These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15912#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 18 consensus length = 1067 fasta sequence [CTGCTGCTTGGGATTTGATTAGTTGTGTTGAGAGATGGCCACACCGCAACTGCTGCTACGCCGCGCCTTCTCCTCCTCCTTCCTCTC-CTCCCCATTCCGCCG-CCCGCCACTCCACCCCGCCCGCTCCTTCGTTCCCCCCCGCGCCGCCATGGCATCCTCCGCCGCGCCGTTCCACATGGTCCAGATCCAGCGCGACGACACGACTTTTGATGCCTATGTTGTTGGAAAAGAGAATGCTCCTGGAATTGTTGTTTTGCAAGAGTGGTGGGGGGTTGACTATGAGATCAAGAATCATGCTGTCCACATTTCCCAAATT-GGTGAAGGATACAGAGCTCTCATTCCAGATTTGTATCGTGGTAAGGTTGCTCTTGATGTAGCGGAAGCTC-AGCATC-TGATGGAAGGTCTAGAC-TGGCCGGGTGC-GGTC-AAGGATA-TTCAGGCTTCAGTTAAATGGCTCAAGGCAAATGGATCACCCAAGGTTGGTGTTACTGGATATTGCATGGGAGG-CG-CTTTGTCAATTGCAAGTGGAGTTTCAGTCCCAGAGGTTGAT--GCTGTTGTG-GCTTTCTATGGGACACCACCT-TCTGAGCTTGCCGATGCTTCCAAGGCCCAGGCTCCCATCCAGGCTCATTTTGGGGAGCTTGACAGTTTTGTTGGATTTGCAGATGTCA-CGGCAGCCA-AGTCG-CTGGAGGA-G-AAGCTCAA--GTCATCTGGCGTGCCACATG-AAGTCCACATCTA-CCCTGGCTGC-TCGCA--TGCTTTTAT-GAACACA-TCA---CCTGAGG-CCGTCA-AGAGGA-GGAAGGAGATGGGTCTGACTGATGAGAACCAGGCAGCA-ATTGACCTGGCCTGGTCTCGCTTCTCGACTTGGATGGGTCGTTTCCTTGGATCGGCGTGAGCCAT-TTACGCATATATGTTGTCAACCTGTCAGGTTGTATGAATAAAATCATTCAGGCCAGATGCAGAGTAATTAAGTATACCCAAACCAAATAATTGTGCTGTGTT-GGACTATGTGAACATGCCATGCTTTGGTTTGCGAATTATCTGTGG--TTTTACTGTGC-TTTCG-AGATTGCATAAAAAAAATG] [+] EMBL AK106208 [CTGCTGCTTGGGATTTGATTAGTTGTGTTGAGAGATGGCCACACCGCAACTGCTGCTACGCCGCGCCTTCTCCTCCTCCTTCCTCTC CTCCCCATTCCGCCG CCCGCCACTCCACCCCGCCCGCTCCTTCGTTCCCCCCCGCGCCGCCATGGCATCCTCCGCCGCGCCGTTCCACATGGTCCAGATCCAGCGCGACGACACGACTTTTGATGCCTATGTTGTTGGAAAAGAGAATGCTCCTGGAATTGTTGTTTTGCAAGAGTGGTGGGGGGTTGACTATGAGATCAAGAATCATGCTGTCCACATTTCCCAAATT GGTGAAGGATACAGAGCTCTCATTCCAGATTTGTATCGTGGTAAGGTTGCTCTTGATGTAGCGGAAGCTC AGCATC TGATGGAAGGTCTAGAC TGGCCGGGTGC GGTC AAGGATA TTCAGGCTTCAGTTAAATGGCTCAAGGCAAATGGATCACCCAAGGTTGGTGTTACTGGATATTGCATGGGAGG CG CTTTGTCAATTGCAAGTGGAGTTTCAGTCCCAGAGGTTGAT GCTGTTGTG GCTTTCTATGGGACACCACCT TCTGAGCTTGCCGATGCTTCCAAGGCCCAGGCTCCCATCCAGGCTCATTTTGGGGAGCTTGACAGTTTTGTTGGATTTGCAGATGTCA CGGCAGCCA AGTCG CTGGAGGA G AAGCTCAA GTCATCTGGCGTGCCACATG AAGTCCACATCTA CCCTGGCTGC TCGCA TGCTTTTAT GAACACA TCA CCTGAGG CCGTCA AGAGGA GGAAGGAGATGGGTCTGACTGATGAGAACCAGGCAGCA ATTGACCTGGCCTGGTCTCGCTTCTCGACTTGGATGGGTCGTTTCCTTGGATCGGCGTGAGCCAT TTACGCATATATGTTGTCAACCTGTCAGGTTGTATGAATAAAATCATTCAGGCCAGATGCAGAGTAATTAAGTATACCCAAACCAAATAATTGTGCTGTGTT GGACTATGTGAACATGCCATGCTTTGGTTTGCGAATTATCTGTGG TTTTACTGTGC TTTCG AGATTGCATAtatattctg] [+] EMBL OSS13177A [ TGAGAGATGGCCACACCGCAACTNCTGCTACGCCGCGCCTTCTCCTCCTCCTTCCTCTC CTCCCCATTCCGCCG CCCGCCACTCCACCCCGCCCGCTCCTTCGTTCCCCCCCGCGCCGCCATGGCATCCTCCGCCGCGCCGTTCCACATGGTCCAGATCCAGCGCGACGACACGACTTTTGATGCCTATNTTGTTGGAAAANAGAATGCTCCTGGAATTGTTGTTTTGCAAGAGTGGTGGGGGGTTGACTATAAGATCAAGAATCATGCTGTCCACATTTCCCAAATT GGTGAAGGATACAGAGCTCTCATTCCAGATTTGTATCGTGGTAAGGTTGCTCTTNATGTAGCGGAAG TCAAGCATC TGATGGAAGGTCTAGAC TTGCCGGGTGC GGTCAAAGGATATTTAAGGGTTAAGTAAAATGG GNAAGGGAAATGGnt ] [+] EMBL OSS12930A [ GAGAGATGGCCACACCGCAACTGCTGCTACGCCGCGCCTTCTCCTCCTCCTTCCTCTC CTCCCCATTCCGCCG