCGGGAGCAGCATGGCTACGGCCACGTCGACGGCGACGAGCGTGGCGGCGGCGCTCCTCCTCTCGCTCCTCCTGGCGCGCGCGCGGGGCGACGACGACTACTCGGGGTTCGTGTACGCCGGGTGCTCGCAGGGGCGCTACGCCTCCGGCACGCAGTACGCGTCGGACGTCGACTCCGTGCTCACCTCCGTCGCCAACAGCGCGCCCTACTCCCCCTACGCCAACTTCACCTCGCCGACGTCGAACTCGGTGGTCGGCGTCTACCAGTGCCGCTCCGACCTCCCGGCCTCCGTTTGCACCGGCTGCGTCCGCTCCGCCATCTCCAGGCTCTCCTCGCTCTGCGCCTGGGCCACCGGCGGCGCCGTGCAGCTGCGGGCCTGCTTCGTGCGCTACGGCAACGACACGTTCCTCGGGAAGCAGGACACGGCCGTGCTGTTCAAGAAGTGCGGCGGCTCGCCGGGGGACGCCGGCGGCGCCGCCATGCGGGACTCGGCGCTCGGCGCGCTCGTGGCCGCCGCGGCGCCCGCCGGGGGAGGCTACCGCGCCGGCGGGTCCGGGGGCGTGCAGGCCATGTCGCAGTGCGTGGGGGACCTCGGCGCCAAGGCCTGCTCCGACTGCGTCTCGGCCGCCGCCGGCCAGCTCAAGGCCGGCTGCGGCTACGCCACGGCCGGCGAGGTGTACCTCGGCAAGTGCTACGCGCGCTTCTGGGGGAACGGGGGCGGTGGATTCAGCAGCGGCGCCGCCGGGGACGCGTACGGATCTGGGCATCGCGTGTCCGGCAACCGGTTCGTTCTCTCCGTCGCCGGCGGTTTCTTCACTTCCTTGGCCTATATATTTGTACTCATGTAGTTACTGAATTACAGTTGCAGTATGATCAATGATCGTGAACTAGACTACTAGAGTGCCTGTGTCTGTGTGCTTTATGCGTGGTATGTAACCACTAATCAGCATATCTGCATATGTGATGCGATGCAGGTTTACTCCTTGTGCTTGAACAAATTAAACTTGATGC] consensusID : consensus_1561#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 629 fasta sequence [CGGGTACGCCTCTGCCGGCGAGGTGTACCTCGGCAAGTGCTACGCGCGCTTCTGGTCCAATGCCGGCACCGGGGACAACAACGGAGGCGGCGTCAGCGGCGGCGGTGGCGGCATTGGCGGCGGCGGGAATGGCATCAATGGCGGCGGCGGCGCTGTGGGCGGCGGCAATGGATACGCATATGGATTTGTGCCGCACACGTACAGTGACCACGATGAATCTGGGAAAACCCTTGCAATCATCATCGGCCTCGTCGCGGCTGTCGCCCTAGTCATCGTCTTCCTCTCCTTCGTCAGAAGAGCCGGTGGTGTCGGTGGCAAAAGCTAAGGGTGAGCAGGATGGTCACCACTTAGCTCAAATTGGATCGGTCAGTGTGGCTTTTTCTTGGGCATCGCTTTGGTATCTCTCCTACACATCTCTTTTATCTTTTAGGGTCTCTTTTGTCGTCTCATTATGGGCCAAAACAAAGAGGAAGCCATGCCGAAATGACCTAAGCTGAAAGGAACCCACTGTGCTGAAGTGTGCGGTGAAGATTCCAGCTGCTACCTGCAACTACCCACTANGGGAAAATGACTCAAAAAAATAATCAAGGAGTAAATAAAGTGTGGTGTCTACCTGTTAGATAATCTGT] [+] EMBL CA753580 [CGGGTACGCCTCTGCCGGCGAGGTGTACCTCGGCAAGTGCTACGCGCGCTTCTGGTCCAATGCCGGCACCGGGGACAACAACGGAGGCGGCGTCAGCGGCGGCGGTGGCGGCATTGGCGGCGGCGGGAATGGCATCAATGGCGGCGGCGGCGCTGTGGGCGGCGGCAATGGATACGCATATGGATTTGTGCCGCACACGTACAGTGACCACGATGAATCTGGGAAAACCCTTGCAATCATCATCGGCCTCGTCGCGGCTGTCGCCCTAGTCATCGTCTTCCTCTCCTTCGTCAGAAGAGCCGGTGGTGTCGGTGGCAAAAGCTAAGGGTGAGCAGGATGGTCACCACTTAGCTCAAATTGGATCGGTCAGTGTGGCTTTTTCTTGGGCATCGCTTTGGTATCTCTCCTACACATCTCTTTTATCTTTTAGGGTCTCTTTTGTCGTCTCATTATGGGCCAAAACAAAGAGGAAGCCATGCCGAAATGACCTAAGCTGAAAGGAACCCACTGTGCTGAAGTGTGCGGTGAAGATTCCAGCTGCTACCTGCAACTACCCACTANGGGAAAATGACTCAAAAAAATAATCAAGGAGTAAATAAAGTGTGGTGTCTACCTGTTAGATAATCTGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1561#0 TTCCGCTCCAGAGGCTTCACAGCTTTCTCCTCCCGTAGAGCCAAGCCAACCAAGCGGGAG 60 consensus_1561#1 ------------------------------------------------------------ consensus_1561#0 CAGCATGGCTACGGCCACGTCGACGGCGACGAGCGTGGCGGCGGCGCTCCTCCTCTCGCT 120 consensus_1561#1 ------------------------------------------------------------ consensus_1561#0 CCTCCTGGCGCGCGCGCGGGGCGACGACGACTACTCGGGGTTCGTGTACGCCGGGTGCTC 180 consensus_1561#1 ------------------------------------------------------------ consensus_1561#0 