These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15664#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 20 consensus length = 766 fasta sequence [CAGAAACCGATAAGGGACACGAAACAGGGGAATCCGGAGCAAAGTGCGACGCGAGCGCGCGAGGAAGCAGCAGCCATGGCGCTCTCCCTCTCCACCTCCTTCCTCCCGACCCAAGCCGCCGCGGCGGCC-ACGAGGACCACCCTCCGCTCCCTCGTCCCCTCCCAGAGGATGCGGTGCTCGATGCGGAAGAAGGGGCTGCACCCGGAGATCTACGAGGACGCG-AAGGTGTACTGCAACGGGGAGCTGGTGCTGGTGA-CGGGGGGAACCAAGCCGGAGTACACGGTGGACGTGT--GGTCGGGGAA-CCACCCCTACTACGTCGGCGACACGTCGGCGATGGTCGTCATGGAC-AGCCAGA-TCGAG-AAGTTCCGCAAGAAGTGGGGCCACATCAAGGAGTACTGGCCCGAGGACCA-GTGGAGGGAGATGCACCCCGA-CGGCGA-CCCGGAGTTCGACCCGGAGGAGGAGGGATCCGCCGGCGCCAGCTGAGC-CCCCGCTTCGCCTCTCGCC-TCC-GCCGCCGGCC-TCGCC-GGTGCGGTTTCTCTTGGTTGATT-T-TGGGAATTG-CGTAAAATGGATTAGCTCCTCT-TGCTTGCGCCTC-TCGTTACACGTGCATTCGC-ATTGCTCTCTAGGTGTTCGATCGGTGTTCT-CAGTGGAT-ACGT-GTGA-TCATATT-TGTGGTATCGAACTGTTTGTTCTCTGCCTGTACTCTTTGACATCGATATAAAATGGAGATATTGCAATTTGCACACTCTGTAAAAAAAAAAAAAAAAAAAACACT] [+] EMBL AK062051 [CAGAAACCGATAAGGGACACGAAACAGGGGAATCCGGAGCAAAGTGCGACGCGAGCGCGCGAGGAAGCAGCAGCCATGGCGCTCTCCCTCTCCACCTCCTTCCTCCCGACCCAAGCCGCCGCGGCGGCC ACGAGGACCACCCTCCGCTCCCTCGTCCCCTCCCAGAGGATGCGGTGCTCGATGCGGAAGAAGGGGCTGCACCCGGAGATCTACGAGGACGCG AAGGTGTACTGCAACGGGGAGCTGGTGCTGGTGA CGGGGGGAACCAAGCCGGAGTACACGGTGGACGTGT GGTCGGGGAA CCACCCCTACTACGTCGGCGACACGTCGGCGATGGTCGTCATGGAC AGCCAGA TCGAG AAGTTCCGCAAGAAGTGGGGCCACATCAAGGAGTACTGGCCCGAGGACCA GTGGAGGGAGATGCACCCCGA CGGCGA CCCGGAGTTCGACCCGGAGGAGGAGGGATCCGCCGGCGCCAGCTGAGC CCCCGCTTCGCCTCTCGCC TCC GCCGCCGGCC TCGCC GGTGCGGTTTCTCTTGGTTGATT T TGGGAATTG CGTAAAATGGATTAGCTCCTCT TGCTTGCGCCTC TCGTTACACGTGCATTCGC ATTGCTCTCTAGGTGTTCGATCGGTGTTCT CAGTGGAT ACGT GTGA TCATATT TGTGGTATCGAACTGTTTGTTCTCTGCCTGTACTCTTTGACATCGATATAAAATGGAGATATTGCAAT ] [+] EMBL OSS10811A [ GAAACCGATAAGGGACACGAAACAGGGGAATCCGGAGCAAAGTGCGACGCGAGCGCGCGAGGAAGCAGCAGCCATGGCGCTCTCCCTCTCCACCTCCTTCCTCCCGACCCAAGCCGCCGCGGCGNNC ACGAGGACCANCCTCCGNTCCCTCGTCCCCTCCCAGAGGATNCGGTGCTCGATGCGGAAGAAGGGGCTGCANCCGGAGATNTACGAGGACGCG AAGGTTTACTNCAACGGGGAGCTNGTNCTNGTGA CGGGGGGAACCAAGCCGGAGTACACGGTNGACGTTTTNGTTGGGGGAA CCAa ] [+] EMBL OSS15667A [ GGGGAATCCGGAGCAAAGTGCGACGCGAGCGCGCGAGGAAGCAGCAGCCATGGCGCTCTCCCTCTCCACCTCCTTCCTCCCGACCCAAGCCGCCGCGGCGGCC