CCCGNCACTCCACCCCGCCCGCTCCTTCGTTCCCCCCCGCGCCGCCATGGCATCCTCCGCCGCGCCGTTCCACATGGTCCAGATCCAGCGCGACGACACGACTTTTGATGCCTATGTTGTTGGAAAAGAGAATGCTCCTGGAATTGTTGTTTTGCAAGAGTGGTGGGGGGTTGACTATGAGATCAAGAATCATGNTGTCCACATTTCCCAAATTGGGTGA ] [+] EMBL AU096379 [ GAGAGATGGCCACACCGCAACTGCTGCTACGCCGCGCCTTCTCCTCCTCCTTCCTCTCNNACCCCATTCNGCNGACCCGCCACTCCACCCCGCCCGNTCCTTCGTTCCCCCCCGCGCCGCCATGGCATCCTCCGCCGCGCCGTTCCACATGGTCCAGATCCAGCGCGACGACANGACTTTTGATGCCTA GTTGTTGGAAAAGAGAATGCTCCTGGAATTGTTGTTTTGCAAGAGTGGTGGGGGGTTGACTATGAGATCAAGAATCATGCTGTCCACATTTCCCAAATT GGTGAAGGATACAGAGCTCTCATTCCAGATTTGTATC ] [+] EMBL AK059992 [ GCTACGCCGCGCCTTCTCCTCCTCCTTCCTCTC CTCCCCATTCCGCCG CCCGCCACTCCACCCCGCCCGCTCCTTCGTTCCCCCCCGCGCCGCCATGGCATCCTCCGCCGCGCCGTTCCACATGGTCCAGATCCAGCGCGACGACACGACTTTTGATGCCTATGTTGTTGGAAAAGAGAATGCTCCTGGAATTGTTGTTTTGCAAGAGTGGTGGGGGGTTGACTATGAGATCAAGAATCATGCTGTCCACATTTCCCAAATT GGTGAAGGATACAGAGCTCTCATTCCAGATTTGTATCGTGGTAAGGTTGCTCTTGATGTAGCGGAAGCTC AGCATC TGATGGAAGGTCTAGAC TGGCCGGGTGC GGTC AAGGATA TTCAGGCTTCAGTTAAATGGCTCAAGGCAAATGGATCACCCAAGGTTGGTGTTACTGGATATTGCATGGGAGG CG CTTTGTCAATTGCAAGTGGAGTTTCAGTCCCAGAGGTTGAT GCTGTTGTG GCTTTCTATGGGACACCACCT TCTGAGCTTGCCGATGCTTCCAAGGCCCAGGCTCCCATCCAGGCTCATTTTGGGGAGCTTGACAGTTTTGTTGGATTTGCAGATGTCA CGGCAGCCA AGTCG CTGGAGGA G AAGCTCAA GTCATCTGGCGTGCCACATG AAGTCCACATCTA CCCTGGCTGC TCGCA TGCTTTTAT GAACACA TCA CCTGAGG CCGTCA AGAGGA GGAAGGAGATGGGTCTGACTGATGAGAACCAGGCAGCA ATTGACCTGGCCTGGTCTCGCTTCTCGACTTGGATGGGTCGTTTCCTTGGATCGGCGTGAGCCAT TTACGCATATATGTTGTCAACCTGTCAGGTTGTATGAATAAAATCATTCAGGCCAGATGCAGAGTAATTAAGTATACCCAAACCAAATAATTGTGCTGTGTT GGACTATGTGAACATGCCATGCTTTGGTTTGCGAATTATCTGTGG TTTTACTGTGC TTTCG A ] [+] EMBL CF293122 [ CTACGCCGCGCCTTCTCCTCCTCCTTCCTCTC CTCCCCATTCCGCCG CCCGCCACTCCACCCCGCCCGCTCCTTCGTTCCCCCCCGCGCCGCCATGGCATCCTCCGCCGCGCCGTTCCACATGGTCCAGATCCAGCGCGACGACACGACTTTTGATGCCTATGTTGTTGGAAAAGAGAATGCTCCTGGAATTGTTGTTTTGCAAGAGTGGTGGGGGGTTGACTATGAGATCAAGAATCATGCTGTCCACATTTCCCAAATT GGTGAAGGATACAGAGCTCTCATTCCAGATTTGTATCGTGGTAAGGTTGCTCTTGATGTAGCGGAAGCTC AGCATC TGATGGAAGGTCTAGAC TGGCCGGGTGC GGTC AAGGATA TTCAGGCTTCAGTTAAATGGCTCAAGGCAAATGGATCACCCAAGGTTGGTGTTACTGGATATTGCATGGGAGG CG CTTTGTCAATTGCAAGTGGAGTTTCAGTCCCAGAGGTTGAT GCTGTTGTG GCTTTCTATGGGACACCACCT TCTGAGCTTGCCGATGCTTCCAAGGCCCAGGCTCCCAT ] [+] EMBL AK104379 [ TACGCCGCGCCTTCTCCTCCTCCTTCCTCTC CTCCCCATTCCGCCG CCCGCCACTCCACCCCGCCCGCTCCTTCGTTCCCCCCCGCGCCGCCATGGCATCCTCCGCCGCGCCGTTCCACATGGTCCAGATCCAGCGCGACGACACGACTTTTGATGCCTATGTTGTTGGAAAAGAGAATGCTCCTGGAATTGTTGTTTTGCAAGAGTGGTGGGGGGTTGACTATGAGATCAAGAATCATGCTGTCCACATTTCCCAAATT GGTGAAGGATACAGAGCTCTCATTCCAGATTTGTATCGTGGTAAGGTTGCTCTTGATGTAGCGGAAGCTC AGCATC TGATGGAAGGTCTAGAC TGGCCGGGTGC GGTC AAGGATA TTCAGGCTTCAGTTAAATGGCTCAAGGCAAATGGATCACCCAAGGTTGGTGTTACTGGATATTGCATGGGAGG CG CTTTGTCAATTGCAAGTGGAGTTTCAGTCCCAGAGGTTGAT GCTGTTGTG GCTTTCTATGGGACACCACCT TCTGAGCTTGCCGATGCTTCCAAGGCCCAGGCTCCCATCCAGGCTCATTTTGGGGAGCTTGACAGTTTTGTTGGATTTGCAGATGTCA CGGCAGCCA AGTCG CTGGAGGA G AAGCTCAA GTCATCTGGCGTGCCACATG AAGTCCACATCTA CCCTGGCTGC TCGCA TGCTTTTAT GAACACA TCA CCTGAGG CCGTCA AGAGGA GGAAGGAGATGGGTCTGACTGATGAGAACCAGGCAGCA ATTGACCTGGCCTGGTCTCGCTTCTCGACTTGGATGGGTCGTTTCCTTGGATCGGCGTGAGCCAT