These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15663#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 18 consensus length = 1542 fasta sequence [TTCCTCGAGCACTGTTGGCCTACTGGCCAACTCACATCTCATCTCTTCGCTGCTGCTACTCGAAGCGCACATATTCCCGGAGTTAAATCATCGGTACACCGTCTCAGAGCATTTTTCTCCTCACGGACAAGATGTGCAACTCCAACGTGAAGTCCGCCGGCGTCGCTCAGATCGACGGCCGCCCGGTGCTGCAGCCGGCGGGGAACCGCGT-GGCGGCGCCTGAAGCTGCCCGGCCGCTCAAGAAGTCCCTGCAGAAGTCGCTCTCCATGCCGGCTTCGCTCGACAATGCTGCGGCCGCGACCACCTGCGCGGCGTCCCCCGAGAAGTCCCGCGCCGCCGACTTCGCCCGCGCTGCGGCGGCGTCTCTTCTCCCACCACCTACTCCAGCTTCGGTCAGTGCTAAGGCGACGAGGGTGTCTGGAGCCAAGGTGGCTGCCGCCAGGACTGCGGCGGCGGCTGCGGCCATGGGGGGCTTGGACAGGAGCAGGAAGCCCGCCAAGAAGGGCGGCGCCGCCGTGCTGCCGGTGGTGACGTTCGCGGGGCTCGAGGCGTACGAGCCCGCCGGGAGCATCGCGGCGGCGCAGCGGGAGCACGTCGCGATGGCGCAGGCGCAGCGCAAGATGCGGATCGCGCACTACGGCCGCACCGCGTCCTTCTCCCGAGTCGAAGGGAAAGTCAGCGCTACCGCGACGGGTGCCGCCGAGCTCGTCGCCGGTGCCGTCACCGGGCATGACGAGAAGCGATGCAGCTTCATCACTCCATATTCAGACCCCCTGTACGTCGCCTACCACGACGAGGAGTGGGGTGTGCCCGTGCGCGACGACGAGTTGCTGTTCGAGATGCTCACGTTGTCCGGCGTGCAAGTCGGGGCGGACTGGACCTCGATCCTGAAGAGGAGACACGTCTACAGGGAGGCATTCTCCGGTTTCAACGTGGACGCTGTCGCCAAGTACACGGAGAAGCAGATGGCATCGCTAAG-CGCCGAGTTCGGCCTGGATTTGGGCACCATCAGAGGCGCCGTCAACAACGCCTGCCGGATTTCCGAGGTGAGGAGGGACTTCGGGTCGTTCAGCAAATACGTGTGGGCGTTC-GTAAACAACAAGCCGCTGTCGCCGAGCTACAAATACAGCCGGAAGATCCCGGTGAAGACGTCCAAGTCGGAGTCGATCAGCAAGGACATGGTGCGGCGCGGCTTCCGGTT-CGTCGGCCCCACCGTCAT-CCACTCGTTCATGCAGGCCGTCGGGCTCACCAACGACCACCTCGTGTCATGCCCGCGCCACCGCGTCTGC-TCCTCCT-CCTCCGCTTAACCGATCTGACCATCGCCAAAACAGTTACCGGCCAGCTCCCCGAAGGAAGCAAGGAG-AAAAAACAAGAAGGAAAGAGAAAAAGTGAGAGATGAGATAGCCTCAAGTAGTAGTATACAGAACGGGTATTGATTTGCGAGTGTGTGTATGTGTGTGCTTGTGTAGATTATTGTCCCTAACTAGGCAAGAAGCTTGATTGTCAATTACGTACGAAAAAAAAAAAAAAAAAAGGCCACAT] [+] EMBL AK109346 [TTCCTCGAGCACTGTTGGCCTACTGGCCAACTCACATCTCATCTCTTCGCTGCTGCTACTCGAAGCGCACATATTCCCGGAGTTAAATCATCGGTACACCGTCTCAGAGCATTTTTCTCCTCACGGACAAGATGTGCAACTCCAACGTGAAGTCCGCCGGCGTCGCTCAGATCGACGGCCGCCCGGTGCTGCAGCCGGCGGGGAACCGCGT GGCGGCGCCTGAAGCTGCCCGGCCGCTCAAGAAGTCCCTGCAGAAGTCGCTCTCCATGCCGGCTTCGCTCGACAATGCTGCGGCCGCGACCACCTGCGCGGCGTCCCCCGAGAAGTCCCGCGCCGCCGACTTCGCCCGCGCTGCGGCGGCGTCTCTTCTCCCACCACCTACTCCAGCTTCGGTCAGTGCTAAGGCGACGAGGGTGTCTGGAGCCAAGGTGGCTGCCGCCAGGACTGCGGCGGCGGCTGCGGCCATGGGGGGCTTGGACAGGAGCAGGAAGCCCGCCAAGAAGGGCGGCGCCGCCGTGCTGCCGGTGGTGACGTTCGCGGGGCTCGAGGCGTACGAGCCCGCCGGGAGCATCGCGGCGGCGCAGCGGGAGCACGTCGCGATGGCGCAGGCGCAGCGCAAGATGCGGATCGCGCACTACGGCCGCACCGCGTCCTTCTCCCGAGTCGAAGGGAAAGTCAGCGCTACCGCGACGGGTGCCGCCGAGCTCGTCGCCGGTGCCGTCACCGGGCATGACGAGAAGCGATGCAGCTTCATCACTCCATATTCAGACCCCCTGTACGTCGCCTACCACGACGAGGAGTGGGGTGTGCCCGTGCGCGACGACGAGTTGCTGTTCGAGATGCTCACGTTGTCCGGCGTGCAAGTCGGGGCGGACTGGACCTCGATCCTGAAGAGGAGACACGTCTACAGGGAGGCATTCTCCGGTTTCAACGTGGACGCTGTCGCCAAGTACACGGAGAAGCAGATGGCATCGCTAAG