GCAGGGGCGCTACGCCTCCGGCACGCAGTACGCGTCGGACGTCGACTCCGTGCTCACCTC 240 consensus_1561#1 ------------------------------------------------------------ consensus_1561#0 CGTCGCCAACAGCGCGCCCTACTCCCCCTACGCCAACTTCACCTCGCCGACGTCGAACTC 300 consensus_1561#1 ------------------------------------------------------------ consensus_1561#0 GGTGGTCGGCGTCTACCAGTGCCGCTCCGACCTCCCGGCCTCCGTTTGCACCGGCTGCGT 360 consensus_1561#1 ------------------------------------------------------------ consensus_1561#0 CCGCTCCGCCATCTCCAGGCTCTCCTCGCTCTGCGCCTGGGCCACCGGCGGCGCCGTGCA 420 consensus_1561#1 ---------------------------------CGGGTACGCCTCTGCCGGCGAGGTGTA 27 ** * *** * * ***** *** * consensus_1561#0 GCTGCGGGCCTGCTTCGTGCGCTACGGCAACGACACGTTCCTCGGGAAGCAGGACACGGC 480 consensus_1561#1 CCTCGGCAAGTGCTACGCGCGCTTCTGGTCCAATGCCGGCACCGGGGA-CAACA-ACGGA 85 ** * **** ** ***** * * * * * * **** * ** * **** consensus_1561#0 CGTGCTGTTCAAGAAGTGCGGCGGCTCGCCGGGGGACGCCGGCGGCGCCGCCATGCGGGA 540 consensus_1561#1 GGCGGCGTCAGCG----GCGGCGGT------GGCGGCATTGGCGGCG-------GCGGGA 128 * * ** * ******* ** * * ******* ****** consensus_1561#0 CTCGGCGCTCGGCGCGCTCGTGGCCGCCGCGGCGCCCGCCGGGGGAGGCTACCGCGCCGG 600 consensus_1561#1 ATGG----------CATCAATGGCGGCGGCGGCG----CTGTGGGCGGCGGCAATGGATA 174 * * * **** ** ****** * * *** *** * * consensus_1561#0 CGGGTCCGGGGGCGTGCAGGCCATGTCGCAGTG--CGTGGGGGACCTCGGCG--CCAAGG 656 consensus_1561#1 CGCATATGGATTTGTGCCGCACACGT-ACAGTGACCACGATGAATCTGGGAAAACCCTTG 233 ** * ** **** * ** ** ***** * * * * ** ** ** * consensus_1561#0 CCTGCTCCGACTGCGTCTCGGCCGCCGCCGGCCAGCTCAAGGCCGGCTGCGGCTACGCCA 716 consensus_1561#1 CAATCATCATCGGCCTCGTCGCGGCTGTCGCCCTAGTCATCGTCTTCCTCTCCTTCGTCA 293 * * * * ** ** ** ** * ** ** *** * * * * ** ** ** consensus_1561#0 CGGCCGGCGA-GGTGTACCTCGGCAAGTGCTACGCGCGCTTCTGGGGGAACGGGGGCGGT 775 consensus_1561#1 GAAGAGCCGGTGGTGT-CGGTGGCAAAAGCTAAGGGTG-----AGCAGGATGGTCACCAC 347 * ** ***** * ***** **** * * * * * * ** * consensus_1561#0 GGATTCAGCAGCGGCGCCGCCGGGGACGCGTACGGATCTGGGCATCGC----GTGTC-CG 830 consensus_1561#1 TTAGCTCAAATTGGATCGGTCAGTGTGGCTTTT--TCTTGGGCATCGCTTTGGTATCTCT 405 * * ** * * * * * ** * ********** ** ** * consensus_1561#0 GCAACCGGTTCGTTCTCTCCGTCGCCGGCGGTTTCTTCACTTCCTT---GGCCTATATAT 887 consensus_1561#1 CCTACACATCTCTTTTATCTTTTAGGGTCTCTTTTGTCGTCTCATTATGGGCCAAAACAA 465 * ** * ** * ** * * * *** ** ** ** **** * * * consensus_1561#0 TT--GTACTCATGTAGTTACTGAATTACAGTTGCAGTATGATCAATGATCGTGAACTAGA 945 consensus_1561#1 AGAGGAAGCCATGCCGA-AATGACCTA-AGCTG-AAAGGAACCCACTGTGCTGAAGTGTG 522 * * **** * * *** ** ** ** * * * * * **** * consensus_1561#0 CTACTAGAGTGCCTGTGTCTGTGTGCTTTATGCGTGGTATGTAACCACTAATCAGCATAT 1005 consensus_1561#1 CGGTGAAGATTCCAGCTGCTACCTGCAAC-TACCCACTANGGGAAAATGACTCAAAAAAA 581 * * * ** * ** *** * * ** * * * * *** * * consensus_1561#0 CTGCATATGTG-ATGCGATGCAGGTTTACTCCTTGTGCTTGAACAAATTAAACTTGATGC 1064 consensus_1561#1 TAATCAAGGAGTAAATAAAGTGTGGTGTCTACCTG---TTAGATAATCTGT--------- 629 * * * * * * * * ** * ** ** * ** * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||