These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15758#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 16 consensus length = 1122 fasta sequence [TGAAGGAGTAGAAAGCCCACACACCCAAACCCAACCTCCCAAAACACCCACCCGGTTTACCAGAGATCCGCGCCCGCCACTTGTAAACCTGCTGCACCCATGGCGCCCAGAGCAGCTACGGTGGAGAAGGTTGCTGTGGCGCCACCCACCGGGCTTGGTCTTGGCGTCGGCGGAGGTGTCGGAGCCGGGGGTCCTCACTACAGGGGCGTCCGCAAGCGCCCGTGGGGGCGTTACGCAGCGGAGATCCGTGACCCTGCCAAGAAGAGCCGGGTGTGGCTCGGTACCTACGACACGGCAGAGGAGGCCGCCCGCGCCTACGACGCCGCCGCTCGAGAGTTCCGGGGTGCCAAGGCAAAAACAAACTTTCCGTTTGCATCACAGTCGATGGTCGGCTGTGGCGGCAGCCCCAGCAGCAATAGCACGGTAGACACCGGTGGCGGCGGGGTTCAGACGCCTATGCGGGCCATGCCTCTGCCGCCGACTCTGGACTTGGATTTGTTCCACCGCGCGGCTGCTGTGACTGCAGTCGCCGGCACCGGCGTTCGCTTT-CCTTTCAGAGGATATCCCGTTGCACGTCCAGCAACGCATCCTTACTTTTTCTATGAGCAGGCTGCAGCGGCTGCCGCAGCTGAGGCTGGATACCGTATGATGAAGCTTGCACCGCCGGTCACCGTGGCGGCGGTTGCACAAAGTGACTCCGACTCCTCGTCGGTGGTTGATCTCGCGCCGTCACCTCCAGCGGTTACGGCGAACAAGGCGGCAGCTTTCGATCTGGATCTGAACCGGCCGCCGCCGGTAGAGAACTAGCTCAGGATGGGTTAGCTGACGACTTTGTAGTTTCTCTCTTATTTTCTTCTTTGATGGATATTTCTCTCCGATGTTTTGGTCCTC--TGTGTTTTTGTTTAGTAGCCTGTGA-GAGACGGAAGAGCCTTGTAAATAG-TTTTTCTGCCGAGGGCGAAATTCATCTTGGGATCTGTTAATTAGAACAGATCATGCCGGCGATGAGATGGACTAAACCGTGGAGTGTATGTATTCCTTTATATTAGTATGAAGAAATTATTCAGAAAGTCACAAAAATATCTGTGCACACTGAGTTTGATTGACGTTTTTAAAAAAAAAAAA] [+] EMBL CF308831 [TGAAGGAGTAGAAAGCCCACACACCCAAACCCAACCTCCCAAAACACCCACCCGGTTTACCAGAGATCCGCGCCCGCCACTTGTAAACCTGCTGCACCCATGGCGCCCAGAGCAGCTACGGTGGAGAAGGTTGCTGTGGCGCCACCCACCGGGCCTGGTCTTGGCGTCGGCGGAGGTGTCGGAGCCGGGGGTCCTCACTACAGGGGCGTCCGCAAGCGCCCGTGGGGGCGTTACGCAGCGGAGATCCGTGA CCTGCCAAGAAGAGCCGGGTGTGGCTCGGTACCTACGACACGGCGGAGGAGGCCGCCCGCGCCTACGACGCCGCCGCTCGAGAGTTCCGGGGTGCCAAGGCAAAAACAAACTTTCCGTTTGCATCACAGTCGATGGTCGGCTGTGGCGGCAGCCCCAGCAGCAATAGCACGGTAGACACCGGTGGCGGCGGGGTTCAGACGCCTATGCGGGCCATGCCTCTGCCGCCGACTCTGGACTTGGATTTGTTCCACCGCGCGGCTGCTGTGACTGCAGTCGCCGGCACCGGCGTTCGCTTT CCTTTCAGAGGATATCCCGTTGCACGTGCAGCAACGCATCCTT ] [+] EMBL AK069262 [ CACACACCCAAACCCAACCTCCCAAAACACCCACCCGGTTTACCAGAGATCCGCGCCCGCCACTTGTAAACCTGCTGCACCCATGGCGCCCAGAGCAGCTACGGTGGAGAAGGTTGCTGTGGCGCCACCCACCGGGCTTGGTCTTGGCGTCGGCGGAGGTGTCGGAGCCGGGGGTCCTCACTACAGGGGCGTCCGCAAGCGCCCGTGGGGGCGTTACGCAGCGGAGATCCGTGACCCTGCCAAGAAGAGCCGGGTGTGGCTCGGTACCTACGACACGGCAGAGGAGGCCGCCCGCGCCTACGACGCCGCCGCTCGAGAGTTCCGGGGTGCCAAGGCAAAAACAAGCTTTCCGTTTGCATCACAGTCGATGGTCGGCTGTGGCGGCAGCCCCAGCAGCAATAGCACGGTAGACACCGGTGGCGGCGGGGTTCAGACGCCTATGCGGGCCATGCCTCTGCCGCCGACTCTGGACTTGGATTTGTTCCACCGCGCGGCTGCTGTGACTGCAGTCGCCGGCACCGGCGTTCGCTTT CCTTTCAGAGGATATCCCGTTGCACGTCCAGCAACGCATCCTTACTTTTTCTATGAGCAGGCTGCAGCGGCTGCCGCAGCTGAGGCTGGATACCGTATGATGAAGCTTGCACCGCCGGTCACCGTGGCGGCGGTTGCACAAAGTGACTCCGACTCCTCGTCGGTGGTTGATCTCGCGCCGTCACCTCCAGCGGTTACGGCGAACAAGGCGGCAGCTTTCGATCTGGATCTGAACCGGCCGCCGCCGGTAGAGAACTAGCTCAGGATGGGTTAGCTGACGACTTTGTAGTTTCTCTCTTATTTTCTTCTTTGATGGATATTTCTCTCCGATGTTTTGGTCCTC TGTGTTTTTGTTTAGTAGCCTGTGA GAGACGGAAGAGCCTTGTAAATAG TTTTTCTGCCGAGGGCGAAATTCATCTTGGGATCTGTTAATTAGAACAGATCATGCCGGCGATGAGATGGACTAAACCGTGGAGTGTATGTATTCCTTTATATTAGTATGAAGAAATTAT ] [+] EMBL CF311084 [ caCACACACCCAAACCCAACCTCCCAAAACACCCACCCGGTTTACCAGAGATCC ] [+] EMBL AK061380 [ CCCAAACCCAACCTCCCAAAACACCCACCCGGTTTACCAGAGATCCGCGCCCGCCACTTGTAAACCTGCTGCACCCATGGCGCCCAGAGCAGCTACGGTGGAGAAGGTTGCTGTGGCGCCACCCACCGGGCTTGGTCTTGGCGTCGGCGGAGGTGTCGGAGCCGGGGGTCCTCACTACAGGGGCGTCCGCAAGCGCCCGTGGGGGCGTTACGCAGCGGAGATCCGTGACCCTGCCAAGAAGAGCCGGGTGTGGCTCGGTACCTACGACACGGCAGAGGAGGCCGCCCGCGCCTACGACGCCGCCGCTCGAGAGTTCCGGGGTGCCAAGGCAAAAACAAACTTTCCGTTTGCATCACAGTCGATGGTCGGCTGTGGCGGCAGCCCCAGCAGCAATAGCACGGTAGACACCGGTGGCGGCGGGGTTCAGACGCCTATGCGGGCCATGCCTCTGCCGCCGACTCTGGACTTGGATTTGTTCCACCGCGCGGCTGCTGTGACTGCAGTCGCCGGCACCGGCGTTCGCTTT CCTTTCAGAGGATATCCCGTTGCACGTCCAGCAACGCATCCTTACTTTTTCTATGAGCAGGCTGCAGCGGCTGCCGCAGCTGAGGCTGGATACCGTATGATGAAGCTTGCACCGCCGGTCACCGTGGCGGCGGTTGCACAAAGTGACTCCGACTCCTCGTCGGTGGTTGATCTCGCGCCGTCACCTCCAGCGGTTACGGCGAACAAGGCGGCAGCTTTCGATCTGGATCTGAACCGGCCGCCGCCGGTAGAGAACTAGCTCAGGATGGGTTAGCTGACGACTTTGTAGTTTCTCTCTTATTTTCTTCTTTGATGGATATTTCTCTCCGATGTTTTGGTCCTC TGTGTTTTTGTTTAGTAGCCTGTGA GAGACGGAAGAGCCTTGTAAATAG TTTTTCTGCCGAGGGCGAAATTCATCTTGGGATCTGTTAATTAGAACAGATCATGCCGGCGATGAGATGGACTAAACCGTGGAGTGTATGTATTCCTTTATATTAGTATGAAGAAATTATTC ] [+] EMBL AB036883 [ ACCCAACCTCCCAAAACACCCACCCGGTTTACCAGAGATCCGCGCCCGCCACTTGTAAACCTGCTGCACCCATGGCGCCCAGAGCAGCTACGGTGGAGAAGGTTGCTGTGGCGCCACCCACCGGGCTTGGTCTTGGCGTCGGCGGAGGTGTCGGAGCCGGGGGTCCTCACTACAGGGGCGTCCGCAAGCGCCCGTGGGGGCGTTACGCAGCGGAGATCCGTGACCCTGCCAAGAAGAGCCGGGTGTGGCTCGGTACCTACGACACGGCAGAGGAGGCCGCCCGCGCCTACGACGCCGCCGCTCGAGAGTTCCGGGGTGCCAAGGCAAAAACAAACTTTCCGTTTGCATCACAGTCGATGGTCGGCTGTGGCGGCAGCCCCAGCAGCAATAGCACGGTAGACACCGGTGGCGGCGGGGTTCAGACGCCTATGCGGGCCATGCCTCTGCCGCCGACTCTGGACTTGGATTTGTTCCACCGCGCGGCTGCTGTGACTGCAGTCGCCGGCACCGGCGTTCGCTTT CCTTTCAGAGGATATCCCGTTGCACGTCCAGCAACGCATCCTTACTTTTTCTATGAGCAGGCTGCAGCGGCTGCCGCAGCTGAGGCTGGATACCGTATGATGAAGCTTGCACCGCCGGTCACCGTGGCGGCGGTTGCACAAAGTGACTCCGACTCCTCGTCGGTGGTTGATCTCGCGCCGTCACCTCCAGCGGTTACGGCGAACAAGGCGGCAGCTTTCGATCTGGATCTGAACCGGCCGCCGCCGGTAGAGAACTAGCTCAGGATGGGTTAGCTGACGACTTTGTAGTTTCTCTCTTATTTTCTTCTTTGATGGATATTTCTCTCCGATGTTTTGGTCCTC TGTGTTTTTGTTTAGTAGCCTGTGA GAGACGGAAGAGCCTTGTAAATAG TTTTTCTGCCGAGGGCGAAATTCATCTTGGGATCTGTTAATTAGAACAGATCATGCCGGCGATGAGATGGACTAAACCGTGGAGTGTATGTATTCCTTTATATTAGTATGAAGAAATTATTCAGAAAGTCACAAAAATATCTGTGCACACTGAGTTTGA ] [+] EMBL AB037183 [ ACCCAACCTCCCAAAACACCCACCCGGTTTACCAGAGATCCGCGCCCGCCACTTGTAAACCTGCTGCACCCATGGCGCCCAGAGCAGCTACGGTGGAGAAGGTTGCTGTGGCGCCACCCACCGGGCTTGGTCTTGGCGTCGGCGGAGGTGTCGGAGCCGGGGGTCCTCACTACAGGGGCGTCCGCAAGCGCCCGTGGGGGCGTTACGCAGCGGAGATCCGTGACCCTGCCAAGAAGAGCCGGGTGTGGCTCGGTACCTACGACACGGCAGAGGAGGCCGCCCGCGCCTACGACGCCGCCGCTCGAGAGTTCCGGGGTGCCAAGGCAAAAACAAACTTTCCGTTTGCATCACAGTCGATGGTCGGCTGTGGCGGCAGCCCCAGCAGCAATAGCACGGTAGACACCGGTGGCGGCGGGGTTCAGACGCCTATGCGGGCCATGCCTCTGCCGCCGACTCTGGACTTGGATTTGTTCCACCGCGCGGCTGCTGTGACTGCAGTCGCCGGCACCGGCGTTCGCTTT