These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15677#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 20 consensus length = 1271 fasta sequence [CACCGCGGCCACAATATCGCGGGCCTCTCTCCTGCTCGTCTCGTCTCCCTTCCTCCTCGTCTTCGGCGGCGGCGCGGCGGAGATGTTGTCCGGCGACATACCCCCGAACCAGACGGTCTACCTCAGGAACCTCAACGAGAAGGTCAAGAAAGAAGAATTAAAGAGATCACTCTATGCGTTGTGCTCCCAATATGGGAGGATACTGGATGTGGTGGCCTTAAAAACACCTAAACTGAGGGGGCAGGCATGGGTGGTCTTCAGCGAAATTACCGCCGCCACAAATGCTTTCCGTGGACTGCAGGAATTCGATTTTTATGGCAAAAGAATGCGAGTACAATATGCGAAAA-CAA-GATCTGACTGT-CTTGCAACCGAAGATGGTTCTACTGCT-CCAAAAGAGAAAAGAAAGAAGCAAGAGGAGAAAGCAGCGGAGAAAAAACGACGAGCTGAAGAGGCGCAACAATCTGGTCCTAATGCTGCTGCCCAAAGCAATGGGACTGGTTATCAAGCCTCACGCCTGGGCAAGAC-TT-CGCAA-GAGCCACCT--GCACCTCCAAACAATA-T-CCTTTTCA-T-CCAGAACTTACCAGCTGAGACTACAAGCATGATGCTCCAGATCCT-GTTCCAGCAGTACCCTGGTTTCAGGGAAGTCCGGATGATCGAAGCCAAGCCAGGCATTGCTTTT-GTGGAATACGAGGACGACAGCCAGTCTATGGTTGCAATGCAAGCTCTGCAGGGTTTCAAGATCA-CCCCATACAACCCAATGGCTATATCCTACGCAAAGAAGTGAATGATCCATGGGATCCCACAATCTGGCAAGAAAACCTCTGTACTTGTAAGACTTTCCGCCCTTAGCTTTCAAACTGCTGTATCAGTTTTCTAACACTGTATTTTTGGAAAGCAATTGCTTAGTTTAGAAGTCTTTGTTGCTTAAAAAATATTTGGTCTTCATTCTTTTTGTTAACCCTGCTTTTGATGCTGGCATGTCTGGTATTGTGGCCTTTGTAGGCTACATTATCTTTTCTCCTACACTGGTGGTAGAAGTTAGAAGATGTATCCCTCCCTTAAAAGCCAAGAGAAAATCATGCCCCTATATTCCCCTCGTCCATTTTCCTTGGTCAGAGATGAATGAGGTGTATATGCCATATTATATTGCCAAAAATCATAAGTGTCACCTCAGTAGTTGCAGGCATGATGATTGTTGAACACGTATTTTAGTGGTGGGATGGTAGGTTTCGTGGCCTTGTGATTTTATACAATAAAGTGTGCGGCCTTCTACT] [+] EMBL CF294950 [CACCGCGGCCACAATATCGCGGGCCTCTCTCCTGCTCGTCTCGTCTCCCTTCCTCCTCGTCTTCGGCGGCGGCGCGGGGGAGATGTTGTCCGGCGACATACCCCCGAACCAGACGGTCTACCTCAGGAACCTCAACGAGAAGGTCAAGAAAGAAGAATTAAAGAGATCACTCTATGCGTTGTGCTCCCAATATGGGAGGATACTGGATGTGGTGGCCTTAAAAACACCTAAACTGAGGGGGCAGGCATGGGTGGTCTTCANCGAAATTACCGCCGCCACAAATGCTTTCCGTGGACTGCAGGAATTCGATTTTTATGGCAAAAGAATGCGAGTACAATATGCGAAAA CAA GATCTGACTGT CTTGCAACCGAAGATGGTTCTACTGCT CCAAAAGAGAAAAGAAAGAAGCAAGAGGAGAAAGCAGCGGAGAAAAAACGACGAGCTGAAGAGGCGCAACAATCTGGTCCTAATGCTGCT ] [+] EMBL CF293902 [ AATATCGTGGCCCTCTCTCCTGCTCGTCTCGTCTCCCTTCCTCCTCGTCTTCGGCGGCGGCGCGGCGGAGATGTTGTCCGGCGACATACCCCCGAACCAGACGGTCTACCTCAGGAACCTCAACGAGAAGGTCAAGAATTATGAATTAAAGAGATCACTCTATGCGTTGTGCTCCCAATATGGGAGGATACTGGATGTGGTGGCCTTAAAAACACCTAAACTGAGGGGGCAGGCATGGGTGGTCTTCAGCGAAATTACCGCCGCCACAAATGCTTTCCGTGGACTGCAGGAATTCGATTTTTATGGCAAAAGAATGCGAGTACAATATGCGAAAA CAA GATCTGACTGT CTTGC ] [+] EMBL AK103337 [ CTGCTCGTCTCGTCTCCCTTCCTCCTCGTCTTCGGCGGCGGCGCGGCGGAGATGTTGTCCGGCGACATACCCCCGAACCAGACGGTCTACCTCAGGAACCTCAACGAGAAGGTCAAGAAAGAAGAATTAAAGAGATCACTCTATGCGTTGTGCTCCCAATATGGGAGGATACTGGATGTGGTGGCCTTAAAAACACCTAAACTGAGGGGGCAGGCATGGGTGGTCTTCAGCGAAATTACCGCCGCCACAAATGCTTTCCGTGGACTGCAGGAATTCGATTTTTATGGCAAAAGAATGCGAGTACAATATGCGAAAA CAA GATCTGACTGT CTTGCAACCGAAGATGGTTCTACTGCT CCAAAAGAGAAAAGAAAGAAGCAAGAGGAGAAAGCAGCGGAGAAAAAACGACGAGCTGAAGAGGCGCAACAATCTGGTCCTAATGCTGCTGCCCAAAGCAATGGGACTGGTTATCAAGCCTCACGCCTGGGCAAGAC TT CGCAA GAGCCACCT GCACCTCCAAACAATA T CCTTTTCA T CCAGAACTTACCAGCTGAGACTACAAGCATGATGCTCCAGATCCT GTTCCAGCAGTACCCTGGTTTCAGGGAAGTCCGGATGATCGAAGCCAAGCCAGGCATTGCTTTT