CGCCGAGTTCGGCCTGGATTTGGGCACCATCAGAGGCGCCGTCAACAACGCCTGCCGGATTTCCGAGGTGAGGAGGGACTTCGGGTCGTTCAGCAAATACGTGTGGGCGTTC GTAAACAACAAGCCGCTGTCGCCGAGCTACAAATACAGCCGGAAGATCCCGGTGAAGACGTCCAAGTCGGAGTCGATCAGCAAGGACATGGTGCGGCGCGGCTTCCGGTT CGTCGGCCCCACCGTCAT CCACTCGTTCATGCAGGCCGTCGGGCTCACCAACGACCACCTCGTGTCATGCCCGCGCCACCGCGTCTGC TCCTCCT CCTCCGCTTAACCGATCTGACCATCGCCAAAACAGTTACCGGCCAGCTCCCCGAAGGAAGCAAGGAG AAAAAACAAGAAGGAAAGAGAAAAAGTGAGAGATGAGATAGCCTCA AGTAGTATACAGAACGGGTATTGATTTGCGAGTGTGTGTATGTGTGTGCTTGTGTAGATTATTGTCCCTAACTAGGCAAGAAGCTTGATTGTCAATTACGTACGAAAAAAAAAAAAAAAAAAGGCCACAT] [+] EMBL AU225592 [ gccgCTCTTCGCTGCTGCTACTCGAAGCGCACATATTCCCGGAGTTAAATCATCGGTACACCGTCTCAGAGCATTTTTCTCCTCACGGACAAGATGTGCAACTCCAACGTGAAGTCCGCCGGCGTCGCTCAGATCGACGGCCGCCCGGTGCTGCAGCCGGCGGGGAACCGCGT GGCGGCGCCTGAAGCTGCCCGGCCGCTCAAGAAGTCCCTGCAGAAGTCGCTCTCCATGCCGGCTTCGCTCGACAATGCTGCGGCCGCGACCACCTGCGCGGCGTCCCCCGAGAAGTCCCGCGCCGCCGACTTCGCCCGCGCTGCGGCGGCGTCTCTTCTCCCACCACCTACTCCAGCTTCGGTCAGTGCTAAGGCGACGAGGGTGTCTGGAGCCAAGGTGGCTGCCGCCAGGACTGCGGCGGCGGCTGCGGCCATGGGGGGC TGGACAGGAGCAGGAAG CCGCCCAGA ] [+] EMBL AU066217 [ TCGCTGCTGCTACTCGAAGCGCACATATTCCCGGAGTTAAATCATCGGTACACCGTCTCANAGCATTTTTNTCCTCACGGACAAGATGTGCAACTCCAACGTGAAGTCCGCCGGCGTCGCTCAGATCGACGGCCGCCCGGTGCTGCAGCCGGCGGGGAACCGCGT GGCGGCGCCTGAAGCTGCCCGGCCGCTCAAGAAGTCCCTGCAGAAGTCGCTCTCCATGCCGGCTTCGCT ] [+] EMBL AU197514 [ CGCTGCTGCTACTCGAAGCGCACATATTCCCGGAGTTAAATCATCGGTACACCGTCTCAGAGCATTTTTCTCCTCACGGACAAGATGTGCAACTCCAACGTGAAGTCCGCCGGCGTCGCTCAGATCGACGGCCGCCCGGTGCTGCAGCCGGCGGGGAA CGCGT GGCGGCGCCTGAAGCTGCCCGGCCGCTCAAGAAGTCCCTGCAGAAGTCGCTCTCCATGCCGGCTTCGCT ] [+] EMBL CB645940 [ CTGCTGCTACTCGAAGCGCACATATTCCCGGAGTTAAATCATCGGTACACCGTCTCAGAGCATTTTTCTCCTCACGGACAAGATGTGCAACTCCAACGTGAAGTCCGCCGGCGTCGCTCAGATCGACGGCCGCCCGGTGCTGCAGCCGGCGGGGAACCGCGT GGCGGCGCCTGAAGCTGCCCGGCCGCTCAAGAAGTCCCTGCAGAAGTCGCTCTCCATGCCGGCTTCGCTCGACAATGCTGCGGCCGCGACCACCTGCGCGGCGTCCCCCGAGAAGTCCCGCGCCGCCGACTTCGCCCGCGCTGCGGCGGCGTCTCTTCTCCCACCACCTACTCCAGCTTCGGTCAGTGCTAAGGCGACGAGGGTGTCTGGAGCCAAGGTGGCTGCCGCCAGGACTGCGGCGGCGGCTGCGGCCATGGGGGGCTTGGACAGGAGCAGGAAGCCCGCCAAGAAGGGCGGCGCCGCCGTGCTGCCGGTGGTGACGTTCGCGGGGCTCGAGGCGTACGAGCCCGCCGGGAGCATCGCGGCGGCGCAGCGGGAGCACGTCGCGATGGCGCAGGCGCAGCGCAAGATGCGGATCGCGCACTACGGCCGCACCGCGTCCTTCTCCCGAGTCGAAGGGAAAGTCAGCGCTACCGCGACGGGTGCCGCCGAGCTCGTCGCCGGTGCCGTCACCGGGCATGACGAGAAGCGATGCAGCTTCATCACTCCATATTCAGACCCCCTGTACGTCGCCTACCACGACGAGGAGTGGGGTGTGCCCGTGCGCGACGACGAGTTGCTGTTCGAGATGCTCACGTTGTCCGGCGTGCAAGTCGGGG ] [+] EMBL AU064445 [ CTGCTGCTACTCGAAGCGCACATATTCCCGGAGTTAAATCATCGGTACACCGTCTCAGAGCATTTTTCTCCTCACGGACAAGATGTGCAACTCCAACGTGAAGTCCGCCGGCGTCGCTCAGATCGACGGCCGCCCGGTGCTGCAGCCGGCGGGGAACCGCGT GGCGGCGCCTGAAGCTGCNCGGCCGCTCAAGAAGTCCCTGCAGAAGTCGCTCTCCATGCCGGCTTCGCT ] [+] EMBL AU223396 [ CTGCTGCTACTCGAAGCGCACATATTCCCGGAGTTAAATCATCGGTACACCGTCTCAGAGCATTTTTCTCCTCACGGACAAGATGTGCAACTCCAACGTGAAGTCCGCCGGCGTCGCTCAGATCGACGGCCGCCCGGTGCTGCAGCCGGCGGGGAACCGCGT GGCGGCGCCTGAAGCTGCCCGGCCGCTCAAGAAGTCCCTGCAGAAGTCGCTCTCCATGCCGGCTTCGCT ] [+] EMBL CB649997 [ TGCTGCTACTCGAAGCGCACATATTCCCGGAGTTAAATCATCGGTACACCGTCTCAGAGCATTTTTCTCCTCACGGACACCATGTGCAACTCCAACGTGAAGTCCGCCGGCGTCGCTCAGATCGACGGCCGCCCGGTGCTGCAGCCGGCGGGGAACCGCGT GGCGGCGCCTGAAGCTGCCCGGCCGCTCAAGAAGTCCCTGCAGAAGTCGCTCTCCATGCCGGCTTCGCTCGACAATGCTGCGGCCGCGACCACCTGCGCGGCGTCCCCCGAGAAGTCCCGCGCCGCCGACTTCGCCCGCGCTGCGGCGGCGTCTCTTCTCCCACCACCTACTCCAGCTTCGGTCAGTGCTAAGGCGACGAGGGTGTCTGGAGCCAAGGTGGCTGCCGCCAGGACTGCGGCGGCGGCTGCGGCCATGGGGGGCTTGGACAGGAGCAGGAAGCCCGCCAAGAAGGGCGGCGCCGCCGTGCTGCCGGTGGTGACGTTCGCGGGGCTCGAGGCGTACGAGCCCGCCGGGAGCATCGCGGCGGCGCAGCGGGAGCACGTCGCGATGGCGCAGGCGCAGCGCAAGATGCGGATCGCGCACTACGGCCGCACCGCGTCCTTCTCCCGAGTCGAAGGGAAAGTCAGCGCTACCGCGACGGGTGCCGCCGAGCTCGTCGCCGGTGCCGTCACCGGGCATGACGAGAAGCGATGCAGCTTCATCACTCCATATTCAGACCCCCTGTACGTCGCCTACCACGACGAGGAGTGGGGTGTGCCCGTGCGCGACGACGAGTTGCTGTTCGAGATGCTCACGTTGTCCGGCGTGCAAGTCGGG ] [+] EMBL CB644454 [ TACTCGAAGCGCACATATTCCCGGAGTTAAATCATCGGTACACCGTCTCAGAGCATTTTTCTCCTCACGGACAAGATGTGCAACTCCAACGTGAAGTCCGCCGGCGTCGCTCAGATCGACGGCCGCCCGGTGCTGCAGCCGGCGGGGAACCGCGT GGCGGCGCCTGAAGCTGCCCGGCCGCTCAAGAAGTCCCTGCAGAAGTCGCTCTCCATGCCGGCTTCGCTCGACAATGCTGCGGCCGCGACCACCTGCGCGGCGTCCCCCGAGAAGTCCCGCGCCGCCGACTTCGCCCGCGCTGCGGCGGCGTCTCTTCTCCCACCACCTACTCCAGCTTCGGTCAGTGCTAAGGCGACGAGGGTGTCTGGAGCCAAGGTGGCTGCCGCCAGGACTGCGGCGGCGGCTGCGGCCATGGGGGGCTTGGACAGGAGCAGGAAGCCCGCCAAGAAGGGCGGCGCCGCCGTGCTGCCGGTGGTGACGTTCGCGGGGCTCGAGGCGTACGAGCCCGCCGGGAGCATCGCGGCGGCGCAGCGGGAGCACGTCGCGATGGCGCAGGCGCAGCGCAAGATGCGGATCGCGCACTACGGCCGCACCGCGTCCTTCTCCCGAGTCGAAGGGAAAGTCAGCGCTACCGCGACGGGTGCCGCCGAGCTCGTCGCCGGTGCCGTCACCGGGCATGACGAGAAGCGATGCAGCTTCATCACTCCATATTCAGACCCCCTGTACGTCGCCTACCACGACGAGGAGTGGGGTGTGCCCGTGCGCGACGACGAGTTGCTGTTCGAGATGCTCACGTTGTCCGG ] [+] EMBL OSC1881 [ AGCGCACATATTCCCGGAGTTAAATCATCGGTACACCGTCTCAGAGCATTTTTCTCCTCACGGACAAGATGTGCAACTCCAACGTGAAGTCCGCCGGCGTCGCTCAGATCGACGGCCGCCCGGTGCTGCAGCCNGCGGGGAACCG GTNNGCGCTGCCTGAAGCTGCCCGGCCGCTCAAGAAGTCCCTGCAGAAGTCGCTCTCCATGCCGGCTTCG ] [-] EMBL CB644455 [ GAAGCGATGCAGCTTCATCACTCCATATTCAGACCCCCTGTACGTCGCCTACCACGACGAGGAGTGGGGTGTGCCCGTGCGCGACGACGAGTTGCTGTTCGAGATGCTCACGTTGTCCGGCGTGCAAGTCGGGGCGGACTGGACCTCGATCCTGAAGAGGAGACACGTCTACAGGGAGGCATTCTCCGGTTTCAACGTGGACGCTGTCGCCAAGTACACGGAGAAGCAGATGGCATCGCTAAG CGCCGAGTTCGGCCTGGATTTGGGCACCATCAGAGGCGCCGTCAACAACGCCTGCCGGATTTCCGAGGTGAGGAGGGACTTCGGGTCGTTCAGCAAATACGTGTGGGCGTTC GTAAACAACAAGCCGCTGTCGCCGAGCTACAAATACAGCCGGAAGATCCCGGTGAAGACGTCCAAGTCGGAGTCGATCAGCAAGGACATGGTGCGGCGCGGCTTCCGGTT CGTCGGCCCCACCGTCAT CCACTCGTTCATGCAGGCCGTCGGGCTCACCAACGACCACCTCGTGTCATGCCCGCGCCACCGCGTCTGC