CCTTTCAGAGGATATCCCGTTGCACGTCCAGCAACGCATCCTTACTTTTTCTATGAGCAGGCTGCAGCGGCTGCCGCAGCTGAGGCTGGATACCGTATGATGAAGCTTGCACCGCCGGTCACCGTGGCGGCGGTTGCACAAAGTGACTCCGACTCCTCGTCGGTGGTTGATCTCGCGCCGTCACCTCCAGCGGTTACGGCGAACAAGGCGGCAGCTTTCGATCTGGATCTGAACCGGCCGCCGCCGGTAGAGAACTAGCTCAGGATGGGTTAGCTGACGACTTTGTAGTTTCTCTCTTATTTTCTTCTTTGATGGATATTTCTCTCCGATGTTTTGGTCCTC TGTGTTTTTGTTTAGTAGCCTGTGA GAGACGGAAGAGCCTTGTAAATAG TTTTTCTGCCGAGGGCGAAATTCATCTTGGGATCTGTTAATTAGAACAGATCATGCCGGCGATGAGATGGACTAAACCGTGGAGTGTATGTATTCCTTTATATTAGTATGAAGAAATTATTCAGAAAGTCACAAAAATATCTGTGCACACTGAGTTTGA ] [+] EMBL AU181580 [ CCACCCGGTTTACCAGAGATCCGCGCCCGCCACTTGTAAACCTGCTGCACCCATGGCGCCCAGAGCAGCTACGGTGGAGAAGGTTGCTGTGGCGCCACCCACCGGGCTTGGTCTTGGCGTCGGCGGAGGTGTCGGAGCCGGGGGTCCTCACTACAGGGGCGTCCGCAAGCGCCCGTGGGGGCGTTACGCAGCGGAGATCCGTGACCCTGCCAAGAAGAGCCGGGTGTGGCTCGGTACCTACGACACGGCAGAGGAGGCCGCCCGCGCCTACGACGCCGCCGCTCGAGAGTTCCGGGGTGCCAAGGCAAAAACAAACTTTCCGTTTGCATCACAGTCGATGGTCGGCTGTGGCGGCAGCCCCAGCAGCAATAGCACGGTAGACACCGGTGGCGGCGGGGTTCAGACGCCTATGCGGGC ] [+] EMBL AU222696 [ CCCGTGGGGGCGTTACGCAGCGGAGATCCGTGACCCTGCCAAGAAGAGCCGGGTGTGGCTCGGTACCTACGACACGGCAGAGGAGGCCGCCCGCGCCTACGACGCCGCCGCTCGAGAGTTCCGGGGTGCCAAGGCAAAAACAAACTTTCCGTTTGCATCACAGTCGATGGTCGGCTGTGGCGGCAGCCCCAGCAGCAATAGCACGGTAGACACCGGTGGCGGCGGGGTTCAGACGCCTATGCGGGCCATGCCTCTGCCGCCGACTCTGGACTTGGATTTGTTCCACCGCGCGGCTGCTGTGACTGCAGTCGCCGGCACCGGCGTTCGCTTT CCTTTCAGAGGATATCCCGTTGCACGTCCAGCAACGCATCCTTACTTTTTCTATGAGCAG ] [+] EMBL AU083351 [ TTTGTTCCACCGCGCGGCTGCTGTGACTGCAGTCGCCGGAACCGGCGTTCGCTTTCCCTTTCAGAGGATATCCCCTTGCACGTCCAGCAACGCATCCTTACTTTTTCTATGAGCAGGCTGCAGCGGTTGCCGCAGCTGAGGCTGGATACCGTATGATGAAGCTTGCACCGCCGGTCACCGTGGCGGCGGTTGCACAAAGTGACTCCGACTCCTCGTCGGTGGTTGATCTCGCGCCGTCACCTCCAGCGGTTACGGCGAACAAGGCGGCAGCTTTCGATCTGGATCTGAACCGGCCGCCGCCGGTAGAGAACTAGCTCAGGATGGGTTAGCTGACGACTTTGTAGTTTCTCTCTTATTTTCTTCTTTGATGGATATTTCTCTCCGATGTTTTGGTCCTC TGTGTTTTTGTTTAGTAGCCTGTGA GAGACGGAAGAGCCTTGTAAATAG TTTTTCTGCCGAGGGCGAAATTCATCTTGGGATCTGTTAATTAGAACAGATCATGCCGGCGATGAGATGGACTAAACCGTGGAGTGTATGTATTCCTTTATATTAGTATGAAGAAATTATTCAGAAAGTCACAAAAATATCTGTGCACACTGAGTTTGATTGACGTTTTTAAAAAAAAAAAA] [+] EMBL C72212 [ TTTCTATGAGCAGGCTGCAGCGGCTGCCGCAGCTGAGGCTGGATACCGTATGATGAAGCTTGCACCGCCGGTCACCGTGGCGGCGGTTGCACAAAGTGACTCCGACTCCTCGTCGGTGGTTGATCTCGCGCCGTCACCTCCAGCGGTTACGGCGAACAAGGCGGCAG TTTCGATCTGGATCTGAACCGGCCGCCGNCGGTAGAGAACTAGCTCAGGATGGGTTAGCTGACGACTTTGTAGTTTCTCTCTTATTTTCTTCTTTGATGGATATTTCTCTCCGATGTTTTGGTCCTC TGTGTTTTTGTTTAGTAGCCTGTGAGGAGACGGAAGAGCCTTGTAAATAGTTTTTTCTGCCGAG ] [+] EMBL AU165445 [ TTCTATGAGCAGGCTGCAGCGGNTGCCGCAGCTGAGGCTGGATACCGTATGATGAAGCTTGCACCGCCGGTCACCGTGGCGGCGGTTGCACAAAGTGACTCCGACTCCTCGTCGGTGGTTGATCTCGCGCCGTCACCTCCAGCGGTTACGGCGAACAAGGCGGCAGCTTTCGATCTGGATCTGAACCGGCCGCCGCCGGTAGAGAACTAGCTCAGGATGGGTTAGCTGACGACTTTGTAGTTTCTCTCTTATTTTCTTCTTTGATGGATATTTCTCTCCGATGTTTTGGTCCTC TGTGTTTTTGTTTAGTAGCCTGTGA GAGACGGAAGAGCCTTGTAAATAG TTTTTCTGCCGAGGGCGAAATTCATCTTGGGATCTGTTAATTAGAACAGATCATGCCGGCGATGAGATGGACTAAACCGTGGAGTGTATGTATTCCTTTATATTAGTATGAAGAAATTATTCAGAAAGTCAAAAAAA ] [+] EMBL AU222695 [ TGGATACCGTATGATGAAGCTTGCACCGCCGGTCACCGTGGCGGCGGTTGCACAAAGTGACTCCGACTCCTCGTCGGTGGTTGATCTCGCGCCGTCACCTCCAGCGGTTACGGCGAACAAGGCGGCAGCTTTCGATCTGGATCTGAACCGGCCGCCGCCGGTAGAGAACTAGCTCAGGATGGGTTAGCTGACGACTTTGTAGTTTCTCTCTTATTTTCTTCTTTGATGGATATTTCTCTCCGATGTTTTGGTCCTC TGTGTTTTTGTTTAGTAGCCTGTGA GAGACGGAAGAGCCTTGTAAATAG TTTTTCTGCCGAGGGCGAAATTCATCTTGGGATCTGTTAATTAGAACAGATCATGCCGGCGATGAGATGGACTAAACCGTGGAGTGTATGTATTCCTTTATATTAGTATGAAGAAATTATTCAGAAAGTCCCAAAAAaaaaaaa ] [+] EMBL AU181581 [ ACCGTATGATGAAGCTTGCACCGCCGGTCACCGTGGCGGCGGTTGCACAAAGTGACTCCGACTCCTCGTCGGTGGTTGATCTCGCGCCGTCACCTCCAGCGGTTACGGCGAACAAGGCGGCAGCTTTCGATCTGGATCTGAACCGGCCGCCGCCGGTAGAGAACTAGCTCAGGATGGGTTAGCTGACGACTTTGTAGTTTCTCTCTTATTTTCTTCTTTGATGGATATTTCTCTCCGATGTTTTGGTCCTC TGTGTTTTTGTTTAGTAGCCTGTGA GAGACGGAAGAGCCTTGTAAATAG TTTTTCTGCCGAGGGCGAAATTCATCTTGGGATCTGTTAATTAGAACAGATCATGCCGGCGATGAGATGGACTAAACCGTGGAGTGTATGTATTCCTTTATATTAGTATGAAGAAATTATTCAGAAAGTCAAAAA ] [-] EMBL CF308830 [ GTTGCACAAAGTGACTCCGACTCCTCGTCGGTGGTTGATTTTGGGCCGTCACCTCCAACGGTTACGGGGAACAAGGCGGCAGCTTTCGATTTGGATTTGAACCGGCCCCCCCCGGTAAAGAACTAGCTCAGGATGGGTTAGCTGACGACTTTGGAGTTTCTCTCTTATTTTTTTCTTTGAAGGAAATTTCTCTCCGAAGTTTTGGTCCTC TGGGTTTTCGTTTAGTAGCCTGTGA AAAACGGAAAAGCCTTGTAAATAG TTTTTTTGCCGAGGGCGAAATTCATTTTGGGATTTGTTAATTAGAACAGATCATGCCGGCGATGAGATGGACTAAACCGTGGAGGGGATGTATTCCTTTATATTAGTATGAAGAAA ] [+] EMBL CA767024 [ TCTGAACCGGCCGCCGCCGGTAGAGAACTAGCTCAGGATGGGTTAGCTGACGACTTTGTAGTTTCTCTCTTATTTTCTTCTTTGATGGATATTTCTCTCCGATGTTTTGGTCCTCTTTGTGTTTTTGTTTAGTAGCCTGTGA GAGACGGAAGAGCCTTGTAAATAG TTTTTCTGCCGAGGGCGAAATCCATCTTGGGATCTGTTAATTAGAACAGATCATGCCGGCGATGAGATGGACTAAACCGTGGAGTGTATGTATTCCTTTATATTAGTATGAAGAAATTATTCAGA ] [-] EMBL CF311085 [ GGAAGAGCCTTGTAAATAG TTTTTCTGCCGAGGGCGAAATTCATCTTGGGATCTGTTAATTAGAACAGATCATGCCGGCGATGAGATGGACTAACCCGTGGAGTGTATGTATTCCTTTATATTAGTATGAAGAAATTATTCAGAAAGTCA ] consensusID : consensus_15758#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 794 fasta sequence [NCNANAACCCAACCTCCCAAAACACCCACCCGGTTTACCAGAGATCCGCGCCCGCCACTTGTAAACCTGCTGCACCCATGGCGCCCAGAGCAGCTACGGTGGAGAAGGTTGCTGTGGCGCCACCCACCGGGCTTGGTCTTGGCGTCGGCGGAGGTGTCGGAGCCGGGGGTCCTCACTACAGGGGCGTCCGCAAGCGCCCGTGGGGGCGTTACGCAGCGGAGATCCGTGACCCTGCCAAGAAGAGCCGGGTGTGGCTCGGTACCTACGACACGGCAGAGGAGGCCGCCCGCGCCTACGACGCCGCCGCTCGAGAGTTCCGGGGTGCCAAGGCAAAAACAAACTTTCCGTTTGCATCACAGTCGATGGTCGGCTGTGGCGGCAGCCCCAGCAGCAATAGCACGGTAGACACCGGTGGCGGCGGGGTCAGACGCCTATGCGGCCCATGCTTCTGCCGCCGACTCTGGACTGGGATTTGTTCCACCGCGCGGTTGCTGTGACTGCAGTCGCCGCGACCGCGTCCGCTTTCTTTTCAAAGATATCCGGTGGACGTCCAGCACNCATTCTTACTTTTCTATAACAGGCTGCACCGGTGCCGACTTAGGTTGAATCCTTTATGAACTGGACGCCGTCACCGTGCGCGGTGCACAAGGCTCAACTCCTCTGGGGTGATCCCGCGTACTTCACGTTCGGAACAGGGGAATTTAATGGATTACCGCCGCCGGAAAACTACAGGGTACGACATTGTTCTTTATCTTTGGGAATTTCCAGGNGCCCGGTGTAACCTGAAAGAAACT] [+] EMBL C97758 [NCNANAACCCAACCTCCCAAAACACCCACCCGGTTTACCAGAGATCCGCGCCCGCCACTTGTAAACCTGCTGCACCCATGGNGCCCAGAGCAGCTACGGTGGAGAAGGTTGCTGTGGCGCCACCCACCGGGCTTGGTCTTGGCGTCGGCGGAGGTGTCGGAGCCGGGGGTCCTCACTACAGGGGCGTCCGCAAGCGCCCGTGGGGGCNTTACGCAGCGGAGATCCGTGACCCTGCCAAGAAGAGCCGGGTGTGGCTCGGTACCTACGACACGGCAGAGG ] [+] EMBL AW155552 [ caAACCCAACCTCCCAAAACACCCACCCGGTTTACCAGAGATCCGCGCCCGCCACTTGTAAACCTGCTGCACCCATGGCGCCCAGAGCAGCTACGGTGGAGAAGGTTGCTGTGGCGCCACCCACCGGGCTTGGTCTTGGCGTCGGCGGAGGTGTCGGAGCCGGGGGTCCTCACTACAGGGGCGTCCGCAAGCGCCCGTGGGGGCGTTACGCAGCGGAGATCCGTGACCCTGCCAAGAAGAGCCGGGTGTGGCTCGGTACCTACGACACGGCAGAGGAGGCCGCCCGCGCCTACGACGCCGCCGCTCGAGAGTTCCGGGGTGCCAAGGCAAAAACAAACTTTCCGTTTGCATCACAGTCGATGGTCGGCTGTGGCGGCAGCCCCAGCAGCAATAGCACGGTAGACACCGGTGGCGGCGGGGTCAGACGCCTATGCGGCCCATGCTTCTGCCGCCGACTCTGGACTGGGATTTGTTCCACCGCGCGGTTGCTGTGACTGCAGTCGCCGCGACCGCGTCCGCTTTCTTTTCAAAGATATCCGGTGGACGTCCAGCACNCATTCTTACTTTTCTATAACAGGCTGCACCGGTGCCGACTTAGGTTGAATCCTTTATGAACTGGACGCCGTCACCGTGCGCGGTGCACAAGGCTCAACTCCTCTGGGGTGATCCCGCGTACTTCACGTTCGGAACAGGGGAATTTAATGGATTACCGCCGCCGGAAAACTACAGGGTACGACATTGTTCTTTATCTTTGGGAATTTCCAGGNGCCCGGTGTAACCTGAAAGAAACT] [+] EMBL C26399 [ ACCCAACCTCCCAAAACACCCACCCGGTTTACCAGAGATCCGCGCCCGCCACTTGTAAACCTGCTGCACCCATGGCGCCCAGAGCAGCTACGGTGGAGAAGGTTGCTGTGGCGCCACCCACCGGGCTTGGTCTTGGCGTCGGCGGAGGTGTCGGAGCCGGGGGTCCTCACTACAGGGGCGTCCGCAAGCGCCCGTGGGGGCGTTACGCAGCGGAGATCCGTGACCCTGCCAAGAAGAGCCGGGTGTGGCTCGGTACCTACGACACGGCAGAGGAGGCCGCCCGCGCCTACGACGCCGNCGNTCGAGAGTTCCGGGGTGCCAAGGCAAAAACAAACTTTCCGTTTGCATNACAGTCGATGGTCGGCTGTGGNGGAA CCCAG ] [+] EMBL OSC24941 [ CTCCCAAAACACCCACCCGGTTTACCAGAGATCCGCGCCCGCCACTTGTAAACCTGCTGCACCCATGGCGCCCAGAGCAGCTACGGTGGAGAAGGTTGCTGTGGCGCCACCCACCGGGCTTGGTCTTGGCGTCGGCGGAGGTGTCGGAGCCGGGGGTCCTCACTACAGGGGCGTCCGCAAGCGCCCGTGGGGGCGTTACGCAGCGGAGATCCGTGACCCTGCCAAGAAGAGCCGGGTGTGGCTCGGTACCTACGACANGGCAGAGGAGGCCGCCCGCGCC ] [+] EMBL OSC24741 [ CTCCCAAAACACCCACCCGGTTTACCAGAGATCCGCGCCCGCCACTTGTAAACCTGCTGCACCCATGGNGCCCAGAGCAGCTACGGTGGAGAAGGTTGCTGTGGCGCCACCCACCGNGCTTNGTCTTGGNGTCGGCGGAGGTNTCGGAGCCGNGGGTCCTCACTACAGGNGNGTCCGNAAGn ] consensusID : consensus_15758#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 677 fasta sequence [GCCGCCCGGGCTCTACGGCGCCCCCGCTTGAGAGTTCCGGGGTGCCCAGGGAAAAACAAACTTCCGTTTGCATCCCAATCGTTGGTTGGGTGTGGCGGCAGCCCCACCACCAATAGCCCGGTAGACCCCGGTGGCGGCGGGGTTCAGACGCCTATGCGGGGCATGCCTCTGCCGCCGGCTTTGGGCTTGGGTTTGTTCCTCCGCGCGGCTTCTGTTTCTGCAGTTGCCGGGCCCGGCGTTCGCTTTCCTTTCAGGGGGTTTCCCGTTGCCCGTCCAGCAACGCATCCATACTTTTTTTATGAGCAGGCTGCAGCGGCTTCCGCAGGTGAGGCTGGGTTCCGTTTGATGAAGCTTGCCCCCCCGGTTTCCGTGGCGGCGGTTGCCCAAAGTGGCTCCGGCTCCTTGTCGGTGGTTGGTTTTGGGCCGTCCCCTTCAGCGGTTTCGGGGAACAAGGCGGCAGCTTTTGATTTGGGTTTGAACCGGCCGCCCCCGGTTGAGAACTAGCTCCGGATGGGTTAGCTGACGACTTTGTAGTTTCTCTCTTATTTTTTTCTTTGATGGGTTTTTTTTTCCGATGTTTTGGTCCTCTTTGTGTTTTTGTTTTGTAGCCTGTGAGAGGCGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCAAAAAAAAAAAAAAAAA] [-] EMBL CA759952 [GCCGCCCGGGCTCTACGGCGCCCCCGCTTGAGAGTTCCGGGGTGCCCAGGGAAAAACAAACTTCCGTTTGCATCCCAATCGTTGGTTGGGTGTGGCGGCAGCCCCACCACCAATAGCCCGGTAGACCCCGGTGGCGGCGGGGTTCAGACGCCTATGCGGGGCATGCCTCTGCCGCCGGCTTTGGGCTTGGGTTTGTTCCTCCGCGCGGCTTCTGTTTCTGCAGTTGCCGGGCCCGGCGTTCGCTTTCCTTTCAGGGGGTTTCCCGTTGCCCGTCCAGCAACGCATCCATACTTTTTTTATGAGCAGGCTGCAGCGGCTTCCGCAGGTGAGGCTGGGTTCCGTTTGATGAAGCTTGCCCCCCCGGTTTCCGTGGCGGCGGTTGCCCAAAGTGGCTCCGGCTCCTTGTCGGTGGTTGGTTTTGGGCCGTCCCCTTCAGCGGTTTCGGGGAACAAGGCGGCAGCTTTTGATTTGGGTTTGAACCGGCCGCCCCCGGTTGAGAACTAGCTCCGGATGGGTTAGCTGACGACTTTGTAGTTTCTCTCTTATTTTTTTCTTTGATGGGTTTTTTTTTCCGATGTTTTGGTCCTCTTTGTGTTTTTGTTTTGTAGCCTGTGAGAGGCGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCAAAAAAAAAAAAAAAAA] consensusID : consensus_15758#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 607 fasta sequence [ATTNGGACTTGGATGTGTTCCCCCCGGCTGTGTGCTCCATNCCCGCCCGGCGTTCGCTTCCTTTCCAGAGGATNTCCCTTGCACGTCCAGCACGCATCCTTACNTTGTNTCTATGACAGGCTGCATGCGGCT-CC-CATCTGAGGCTGGATCACCGTATGATGGAAGCTNGCCCCGCCGGTCACACCGTGGCGGGCGGTTGCAC-AAGTGACTCCGACTCCTCGTCGGGGGTTGATCTCGCGCCGTCACCTCCAGCGGTTACGGCGAACAA-GCGGCAGCTTTCGATCTGGATCTGAACC-GCCNCC-CCGGTAGAGAACTAGCTCAGGATGGGTTAGCTGACGACTTTGTAGTTTCTCTCTNNGATNTTCTTCTGTTGATGGATATTTCTCTCCGATGTTTTGGTCCTCTGTGNTTTTGTTTAGTAGCCTGTGAGAGACGGAAGACCCTTGTAAATAGTTTTTCTGCCGAGGGCGAAATTCATCTTGGGATCTGTTAATTAGANCAGATCATGCCGGCGATGAGATGGACTAAACCCNTGGAGTGGTATGTATTCCCTTTATATTAGTATGAAGAAATTATTCAGAAAGTCACCCAAAAAAAAAAAAAAAAA] [+] EMBL BI806251 [ATTNGGACTTGGATGTGTTCCCCCCGGCTGTGTGCTCCATNCCCGCCCGGCGTTCGCTTCCTTTCCAGAGGATNTCCCTTGCACGTCCAGCACGCATCCTTACNTTGTNTCTATGACAGGCTGCATGCGGCT CC CATCTGAGGCTGGATCACCGTATGATGGAAGCTNGCCCCGCCGGTCACACCGTGGCGGGCGGTTGCAC AAGTGACTCCGACTCCTCGTCGGGGGTTGATCTCGCGCCGTCACCTCCAGCGGTTACGGCGAACAA GCGGCAGCTTTCGATCTGGATCTGAACC GCCNCC CCGGTAGAGAACTAGCTCAGGATGGGTTAGCTGACGACTTTGTAGTTTCTCTCTNNGATNTTCTTCTGTTGATGGATATTTCTCTCCGATGTTTTGGTCCTCTGTGNTTTTGTTTAGTAGCCTGTGAGAGACGGAAGACCCTTGTAAATAGTTTTTCTGCCGAGGGCGAAATTCATCTTGGGATCTGTTAATTAGANCAGATCATGCCGGCGATGAGATGGACTAAACCCNTGGAGTGGTATGTATTCCCTTTATATTAGTATGAAGAAATTATTCAGAAAGTCACCCAAA ] [+] EMBL AU058041 [ GGCTGCA GCGGCTGCCGCAGCTGAGGCTGGAT ACCGTATGAT GAAGCTTGCACCGCCGGT CACCGTGGC GGCGGTTGCACAAAGTGACTCCGACTCCTCGTCGGTGGTTGATCTCGCGCCGTCACCTCCAGCGGTTACGGCNAACAAGGCGGCAGCTTTCGATCTGGATCTGAACCGGCCGCCGCCGGTAGAGAACTAGCTCAGGATGGGTTAGCTGACGACTTTGTAGTTTCTCTCT TATTTTCTTCT TTGATGGATATTTCTCTCCGATGTTTTGGTCCTCTGTGTTTTTGTTTAGTAGCCTGTGAGAGACGGAAGAGCCTTGTAAATAGTTTTTCTGCCGAGGGCGAAATTCATCTTGGGATCTGTTAATTAGAACAGATCATGCCGGCGATGAGATGGACTAAA CCGTGGAGT GTATGTATT CCTTTATATTAGTATGAAGAAATTATTCAGAAAGTCACAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15758#2 ------------------------------------------------------------ consensus_15758#3 ------------------------------------------------------------ consensus_15758#0 TGAAGGAGTAGAAAGCCCACACACCCAAACCCAACCTCCCAAAACACCCACCCGGTTTAC 60 consensus_15758#1 ------------------------------------------------------------ consensus_15758#2 ------------------------------------------------------------ consensus_15758#3 ------------------------------------------------------------ consensus_15758#0 CAGAGATCCGCGCCCGCCACTTGTAAACCTGCTGCACCCATGGCGCCCAGAGCAGCTACG 120 consensus_15758#1 ------------------------------------------------------------ consensus_15758#2 ------------------------------------------------------------ consensus_15758#3 ------------------------------------------------------------ consensus_15758#0 