GTGGAATACGAGGACGACAGCCAGTCTATGGTTGCAATGCAAGCTCTGCAGGGTTTCAAGATCA CCCCATACAACCCAATGGCTATATCCTACGCAAAGAAGTGAATGATCCATGGGATCCCACAATCTGGCAAGAAAACCTCTGTACTTGTAAGACTTTCCGCCCTTAGCTTTCAAACTGCTGTATCAGTTTTCTAACACTGTATTTTTGGAAAGCAATTGCTTAGTTTAGAAGTCTTTGTTGCTTAAATCATA ] [+] EMBL CF279491 [ CTGCTCGTCTCGTGGTGCTTCCTCCTCGTCTTCGGCGGCGGCGCGGCGGAGATGTTGTCCGGCGGCATACCCCCGAACCAGACGGTCTACCTCAGGAACCTCAACGAGAAGGTCAAGAAAGAAGAATTAAAGAGATCACTCTATGCGTTGTGCTCCCAATATGGGAGGATACTGGATGTGGTGGCCTTAAAAACACCTAAACTGAGGGGGCAGGCATGGGTGGTCTTCAGCGAAATTACCGCCGCCACAAATGCTTTCCGTGGACTGCAGGAATTCGATTTTTATGGCAAAAGAATGCGAGTACAATATGCGAAAA CAA GATCTGACTGT CTTGCAACCGAAGATGGTTCTACTGCT CCAAAAGAGAAAAGAAAGAAGCAAGAGGAGAA AGCGGAGAAAAAACGACGAGCTGAAGAGGCGCAACAATCTGGTCCTAATGCTGCTGCCCAAAGCAATGGGACTGGTTATCAAGCCTCACGCCTGGGCAAGAC TT CGCAA GAGCCACCT GCACCTCCAAACAATA T CCTTTTCA T CCAGAACTTACCAGCTGAGACTACAAGCATGATGCTCCAGATCCT GTTCCAGCA ] [+] EMBL C74030 [ GTCTCGTCTCCCTTCCTCCTCGTCTTCGGCGGCGGCGCGGCGGAGATGTTGTCCGGCGACATACCCCCGAACCAGACGGTCTACCTCAGGAACCTCAACGAGAAGGTCAAGAAAGAAGAATTAAAGAGATCACTCTATGCGTTGTGCTCCCAATATGGGAGGATACTGGATGTGGTGGCCTTAAAAACACCTAAACTGAGGGGGCAGGCATGGGTGGTCTTCAGCGAAATTACCGCCGCCACAAATGCTTTCCGTGGACTGCAGGAATTCGATTTTTATGGCAAAAGAATGCGAGTACAATATGCG AAA CAA GATCTGACTGTCCTTGCAACCGAAGATGGTTCTACTGCTCCCAAAAGAGAAAAGAAAG AGCCAGANGAGAAAGCACCGGGGAAAAACCGACGAGCTGAAGAGG ] [+] EMBL CB682395 [ CCTCCTCGTCTTCGGCGGCGGCGCGGCGGAGATGTTGTCCGGCGACATACCCCCGAACCAGACGGTCTACCTCAGGAACCTCAACGAGAAGGTCAAGAAAGAAGAATTAAAGAGATCACTCTATGCGTTGTGCTCCCAATATGGGAGGATACTGGATGTGGTGGCCTTAAAAACACCTAAACTGAGGGGGCAGGCATGGGTGGTCTTCAGCGAAATTACCGCCGCCACAAATGCTTTCCGTGGACTGCAGGAATTCGATTTTTATGGCAAAAGAATGCGAGTACAATATGCGAAAA CAA GATCTGACTGT CTTGCAACCGAAGATGGTTCTACTGCT CCAAAAGAGAAAAGAAAGAAGCAAGAGGAGAAAGCAGCGGAGAAAAAACGACGAGCTGAAGAGGCGCAACAATCTGGTCCTAATGCTGCTGCCCAAAGCAATGGGACTGGTTATCAAGCCTCACGCCTGGGCAAGAC TT CGCAA GAGCCACCT GCACCTCCAAACAATA T CCTTTTCA T CCAGAACTTACCAGCTGAGACTACAAGCATGATGCTCCAGATCCT GTTCCAGCAGTACCCTGGTTTCAGGGAAGTCCGGATGATCGAAGCCAAGCCAGGCATTGCTTTT GTGGAATACGAGGACGACAGCCAGTCTATGGTTGCAATGCAAGCTCTGCAGGGTTTCAAGATCA CCCCATACAACCCAATGGCTATATCCTACGCAAAGAAGTGAATGATCCATGGGATCCCACAATCTGGCAAGAAGACCTCTGTACTTGTAAGACTTTCCGCCCTTAGCTTTCAAACTGCTGTATCAGTTTTCTAACACTGTATTTTTGG ] [+] EMBL AU057632 [ CTCGTCTTCGGCGGCGGCGCGGCGGAGATGTTGTCCGGCGACATACCCCCGAACCAGACGGTCTACCTCAGGAACCTCAACGAGAAGGTCAAGAAAGAAGAATTAAAGAGATCACTCTATGCGTTGTGCTCCCAATATGGGAGGATACTGGATGTGGTGGCCTTAAAAACACCTAAACTGAGGGGGCAGGCATGGGTGGTCTTCAGCGAAATTACCGCCGCCACAAATGCTTTCCGTGGACTGCAGGAATTCGATTTTTATGGCAAAAGAATGCGAGTACAATATGCGAAAA CAA GATCTGACTGT CTTGCAACCGAAGATGGTTCTACTGCT CCAAAAGAGAAAAGAAAGAAGCAAGAGGAGAAAGCAGCGGAGAAAAAACGACGAGCTGAAGAGGCGCAACAAT ] [+] EMBL CB670209 [ GGCGGCGCGGCGGAGATGTTGTCCGGCGACATACCCCCGAACCAGACGGTCTACCTCAGGAACCTCAACGAGAAGGTCAAGAAAGAAGAATTAAAGAGATCACTCTATGCGTTGTGCTCCCAATATGGGAGGATACTGGATGTGGTGGCCTTAAAAACACCTAAACTGAGGGGGCAGGCATGGGTGGTCTTCAGCGAAATTACCGCCGCCACAAATGCTTTCCGTGGACTGCAGGAATTCGATTTTTATGGCAAAAGAATGCGAGTACAATATGCGAAAA CAA GATCTGACTGT CTTGCAACCGAAGATGGTTCTACTGCT