TTACGCATATATGTTGTCAACCTGTCAGGTTGTATGAATAAAATCATTCAGGCCAGATGCAGAGTAATTAAGTATACCCAAACCAAATAATTGTGCTGTGTT GGACTATGTGAACATGCCATGCTTTGGTTTGCGAATTATCTGTGG TTTTACTGTGC TTTC ] [+] EMBL OSS12345A [ CTCCTCCTTCCTCTC CTCCCCATTCCGCCG NCCGCCACTCCACCCCGNCCGCTCCTTCGTTCCCCCCCGCGCCGCCATGGCATCCTCCGNCGCGCCGTTCCACATGGTCCAGATCCAGCGCGACGACACGACTTTTGATGCCTATGTTGTTGGAAAAGAGAATGCTCCTGGAATTGTTGTTTTGCAAGAGTGGTGGGGGGTTGACTATGAGATCAAGAATCATGCTGTCCACATTTCCCAAATT GGTGAAGGATACAGAGCTCTCATTNCAGATTTGTATCGTGGTAAGGTTGCTCTTGATGTAGCGGAAG TC AGCATC TGATGGAAGGTCTAGAC TGGCCGNGTGC GGTC AAGGATA TTCAGG TTCANTTAAATGGTTCAAGGAAAATGGATCA CCNAGGTTGGTGGTACT GATAnt ] [+] EMBL OSS13253A [ TCCTCCTTCCTCTC CTCCCCATTCCGCCG CCCGCCACTCCACCCCGCCCGCTCCTTCGTTCCCCCCCGCGCCGCCATGGCATCCTCCGCCGCGCCGTTCCACATGGTCCAGATCCAGCGCGACGACACGACTTTTGATGCCTATGTTGTTGGAAAAGAGAATGCTCCTGGAATTGTTGTTTTGCAAGAGTGGTGGGGGGTTGACTATGAGATCAAGAATCATGCTGTCCACATTTCCCAAATT GGTGAAGGATACAGAGCTCTCATTCCAGATTTGTATCGTGGTAAGGTTGCTCTTGATGTAGCGGAAG TC AGCATC TGATGGAAGGTCTAGACTTGGCCGGGTGCGGGTC AAGGATA TTCAGGCTTCAGTTAAATGGCTCAAGGCAAATGG TCANCCAAGGTTGGTG TACTGG TATT CATGGGAGG G GTTTTTCAATTGCAAGTGG G TTCAGTC ] [+] EMBL OSS13552A [ CTTNCTCTC CTCCCCATTCCGCCG CCCGNNACTNCACCCCGCCCGNTCCTTCGTTCCCCCCCGNNNCGNCATGGCATCCTCCGNCGCGCCGTTCCACATGGTCCAGATCCAGCGCGACGACACGACTTTTGATGCCTATGTTGTTGGAAAAGAGAATGCTCCTGGAATTGTTGTTTTGCAAGAGTGGTGGGGGGTTGACTATGAGATCAAGAATCATGCTGTCCACATTTNCCAAATT GGTGAAGGATACAGAGCTCTCATTCCAGATTTGTATCGTGGTAAGGTTGNTCTTGATGTAGC GAAG TC AGCATC TGATGG AGGTCTAGAC TGGCCGGGTG NGTC AAGGATA TTCAGG TTCAGTTAAATGGCTC AGGAAAATGGATCACCC AGGNTGGTGTT CTGGATATTGCATGGGAGG CG TTTTG CNATTGCAAGT ] [+] EMBL CB681268 [ CTTCCCCTC TTCCCCATTCCGCCG CCCGCGACTCCACCCCGCCCGCTCCTTCGTTCCCCCCCGCGCCGCCATGGAATCCTCCGCCGCGCCGTTCCACATGGTCCAGATCCAGCGCGACGACACGACTTTTGATGCCTATGATGTTGGAAAAGAGAATGCTCCTGGAATTGTTGTTTTGCAAGAGTGGTGGGGGGTTGACTATGAGATCAAAAATCATGCTGTCCACATTTCCCAAATT GGTGAAGGATACAGAGCTCTCATTCCAGATTTGTATCGTGGTAAGGTTGCTCTTGATGTAGCGGAAGCTC AACATC TGATGGAAGGTCTACAC TGGCCGGGTGC GGTC AAGGATA TTCAAGCTTCAGTTAAATGGCTCAAGGCAAATGGATCACCCAAGGGTGGTGTTACTGGATATTGCATGGGAGG CG CTTTGTCAATTGCAAGTGGAGTTTCAGTCCCAGAGGTTGAT GCTGTTGTG GCTTTCTATGGGACACCACCT TCTGAGCTTGCCGATGCTTCCAAGGCCCATGCTCCCATCCAGGCTCATTTTGGGGAGCTTGACAGTTTTGTTGGATTTGCAGATGTCA CGGCAGCCA AGTCA CTGGAGGA G AAGCTCAA GTCATCTGGCGTGCCACATG AAGTCCACATCTA CCCTGGCTGC TCGCA TGCTTTTAT GAACACA TCA CCTGATG CCGTCA AGAGGA TGAAGGAGATGGGTCTGACTGATG ] [+] EMBL BE230087 [ C CTCCCCATTCCGCCG CCCGCCACTCCACCCCGCCCGCTCCTTCGTTCCCCCCCGCGCCGCCATGGCATCCTCCGCCCCGCCGTTCCACATGGTCCAGATCCAGCGCGACGACACGACTTTTGATGCCTATGTTGTTGGAAAAGAGAATGCTCCTGGAATTGTTGTTTTGCAAGAGTGGTGGGGGGTTGACTATGAGATCAAGAATCATGCTGTCCACATTTCCCAAATT GGTGAAGGATACAGAGCTCTCATTCCAGATTTGTATCGNGGTAAGGTTGCTCTTGATGTAGCGGAAGCTC AGCATCTTGAT ] [+] EMBL BE230243 [ C CTCCCCATTCCGCCG CCCGCCACTCCACCCCGCCCGCTCCTTCGTTCCCCCCCGCGCCGCCATGGCATCCTCCGCCCCGCCGTTCCACATGGTCCAGATCCAGCGCGACGACACGACTTTTGATGCCTATGTTGTTGGAAAAGAGAATGCTCCTGGAATTGTTGTTTTGCAAGAGTGGTGGGGGGTTGACTATGAGATCAAGAATCATGCTGTCCACATTTCCCAAATT GGTGAAGGATACAGAGCTCTCATTCCAGATTTGTATCGTGGTAAGGTTGCTCTTGATGTAGCGGAAGCTC