GTGGAGAAGGTTGCTGTGGCGCCACCCACCGGGCTTGGTCTTGGCGTCGGCGGAGGTGTC 180 consensus_15758#1 ------------------------------------------------------------ consensus_15758#2 ------------------------------------------------------------ consensus_15758#3 ------------------------------------------------------------ consensus_15758#0 GGAGCCGGGGGTCCTCACTACAGGGGCGTCCGCAAGCGCCCGTGGGGGCGTTACGCAGCG 240 consensus_15758#1 ------------------------------------------------------------ consensus_15758#2 ------------------------------------------------------------ consensus_15758#3 ------------------------------------------------------------ consensus_15758#0 GAGATCCGTGACCCTGCCAAGAAGAGCCGGGTGTGGCTCGGTACCTACGACACGGCAGAG 300 consensus_15758#1 ------------------------------------------------------------ consensus_15758#2 ---GCCGCCCGGGCTCTACGGCGCCCCCGCTTGAGAGTTCCGGGGTGCCCAGGGAAAAAC 57 consensus_15758#3 ------------------------------------------------------------ consensus_15758#0 GAGGCCGCCCGCGC-CTACGACGCCGCCGCTCGAGAGTTCCGGGGTGCCAAGGCAAAAAC 359 consensus_15758#1 --------------------------------------------------------NCNA 4 consensus_15758#2 AAACTT-CCGTTTGCATCCCAATCGTTGGTTGGGTGTGGCGGCAGCCCCACCACCAATAG 116 consensus_15758#3 ------------------------------------------------------------ consensus_15758#0 AAACTTTCCGTTTGCATCACAGTCGATGGTCGGCTGTGGCGGCAGCCCCAGCAGCAATAG 419 consensus_15758#1 NAACCCAACCTCCCAAAACACCCACCCGGTTTACCAGAGATCCGCGCCCGCCACTTGTAA 64 consensus_15758#2 CCCGGTAGACCCCGGTGGCGGCGGGGTTCAGACGCCTATGCGGGGCATGCCTCTGCCGCC 176 consensus_15758#3 ------------------------------------------------------------ consensus_15758#0 CACGGTAGACACCGGTGGCGGCGGGGTTCAGACGCCTATGCGGGCCATGCCTCTGCCGCC 479 consensus_15758#1 ACCTGCTGCACCCATGGCGCCCAGAGCAGCTACGGTGGAGAAGGTTGCTGTGGCGCCACC 124 consensus_15758#2 GGCTTTGGGCTTGGGTTTGTTCCTCCGCGCGGCTTCTGTTTCTGCAGTTGCCGGGCCCGG 236 consensus_15758#3 --ATTNGGACTTGGATGTGTTCCCCC---CGGCT---GTGTGCTCCATNCCCG--CCCGG 50 consensus_15758#0 GACTCTGGACTTGGATTTGTTCCACCGCGCGGCTGCTGTGACTGCAGTCGCCGGCACCGG 539 consensus_15758#1 --CACCGGGCTTGGTCTTGGCGTCGGCGGAGGTGTCGGAGCCGGGGGTCCTCACTACAGG 182 ** ***** ** ** * * * * ** consensus_15758#2 --CGTTCGCTTTCCTTTCAGGGGGTTTCCCGTTGC--CCGTCCAGCAACGCATCCATACT 292 consensus_15758#3 --CGTTCGCTTCCTTTCCAGAGGATNTCCC-TTGC--ACGTCCAGCA-CGCATCCTTACN 104 consensus_15758#0 --CGTTCGCTTTCCTTTCAGAGGATATCCCGTTGC--ACGTCCAGCAACGCATCCTTACT 595 consensus_15758#1 GGCGTCCGCAAGCGCCCGTGGGGGCGTTACGCAGCGGAGATCCGTGACCCTGCCAAGAAG 242 *** *** * * ** * * ** *** * * * * consensus_15758#2 TTTTTTATGAG-CAGGCTGCA-GCGGCTTCCGCAGGTGAGGCTGGGTT-CCGTTTGATG- 348 consensus_15758#3 TTGTNTCTATGACAGGCTGCATGCGGCTCCCATC--TGAGGCTGGATCACCGTATGATGG 162 consensus_15758#0 TTTTCTATGAG-CAGGCTGCA-GCGGCTGCCGCAGCTGAGGCTGGATA-CCGTATGATG- 651 consensus_15758#1 AGCCGGGTGTGGCTCGGTACCTACGAC-ACGGCAGAGGAGGCCGCCCGCGCCTACGACG- 300 * * * * * * ** * * ***** * * * ** * consensus_15758#2 AAGCTTGCCCCCCCGGTTTC--CGTGGCGG--CGGTTGCCCAAAGTGGCTCCGGCTCCTT 404 consensus_15758#3 