CCAAAAGAGAAAAGAAAGAAGCAAGAGGAGAAAGCAGTGGAGAAAAAACGACGAGCTGAAGAGGCGCAACAATCTGGTCCTAATGCTGCTGCCCAAAGCAATGGGACTGGTTATCAAGCCTCACGCCTGGGCAAGAC TT CGCAA GAGCCACCT GCACCTCCAAACAATA T CCTTTTCA T CCAGAACTTACCAGCTGAGACTACAAGCATGATGCTCCAGATCCT GTTCCAGCAGTACCCTGGTTTCAGGGAAGTCCGGATGATCGAAGCCAAGCCAGGCATTGCTTTT GTGGAATACGAGGACGACAGCCAGTCTATGGTTGCAATGCAAGCTCTGCAGGGTTTCAAGATCA CCCCATACAACCCAATGGCTATATCCTACGCAAAGAAGTGAATGATCCATGGGATCCCACAATCTGGCAAGAAAACCTCTGTACTTGTAAGACTTTCCGCCCTTAGCTTTCAAACTGCTGTATCAGTTTTCTAACACTGTATTTTTG ] [+] EMBL D42868 [ TAAACTGAGGGGGCAGGCATGGGTGGTCTTCAGCGAAATTACCGCCGCCACAAATGCTTTCCGTGGACTGCAGGAATTCGATTTTTATGGCAAAAGAATGCGAGTACAATATGCGAAAA CAA GATCTGACTGT CTTGCAACCGAAGATGGTTCTACTGCT CCAAAAGAGAAAAGAAAGAAGCAAGAGGAGAAAGCAGCGGAGAAAAAACGACGAGCTGAAGAGGCGCAACAATCTGGTCCTAATGCTGCTGCCCAAAGCAATNGGGCTGGTTATCANGCCTCACGCCTGGGCAAGGCTTT CGCAAGGNGCCACCTTGGAACTTCCAAACAATATT CCTTTTTAGT CCNGGNCTTt ] [+] EMBL OS389U2B [ TAAACTGAGGGGGCAGGCATGGGTGGTCTTCAGCGAAATTACCGCCGCCACAAATGCTTTCCGTGGACTGCAGGAATTCGATTTTTATGGCAAAAGAATGCGAGTACAATATGCGAAAA CAA GATCTGACTGT CTTGCAACCGAAGATGGTTCTACTGCT CCAAAAGAGAAAAGAAAGAAGCAAGAGGAGAAAGCAGCGGAGAAAAAACGACGAGCTGAAGAGGCGCAACAATCTGGTCCTAATGCTGCTGCCCAAAGCAATNGGGCTGGTTATCANGCCTCACGCCTGGGCAAGGCTTT CGCAAGGNGCCACCTTGGAACTTCCAAACAATATT CCTTTTTAGT CCNGGNCTTttcn ] [-] EMBL CF279492 [ TTCGATTTTTATGGCAAAAGAATGCGAGTACAATATGCGAAAA CAA GATCTGACTGT CTTGCAACCGAAGATGGTTCTACTGCT CCAAAAGAGAAAAGAAAGAAGCAAGAGGAGAA AGCGGAGAAAAAACGACGAGCTGAAGAGGCGCAACAATCTGGTCCTAATGCTGCTGCCCAAAGCAATGGGACTGGTTATCAAGCCTCACGCCTGGGCAAGAC TT CGCAA GAGCCACCT GCACCTCCAAACAATA T CCTTTTCA T CCAGAACTTACCAGCTGAGACTACAAGCATGATGCTCCAGATCCT GTTCCAGCAGTACCCTGGTTTCAGGGAAGTCCGGATGATCGAAGCCAAGCCAGGCATTGCTTTT GTGGAATACGAGGACGACAGCCAGTCTATGGTTGCAATGCAAGCTCT CAGGATTTCAAGATCA CCCCATACAACCCAATGGCTATATCCTAAAAAAAAAAGTGAATGATCCATGGGATCCCACAATCTGGCAAGAAAACCTCTGTACTTGTAAGACTTTCCGCCCTTAGCTTTCAAACTGCTGTATCAGTTTTCTAACACTGTATTTTTGGAAAGCAATTGCTTAAAATAGAAGTCTTTGTTGCTTAAAA ] [+] EMBL AU031732 [ tccgGCGAAAACCAAGGTTCTGACTGT CTTGCAACCGANGATGNTTCTACTGCT CCAAAAGAGCAAAGANAGAAGCAAGAGGAGAAAGCAGCGGAGAAAAAACGACGAGCTGAAGAGGCGCAACAATCTGGTCCTAATGCTGCTGCCCAAAGCAATGGGACTGGTTATCAANCCTCACGCCTGGGCAAGAC TT CGCAA GAGCCACCT GCACCTCCAAACAATA T CCTTTTCA TCCCAGAACTTACCAGCTGAGACTACAAGCATGATGCTCCAGATCCT GTTCCAGCAGTACCCTGGTTTCAGGGAAGTCCGGATGATCGAAGCCAAGCCAGGCATTGCTTTT GTGGAATACGAGGACGACAGCCAGTCTATGGTTGCAATGCAAGCTCTGCAGGGTTTCAAGATCA CCCCATACAACCCAATGGCTATATCCTACGCAAAGAAGTGAATGATCCATGGGATCCCACAATCTGGCAAGAAAACCTCTGTACTTGTAAGACTTTCCGCCCTTAGCTTTCAAACTGCTGTATCAGTTTTCTAACACTGTATTTTTGGAAAGCAATTGCTTAGTTTAGAAGTC TTGCTGCTAAAAAAAca ] [+] EMBL OSR11581A [ A GATCTGACTGT CTTGCAACCGAAGATGGTTCTACTGCT CCAAAAGAGAAAAGAAAGAAGCAAGAGGAGAAAGCAGCGGAGAAAAAACGACGAGCTGAAGAGGCGCAACAATCTGGTCCTAATGCTGCTGCCCAAAGCAATGGGACTGGTTATCAAGCCTCACGCCTGGGCAAGAC TT CGCAA GAGCCACCT GCACCTCCAAACAATA T CCTTTTCA T CCAGAACTTACCAGCTGAGACTACAAGCATGATGCTCCAGATCCT GTTCCAGCAGTACCCTGGTTTCAGGGAAGTCCGGATGATCGAAGCCAAGCCAGGCATTGCTTTT GTGGAATACGAGGACGACAGCCAGTCTA ] [+] EMBL