ACGAGGACCACCCTCCGCTCCCTCGTCCCCTCCCAGAGGATGCGGTGCTCGATGCGGAAGAAGGGGCTGCACCCGGAGATCTACGAGGACGCG AAGGTGTACTGCAACGGGGAGCTGGTGCTGGTGA CGGGGGGAACCAAGCCGGAGTACACGGTGGACGTNT GGTCGGGGAA CCACCCCTACTACGTCGGCGACACGTCGGCGATGGTCGTCATGGACAAGCCAGA TCGAGAAAGTTCCGCAAGAAGTTGGGCCACATC ] [+] EMBL CF335464 [ GAATCCGGAGCAAAGTGCGACGCGAGCGCGCGAGGAAGCAGCAGCCATGGCGCTCTCCCTCTCCACCTCCTTCCTCCCGACCCAAGCCGCCGCGGCGGCC ACGAGGACCACCCTCCGCTCCCTCGTCCCCTCCCAGAGGATGCGGTGCTCGATGCGGAAGAAGGGGCTGCACCCGGAGATCTACGAGGACGCG AAGGTGTACTGCAACGGGGAGCTGGTGCTGGTGA CGGGGGGAACCAAGCCGGAGTACACGGTGGACGTGT GGTCGGGGAA CCACCCCTACTACGTCGGCGACACGTCGGCGATGATCGTCATGGAC AGCCAGA TCGAG AAGTTCCGCAAGAAGTGGGGCCACATCAAGGAGTACTGGCCCGAGGACCA GTGGAGGGAGATGCACCCCGA CGGCGA CCCGGAGTTCGACCCGGAGGAGGAGGGATCCGCCGGCGCCAGCTGAGC CCCCGCTTCGCCTCTCGCC TCC GCCGCCGGCC TCGCCGGGTGCGGTTTCTCTTGGTTGATT T TGGGAATTG CGTAAAATGGATTAGCTCCTCT TGCTTGCGCCTC TCGTTACACGTGCATT ] [+] EMBL AU096888 [ AGTGCGACGCGAGCGCGCGAGGAAGCAGCAGCCATGGCGCTCTCCCTCTCCACCTCCTTCCTCCCGACCCAAGCCGCCGCGGCGGCC ACGAGGACCACCCTCCGCTCCCTCGTCCCCTCCCAGAGGATGCGGTGCTCGATGCGGAAGAAGGGGCTGCACCCGGAGATCTACGAGGACGCG AAGGTGTACTGCAACGGGGAGCTGGTGCTGGTGA CGGGGGGAACCAAGCCGGAGTACACGGTGGACGTGT GGTCGGGGAA CCACCCCTACTACGTCGGCGACACGTCGGCGATGGTCGTCATGGAC AGCCAGA TCG ] [+] EMBL AU095757 [ gCGCCGCGGCGGCCAACGAGGACCACCCTCCG TCCCTCGTCCCATCCCAGAGGATGCGGTGCTCGATGCGGAAGAAGGGGCTGCACCCGGAGATCTACGAGGACGCG AAGGTGTACTGCAACGGGGAGCTGGTGCTGGTGA CGGGGGGAACCAAGCCGGAGTACACGGTGGACGTGT GGTCGGGGAA CCACCCCTACTACGTCGGCGACACGTCGGCGATGGTCGTCATGGAC AGCCAGA TCGAG AAGTTCCGCAAGAAGTGGGGCCACATCAAGGAGTACTGGCCCGAGGACCA GTGGAGGGAGATGCACCCCGA CGGCGA CCCGGAGTTCGACCCGGAGGAGGAGGGATCCGCCGGCGCCAGCTGAGC CCCCG TTCGCNTCTCGCC TCC GCCGCCGGCC TCGCC GGTGCGGTTTCTCTTGGTTGATT T TGGGAATTG CGTAAAATGGATTAGCTCCTCT TG TTGCGCCTC TC TTACACGTGCATTCGC ATTGCTCTCTAGGTGTTCGATCGGTGTTCT CAGTGGAT ACGT GTGA TCATATT TGTGGTATCGAACTGTTTGTTCTCTGCCTGTACTCTTTGACATCGATATAAAATGGAGATATTGCAA AAA AAAAAAAAAAAAA ] [+] EMBL BE230626 [ GCCGCGGCGGCC ACGAGGACCACCCTCCGCTCCCTCGTCCCCTCCCAGAGGATGCGGTGCTCGATGCGGAAGAAGGGGCTGCACCCGGAGATCTACGAGGACGCG AAGGTGTACTGCAACGGGGAGCTGGTGCTGGTGA CGGGGGGAACCAAGCCGGAGTACACGGTGGACGTGT GGTCGGGGAA CCACCCCTACTACGTCGGCGACACGTCGGCGATGGTCGTCATGGAC AGCCAGA TCGAG AAGTTCCGCAAGAAGTGGGGCCACATCAAGGAGTACTGGCCCGAGGACCA GTGGAGGGAGATGCACCCCGA CGGCGA