TCCTCCT CCTCCGCTTAACCGATCTGACCATCGCCAAAACAGTTACCGGCCAGCTCCCCGAAGGAAGCAAGGAG AAAAAACAAGAAGGAAAGAGAAAAAGTGAGAGATGAGATAGCCTCAAGTAGTAGTATACAGAACGGGTATTGATTTGCGAGTGTGTGTATGTGTGTGCTTGTGTAGATTATTGTCCCTAACTAGGCAAGAAGCTTGATTGT ] [-] EMBL CB649998 [ GAAGCGATGCAGCTTCATCACTCCATATTCAGACCCCCTGTACGTCGCCTACCACGACGAGGAGTGGGGTGTGCCCGTGCGCGACGACGAGTTGCTGTTCGAGATGCTCACGTTGTCCGGCGTGCAAGTCGGGGCGGACTGGACCTCGATCCTGAAGAGGAGACACGTCTACAGGGAGGCATTCTCCGGTTTCAACGTGGACGCTGTCGCCAAGTACACGGAGAAGCAGATGGCATCGCTAAG CGCCGAGTTCGGCCTGGATTTGGGCACCATCAGAGGCGCCGTCAACAACGCCTGCCGGATTTCCGAGGTGAGGAGGGACTTCGGGTCGTTCAGCAAATACGTGTGGGCGTTC GTAAACAACAAGCCGCTGTCGCCGAGCTACAAATACAGCCGGAAGATCCCGGTGAAGACGTCCAAGTCGGAGTCGATCAGCAAGGACATGGTGCGGCGCGGCTTCCGGTT CGTCGGCCCCACCGTCAT CCACTCGTTCATGCAGGCCGTCGGGCTCACCAACGACCACCTCGTGTCATGCCCGCGCCACCGCGTCTGC TCCTCCT CCTCCGCTTAACCGATCTGACCATCGCCAAAACAGTTACCGGCCAGCTCCCCGAAGGAAGCAAGGAGAAAAAAACAAGAAGGAAAGAGAAAAAGTGAGAGATGAGATAGCCTCAAGTAGTAGTATACAGAACGGGTATTGATTTGCGAGTGTGTGTATGTGTGTGCTTGTGTAGATTATTGTCCCTAACTAGGCAAGAAGCTTGATTGT ] [+] EMBL BI806224 [ CTAAGCCCCCGAGTTCGGCCTGGATTTGGCCACCATCAGAGGC CCGTCAACAACGCCTGCCGGATTTCCGAGGTGAGGAGGGACTTCGGGTCGTTCAGCAAATACGTGTGGGCGTTCTGTAAACAACAA CCGCTGTCGCCGAGCTACAAATACAGCCGGAAGATCCCGGTGAAGACGTCCAAGTCGGAGTCGATCAGCAAGGACATGGTGCGGCACGGCTTCCGGTT CGTC GCCCCACCGTCAT CCACTCGTTCATGCA GCC TCGGGCTCACCAACGACCACCTCGTGTCATGCCCGCGCCACCGCGTCTGCGTCCTCCT CCTCCGCTTAACCGATCTGACCATCCCAAAAACAGTTACC GCCAGCTCCCCGAAGGAAGCAAGGAG AAAAAACAAGAAGGAAAGAGAAAAAGTGAGAGATGAGATA CCTCAAGTAGTAGTATACAGAACGGGTATTGATTTGCGAGTGTGTGTATGTGTGTGCTTGTGTAGATTATTGTCCCTAACTAGGCAAGAAGCTTGATTGTCAATTACGTA AAAAAAAAA ] [+] EMBL AU033124 [ GTCNAAGTCGGAGTCGATCAGCAAGGACATGGTGCGGCGCGGCTTCCGGTT CGTCGGCCCCACCGTCAT CCACTCGTTCATGCAGGCCGTCGGGCTCACCAACGACCACCTCGTGTCATGCCCGCGCCACCGCGTCTGC TCCTCCT CCTCCGCTTAACCGATCTGACCATCGCCAAAACAGTTACCGGCCAGCTCCCCGAAGGAAGCAAGGAG AAAAAACAAGAAGGAAAGAGAAAAAGTGAGAGATGAGATAGCCTCAAGTAGTAGTATACAGAACGGGTATTNATTTGCGAGTGTGTGTATGTGTGTGCTTGTGTAGATTATTGTCCCTAACTAGGCAAGAAGCTTGATTGTCAATTACGT ] [+] EMBL AU097252 [ tcgGATCAACAAGGACATGGTTCGGCGCGGCTTCCGGTN CGTCGGCCCCACCGTNATCCCACTCG TCATGCAGGCCGTCGGGCTCACCAACGACCACCTCGTGTCATGCCCGCGCCACCGCGTCTGC TCCTCCTCCCTNCGCTTAACCGATCTGACCATCGCCAAAACAGTTACCGGCCAGCTCCCCGAAGGAAGCAAGGAG AAAAAACAAGAAGGAAAGAGAAAAAGTGAGAGATGAGATAGCCTCAAGTAGTAGTATACAGAACGGGTATTGATTTGCGAGTGTGTGTATGTGTGTGCTTGTGTAGATTATTGTCCCTAACTAGGCAAGAAGCTTGATTGTCAATTACGTA ] [+] EMBL AU033044 [ GTTCCGTCGGCCCCACCGTCAN CCACTCGTTCATGCAGGCCGTCGGGCTCACCAACGACCACCTCGTGTCATGCCCGCGCCACCGCGTCTGC TCCTCCT CCTCCGCTTAACCGATCTGACCATCGCCAAAACAGTTACCGGCCAGCTCCCCGAAGGAAGCNAGGAG AAAAAACAAGAAGGAAAGAGAAAAAGTNAGAGATGAGATANCCTCAAGTAGTAGTATACAGAACGGGTATTNATTTGCGAGTGTGTGTATGTGTGTGCTTGTGTAGATTATTGTCCCTAACTAGGCAAGAANCTTGATTGTCAAaaaaaaaaa ] [+] EMBL AU175161 [ GTCAT CCACTCGTTCATGCAGNCCGTCGGGCTCACCAACGACCACCTCGTGTCATGCCCGCGCCACCGCGTCTGC TCCTCCT CCTCCGCTTAACCGATCTGACCATCGCCAAAACAGTTACCGGCCAGCTCCCCGAAGGAAGCAAGGAG AAAAAACAAGAAGGAAAGAGAAAAAGTGAGAGATGAGATAGCCTCAAGTAGTAGTATACAGAACGGGTATTGATTTGCGAGTGTGTGTATGTGTGTGCTTGTGTAGATTATTGTCCCTAACTAGGCAAGAAGCTTGATTGTCAATTACGTA ] [+] EMBL AU033147 [ GTGNCATGCCCGCGCCAACGCGTCTGC TCCTCCT NCTCCGCTTAACCGATCTGACCATCGCCAAAACAGTTACCGGCCAGCTCCCCGAAGGAAGCAAGGAG AAAAAACAAGAAGGAAAGAGAAAAAGTGAGAGATGAGATAGCCTCAAGTAGTAGTATACAGAACGGGTATTGATTTGCGAGTGTGTGTATGTGTGTGCTTGTGTAGATTATTGTCCCTAACTAGGCAAGAAGCTTGATTGTCAATTACGT ] consensusID : consensus_15663#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 921 fasta sequence [TCGGAAGTCGATCAGCAAGGACATGGTTCCGGCGCGGCTTCCGGGTTCCGTCGGCCCCCACCGTCATCCACTCGTTCATGCAGGCCCGTCGGGCTCACCAACGACCACCTCGTGTCATGCCCCGCGCCACCGCGTCTGCTCCTCCTCCTCCGCTTAACCGATCTGACCATCGCCAAAACAGTTACCGGCCAGCTCCCCGAAGGAAGCAAGGAGAAAAAACAAGAAGGAAAGAGAAAAAGTGAGAGATGAGATAGCCTCAAGTAGTAGTATACAGAACGGGTATTGATTTGCGAGTGTGTGTATGTGTGTGCTTGTGTAGATTATTGTCCCTAACTAGGCAAGAAGCTTGATTGTCAATTACGTACGTATCACTTGGTGCGTGTCTTTCTTTTTTCTCTTTCCTTCATGTCTCGAGATAGAGATAGGGTGACGATCATTAGCGGGGTGGGCTACCCCAATCCCCAGTGCATGTGGCTTGATTAAAGCGGGATGAGATAGGCTCACAGTCACACAGGCAGGCAAGCAAGCAGGGTCAGGCCATGTGCTGCCGGCAAGCGCATGTGTAGGTGAGAGAGGGAGGGGAAGAAAAGCCTGCGCATGTGACACTGCAGCTCTTGCCCTCGCTAGCTCGTCCGTCCACCCGTCCGCGCTGTGCGCGCAGATGGGCGGACGCAGCGACGGACCCAGCCAGTGCACCATCCGGGCCACCGCGACACGCAAACACCTCCGGGCAGCCATGTCCACCGGGCCATTACTCCGCATGCACCATGCGCTGTATCATAGGATTTTCATCTCCGTTCCATCACGAGCTCGCGACGACCAAGCTGGAAATACGGCATCTATAAACGTCACCAAAATGTACCGGCCAGCAGGGTGGATCCAGGAACAAAATTTTTTTTTTGAGGGGCTCAATTACACTGT] [+] EMBL AU066089 [TCGGAAGTCGATCAGCAAGGACATGGTTCCGGCGCGGCTTCCGGGTTCCGTCGGCCCCCACCGTCATCCACTCGTTCATGCAGGCCCGTCGGGCTCACCAACGACCACCTCGTGTCATGCCCCGCGCCACCGCGTCTGCTCCTCCTCCTCCGCTTAACCGATCTGACCATCGCCAAAACAGTTACCGGCCAGCTCCCCGAAGGAAGCAAGGAGAAAAAACAAGAAGGAAAGAGAAAAAGTGAGAGATGAGATAGCCTCAAGTAGTAGTATACAGAACGGGTATTGATTTGCGAGTGTGTGTATGTGTGTGCTTGTGTAGATTATTGTCCCTAACTAGGCAAGAAGCTTGATTGTCAATTACGTACGTATCACTTGGTGCGTGTCTTTCTTTT ] [+] EMBL AU066087 [ TCGATCAGCAAGGACATGG TNCGGCGCGGCTTCC GGTT CGTCGG CCCCACCGTCATCAACTCGTTCATGCAGG CCGTCGGGCTCACCAACGACCACCTCGTGTCATG CCCGCGCCACCGCGTCTGCTCCTCCTCCTCCGCTTAACCGATCTGACCATCGCCAAAACAGTTACCGGCCAGCTCCCCGAAGGAAGCAAGGAGAAAAAACAAGAAGGAAAGAGAAAAAGTGAGAGATGAGATAGCCTCAAGTAGTAGTATACAGAACGGGTATTGATTTGCGAGTGTGTGTATGTGTGTGCTTGTGTAGATTATTGTCCCTAACTAGGCAAGAAGCTTGATTGTCAATTACGTACGTATCACTTGGTGCGTGTCTTTCTTTT ] [-] EMBL OSS3794A [ CCTCCTCCGCTTAACCGATCTGACCATCGCCAAAACAGTTACCGGCCAGCTCCCCGAAGGAAGCAAGGAGAAAAAACAAGAAGGAAAGAGAAAAAGTGAGAGATGAGATAGCCTCAAGTAGTAGTATACAGAACGGGTATTGATTTGCGAGTGTGTGTATGTGTGTGCTTGTGTAGATTATTGTCCCTAACTAGGCAAGAAGCTTGATTGTCAATTACGTACGTATCACTTGGTGCGTGTCTTTCTTTTT ] [+] EMBL AK111361 [ GGCAAGAAGCTTGATTGTCAATTACGTACGTATCACTTGGTGCGTGTCTTTCTTTTTTCTCTTTCCTTCATGTCTCGAGATAGAGATAGGGTGACGATCATTAGCGGGGTGGGCTACCCCAATCCCCAGTGCATGTGGCTTGATTAAAGCGGGATGAGATAGGCTCACAGTCACACAGGCAGGCAAGCAAGCAGGGTCAGGCCATGTGCTGCCGGCAAGCGCATGTGTAGGTGAGAGAGGGAGGGGAAGAAAAGCCTGCGCATGTGACACTGCAGCTCTTGCCCTCGCTAGCTCGTCCGTCCACCCGTCCGCGCTGTGCGCGCAGATGGGCGGACGCAGCGACGGACCCAGCCAGTGCACCATCCGGGCCACCGCGACACGCAAACACCTCCGGGCAGCCATGTCCACCGGGCCATTACTCCGCATGCACCATGCGCTGTATCATAGGATTTTCATCTCCGTTCCATCACGAGCTCGCGACGACCAAGCTGGAAATACGGCATCTATAAACGTCACCAAAATGTACCGGCCAGCAGGGTGGATCCAGGAACAAAATTTTTTTTTTGAGGGGCTCAATTACACTGT] consensusID : consensus_15663#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 343 fasta sequence [CCACTCGTTCATGCAGGCCGTCGGGCTCACCAACGACCACCTCGTGGTCATGCCCGCGCCACCGCGTCTGCTCCTCCTCCTCCGCTTAACCGATCTGACCATCGCCAAAACAGTTACCGGCCAGCTCCCCGAAGGAAGCAAGGAGAAAAAACAAGAAGGAAAGAGAAAAAGTGAGAGATGAGATAGCCTCAAGTAGTAGTATACAGAACGGGTATTGATTTGCGAGTGTGTGTATGTGTGTGCTTGTGTAGATTATTGTCCCTAACTAGGCAAGAAGCTTGATTGTCAATTACGTACGTATCACTTGGTGCGTGTCTTTCTTTAAAAAAAAAAAAAAAAAAAA] [+] EMBL CA998287 [CCACTCGTTCATGCAGGCCGTCGGGCTCACCAACGACCACCTCGTGGTCATGCCCGCGCCACCGCGTCTGCTCCTCCTCCTCCGCTTAACCGATCTGACCATCGCCAAAACAGTTACCGGCCAGCTCCCCGAAGGAAGCAAGGAGAAAAAACAAGAAGGAAAGAGAAAAAGTGAGAGATGAGATAGCCTCAAGTAGTAGTATACAGAACGGGTATTGATTTGCGAGTGTGTGTATGTGTGTGCTTGTGTAGATTATTGTCCCTAACTAGGCAAGAAGCTTGATTGTCAATTACGTACGTATCACTTGGTGCGTGTCTTTCTTTAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15663#1 ------------------------------------------------------------ consensus_15663#2 ------------------------------------------------------------ consensus_15663#0 TTCCTCGAGCACTGTTGGCCTACTGGCCAACTCACATCTCATCTCTTCGCTGCTGCTACT 60 consensus_15663#1 ------------------------------------------------------------ consensus_15663#2 ------------------------------------------------------------ consensus_15663#0 CGAAGCGCACATATTCCCGGAGTTAAATCATCGGTACACCGTCTCAGAGCATTTTTCTCC 120 consensus_15663#1 ------------------------------------------------------------ consensus_15663#2 ------------------------------------------------------------ consensus_15663#0 TCACGGACAAGATGTGCAACTCCAACGTGAAGTCCGCCGGCGTCGCTCAGATCGACGGCC 180 consensus_15663#1 ------------------------------------------------------------ consensus_15663#2 ------------------------------------------------------------ consensus_15663#0 GCCCGGTGCTGCAGCCGGCGGGGAACCGCGTGGCGGCGCCTGAAGCTGCCCGGCCGCTCA 240 consensus_15663#1 ------------------------------------------------------------ consensus_15663#2 ------------------------------------------------------------ consensus_15663#0 AGAAGTCCCTGCAGAAGTCGCTCTCCATGCCGGCTTCGCTCGACAATGCTGCGGCCGCGA 300 consensus_15663#1 ------------------------------------------------------------ consensus_15663#2 ------------------------------------------------------------ consensus_15663#0 CCACCTGCGCGGCGTCCCCCGAGAAGTCCCGCGCCGCCGACTTCGCCCGCGCTGCGGCGG 360 consensus_15663#1 ------------------------------------------------------------ consensus_15663#2 ------------------------------------------------------------ consensus_15663#0 CGTCTCTTCTCCCACCACCTACTCCAGCTTCGGTCAGTGCTAAGGCGACGAGGGTGTCTG 420 consensus_15663#1 ------------------------------------------------------------ consensus_15663#2 ------------------------------------------------------------ consensus_15663#0 GAGCCAAGGTGGCTGCCGCCAGGACTGCGGCGGCGGCTGCGGCCATGGGGGGCTTGGACA 480 consensus_15663#1 ----TCGGAAGTCGATCAGCAAGGACA---------TGGTTCCGGCG----CGGCTTCCG 43 consensus_15663#2 ------------------------------------------------------------ consensus_15663#0 GGAGCAGGAAGCCCGCCAAGAAGGGCGGCGCCGCCGTGCTGCCGGTGGTGACGTTCGCGG 540 consensus_15663#1 GGTTC----CGTCGGCCCCCACCGTCATCCACTCGTTCATGCAG-----GCCCGTCGGGC 94 consensus_15663#2 ----------------------------CCACTCGTTCATGCAG-----GCC-GTCGGGC 26 consensus_15663#0 GGCTCGAGGCGTACGAGCCCGCCGGGAGCATCGCGGCGGCGCAGCGGGAGCACGTCGCGA 600 * * ** **** ** **** * consensus_15663#1 TCACCAACGACCACCTCGTG-T-CATGCCCCGCGCCAC---CGCGTCTGCTCCTCCTCCT 149 consensus_15663#2 TCACCAACGACCACCTCGTGGT-CATGCCC-GCGCCAC---CGCGTCTGCTCCTCCTCCT 81 consensus_15663#0 TGGCGCAGGCGCAGCGCAAGATGCGGATCGCGCACTACGGCCGCACCGCGTCCTTCTCCC 660 * * * * ** * * * * * * ** * ** *** * **** **** consensus_15663#1 CCGCTTAACCGATC-TGACCATCGCCAAAACAGTTACCGGCCAGCTCCCCGAAGGAAGCA 208 consensus_15663#2 CCGCTTAACCGATC-TGACCATCGCCAAAACAGTTACCGGCCAGCTCCCCGAAGGAAGCA 140 consensus_15663#0 GAGTCGAAGGGAAAGTCAGCGCTACCGCGACGGGTGCCGCCGAGCTCGTCGCCGGTGCCG 720 * ** ** * * * ** ** * * *** * ***** ** ** * consensus_15663#1 --AGGAGAAAAAACAAGAAGGAAAG-AGAAAAAGTGAGAGATGAGATAGCCTCAAGTA-G 264 consensus_15663#2 --AGGAGAAAAAACAAGAAGGAAAG-AGAAAAAGTGAGAGATGAGATAGCCTCAAGTA-G 196 consensus_15663#0 TCACCGGGCATGACGAGAAGCGATGCAGCTTCATCACTCCATATTCAGACCCCCTGTACG 780 * * * ** ***** * * ** * ** ** * *** * consensus_15663#1 TAGTATAC-AGAACGGGTATTGATTTGCGAGTGTGTGT----ATGTGT-----------G 308 consensus_15663#2 TAGTATAC-AGAACGGGTATTGATTTGCGAGTGTGTGT----ATGTGT-----------G 240 consensus_15663#0 TCGCCTACCACGACGAGGAGTGGGGTGTGCCCGTGCGCGACGACGAGTTGCTGTTCGAGA 840 * * *** * *** * * ** ** * *** * * * ** consensus_15663#1 TGCTTGTGTAGATTATTGTCCCTAACTAGGCAA---GAAGCTTGATTGTCAATTACGTAC 365 consensus_15663#2 TGCTTGTGTAGATTATTGTCCCTAACTAGGCAA---GAAGCTTGATTGTCAATTACGTAC 297 consensus_15663#0 TGCTCACGTTGTCCGGCGTGCAAGTCGGGGCGGACTGGACCTCGATCCTGAAGAGGAGAC 900 **** ** * ** * * *** * * ** *** * ** ** consensus_15663#1 