OSC2827A [ TGT CTTGCAACCGAAGATGGTTCTACTGCT CCAAAAGAGAAAAGAAAGAAGCAAGAGGAGAAAGCAGCGGAGAAAAAACGACGAGCTGAAGAGGCGCAACAATCTGGTCCTAATGCTGCTGCCCAAAGCAATGGGACTGGTTATCAAGCCTCACGCCTGGGCAAGAC TT CGCAA GAGCCACCT GCACCTTCAAACAATA TCCCTTTTCA T CCAGAACTTACCAGCTGAGACTACAAGGATGATGCTCCAGATCCTGGTTCCAGCAGTACCCTGGTTTNAGGGAAGNTCGGATGATCGAGGCCAAGGCAGGGATTTCTTTTNGTNGGATACGGGGAC ] [-] EMBL CF279322 [ AAAAGAAAGAAGCAAGAGGAGAAAGCAGCGGAGAAAAAACGACGAGCTGAAGAGGCGCAACAATCTGGTCCTAATGCTGCTGCCCAAAGCAATGGGACTGGTTATCAAGCCTCACGCCTGGGCAAGAC TT CGCAA GAGCCACCT GCACCTCCAAACAATANT CCTTTTCA T CCAGAACTTACCAGCTGAGACTACAAGCATGATGCTCCAGATCCT GTTCCAGCAGTACCCTGGTTTCAGGGAAGTCCGGATGATCGAAGCCAAGCCAGGCATTGCTTTT GTGGAATACGAGGACGACAGCCAGTCTATGGTTGCAATGCAAGCTCTGCAGGGTTTCAAGATCACCCCCATACAACCCAATGGCTATATCCTACGCAAAGAAGTGAATGATCCATGGGATCCCACAATCTGGCAAGAAAACCTCTGTACTTGTAAGACTTTCCGCCCTTAGCTTTCAAACTGCTGTATCAGTTTTCTAACACTGTATTTTTGGAAAGCAATTGCTTAGTTTAGAAGTCTTTGTTGCTTAAAAAA ] [-] EMBL CF293901 [ AAGAAAGAAGCAAGAGGAGAAAGCAGCGGAGAAAAAACGACGAGCTGAAGAGGCGCAACAATCTGGTCCTAATGCTGCTGCCCAAAGCAATGGGACTGGTTATCAAGCCTCACGCCTGGGCAAGAC TT CGCAA GAGCCACCT GCACCTCCAAACAATA T CCTTTTCA T CCAGAACTTACCAGCTGAGACTACAAGCATGATGCTCCAGATCCT GTTCCAGCAGTACCCTGGTTTCAGGGAAGTCCGGATGATCGAAGCCAAGCCAGGCATTGCTTTT GTGGAATACGAGGACGACAGCCAGTCTATGGTTGCAATGCAAGCTCTGCAGGGTTTCAAGATCA CCCCATACAACCCAATGGCTATATCCTACGCAAAGAAGTGAATGATCCATGGGATCCCACAATCTGGCAAGAAAACCTCTGTACTTGTAAGACTTTCCGCCCTTAGCTTTCAAACTGCTGTATCAGTTTTCTAACACTGTATTTTTGGAAAGCAATTGCTTAGTTTAGAAGTCTTTGTTGCTTAAAAAA ] [+] EMBL AU029267 [ AAGAGGAGAAAGCAGCGGAGAAAAAACGACGAGCTGAAGAGGCGCAACAATCTGGTCCTAATGCTGCTNCCCAAAGCANTGGGACTGGTTATCAAGCNTCACNCCTGGGCAAGAC TTCCGCAA GAGCCACCT GCACCTCCAAACAATA T CCTTTTCA T CCAGAACTTACCAGCTGAGACTACAAGCATGATGCTCCAGATCCT GTTCCAGCAGTACCCTGGTTTCAGGGAAGTCCGGATGATCGAAGCCAAGCCAGGCATTGCTTTT GTGGAATACGAGGACGACAGCCAGTCTATGGTTGCAATGCAAGCTCTGCAGGGTTTCAAGATCA CCCCATACAACCCAATGGCTATATCCTACGCAAAGAAGTGAATGATCCATGGGATCCCACAATNTGGCAAGAAAACCTCTGTACTTGTAAGACTTTCCGCCCTTAGCTTTCAAACTGCTGTATCAGTTTTCTAACACTGTATTTTTGGAAAGCAATTGCTTAGTTTAGAAGTCTTTGTTGCTTAAAAAA ] [-] EMBL CB682396 [ GCCCAAAGCAATGGGACTGGTTATCAAGCCTCACGCCTGGGCAAGAC TT CGCAA GAGCCACCT GCACCTCCAAACAATA T CCTTTTCA T CCAGAACTTACCAGCTGAGACTACAAGCATGATGCTCCAGATCCT GTTCCAGCAGTACCCTGGTTTCAGGGAAGTCCGGATGATCGAAGCCAAGCCAGGCATTGCTTTT GTGGAATACGAGGACGACAGCCAGTCTATGGTTGCAATGCAAGCTCTGCAGGGTTTCAAGATCA CCCCATACAACCCAATGGCTATATCCTACGCAAAGAAGTGAATGATCCATGGGATCCCACAATCTGGCAAGAAAACCTCTGTACTTGTAAGACTTTCCGCCCTTAGCTTTCAAACTGCTGTATCAGTTTTCTAACACTGTATTTTTGGAAAGCAATTGCTTAGTTTAGAAGTCTTTGTTGCTTAAATCATATTTGGTCTTCATTCTTTTTGTTAACCCTGCTTTTGATGCTGGCATGTCTGGTATTGTGGCCTTTGTAGGCTACATTATCTTTTCTCCTACACTGGTGGTAGAAGTTAGAAGATGTATCCCTCCCTTAAAAGCCAAGAGAAAATCATGCCCCTATATTCCCCTCGTCCATTTTCCTTGGTCAGAGATGAATGAGGTGTATATGCCATATTATATTGCCAAAAATCATAAGTGTCACCTCAGTAGTTGCAGGCATGATGATTGTTGAACACGTATTTTAGTGGTGGGATGGTAGGTTTCGTGGCCTTGTGATTTTATACAATAAAGTGTGCGG ] [-] EMBL CB670210 [ AATGGGACTGGTTATCAAGCCTCACGCCTGGGCAAGAC TT CGCAA GAGCCACCT GCACCTCCAAACAATA T CCTTTTCA T