CCCGGAGTTCGACCCGGAGGAGGAGGGATCCGCCGGCGCCAGCTGAGC CCCCGCTTCGCCTCTCGCC TCC G CGCCGGCC TCGCC GGTGCGGTTTCTCTTGGTTGATT T TGGGAATTG CGTAAAATGGATTAGCTCCTCT TGCTTGCGCCTC TCGTTACACGTGCATTCGC ATTGCTCTCTAG ] [+] EMBL BE230624 [ GCCGCGGCGGCC ACGAGGACCACCCTCCGCTCCCTCGTCCCCTCCCAGAGGATGCGGTGCTCGATGCGGAAGAAGGGGCTGCACCCGGAGATCTACGAGGACGCG AAGGTGTACTGCAACGGGGAGCTGGTGCTGGTGA CGGGGGGAACCAAGCCGGAGTACACGGTGGACGTGT GGTCGGGGAA CCACCCCTACTACGTCGGCGACACGTCGGCGATGGTCGTCATGGAC AGCCAGA TCGAG AAGTTCCGCAAGAAGTGGGGCCACATCAAGGAGTACTGGCCCGAGGACCA GTGGAGGGAGATGCACCCCGA CGGCGA CCCGGAGTTCGACCCGGAGGAGGAGGGATCCG CGGCGCCAGCTGAGC CCCCGCTTCGCCTCTCGCC T C GCCGCCGGCC TCGCC GGTGCGGGTTCTCTTGGTTGATT T TGGGAATTGCCGTAAAATGGATTAGCTCCTCT TGCTTGCGCCTC TCGTTACACGTGCATTCGCAATTGg ] [+] EMBL AU096889 [ ATGCGGAAGAAGGGGCTGCACCCGGAGATCTACGAGGACGCG AAGGTGTACTGCAACGGGGAGCTGGTGCTGGTGA CGGGGGGAACCAAGCCGGAGTACACGGTGGACGTGT GGTCGGGGAA CCACCCCTACTACGTCGGCGACACGTCGGCGATGGTCGTCATGGAC AGCCAGA TCGAG AAGTTCCGCAAGAAGTGGGGCCACATCAAGGAGTACTGGCCCGAGGACCA GTGNAGGGAGATGCACCCCGA CGGCGA CCCGGAGTTCGACCCGNAGGAGGAGGGATCCGCCGGCGCCAGCTGAGC CCCCGCTTCGCCTNTCGCC TCC GCCGCCGGCC TCGCC GGTGCGGTTTCTCTTGGTTGATT T TGGGAATTG CGTAAAATGGATTAGCTCCTCT TGCTTGCGCCTC TCGTTACACGTGCATTCGC ATTGCTCTCTAGGTGTTCGATCGGTGTTCT CAGTGGAT ACGT GTGA TCATATT TGTGGTATCGAACTGTTTGTTCTCTGCCTGTACTCTTTGACATCGATATAAAATGGAGATATTGCAATTTGCACA AAAAAAAAAAAAAAAAAAA ] [+] EMBL BI799537 [ ATCTACGA GACGCGAAAGTTGTACTGCAACGGGGAGCTGTTGCTGTTGACCGGGGGGAACCAAGCCGGAGTACACGGTGAACGTGT GTTCGGGGAA CCACCCCTACTACGTCGGCGACACGTCGGCGATGCTCGTCATGGAC A CCAGA TCGAG AAGTTCC CAAGAAGT GGGCCACATCAAGGAGTACTGGCCCGAGGACCA GTGGAGGGAGATGCACCCCGA CGGCGACCCCGGAGTTCGACCCGGAGGAGGAGGGATCCGCCGGCGCCAGCTGAGC CCCCGCTTCGCCTCTCGCC TCC GCCGCCGGCC TCGCC GGTGCGGTTTCTCTTGGTTGATT T TGGGAATTG CGTAAAATGGATTAGCTCCTCT TGCTTGCGCCTC TCGTTACACGTGCATTC C ATTGCTCTCTAGGTGTTCGATCGGTGTTCT CAGTGGAT ACGT GTGA TCATATT TGTGGTATCGAACTGTTTGTTCTCTGCCTGTACTCTTTGACATCGATATAAAATGGAGATATT CCATTTGCACA AAAAAAAAA ] [+] EMBL AU070391 [ CTGCAACGGGAAGCTGGTGCTGGTGA CGGGGGGAACCAAGCCGGAGTACACGGTGGACGTGT GGTCGGGGAA CCACCCCTACTACGTCGGCGACACGTCGGCGATGGTCGTCATGGAC AGCCAGA TCGAG AAGTTCCGCAAGAAGTGGGGCCACATCAAGGAGTACTGGCCCGAGGACCA GTGGAGGGAGATGCACCCCGA CGGCGA CCCGGAGTTCGACCCGGAGGAGGAGGGATCCGCCGGCGCCAGCTGAGC