AGCATC TGATGGAAGGTCTAGAC TGGCCGGGTGC GGTC AAGGATA TTCAGGCTTCAGTTAAATGGCTCAAGGCAAATGGATCACCCAAGGTTGGTG TACTGGATATTGCATGGGAGG CG CTTTGTCAATTGCAAGTGGAG ] [+] EMBL CF323414 [ CAAATT GGTGAAGGATACAGAGCTCTCATTCCAGATTTGTATCGTGGTAAGGTTGCTCTTGATGTAGCGGAAGCTC AGCATC TGATGGAAGGTCTAGAC TGGCCGGGTGC GGTC AAGGATA TTCAGGCTTCAGTTAAATGGCTCAAGGCAAATGGATCACCCAAGGTTGGTGTTACTGGATATTGCATGGGAGG CG CTTTGTCAATTGCAAGTGGAGTTTCAGTCCCAGAGGTTGAT GCTGTTGTG GCTTTCTATGGGACACCACCT TCTGAGCTTGCCGATGCTTCCAAGGCCCAGGCTCCCATCCAGGCTCATTTTGGGGAGCTTGACAGTTTTGTTGGATTTGCAGATGTCA CGGCAGCCA AGTCG CTGGAGGA G AAGCTCAA GTCATCTGGCGTGCCACATG AAGTCCACATCTA CCCTGGCTGC TCGCA TGCTTTTAT GAACACA TCA CCTGAGG CCGTCA AGAGGA GGAAGGAGATGGGTCTGACTGATGAGAACCAGGCAGCA ATTGACCTGGCCTGGTCTC ] [+] EMBL BI799133 [ cggt cGTC AA GATA TCA GCTTCAGTTAAATGGCTCAA GCAAATGGATCACCCCAAGTTGTTGTTACTGGATA TCCATGGGAGG CGCCTTTGTCAATCGCAAGTGGAGTTTCAGTCCCAGAGGTTGAT GCTGTTGTG GCTTTCTATGGGACACCACCT TCTGAGCTTGCCGATGCTTCCAAGGCCCAGGCTCCCATCCAGGCTCATTTTGGGGAGCTTGACAGTTTTGTTGGATTTGCAGATGTCA CGGCAGCCA AGTCG CTGGAGGA G AAGCTCAA GTCATCTGGCGTGCCACATG AAGTCCACATCTA CCCTGGCTGC TCGCA TGCTTTTAT GAACACA TCA CCTGAGG CCGTCA AGAGGA GGAAGGAGATGGGTCTGACTGATGAGAACCAGGCAGC ATTGACCTGGCCTGGTCTCGCTTCTCGACTTGGATGGGTCGTTTCCTTGGATCGGCGTGAGCCAT TTACGCATATATGTTGTCAACCTGTCAGGTTGTATGAATAAAATCATTCAGGCCAGATGCAGAGTAATTAAGTATACCC AACC AATAATTGTGCTGTGTT GGACTATGTGAACATGCCATGCTTTGGTTTGCGAATTAaaaaaa ] [+] EMBL BI798311 [ TGGTAGGCCG CTTTGTCAA TGCAAGTGGAGTTCAAGTCCCAGAGGTTGATGCGCTGTTGTGCGCTTTCTATGGGACACCCCCTGTCTGAGCTTCCCGATGCTTCCAAGGCCCAGGCTCCCATCCAGGCTCATTTTGGGGAGCTTGACAGTTTTGTTGGATTTGCAGATGTCA C GCA CCA A TCG CTGGAGGA G AAGCTCAA GTCATCTGGCGTGCCACATG AAGTCCACATCTACCCCTGGCTGC TCGCA TGCTTTTAT GAACACA TCA CCTGAGG CCGTCA AGAGGA GGAAGGAGATGGGTCTGACTGATGAGAACCAGGCAGCA ATTGACCTGGCCTGGTCTCGCTTCTCGACTTGGATGGGTCGTTTCCTTGGATCGGCGTGA CCAT TTACGCATATATGTTGTCAACCTGTCAGGTTGTATGAATAAAATCATTCA GCCAGAT CAGAGTAATTAAGTATACCC AACC AATAATTGTCCTGT TT GGACTATGTGAACAT CCAT CTTT GTTTCCGAAaaaaaaaa ] [+] EMBL BI795597 [ CCAGA GTTGAT CT TTGTG GCTTTCTATGGGACACCACCT TCTGAGCTTGCCGATGCTTCCAAGGCCCAGGCTCCCATCCAGGCTCATTTTGGGGAGCTTGACAGTTTTGTTGGATTTGCAGATGTCACCGGCAGCCACAGTCGCCTGGAGGACGAAAGCTCAAAGGTCATCTGGCGTGCCACATGAAAGTCCACATCTACCCCTGGCTGCTTCGCACTTGCTTTTATGGAACACACTCACCCCCTGAGGCCCGTCACAGAGGAGGGAAGGAGATGGGTCTGACTGATGAGAACCAGGCAGCACATTGACCTGGCCTGGTCTCGCTTCTCGACTTGGATGGGTCGTTTCCTTGGATCGGCGTGAGCCAT TTACGCATATATGTTGTCAACCTGTCAGGTTGTATGAATAAAATCATTCAGGCCAGATGCAGAGTAATTAAGTATACCCCAACC AATAATTGTGCTGTGTT GGACTATGTGAACATGCCATGCTTTGGTTTGCGAATTATCTGTGG TTTTACTGTGC TTTCG AGATTGCAAAAAAAAAA ] [+] EMBL OSS12604A [ CATCTGGCGTGCCACATG AAGTCCACATCTA CCCTGGCTGC TCGCA TGCTTTTAT GAACACA TCA CCTGAGG CCGTCA AGAGGA GGAAGGAGATGGGTCTGACTGATGAGAACCAGGCAGCA ATTGACCTGGCCTGGTCTCGCTTCTCGACTTGGATGGGTCGTTTCCTTGGATCGGCGTGAG CATNTTACGCATATATGTTGTCAACCTGTCAGGTTGTATGAATAAAATCATTCAGGCCAGATGCAGAGTAATTAAGTATACCCAAACCAAATAATTGTGCTGTGTTGGGACTATGTGAACATGCCATGCTTTGGTTTTCGGATTATCTGTGGGTTTTTACTGTGCTTTTCGNGGATTTCATAAAAAAAAaa] consensusID : consensus_15912#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 697 fasta sequence [TGTCCNCATTTCCCAAATTGGTGAAGGATACAGAGCTCTCATTCCAGATTTGTATCGTGGTAA-GTTGCTCTTGATGTANCGGAAGCTCAGCATCTGATGGAAGGTCTAGACTGGCCGGGTGCGGTCAAGGATATTCAGGCTTCAGTTAAATGGCTCAAGG-CAAATGGATCACCCAAGGTTGGTGTTACTGGATATTGCATGGGAGGCGCTTTGTCAATTGCAAGTGGAGTTTCAGTCCCAGAGGTTGATGCTGTTGTGGC-TTTCTATGGGACACCACCTTCTGAGCTTGCCGATGCTTC-CAAGGCCCAGGCTCCCATCCAGGCTCATTTTGGGGAGCTTGACAGTTTTGTTGGATTTGCAGATGTCACGGCAGCCAAGTCGCTGGAGGAGAAGCTCAAGTCATCTGGCGTGCCACATGAAGTCCACATCTACCCTGGCTGCTCGCATGCTTTTATGAACACATCACCTGAGGCCGTCAAGAGGAGGAAGGAGATGGGTCTGACTGATGAGAACCAGGCAGCAATTGACCTGGCCTGGTCTCGCTTCTCGACTTGGATGGGTCGTTTCCTTGGATCGGCGTGAGCCATTTACGCATATATGTTGTCAACCTGTCAGGTTGTATGAATAAAATCATTCAGGCCAGATG-CAGAGTAATTAAGTATACCCAAACCAAATAATTGTGCTGAAAAAAAAAAAA] [+] EMBL AU096244 [TGTCCNCATTTCCCAAATTGGTGAAGGATACAGAGCTCTCATTCCAGATTTGTATCGTGGTAA GTTGCTCTTGATGTANCGGAAGCTCAGCATCTGATGGAAGGTCTAGACTGGCCGGGTGCGGTCAAGGATATTCAGGCTTCAGTTAAATGGCTCAAGG CAAATGGATCACCCAAGGTTGGTGTTACTGGATATTGCATGGGAGGCGCTTTGTCAATTGCAAGTGGAGTTTCAGTCCCAGAGGTTGATGCTGTTGTGGC TTTCTATGGGACACCACCTTCTGAGCTTGCCGATGCTTC CAAGGCCCAGGCTCCCATCCAGGCTCATTTTGGGGAGCTTGACAGTTTTGTTGGATTTGCAGATGTCACGGCAGCCAAGTCGCTGGAGGAGAAGCTCAAGTCATCTGGCGTGCCACATGAAGTCCACATCTACCCTGGCTGCTCGCATGCTTTTATGAACACATCACCTGAGGCCGTCAAGAGGAGGAAGGAGATGGGTCTGACTGATGAGAACCAGGCAGCAATTGACCTGGCCTGGTCTCGCTTCTCGACTTGGATGGGTCGTTTCCTTGGATCGGCGTGAGCCATTTACGCATATATGTTGTCAACCTGTCAGGTTGTATGAATAAAATCATTCAGGCCAGATG CAGAGTAATTAAGTATACCCAAACCAAATAATTGTGCTGAAAAAAAAAAAA] [+] EMBL AU162926 [ CCCAAATTGGTGAAGGATACAGAGCTCTCATNCCAGATTTGTATCGTGGTAAGGTTGCTCTTGATGTANCGGAAGCTCAGCATCTGATGGAAGGTCTAGACTGGCCGGGTGCGGTCAAGGATATTCAGGCTTCAGTTAAATGGCTCAAGGCCAAATGGATCACCCAAGGTTGGTGTTACTGGATATTGCATGGGAGGCGCTTTGTCAATTGCAAGTGGAGTTTCAGTCCCAGAGGTTGATGCTGTTGTGGC TTTCTATGGGACACCACCTTCTGAGCTTGCCGATGCTTC CAAGGCCCAGGCTCCCATCCAGGCTCATTTTGGGGAGCTTGACAGTTTTGTTGGATTTGCAGATGTCACGGCAGCCAAGTCGCTGGAGGAGAAGCTCAAGTCATCTGGCGTGCCACATGAAGTCCACATCTACCCTGGCTGCTCGCATGCTTTTATGAACACATCACCTGAGGCCGTCAAGAGGAGGAAGGAGATGGGTCTGACTGATGAGAACCAGGCAGCAATTGACCTGGCCTGGTCTCGCTTCTCGACTTGGATGGGTCGTTTCCTTGGATCGGCGTGAGCCATTTANGCATATATGTTGTCAACCTGTCAGGTTGTATGAATAAAATCATTCAGGCCAGATG CAGAGTAATTAAGTATACCCAAACCAAATAATTGTGCTGAAAAAAAAAAAA] [+] EMBL AU096380 [ TATTCAGGCTTCAGTTAAATGGCTCAAGG CAAATGGATCACCCAAGGTTGGTGTTACTGGATATTGCATGGGAGGCGCTTTGTCAATTGCAAGTGGAGTTTCAGTCCCAGAGGTTGATGCTGTTGTGGC TTTCTATGGGACACCACCTTCTGAGCTTGCCGATGCTTC CAAGGCCCAGGCTCCCATCCAGGCTCATTTTGGGGAGCTTGACAGTTTTGTTGGATTTGCAGATGTCACGGCAGCCAAGTCGCTGGAGGAGAAGCTCAAGTCATCTGGCGTGCCACATGAAGTCCACATCTACCCTGGCTGCTCGCATGCTTTTATGAACACATCACCTGAGGCCGTCAAGAGGAGGAAGGAGATGGGTCTGACTGATGAGAACCAGGCAGCAATTGACCTGGCCTGGTCTCGCTTCTCGACTTGGATGGGTCGTTTCCTTGGATCGGCGTGAGCCATTTACGCATATATGTTGTCAACCTGTCAGGTTGTATGAATAAAATCATTCAGGCCAGATG CAGAGTAATTAAGTATACCCAAACCAAATAATTGTGCTGAAAAAAAAAAAA] [+] EMBL BI805812 [ TGAT CTGTTGTGGCTTTTCTATGGGACACCACCTTCTGAGC TGCCGATGCTTCGCAAGGCCCAGGCTCCCATCCAGGCTCATTTTGGGGAGCTTGACA TTTT TTGGATTTGCAGATGTCACGGCAGCCAAGTCGCTGGAGGAGAAGCTCAAGTCATCTGGCGTGCCACATGAAGTCCACATCTA CCTGGCTGCTCGCATGCTTTTATGAACACATCACCTGA