AAGCTNGCCCCGCCGGTCACACCGTGGCGGG-CGGTTGCACAA-GTGACTCCGACTCCTC 220 consensus_15758#0 AAGCTTGCACCGCCGGTCAC--CGTGGCGG--CGGTTGCACAAAGTGACTCCGACTCCTC 707 consensus_15758#1 --CCGCCGCTCGAGAGTTCCGGGGTGCCAAGGCAAAAACAAACTTTCCGTTTGCATCACA 358 * * ** * *** * * * * * * * ** consensus_15758#2 GTCGGTGGTTGGTT-TTGGGCCGTCCCCTTCAGCGGT--TTCGGGGAACAA----GGCGG 457 consensus_15758#3 GTCGGGGGTTGATC-TCGCGCCGTCACCTCCAGCGGT--TACGGCGAACAA----G-CGG 272 consensus_15758#0 GTCGGTGGTTGATC-TCGCGCCGTCACCTCCAGCGGT--TACGGCGAACAA----GGCGG 760 consensus_15758#1 GTCGATGGTCGGCTGTGGCGGCAGCCCCAGCAGCAATAGCACGGTAGACACCGGTGGCGG 418 **** *** * * * * * * ** **** * *** *** * *** consensus_15758#2 CAGCTTTTGATTTGGGTTTGAACCGG----CCGCCCCCGGTTGAGAACTAGCTCCGG--- 510 consensus_15758#3 CAGCTTTCGATCTGGATCTGAACCGC----CN--CCCCGGTAGAGAACTAGCTCAGG--- 323 consensus_15758#0 CAGCTTTCGATCTGGATCTGAACCGG----CCGCCGCCGGTAGAGAACTAGCTCAGG--- 813 consensus_15758#1 CGGGGTCAGACGCCTATGCGGCCCATGCTTCTGCCGCCGACTCTGGACTGGGATTTGTTC 478 * * * ** * * ** * * *** * *** * * consensus_15758#2 -ATGGGTTAGCTGACGACTTTGTAGTTTCTCTCTT--ATTTTTTTCT-TTGATGGGTTTT 566 consensus_15758#3 -ATGGGTTAGCTGACGACTTTGTAGTTTCTCTCTNNGATNTTCTTCTGTTGATGGATATT 382 consensus_15758#0 -ATGGGTTAGCTGACGACTTTGTAGTTTCTCTCTT--ATTTTCTTCT-TTGATGGATATT 869 consensus_15758#1 CACCGCGCGGTTGCTGTGACTGCAGTCGCCGCGACCGCGTCCGCTTTCTTTTCAAAGATA 538 * * * ** * ** *** * * * ** * consensus_15758#2 TTTTTCCGATGTTTTGGTCCTCTTTGTGTTTTTGTTTTGTAGCCTGTGAGAGGCGGGAAA 626 consensus_15758#3 TCTCTCCGATGTTTTGGTCCTCT--GTGNTTTTGTTTAGTAGCCTGTGAGAGACGGAAGA 440 consensus_15758#0 TCTCTCCGATGTTTTGGTCCTCT--GTGTTTTTGTTTAGTAGCCTGTGAGAGACGGAAGA 927 consensus_15758#1 TCCGGTGGACGTCCAGCACNCATTCTTACTTTTCTATAACAGGCTGC-ACCGGTGCCGAC 597 * ** ** * * * * **** * * ** *** * * * consensus_15758#2 AAAAAAAAAAAAAA------AAAAAAAAAAAAAAAAAACCAAAAA------AAAAAAAAA 674 consensus_15758#3 CCCTTGTAAATAGTTTTTCTGCCGAGGGCGAAATTCATCTTGGGATCTGTTAATTAGANC 500 consensus_15758#0 GCCTTGTAAATAGTTTTTCTGCCGAGGGCGAAATTCATCTTGGGATCTGTTAATTAGAAC 987 consensus_15758#1 TTAGGTTGAATCCTTTATGAACTGGACGCCGTCACCGTGCGCGGTGC----ACAAGGCTC 653 ** * consensus_15758#2 AAA--------------------------------------------------------- 677 consensus_15758#3 AGATCATGCCGG-CGATGAGATGGACTAAACCCNTGGAGTGGTATGTATTCCCTTTATAT 559 consensus_15758#0 AGATCATGCCGG-CGATGAGATGGACTAAACC-GTGGAGTG-TATGTATTCC-TTTATAT 1043 consensus_15758#1 AACTCCTCTGGGGTGATCCCGCGTACTTCACGTTCGGAACAGGGGAATTTAATGGATTAC 713 * consensus_15758#2 ------------------------------------------------------------ consensus_15758#3 TAGTATGAAGAAATTATTCAGAAAGTCACCCAAAAAAAAAAAAAAAAA------------ 607 consensus_15758#0 TAGTATGAAGAAATTATTCAGAAAGTCACAAAAATATCTGTGCACACTGAGTTTGATTGA 1103 consensus_15758#1 CGCCGCCGGAAAACTACAGGGTACGACATTGTTCTTTATCTTTGGGAATTTCCAGGNGCC 773 consensus_15758#2 --------------------- consensus_15758#3 --------------------- consensus_15758#0 CGTTTTTAAAAAAAAAAAA-- 1122 consensus_15758#1 CGGTGTAACCTGAAAGAAACT 794 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||