CCCCGCTTCGCCTCTCGCC TCC GCCGCCGGCC TCGCC GGTGCGGTTTCTCTTGGTTGATT T TGGGAATTG CGTAAAATGGATTAGCTCCTCT TGCTTGCGCCTC TCGTTACACGTGCATTCGC ATTGCTCTCTAGGTGTTCGATCGGTGTTCT CAGTGGAT ACGT GTGA TCATATT TGTGGTATCGAACTGTTTGTTCTCTGCCTGTACTCTTTGACATCGATATAAAATGGAGATATTGCAATTTGCACACTCTGTAAAAAA ] [+] EMBL AT003454 [ CAAGCCGGAGTACACGGTGGACGTGT GGTCGGGGAA CCACCCCTACTACGTCGGCGACACGTCGGCGATGGTCGTCATGGAC AGCCAGA TCGAG AAGTTCCGCAAAAAGTGGGGCCACATCAAGGAGTACTGGCCCCAGGACCA GTGGAGGGAGATGCACCCCGA CGGCGA CCCGGAGTTCGACCCGGAGGAGGAGGGATCCGCCGGCGCCAGCTGAGC CCCCGCTTCGCCTCTCGCC TCC GCCGCCGGCC TCGCC GGTGCGGTTTCTCTTGGTTGATT T TGGGAATTG CGTAAAATGGATTAGCTCCTCT TGCTTGCGCCTC TCGTTACACGTGCATTCGC ATTGCTCTCTAGGTGTTCGATCGGTGTTCT CAGTGGAT ACGT GTGA TCATATT TGTGGTATCGAACTGTTTGTTCTCTGCCTGTACTCTTTGACATCGATATAAAATGGAGATATTGCAATTTGCACACTCTGTAAAAAAAAAAAAA ] [+] EMBL AU174086 [ GGAACCCCCCCCTANTACGTCGGCGACACGTCGGCGATGGTCGTCATGGAC AGCCAGA TCGAG AAGTTCCGCAAGAAGTGGGGCCACATCAAGGAGTACTGGCCCGAGGACCA GTGGAGGGAGATGCACCCCGA CGGCGA CCCGGAGTTCGACCCGGAGGAGGAGGGATCCGCCGGCGCCAGCTGAGC CCCCGCTTCGCCTCTCGCC TCC GCCGCCGGCC TCGCC GGTGCGGTTTCTCTTGGTTGATT T TGGGAATTG CGTAAAATGGATTAGCTCCTCT TGCTTGCGCCTC TCGTTACACGTGCATTCGC ATTGCTCTCTAGGTGTTCGATCGGTGTTCT CAGTGGAT ACGT GTGA TCATATT TGTGGTATCGAACTGTTTGTTCTCTGCCTGTACTCTTTGACATCGATATAAAATGGAGATATTGCAAaaaa ] [-] EMBL CF335465 [ CACGTCGGCGATGATCGTCATGGAC AGCCAGA TCGAG AAGTTCCGCAAGAAGTGGGGCCACATCAAGGAGTACTGGCCCGAGGACCA GTGGAGGGAGATGCACCCCGA CGGCGA CCCGGAGTTCGACCCGGAGGAGGAGGGATCCGCCGGCGCCAGTTGAGC CCCCGCTTCGCCTCTCGCC TCC GCCGCCGGCC TCGCC GGTGCGGTTTCTCTTGGTTGATT T TGGGAATTG CGTAAAATGGATTAGCTCCTCT TGCTTGCGCCTC TCGTTACACGTGCATTCGC ATTGCTCTCTAGGTGTTCGATCGGTGTTCT CAGTGGAT ACGT GCGA TCATATT TGTGGTATCGAACTGTTTGTTCTCTGCCTGTACTCTTTGACATCGATATAAAATGGAGATATTGCAAaaaa ] [-] EMBL CF293989 [ CACGTCGGCGATGGTCGTCATGGAC AGCCAGA TCGAG AAGTTCCGCAAGAAGTGGGGCCACATCAAGGAGTACTGGCCCGAGGACCA GTGGAGGGAGATGCACCCCGA CGGCGA CCCGGAGTTCGACCCGGAGGAGGAGGGATCCGCCGGCGCCAGTTGAGC CCCCGCTTCGCCTTTCGCC TCC GCCGCCGGCC TCGCC GGTGCGGTTTCTCTTGGTTGATT T TGGGAATTG CGTAAAATGGATTAGCTCCTCT TGCTTGCGCCTC TCGTTACACGTGCATTCGC ATTGCTCTTTAGGTGTTCGATCGGTGTTCT CAGTGGAT ACGT GTGA TCATATT TGTGGTATCGAACCGTTTGTTCTCTGCCTGTACTCTTTGACATCGATATAAAATGGAGATATTCCCATTTGCACACTCTGTAAAAAAAAAAAAAAAAAAAACACT] [+] EMBL