GCCGTCAAGAGGAGGAAGGAGATGGGTCTGACTGATGAGAACCAGGCAGCAATTGACCTGGCCTGGTCTCGCTTCTCGACTTGGATGGGTCGTTTCCTTGGATCGGCGTGAGCCATTTACGCATATATGTTGTCAACCTGTCA GTTGTATGAATAAAATCATTCAGGCCAGATGCCAGAGTAATTAAGTATACCC AACCA ] consensusID : consensus_15912#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 479 fasta sequence [CACCACCTTCTGAGCTTCCGATGCTTCCAAGGCCCAGGCTCCCATCAGGCTCATTTTGGGGAGCTTGACACGTTTTGTTGGATTTGCAGATGTCACGGCAGCCAA-TCGCTGGAGGAGAAGCTCAAGTCATCTGGCGTGCCACATGAAGTCCACATCTACCCTGGCTGCTCGCATGCTTTTATGAACACATCACCTGAGGCCGTCAAGAGGAGGAAGGAGATGGGTCTGACTGATGAGAACCAGGCAGCAATTGACCTGGCCTGGTCTCGCTTCTCGACTTGGATGGGTCGTTTCCTTGGATCGGCGTGAGCCATTTACGCATATATGTTGTCAACCTGTCAGGTTGTATGAATAAAATCATTCAGGCCAGATGCAGAGTAATTAAGTATACCCAAACCAAATAATTGTGCTGTGTTGGACTATGTGAACATGCCATGCTTTGGTTTGCGAATTTAAAAAAAAAAACTGTCATGCCGTTA] [+] EMBL BI808521 [CACCACCTTCTGAGCTTCCGATGCTTCCAAGGCCCAGGCTCCCATCAGGCTCATTTTGGGGAGCTTGACACGTTTTGTTGGATTTGCAGATGTCACGGCAGCCAA TCGCTGGAGGAGAAGCTCAAGTCATCTGGCGTGCCACATGAAGTCCACATCTACCCTGGCTGCTCGCATGCTTTTATGAACACATCACCTGAGGCCGTCAAGAGGAGGAAGGAGATGGGTCTGACTGATGAGAACCAGGCAGCAATTGACCTGGCCTGGTCTCGCTTCTCGACTTGGATGGGTCGTTTCCTTGGATCGGCGTGAGCCATTTACGCATATATGTTGTCAACCTGTCAGGTTGTATGAATAAAATCATTCAGGCCAGATGCAGAGTAATTAAGTATACCCAAACCAAATAATTGTGCTGTGTTGGACTATGTGAACATGCCATGCTTTGGTTTGCGAATTTAAAAAAAAAA ] [-] EMBL CF293123 [ AGCTTGACA GTTTTGTTGGATTTGCAGATGTCACGGCAGCCAAGTCGCTGGAGGAGAAGCTCAAGTCATCTGGCGTGCCACATGAAGTCCACATCTACCCTGGCTGCTCGCATGCTTTTATGAACACATCACCTGGGGCCGTCAAGAGGAGGAAGGAGATGGGTTTGACTGATGAGAACCAGGCAGCAATTGACCTGGCCTGGTCTCGCTTCTCGACTTGGATGGGTCGTTTCCTTGGATCGGCGTGAGCCATTTACGCATATATGTTGTCAACCTGTCAGGTTGTATGAATAAAATCATTCAGGCCAGATGCAGAGTAATTAAGTATACCCAAACCAAATAATTGTGCTGTGTTGGACTATGTGAACAAGCCATGCTTTGGTTTGCGAAAAAAAAAAAAAACACTGTCATGCCGTTA] consensusID : consensus_15912#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 386 fasta sequence [ANTCGCTGGAGGAGAAGCTCAAGTCATNTGGCGTGCCACATGAAGTCCNCATCTACCCTGGCTGCTCGCATGCTTTTATGAACACATCNCCTGAGGCCGTCAAGAGGAGGAAGGAGATGGGTCTGNCTGATGAGAACCAGGCAGCAATTGACCTGGCCTGGTCTCGCTTCTCGACTTGGATGGGTCGTTTCCTTGGATCGGCGTGAGCCATTTACGCATATATGTTGTCAACCTGTCAGGTTGTATGAATAAAATCATTCAGGCCAGATGCAGAGTAATTAAGTATACCCAAACCAAATAATTGTGCTGTGTTGGACTATGTGAACATGCCATGCTTTGGTTTGCGAATTATCTGTGGTTTTACTGTGCAAAAAAAAAAAAAAAAA] [+] EMBL AU096172 [ANTCGCTGGAGGAGAAGCTCAAGTCATNTGGCGTGCCACATGAAGTCCNCATCTACCCTGGCTGCTCGCATGCTTTTATGAACACATCNCCTGAGGCCGTCAAGAGGAGGAAGGAGATGGGTCTGNCTGATGAGAACCAGGCAGCAATTGACCTGGCCTGGTCTCGCTTCTCGACTTGGATGGGTCGTTTCCTTGGATCGGCGTGAGCCATTTACGCATATATGTTGTCAACCTGTCAGGTTGTATGAATAAAATCATTCAGGCCAGATGCAGAGTAATTAAGTATACCCAAACCAAATAATTGTGCTGTGTTGGACTATGTGAACATGCCATGCTTTGGTTTGCGAATTATCTGTGGTTTTACTGTGCAAAAAAAAAAAAAAAAA] [+] EMBL AU197930 [ CAGCAATTGACCTGGCCTGGTCTCGCTTNTCGACTTGGATGGGTCGTTTCCTTGGATCGGCGTGAGCCATTTACGCATATATGTTGTCAACCTGTCAGGTTGTATGAATAAAATCATTCAGGCCAGATGCAGAGTAATTAAGTATACCCAAACCAAATAATTGTGCTGTGTTGGACTATGTGAACATGCCATGCTTTGGTTTGCGAATTATCTGTGGTTTTACTGTGCAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15912#2 ------------------------------------------------------------ consensus_15912#3 ------------------------------------------------------------ consensus_15912#0 CTGCTGCTTGGGATTTGATTAGTTGTGTTGAGAGATGGCCACACCGCAACTGCTGCTACG 60 consensus_15912#1 ------------------------------------------------------------ consensus_15912#2 ------------------------------------------------------------ consensus_15912#3 ------------------------------------------------------------ consensus_15912#0 CCGCGCCTTCTCCTCCTCCTTCCTCTCCTCCCCATTCCGCCGCCCGCCACTCCACCCCGC 120 consensus_15912#1 ------------------------------------------------------------ consensus_15912#2 ------------------------------------------------------------ consensus_15912#3 ------------------------------------------------------------ consensus_15912#0 CCGCTCCTTCGTTCCCCCCCGCGCCGCCATGGCATCCTCCGCCGCGCCGTTCCACATGGT 180 consensus_15912#1 ------------------------------------------------------------ consensus_15912#2 ------------------------------------------------------------ consensus_15912#3 ------------------------------------------------------------ consensus_15912#0 CCAGATCCAGCGCGACGACACGACTTTTGATGCCTATGTTGTTGGAAAAGAGAATGCTCC 240 consensus_15912#1 ------------------------------------------------------------ consensus_15912#2 ------------------------------------------------------------ consensus_15912#3 ------------------------------------------------------------ consensus_15912#0 TGGAATTGTTGTTTTGCAAGAGTGGTGGGGGGTTGACTATGAGATCAAGAATCATGCTGT 300 consensus_15912#1 ---------------------------------------------------------TGT 3 consensus_15912#2 ------------------------------------------------------------ consensus_15912#3 ------------------------------------------------------------ consensus_15912#0 CCACATTTCCCAAATTGGTGAAGGATACAGAGCTCTCATTCCAGATTTGTATCGTGGTAA 360 consensus_15912#1 CCNCATTTCCCAAATTGGTGAAGGATACAGAGCTCTCATTCCAGATTTGTATCGTGGTAA 63 consensus_15912#2 ------------------------------------------------------------ consensus_15912#3 ------------------------------------------------------------ consensus_15912#0 GGTTGCTCTTGATGTAGCGGAAGCTCAGCATCTGATGGAAGGTCTAGACTGGCCGGGTGC 420 consensus_15912#1 G-TTGCTCTTGATGTANCGGAAGCTCAGCATCTGATGGAAGGTCTAGACTGGCCGGGTGC 122 consensus_15912#2 ------------------------------------------------------------ consensus_15912#3 ------------------------------------------------------------ consensus_15912#0 GGTCAAGGATATTCAGGCTTCAGTTAAATGGCTCAAGGCAAATGGATCACCCAAGGTTGG 480 consensus_15912#1 GGTCAAGGATATTCAGGCTTCAGTTAAATGGCTCAAGGCAAATGGATCACCCAAGGTTGG 182 consensus_15912#2 ------------------------------------------------------------ consensus_15912#3 ------------------------------------------------------------ consensus_15912#0 TGTTACTGGATATTGCATGGGAGGCGCTTTGTCAATTGCAAGTGGAGTTTCAGTCCCAGA 540 consensus_15912#1 TGTTACTGGATATTGCATGGGAGGCGCTTTGTCAATTGCAAGTGGAGTTTCAGTCCCAGA 242 consensus_15912#2 -----------------------------CACCACCTTCTGAGCTT-CCGATGCTTCCAA 30 consensus_15912#3 ------------------------------------------------------------ consensus_15912#0 GGTTGATGCTGTTGTGGCTTTCTATGGGACACCACCTTCTGAGCTTGCCGATGCTTCCAA 