GTATCACTTGGTGCGTGTCTTTCTTTTTTCTC-------TTTCCTTCATGTCTCGAGATA 418 consensus_15663#2 GTATCACTTGGTGCGTGTCTTTCTTT---------------------AAAAAAAAAAAAA 336 consensus_15663#0 ACGTCTACAGGGAGGCATTCTCCGGTTTCAACGTGGACGCTGTCGCCAAGTACACGGAGA 960 ** ** * * * * * * * * consensus_15663#1 GAGATAGGGTGACGATCATTAGCGGGGTGGGCT--ACCCCAATCCCCAGTGCATGTGGCT 476 consensus_15663#2 AAAAAAA----------------------------------------------------- 343 consensus_15663#0 AGCAGATGGCATCGCTAAGCGCCGAGTTCGGCCTGGATTTGGGCACCATCAGAGGCGCCG 1020 * * consensus_15663#1 TGATTAAAGC-------------GGGATGAGATAGG-CTCACAGTCACACAGGCAG-GCA 521 consensus_15663#2 ------------------------------------------------------------ consensus_15663#0 TCAACAACGCCTGCCGGATTTCCGAGGTGAGGAGGGACTTCGGGTCGTTCAGCAAATACG 1080 consensus_15663#1 AGCAAGCAGGGTCAGGCCATG---TGCTGCCGGCAAGC-GCATGTGTAGGTGAGAGAGGG 577 consensus_15663#2 ------------------------------------------------------------ consensus_15663#0 TGTGGGCGTTCGTAAACAACAAGCCGCTGTCGCCGAGCTACAAATACAGCCGGAAGATCC 1140 consensus_15663#1 AGGGGAAGAA----AAGCCTGCGC--AT--GTGACACTGCAGCTCT-TGCCCTCGCTAGC 628 consensus_15663#2 ------------------------------------------------------------ consensus_15663#0 CGGTGAAGACGTCCAAGTCGGAGTCGATCAGCAAGGACATGGTGCGGCGCGGCTTCCGGT 1200 consensus_15663#1 TCGTCCGTCCACCCGTC-CGCGCT-GTGCGCGCAGATGGGCGGACGCAGCGACGGACCCA 686 consensus_15663#2 ------------------------------------------------------------ consensus_15663#0 TCGTCGGCCCCACCGTCATCCACTCGTTCATGCAGGCCGTCGGGCTCACCAACGA--CCA 1258 consensus_15663#1 GCCAGTGCACCATCCGGGCCACCGCGAC-ACGCAAACACCTCCGGGCAGCCA---TGTCC 742 consensus_15663#2 ------------------------------------------------------------ consensus_15663#0 CCTCGTGTCATGCCCGCGCCACCGCGTCTGCTCCTCCTCCTCCGCTTAACCGATCTGACC 1318 consensus_15663#1 ACCG---GGCCATTACTCCGCATGCACCATGCGCTGTATCAT-AGGATTTTCATCTCCGT 798 consensus_15663#2 ------------------------------------------------------------ consensus_15663#0 ATCGCCAAAACAGTTACCGGCCAGCTCCCCGAAGGAAGCAAGGAGAAAAAACAAGAAGGA 1378 consensus_15663#1 TCCATCACGAGCTCGCGACGACCAAGCTGGAAATA-CGGCATCTATAAACGTCACCAAAA 857 consensus_15663#2 ------------------------------------------------------------ consensus_15663#0 AAGAGAAAAAGTGAGAGATGAGATAGCCTCAAGTAGTAGTATACAGAACGGGTATTGATT 1438 consensus_15663#1 TGTACCGGCCAGCAGG-GTGGATCCAGGAACAAAATTTTTTTTT-TGAGGGGCTCAATTA 915 consensus_15663#2 ------------------------------------------------------------ consensus_15663#0 TGCGAGTGTGTGTATGTGTGTGCTTGTGTAGATTATTGTCCCTAACTAGGCAAGAAGCTT 1498 consensus_15663#1 CACTGT-------------------------------------- 921 consensus_15663#2 -------------------------------------------- consensus_15663#0 GATTGTCAATTACGTACGAAAAAAAAAAAAAAAAAAGGCCACAT 1542 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||