CCAGAACTTACCAGCTGAGACTACAAGCATGATGCTCCAGATCCT GTTCCAGCAGTACCCTGGTTTCAGGGAAGTCCGGATGATCGAAGCCAAGCCAGGCATTGCTTTT GTGGAATACGAGGACGACAGCCAGTCTATGGTTGCAATGCAAGCTCTGCAGGGTTTCAAGATCA CCCCATACAACCCAATGGCTATATCCTACGCAAAGAAGTGAATGATCCATGGGATCCCACAATCTGGCAAGAAAACCTCTGTACTTGTAAGACTTTCCGCCCTTAGCTTTCAAACTGCTGTATCAGTTTTCTAACACTGTATTTTTGGAAAGCAATTGCTTAGTTTAGAAGTCTTTGTTGCTTAAATCATATTTGGTCTTCATTCTTTTTGTTAACCCTGCTTTTGATGCTGGCATGTCTGGTATTGTGGCCTTTGTAGGCTACATTATCTTTTCTCCTACACTGGTGGTAGAAGTTAGAAGATGTATCCCTCCCTTAAAAGCCAAGAGAAAATCATGCCCCTATATTCCCCTCGTCCATTTTCCTTGGTCAGAGATGAATGAGGTGTATATGCCATATTATATTGCCAAAAATCATAAGTGTCACCTCAGTAGTTGCAGGCATGATGATTGTTGAACACGTATTTTAGTGGTGGGATGGTAGGTTTCGTGGCCTTGGGATTTTATACAATAAAGTGTGCGGCCTTCTACT] [-] EMBL CF294951 [ AACTTACCAGCTGAGACTACAAGCATGATGCTCCAGATCCT GTCCCAGCAGTACCCTGGTTTCAGGGAAGTCCGGATGATCGAAGCCAAGCCAGGCATTGCTTTT GTGGAATACGAGGACGACAGCCAGTCTATGGTTGCAATGCAAGCTCTGCAGGGTTTCAAAATCA CCCCATACAACCCAATGAATATATCCTACGCAAAGAAGAAAATAATCCATGGGATCCCACAATCTGGCAAGAAAACCTCTGTACTTGTAAAACTTTCCGCCCTTAGCTTTCAAACTGCTGTATCAGTTTTCTAACACTGTATTTTTGGAAAGCAATTGCT ] consensusID : consensus_15677#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 694 fasta sequence [GTGGTCTTCCAGCGGAAATTTACCGCCGCCACAAATGCTTTCCGTGGACTGCCAGGAATTCGATTTTTTATGGCCAAAAGATGCGAGTACCATATGCGAAAACAAGATCTGACTGTCTTGCAACCGAAGATGGTTCTACTGCTCCAAAAGNGAAAAGAAAGAAGCAAGAGGAGAAAGCAGCGGAGAAAAAACGACGAGCTGAAGAGGCGCAACAATCTGGTCCTAATGCTGCTGCCCAAAGCAATGGGACTGGTTATCAAGCCTCACGCCTGGGCAAGACTTCGCAAGAGCCACCTGCACCTCCAAACAATATCCTTTTCATCCAGAACTTACCAGCTGAGACTACAAGCATGCTCCAGATCCTGTTCCAGCAGTACCCTGGTTTCAGGGAAGTCCGGATGATCGAAGCCAAGCCAGGCATTGCTTTTGTGGAATACGAGGACGACAGCCAGTCTATGGTTGCAATGCAAGCTCTGCAGGGTTTCAAGATCACCCCATACAACCCAATGGCTATATCCTACGCAAAGAAGTGAATGATCCATGGGATCCCACAATCTGGCAAGAAAACCTCTGTACTTGTAAGACTTTCCGCCCTTAGCTTTCAAACTGCTGTATCAGTTTTCTAACACTGTATTTTTGGAAAGCAATTGCTTAGTTTAGAAGTCTTTGTTGCTTAAAAAAAAAAAAAAAAAAA] [+] EMBL AU057633 [GTGGTCTTCCAGCGGAAATTTACCGCCGCCACAAATGCTTTCCGTGGACTGCCAGGAATTCGATTTTTTATGGCCAAAAGATGCGAGTACCATATGCGAAAACAAGATCTGACTGTCTTGCAACCGAAGATGGTTCTACTGCTCCAAAAGNGAAAAGAAAGAAGCAAGAGGAGAAAGCAGCGGAGAAAAAACGACGAGCTGAAGAGGCGCAACAATCTGGTCCTAATGCTGCTGCCCAAAGCAATGGGACTGGTTATCAAGCCTCACGCCTGGGCAAGACTTCGCAAGAGCCACCTGCACCTCCAAACAATATCCTTTTCATCCAGAACTTACCAGCTGAGACTACAAGCATGCTCCAGATCCTGTTCCAGCAGTACCCTGGTTTCAGGGAAGTCCGGATGATCGAAGCCAAGCCAGGCATTGCTTTTGTGGAATACGAGGACGACAGCCAGTCTATGGTTGCAATGCAAGCTCTGCAGGGTTTCAAGATCACCCCATACAACCCAATGGCTATATCCTACGCAAAGAAGTGAATGATCCATGGGATCCCACAATCTGGCAAGAAAACCTCTGTACTTGTAAGACTTTCCGCCCTTAGCTTTCAAACTGCTGTATCAGTTTTCTAACACTGTATTTTTGGAAAGCAATTGCTTAGTTTAGAAGTCTTTGTTGCTTAAAAAAAAAAAAAAAAAAA] consensusID : consensus_15677#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 688 fasta sequence [CCGACGGCGGTCCACAACGATCGGCGATCCCCCAATACCGATCCCTACGCCGTCCGAACCCGATGCGCGGCCCATCCCAACGCCACAACCAGTCGTTTCGCAATCGCCAACCGCTAGCCGCATGCCCAACCCAAAATTACCCAGCCACCCGGATACCCCGGGCGCCAAAACTACCCGGCTGAAGACGCGAACCCATCGGGCGCCAACGACATGGCCCAAAACAATCGGCCTGGTTATAAACCCTCACGCCTGGGCAATCGTTAACAAGAGCCGCCCTGCACCTCCAAACAATATCCTTTTCATCCAGAACTTACCAGCTGAGACTACAAGCATGATGCTCCAGATCCTGTTCCAGCAGTACCCTGGTTTCAGGGAAGTCCGGATGATCGAAGCCAAGCC-AGGCATTGCT-TTT-GTGGAATACGAGGACGACA-GCCAGTCTAT-GGTTGCAATGCAAGCTCTGCAGGGTTTCAAGATCACC-CCATACAACCCAATGGCTATATCCTACGCAAAGAAGTGAATGATCCATGGGATCCCACAATCTGGCAAGAAAACCTCTGTACCTGTAAGACTTTCCGCCCTTAGCTTTCAAACTGCTGTATCAGTTTTCTAACACTGTATTTTTGGAAAGCAATTGCTTAGTTTAGAAGTCTTTGTTGCTTAAATCATATTTGGTCTTCAAAAAAAAAAA] [-] EMBL CA763236 [CCGACGGCGGTCCACAACGATCGGCGATCCCCCAATACCGATCCCTACGCCGTCCGAACCCGATGCGCGGCCCATCCCAACGCCACAACCAGTCGTTTCGCAATCGCCAACCGCTAGCCGCATGCCCAACCCAAAATTACCCAGCCACCCGGATACCCCGGGCGCCAAAACTACCCGGCTGAAGACGCGAACCCATCGGGCGCCAACGACATGGCCCAAAACAATCGGCCTGGTTATAAACCCTCACGCCTGGGCAATCGTTAACAAGAGCCGCCCTGCACCTCCAAACAATATCCTTTTCATCCAGAACTTACCAGCTGAGACTACAAGCATGATGCTCCAGATCCTGTTCCAGCAGTACCCTGGTTTCAGGGAAGTCCGGATGATCGAAGCCAAGCC AGGCATTGCT TTT GTGGAATACGAGGACGACA GCCAGTCTAT GGTTGCAATGCAAGCTCTGCAGGGTTTCAAGATCACC CCATACAACCCAATGGCTATATCCTACGCAAAGAAGTGAATGATCCATGGGATCCCACAATCTGGCAAGAAAACCTCTGTACCTGTAAGACTTTCCGCCCTTAGCTTTCAAACTGCTGTATCAGTTTTCTAACACTGTATTTTTGGAAAGCAATTGCTTAGTTTAGAAGTCTTTGTTGCTTAAATCATATTTGGTCTTCAAAAAAAAAAA] [+] EMBL BI805970 [ GTCCGGATGATCGAAACCAAGCCTAGGTATTGCTNTTTCGTGGAATACGAGGACGACATGCCAGTCTATAGGTTGCAATGCAAGCTCTGCAGGGTTTCAAGATCACCTCCATACAACCCTATGGCTATATCCTACGCAAAGAAGTGAATGATCCATGGGATCCCAC ATCTGGCAAGAAAACCTCTGTACCTGTAAGACTTTCCGCC ] consensusID : consensus_15677#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 149 fasta sequence [AGTACCCTGGTTTCGGAGTCCGGATGATCGAAGCCAAGCCAGGCATTGCTTTTGTGGAATACGAGGACGACAGCCAGTCTATNTTGCNNTGCAGCTCTCAGGGTTTCAAGATCACCCCATACAACCCAATGGCTATATCTACGAAGAGG] [+] EMBL AA749691 [AGTACCCTGGTTTCGGAGTCCGGATGATCGAAGCCAAGCCAGGCATTGCTTTTGTGGAATACGAGGACGACAGCCAGTCTATNTTGCNNTGCAGCTCTCAGGGTTTCAAGATCACCCCATACAACCCAATGGCTATATCTACGAAGAGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15677#2 ------------------------------------------------------------ consensus_15677#3 ------------------------------------------------------------ consensus_15677#0 CACCGCGGCCACAATATCGCGGGCCTCTCTCCTGCTCGTCTCGTCTCCCTTCCTCCTCGT 60 consensus_15677#1 ------------------------------------------------------------ consensus_15677#2 ------------------------------------------------------------ consensus_15677#3 ------------------------------------------------------------ consensus_15677#0 CTTCGGCGGCGGCGCGGCGGAGATGTTGTCCGGCGACATACCCCCGAACCAGACGGTCTA 120 consensus_15677#1 ------------------------------------------------------------ consensus_15677#2 ------------------------------------------------------------ consensus_15677#3 ------------------------------------------------------------ consensus_15677#0 CCTCAGGAACCTCAACGAGAAGGTCAAGAAAGAAGAATTAAAGAGATCACTCTATGCGTT 180 consensus_15677#1 ------------------------------------------------------------ consensus_15677#2 ------------------------------------------------------------ consensus_15677#3 ------------------------------------------------------------ consensus_15677#0 GTGCTCCCAATATGGGAGGATACTGGATGTGGTGGCCTTAAAAACACCTAAACTGAGGGG 240 