BI810079 [ TCGGCGATGGTCGTCATGGAC AGCCAGAGTCGAG AAGTTCCGCAAGAAGTGGGGCCACATCAAGGAGTACTGGCCCGAGGACCATGTGGAGGGAGATGCACCCCGATCGGCGA CCCGGAGTTCGACCCGGAGGAGGAGGGATCCGCCGGCGCCAGCTGAGCACCCCGCTTCGCCTCTCGCC TCCAGCCGCCGGCCTTCGCC GGT CGGTTTCTCTTGGTTGATT T TGGGAATTG CGTAAAATGGATTAGCTCCTCT TGCTTGCGCCTC TCGTTACACGTGCATTCGC ATTGCTCTCTAGGTGTTCGATCGGTGTTCTCCAGTGGATAACGTGGTGA TCATATTGTGTGGTATCGAACT ] [+] EMBL AT003523 [ cgCGGCGATGGTCGTCATGGAC AGCCAGA TCGAG AAGTTCCGCAAGAAGTGGGGCCACATCAAGGAGTACTGGCCCGAGGACCA GTGGAGGGAGATGCACCCCGA CGGCGA CCCGGAGTTCGACCCGGAGGAGGAGGGATCCGCCGGCGCCAGCTGAGC CCCCGCTTCGCCTCTCGCC TCC GCCGCCGGCC TCGCC GGTGCGGTTTCTCTTGGTTGATT T TGGGAATTG CGTAAAATGGATTAGCTCCTCT TGCTTGCGCCTC TCGTTACACGTGCATTCGC ATTGCTCTCTAGGTGTTCGATCGGTGTTCT CAGTGGAT ACGT GTGA TCATATT TGTGGTATCGAACTGTTTGTTCTCTGCCTGTACTCTTTGACATCGATATAAAATGGAGATATTGCAATTTGCACCCTCTGTAAAAAAAAAAAA ] [+] EMBL BM421437 [ CCAGA TCGAG AAGTTCCGCAAGAAGT GGGCCACATCAAGGAGTACTGGCCCGAGGACCA GTGGAGGGAGATGCACCCCGA CGGCGA CCCGGAGTTCGACCCGGAGGAGGAGGGATCCGCCGGCGCCAGCTGAGC CCCCGCTTCGCCTCTCGCC TCC GCCGCCGGCC TCGCC GGTGCGGTTTCTCTTGGTTGATT T TGGGAATTG CGTAAAATGGATTAGCTCCTCT TGCTTGCGCCTC TCGTTACACGTGCATTCGC TTGCTCTCTAGGTGTTCGATCGGTGTTCT CAGTGGAT ACGT GTGA TCATATT TGTGGTATCGAACTGTTTGTTCTCTGCCTGTACTCTTTGACATCGATATAAAATGGAGATATT CCATTTGCNCACTCTGTAAAAAAAAAA ] [+] EMBL AT003760 [ TGGCCCGAGGACCA GT GAAGGANATGCACCCCGA CGGCGA CCCGGAGTTCGACCCGGAGGAGGAGGGATCCNCCGGCGCCAGCTGAGC CCCCGCTTCGCCTNTCGCC TCC GCCGCCGGCC TCGCC GGTGCGGTTTNTCTTGGTTGATT T TGGGAATTG CGTAAAATGGATTAGCTCCTCT TGCTTGCGCCTC TCGTTACACGTGCATTCGC ATTGCTCTCTAGGTGTTCGATCGGTGTTCT CAGTGGAT ACGT GTGA TCATATT TGTGGTATCGAACTGTTTGTTCTCTGCCTGTACTCTTTGACATCGATATAAAATGGAGATATTGCAATTTGCCCNCNCTGTAAAAAAAAAAAA ] [+] EMBL AU162139 [ GCCTTCC GCCG CGGCC TCGCC GGTGCGGTTTCTCTTGGTTGATTNTNTGGGAATTG CGTAAAATGGATTAGCTCCTCTCTG TTGCGCCTCNTCGTTACACGTGCATNCGC ATTGCTCTCTAGGTGTTCGATCGGTGTTCT CAGTGGAT ACGT GTGANNCATATT TGTGGTATCGAACTGTTTGTTCTCTGCCTGTACTCTTTGACATCGATATAAAATGGAGATATTGCAATTTGCACACTCTGTAAAAAAAAA ] consensusID : consensus_15664#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 370 fasta sequence [CATCAAGAAGTNCTGGCCCGAGGNCCAGTGGAGGNANATNCACCCCGNCGGCGACCCGGAGTTTGACCCGGAGGANNANGGATCCCCCGGCNCCAGNTNAGCCCCCGNTTCNCCTTTCGCCTCCGCCGNCGGCCTGGCCGGTGCGGTTTNTTTTGGTTGATTTTGGGAATTGCGTAAAATGGATTAGCTCCTCTTGCTTGCCGCCTCTCGTACACGTGCATTCGCATTGCTCTCTAGGTGTTCGANCGNTGTTCTCAGTGTANACGNNTGNTCATATTTNTGGNNTNNNNCTNGTTGNTNTNTGCCTGTTNTNNTNANNNNNGNTATACAATGGAGTTATCACATATTTTNNCCCCNTNNAAAAAAAAAA] [+] EMBL AT003603 [CATCAAGAAGTNCTGGCCCGAGGNCCAGTGGAGGNANATNCACCCCGNCGGCGACCCGGAGTTTGACCCGGAGGANNANGGATCCCCCGGCNCCAGNTNAGCCCCCGNTTCNCCTTTCGCCTCCGCCGNCGGCCTGGCCGGTGCGGTTTNTTTTGGTTGATTTTGGGAATTGCGTAAAATGGATTAGCTCCTCTTGCTTGCCGCCTCTCGTACACGTGCATTCGCATTGCTCTCTAGGTGTTCGANCGNTGTTCTCAGTGTANACGNNTGNTCATATTTNTGGNNTNNNNCTNGTTGNTNTNTGCCTGTTNTNNTNANNNNNGNTATACAATGGAGTTATCACATATTTTNNCCCCNTNNAAAAAAAAAA] consensusID : consensus_15664#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 323 fasta sequence [ACGCGAGCTCGCGAGGAAGCAGCANCCATGGCGCTCTCCCTCTCCACCTCCTTCCTCCCGACCCAATCCGCCGCGTCGCCCACGAGGACCACCCTCCGCTCCCTCGTCCCCTCCCANAGGATGGGGTNCTCGATGCGGAANAAGGGGCTGCACCCGGAGATCTACGATGACGNAAGGTGTACTNCAACGGGGAGCTGGTGCTGGTGACGGGGGGAACCAAGCCGGAGTACACGGTGGNCGTTGGTCGGGGAACCACCCCTACTACGTCGNCGCACGTCGGCGATGGTCGNCATGGACAAGCATATCGAGAAGTTCCNAAGAAG] [+] EMBL OSC9531 [ACGCGAGCTCGCGAGGAAGCAGCANCCATGGCGCTCTCCCTCTCCACCTCCTTCCTCCCGACCCAATCCGCCGCGTCGCCCACGAGGACCACCCTCCGCTCCCTCGTCCCCTCCCANAGGATGGGGTNCTCGATGCGGAANAAGGGGCTGCACCCGGAGATCTACGATGACGNAAGGTGTACTNCAACGGGGAGCTGGTGCTGGTGACGGGGGGAACCAAGCCGGAGTACACGGTGGNCGTTGGTCGGGGAACCACCCCTACTACGTCGNCGCACGTCGGCGATGGTCGNCATGGACAAGCATATCGAGAAGTTCCNAAGAAG] consensusID : consensus_15664#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 297 fasta sequence [GGGCGACGCGAGCGCGCGAGGAAGCAGCAGCCATGGCGCTCTCCCTTTTCACCTCCTTCCTCCCGACCCAAGCCGCCGCGGCGGCCACGAGGTTTTTTTCCGCTCCCTCGTCCTTTTTTAGAGGATGCGGCGCTCTATTTTTTTTGAAGGGGCTGCACCCGGAGATCTACGAGGACGCGAAGGTGTACTGCAACGGGGAGCTGGTGCTGGTGACGGGGGGAACCAAGCCGGAGTACACGGTGGACGTGTGGTCGGGGAACCACCCCTACTACGTCGGCGACACGTCGGCGATGGTCG] [+] EMBL CF293990 [GGGCGACGCGAGCGCGCGAGGAAGCAGCAGCCATGGCGCTCTCCCTTTTCACCTCCTTCCTCCCGACCCAAGCCGCCGCGGCGGCCACGAGGTTTTTTTCCGCTCCCTCGTCCTTTTTTAGAGGATGCGGCGCTCTATTTTTTTTGAAGGGGCTGCACCCGGAGATCTACGAGGACGCGAAGGTGTACTGCAACGGGGAGCTGGTGCTGGTGACGGGGGGAACCAAGCCGGAGTACACGGTGGACGTGTGGTCGGGGAACCACCCCTACTACGTCGGCGACACGTCGGCGATGGTCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15664#2 ------------------------------------------------ACGCGAGCTCGC 