600 consensus_15912#1 GGTTGATGCTGTTGTGGCTTTCTATGGGACACCACCTTCTGAGCTTGCCGATGCTTCCAA 302 consensus_15912#2 GGCCCAGGCTCCCATCAGGCTCATTTTGGGGAGCTTGACACGTTTTGTTGGATTTGCAGA 90 consensus_15912#3 ------------------------------------------------------------ consensus_15912#0 GGCCCAGGCTCCCATCCAGGCTCATTTTGGGGAGCTTGACAGTTTTGTTGGATTTGCAGA 660 consensus_15912#1 GGCCCAGGCTCCCATCCAGGCTCATTTTGGGGAGCTTGACAGTTTTGTTGGATTTGCAGA 362 consensus_15912#2 TGTCACGGCAGCCAA-TCGCTGGAGGAGAAGCTCAAGTCATCTGGCGTGCCACATGAAGT 149 consensus_15912#3 -------------AN-TCGCTGGAGGAGAAGCTCAAGTCATNTGGCGTGCCACATGAAGT 46 consensus_15912#0 TGTCACGGCAGCCAAGTCGCTGGAGGAGAAGCTCAAGTCATCTGGCGTGCCACATGAAGT 720 consensus_15912#1 TGTCACGGCAGCCAAGTCGCTGGAGGAGAAGCTCAAGTCATCTGGCGTGCCACATGAAGT 422 * ************************* ****************** consensus_15912#2 CCACATCTACCCTGGCTGCTCGCATGCTTTTATGAACACATCACCTGAGGCCGTCAAGAG 209 consensus_15912#3 CCNCATCTACCCTGGCTGCTCGCATGCTTTTATGAACACATCNCCTGAGGCCGTCAAGAG 106 consensus_15912#0 CCACATCTACCCTGGCTGCTCGCATGCTTTTATGAACACATCACCTGAGGCCGTCAAGAG 780 consensus_15912#1 CCACATCTACCCTGGCTGCTCGCATGCTTTTATGAACACATCACCTGAGGCCGTCAAGAG 482 ** *************************************** ***************** consensus_15912#2 GAGGAAGGAGATGGGTCTGACTGATGAGAACCAGGCAGCAATTGACCTGGCCTGGTCTCG 269 consensus_15912#3 GAGGAAGGAGATGGGTCTGNCTGATGAGAACCAGGCAGCAATTGACCTGGCCTGGTCTCG 166 consensus_15912#0 GAGGAAGGAGATGGGTCTGACTGATGAGAACCAGGCAGCAATTGACCTGGCCTGGTCTCG 840 consensus_15912#1 GAGGAAGGAGATGGGTCTGACTGATGAGAACCAGGCAGCAATTGACCTGGCCTGGTCTCG 542 ******************* **************************************** consensus_15912#2 CTTCTCGACTTGGATGGGTCGTTTCCTTGGATCGGCGTGAGCCATTTACGCATATATGTT 329 consensus_15912#3 CTTCTCGACTTGGATGGGTCGTTTCCTTGGATCGGCGTGAGCCATTTACGCATATATGTT 226 consensus_15912#0 CTTCTCGACTTGGATGGGTCGTTTCCTTGGATCGGCGTGAGCCATTTACGCATATATGTT 900 consensus_15912#1 CTTCTCGACTTGGATGGGTCGTTTCCTTGGATCGGCGTGAGCCATTTACGCATATATGTT 602 ************************************************************ consensus_15912#2 GTCAACCTGTCAGGTTGTATGAATAAAATCATTCAGGCCAGATGCAGAGTAATTAAGTAT 389 consensus_15912#3 GTCAACCTGTCAGGTTGTATGAATAAAATCATTCAGGCCAGATGCAGAGTAATTAAGTAT 286 consensus_15912#0 GTCAACCTGTCAGGTTGTATGAATAAAATCATTCAGGCCAGATGCAGAGTAATTAAGTAT 960 consensus_15912#1 GTCAACCTGTCAGGTTGTATGAATAAAATCATTCAGGCCAGATGCAGAGTAATTAAGTAT 662 ************************************************************ consensus_15912#2 ACCCAAACCAAATAATTGTGCTGTGTTGGACTATGTGAACATGCCATGCTTTGGTTTGCG 449 consensus_15912#3 ACCCAAACCAAATAATTGTGCTGTGTTGGACTATGTGAACATGCCATGCTTTGGTTTGCG 346 consensus_15912#0 ACCCAAACCAAATAATTGTGCTGTGTTGGACTATGTGAACATGCCATGCTTTGGTTTGCG 1020 consensus_15912#1 ACCCAAACCAAATAATTGTGCTGAAAAAAAAAAAA------------------------- 697 *********************** * * consensus_15912#2 AATTTAAAAAAAAAAACTGTCATGCCGTTA----------------- 479 consensus_15912#3 AATT--ATCTGTGGTTTTACTGTGCAAAAAAAAAAAAAAAAA----- 386 consensus_15912#0 AATTATCTGTGGTTTTACTGTGCTTTCGAGATTGCATAAAAAAAATG 1067 consensus_15912#1 ----------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||