consensus_15677#1 ------------------------------------------------------------ consensus_15677#2 -----------------------------CCGACGGCGGTCCACA-ACGATCGGCGATCC 30 consensus_15677#3 ------------------------------------------------------------ consensus_15677#0 GCAGGCATGGGTGGTCTTC-AGCGAAA--TTACCGCCGCCACAAATGCTTTCCGTGGACT 297 consensus_15677#1 ----------GTGGTCTTCCAGCGGAAATTTACCGCCGCCACAAATGCTTTCCGTGGACT 50 consensus_15677#2 CCCAATACCGATCCCTACGCCGTCCGAACCCGATGCGCGGCCCATCCCAACGCCACAACC 90 consensus_15677#3 ------------------------------------------------------------ consensus_15677#0 GC-AGGAATTCGATTTTT-ATGGCAAAAGAATGCGAGTACAATATGCGAAAACAAGATCT 355 consensus_15677#1 GCCAGGAATTCGATTTTTTATGGCCAAAAGATGCGAGTACCATATGCGAAAACAAGATCT 110 consensus_15677#2 AGTCGTTTCGCAATCGCCAACCGCTAGCCGCATGCCCAACCCAAAATTACCCAGCCACCC 150 consensus_15677#3 ------------------------------------------------------------ consensus_15677#0 GACTGTCTTGCAACCGAAGATGGTTCTACTGCTCCAAAAGAGAAAAGAAAGAAGCAAGAG 415 consensus_15677#1 GACTGTCTTGCAACCGAAGATGGTTCTACTGCTCCAAAAGNGAAAAGAAAGAAGCAAGAG 170 consensus_15677#2 GGATACCCCGGGCGCCAAAACTACCCGGCTGAAGACGCGAACCCATCGGGCGCCAACGAC 210 consensus_15677#3 ------------------------------------------------------------ consensus_15677#0 GAGAAAGCAGCGGAGAAAAAACGACGAGCTGAAGAGGCGCAACAATCTGGTCCTAATGCT 475 consensus_15677#1 GAGAAAGCAGCGGAGAAAAAACGACGAGCTGAAGAGGCGCAACAATCTGGTCCTAATGCT 230 consensus_15677#2 ATGGCCCAAAACAATCGGCCTGGTTATAAACCCTCACGCCTGGGCAATCGTTAACAAGAG 270 consensus_15677#3 ------------------------------------------------------------ consensus_15677#0 GCTGCCCAAAGCAATGGGACTGGTTATCAAGCCTCACGCCTGGGCAAGACTTCGCAAGAG 535 consensus_15677#1 GCTGCCCAAAGCAATGGGACTGGTTATCAAGCCTCACGCCTGGGCAAGACTTCGCAAGAG 290 consensus_15677#2 CCGCCCTGCACCTCCAAACAATATCCTTTTCATCCAGAACTTACCAGCTGAGACTACAAG 330 consensus_15677#3 ------------------------------------------------------------ consensus_15677#0 CCACC-TGCACCTCCAAACAATATCCTTTTCATCCAGAACTTACCAGCTGAGACTACAAG 594 consensus_15677#1 CCACC-TGCACCTCCAAACAATATCCTTTTCATCCAGAACTTACCAGCTGAGACTACAAG 349 consensus_15677#2 CATGATGCTCCAGATCCTGTTCCAGCAGTACCCTGGTTTCAGGGAAGTCCGGATGATCGA 390 consensus_15677#3 --------------------------AGTACCCTGGTTTCGG---AGTCCGGATGATCGA 31 consensus_15677#0 CATGATGCTCCAGATCCTGTTCCAGCAGTACCCTGGTTTCAGGGAAGTCCGGATGATCGA 654 consensus_15677#1 CAT---GCTCCAGATCCTGTTCCAGCAGTACCCTGGTTTCAGGGAAGTCCGGATGATCGA 406 ************** * *************** consensus_15677#2 AGCCAAGCCAGGCATTGCTTTTGTGGAATACGAGGACGACAGCCAGTCTATGGTTGCAAT 450 consensus_15677#3 AGCCAAGCCAGGCATTGCTTTTGTGGAATACGAGGACGACAGCCAGTCTATN-TTGCNNT 90 consensus_15677#0 AGCCAAGCCAGGCATTGCTTTTGTGGAATACGAGGACGACAGCCAGTCTATGGTTGCAAT 714 consensus_15677#1 AGCCAAGCCAGGCATTGCTTTTGTGGAATACGAGGACGACAGCCAGTCTATGGTTGCAAT 466 *************************************************** **** * consensus_15677#2 GCAAGCTCTGCAGGGTTTCAAGATCACCCCATACAACCCAATGGCTATATCCTACGCAAA 510 consensus_15677#3 GCA-GCTCT-CAGGGTTTCAAGATCACCCCATACAACCCAATGGCTATATC-TACGAAGA 147 consensus_15677#0 