12 consensus_15664#3 -------------------------------------------GGGCGACGCGAGCGCGC 17 consensus_15664#0 CAGAAACCGATAAGGGACACGAAACAGGGGAATCCGGAGCAAAGTGCGACGCGAGCGCGC 60 consensus_15664#1 ---------------------------------CATCAAGAAGTNCTGGCCCGAGGNCCA 27 * **** * consensus_15664#2 GAGGAAGCAGCANCCATGGCGCTCTCCCTCTCCACCTCCTTCCTCCCGACCCAATCCGCC 72 consensus_15664#3 GAGGAAGCAGCAGCCATGGCGCTCTCCCTTTTCACCTCCTTCCTCCCGACCCAAGCCGCC 77 consensus_15664#0 GAGGAAGCAGCAGCCATGGCGCTCTCCCTCTCCACCTCCTTCCTCCCGACCCAAGCCGCC 120 consensus_15664#1 GTGGAGGNAN-ATNCACCCCGNCGGCGACCCGGAGTTTGACCCGGAGGANNANGGATCCC 86 * *** * * * ** ** * * * ** ** ** consensus_15664#2 GCGTCGCCCACGAGGACCAC-CCTCCGCTCCCTCGTCCCCTCCCANA--GGATGGGGTNC 129 consensus_15664#3 GCGGCGGCCACGAGGTTT-T-TTTCCGCTCCCTCGTCCTTTTTTAGA--GGATGCGGCGC 133 consensus_15664#0 GCGGCGGCCACGAGGACCAC-CCTCCGCTCCCTCGTCCCCTCCCAGA--GGATGCGGTGC 177 consensus_15664#1 CCGGCNCCAGNTNAGCCCCCGNTTCNCCTTTCGCCTCCGCCGNCGGCCTGGCCGGTGCGG 146 ** * * * ** ** * * *** ** * * consensus_15664#2 TCGATGCGGAAN-A----AGGGGCTGCACCCGGAGATCTACGATGACGN----AAGGTGT 180 consensus_15664#3 TCTATTTTTTTTGA----AGGGGCTGCACCCGGAGATCTACGAGGACGCG---AAGGTGT 186 consensus_15664#0 TCGATGCGGAAG-A----AGGGGCTGCACCCGGAGATCTACGAGGACGCG---AAGGTGT 229 consensus_15664#1 TTTNTTTTGGTTGATTTTGGGAATTGCGTAAAATGGATTAGCTCCTCTTGCTTGCCGCCT 206 * * * ** *** * ** * * * consensus_15664#2 ACTNCAACGGGGAGCTGGTGCTGGTGACGGGGGG---AACCAAG----CCGGAGTACACG 233 consensus_15664#3 ACTGCAACGGGGAGCTGGTGCTGGTGACGGGGGG---AACCAAG----CCGGAGTACACG 239 consensus_15664#0 ACTGCAACGGGGAGCTGGTGCTGGTGACGGGGGG---AACCAAG----CCGGAGTACACG 282 consensus_15664#1 CTCGTACACGTGCATTCGCATTGCTCTCTAGGTGTTCGANCGNTGTTCTCAGTGTANACG 266 * * * * * ** * * ** * * * * * *** *** consensus_15664#2 GT-GGNCGT-TGGTCGGGGAACCACCC-CTACTACGTCGNCG-CACGTCGGCGATGGTCG 289 consensus_15664#3 GT-GGACGTGTGGTCGGGGAACCACCC-CTACTACGTCGGCGACACGTCGGCGATGGTCG 297 consensus_15664#0 GT-GGACGTGTGGTCGGGGAACCACCC-CTACTACGTCGGCGACACGTCGGCGATGGTCG 340 consensus_15664#1 NNTGNTCATATTTNTGGNNTNNNNCTNGTTGNTNTNTGCCTGTTNTNNTNANNNNNGNTA 326 * * * * ** * * * * * * consensus_15664#2 NCATGGACAAGCATATCGAGAAGTTCCNAAGAAG-------------------------- 323 consensus_15664#3 ------------------------------------------------------------ consensus_15664#0 TCATGGACAGCCAGATCGAGAAGTTCCGCAAGAAGTGGGGCCACATCAAGGAGTACTGGC 400 consensus_15664#1 TACAATGGAGTTATCACATATTTTNNCCCCNTNNAAAAAAAAAA---------------- 370 consensus_15664#2 ------------------------------------------------------------ consensus_15664#3 ------------------------------------------------------------ consensus_15664#0 CCGAGGACCAGTGGAGGGAGATGCACCCCGACGGCGACCCGGAGTTCGACCCGGAGGAGG 460 consensus_15664#1 ------------------------------------------------------------ consensus_15664#2 ------------------------------------------------------------ consensus_15664#3 ------------------------------------------------------------ consensus_15664#0 AGGGATCCGCCGGCGCCAGCTGAGCCCCCGCTTCGCCTCTCGCCTCCGCCGCCGGCCTCG 520 consensus_15664#1 ------------------------------------------------------------ consensus_15664#2 ------------------------------------------------------------ consensus_15664#3 ------------------------------------------------------------ consensus_15664#0 CCGGTGCGGTTTCTCTTGGTTGATTTTGGGAATTGCGTAAAATGGATTAGCTCCTCTTGC 580 consensus_15664#1 ------------------------------------------------------------ consensus_15664#2 ------------------------------------------------------------ consensus_15664#3 ------------------------------------------------------------ consensus_15664#0 TTGCGCCTCTCGTTACACGTGCATTCGCATTGCTCTCTAGGTGTTCGATCGGTGTTCTCA 640 consensus_15664#1 ------------------------------------------------------------ consensus_15664#2 ------------------------------------------------------------ consensus_15664#3 ------------------------------------------------------------ consensus_15664#0 GTGGATACGTGTGATCATATTTGTGGTATCGAACTGTTTGTTCTCTGCCTGTACTCTTTG 700 consensus_15664#1 ------------------------------------------------------------ consensus_15664#2 ------------------------------------------------------------ consensus_15664#3 ------------------------------------------------------------ consensus_15664#0 ACATCGATATAAAATGGAGATATTGCAATTTGCACACTCTGTAAAAAAAAAAAAAAAAAA 760 consensus_15664#1 ------------------------------------------------------------ consensus_15664#2 ------ consensus_15664#3 ------ consensus_15664#0 AACACT 766 consensus_15664#1 ------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||