GCAAGCTCTGCAGGGTTTCAAGATCACCCCATACAACCCAATGGCTATATCCTACGCAAA 774 consensus_15677#1 GCAAGCTCTGCAGGGTTTCAAGATCACCCCATACAACCCAATGGCTATATCCTACGCAAA 526 *** ***** ***************************************** **** * * consensus_15677#2 GAAGTGAATGATCCATGGGATCCCACAATCTGGCAAGAAAACCTCTGTACCTGTAAGACT 570 consensus_15677#3 GG---------------------------------------------------------- 149 consensus_15677#0 GAAGTGAATGATCCATGGGATCCCACAATCTGGCAAGAAAACCTCTGTACTTGTAAGACT 834 consensus_15677#1 GAAGTGAATGATCCATGGGATCCCACAATCTGGCAAGAAAACCTCTGTACTTGTAAGACT 586 * consensus_15677#2 TTCCGCCCTTAGCTTTCAAACTGCTGTATCAGTTTTCTAACACTGTATTTTTGGAAAGCA 630 consensus_15677#3 ------------------------------------------------------------ consensus_15677#0 TTCCGCCCTTAGCTTTCAAACTGCTGTATCAGTTTTCTAACACTGTATTTTTGGAAAGCA 894 consensus_15677#1 TTCCGCCCTTAGCTTTCAAACTGCTGTATCAGTTTTCTAACACTGTATTTTTGGAAAGCA 646 consensus_15677#2 ATTGCTTAGTTTAGAAGTCTTTGTTGCTTAAATCATATTTGGTCTTCAAAAAAAAAAA-- 688 consensus_15677#3 ------------------------------------------------------------ consensus_15677#0 ATTGCTTAGTTTAGAAGTCTTTGTTGCTTAAAAAATATTTGGTCTTCATTCTTTTTGTTA 954 consensus_15677#1 ATTGCTTAGTTTAGAAGTCTTTGTTGCTTAAAAAAAAAAAAAAAAAAA------------ 694 consensus_15677#2 ------------------------------------------------------------ consensus_15677#3 ------------------------------------------------------------ consensus_15677#0 ACCCTGCTTTTGATGCTGGCATGTCTGGTATTGTGGCCTTTGTAGGCTACATTATCTTTT 1014 consensus_15677#1 ------------------------------------------------------------ consensus_15677#2 ------------------------------------------------------------ consensus_15677#3 ------------------------------------------------------------ consensus_15677#0 CTCCTACACTGGTGGTAGAAGTTAGAAGATGTATCCCTCCCTTAAAAGCCAAGAGAAAAT 1074 consensus_15677#1 ------------------------------------------------------------ consensus_15677#2 ------------------------------------------------------------ consensus_15677#3 ------------------------------------------------------------ consensus_15677#0 CATGCCCCTATATTCCCCTCGTCCATTTTCCTTGGTCAGAGATGAATGAGGTGTATATGC 1134 consensus_15677#1 ------------------------------------------------------------ consensus_15677#2 ------------------------------------------------------------ consensus_15677#3 ------------------------------------------------------------ consensus_15677#0 CATATTATATTGCCAAAAATCATAAGTGTCACCTCAGTAGTTGCAGGCATGATGATTGTT 1194 consensus_15677#1 ------------------------------------------------------------ consensus_15677#2 ------------------------------------------------------------ consensus_15677#3 ------------------------------------------------------------ consensus_15677#0 GAACACGTATTTTAGTGGTGGGATGGTAGGTTTCGTGGCCTTGTGATTTTATACAATAAA 1254 consensus_15677#1 ------------------------------------------------------------ consensus_15677#2 ----------------- consensus_15677#3 ----------------- consensus_15677#0 GTGTGCGGCCTTCTACT 1271 consensus_15677#1 ----------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||