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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15912#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 18 consensus length = 1067 fasta sequence
[CTGCTGCTTGGGATTTGATTAGTTGTGTTGAGAGATGGCCACACCGCAACTGCTGCTACGCCGCGCCTTCTCCTCCTCCTTCCTCTC-CTCCCCATTCCGCCG-CCCGCCACTCCACCCCGCCCGCTCCTTCGTTCCCCCCCGCGCCGCCATGGCATCCTCCGCCGCGCCGTTCCACATGGTCCAGATCCAGCGCGACGACACGACTTTTGATGCCTATGTTGTTGGAAAAGAGAATGCTCCTGGAATTGTTGTTTTGCAAGAGTGGTGGGGGGTTGACTATGAGATCAAGAATCATGCTGTCCACATTTCCCAAATT-GGTGAAGGATACAGAGCTCTCATTCCAGATTTGTATCGTGGTAAGGTTGCTCTTGATGTAGCGGAAGCTC-AGCATC-TGATGGAAGGTCTAGAC-TGGCCGGGTGC-GGTC-AAGGATA-TTCAGGCTTCAGTTAAATGGCTCAAGGCAAATGGATCACCCAAGGTTGGTGTTACTGGATATTGCATGGGAGG-CG-CTTTGTCAATTGCAAGTGGAGTTTCAGTCCCAGAGGTTGAT--GCTGTTGTG-GCTTTCTATGGGACACCACCT-TCTGAGCTTGCCGATGCTTCCAAGGCCCAGGCTCCCATCCAGGCTCATTTTGGGGAGCTTGACAGTTTTGTTGGATTTGCAGATGTCA-CGGCAGCCA-AGTCG-CTGGAGGA-G-AAGCTCAA--GTCATCTGGCGTGCCACATG-AAGTCCACATCTA-CCCTGGCTGC-TCGCA--TGCTTTTAT-GAACACA-TCA---CCTGAGG-CCGTCA-AGAGGA-GGAAGGAGATGGGTCTGACTGATGAGAACCAGGCAGCA-ATTGACCTGGCCTGGTCTCGCTTCTCGACTTGGATGGGTCGTTTCCTTGGATCGGCGTGAGCCAT-TTACGCATATATGTTGTCAACCTGTCAGGTTGTATGAATAAAATCATTCAGGCCAGATGCAGAGTAATTAAGTATACCCAAACCAAATAATTGTGCTGTGTT-GGACTATGTGAACATGCCATGCTTTGGTTTGCGAATTATCTGTGG--TTTTACTGTGC-TTTCG-AGATTGCATAAAAAAAATG]
[+] EMBL AK106208 [CTGCTGCTTGGGATTTGATTAGTTGTGTTGAGAGATGGCCACACCGCAACTGCTGCTACGCCGCGCCTTCTCCTCCTCCTTCCTCTC CTCCCCATTCCGCCG CCCGCCACTCCACCCCGCCCGCTCCTTCGTTCCCCCCCGCGCCGCCATGGCATCCTCCGCCGCGCCGTTCCACATGGTCCAGATCCAGCGCGACGACACGACTTTTGATGCCTATGTTGTTGGAAAAGAGAATGCTCCTGGAATTGTTGTTTTGCAAGAGTGGTGGGGGGTTGACTATGAGATCAAGAATCATGCTGTCCACATTTCCCAAATT GGTGAAGGATACAGAGCTCTCATTCCAGATTTGTATCGTGGTAAGGTTGCTCTTGATGTAGCGGAAGCTC AGCATC TGATGGAAGGTCTAGAC TGGCCGGGTGC GGTC AAGGATA TTCAGGCTTCAGTTAAATGGCTCAAGGCAAATGGATCACCCAAGGTTGGTGTTACTGGATATTGCATGGGAGG CG CTTTGTCAATTGCAAGTGGAGTTTCAGTCCCAGAGGTTGAT GCTGTTGTG GCTTTCTATGGGACACCACCT TCTGAGCTTGCCGATGCTTCCAAGGCCCAGGCTCCCATCCAGGCTCATTTTGGGGAGCTTGACAGTTTTGTTGGATTTGCAGATGTCA CGGCAGCCA AGTCG CTGGAGGA G AAGCTCAA GTCATCTGGCGTGCCACATG AAGTCCACATCTA CCCTGGCTGC TCGCA TGCTTTTAT GAACACA TCA CCTGAGG CCGTCA AGAGGA GGAAGGAGATGGGTCTGACTGATGAGAACCAGGCAGCA ATTGACCTGGCCTGGTCTCGCTTCTCGACTTGGATGGGTCGTTTCCTTGGATCGGCGTGAGCCAT TTACGCATATATGTTGTCAACCTGTCAGGTTGTATGAATAAAATCATTCAGGCCAGATGCAGAGTAATTAAGTATACCCAAACCAAATAATTGTGCTGTGTT GGACTATGTGAACATGCCATGCTTTGGTTTGCGAATTATCTGTGG TTTTACTGTGC TTTCG AGATTGCATAtatattctg]
[+] EMBL OSS13177A [ TGAGAGATGGCCACACCGCAACTNCTGCTACGCCGCGCCTTCTCCTCCTCCTTCCTCTC CTCCCCATTCCGCCG CCCGCCACTCCACCCCGCCCGCTCCTTCGTTCCCCCCCGCGCCGCCATGGCATCCTCCGCCGCGCCGTTCCACATGGTCCAGATCCAGCGCGACGACACGACTTTTGATGCCTATNTTGTTGGAAAANAGAATGCTCCTGGAATTGTTGTTTTGCAAGAGTGGTGGGGGGTTGACTATAAGATCAAGAATCATGCTGTCCACATTTCCCAAATT GGTGAAGGATACAGAGCTCTCATTCCAGATTTGTATCGTGGTAAGGTTGCTCTTNATGTAGCGGAAG TCAAGCATC TGATGGAAGGTCTAGAC TTGCCGGGTGC GGTCAAAGGATATTTAAGGGTTAAGTAAAATGG GNAAGGGAAATGGnt ]
[+] EMBL OSS12930A [ GAGAGATGGCCACACCGCAACTGCTGCTACGCCGCGCCTTCTCCTCCTCCTTCCTCTC CTCCCCATTCCGCCG CCCGNCACTCCACCCCGCCCGCTCCTTCGTTCCCCCCCGCGCCGCCATGGCATCCTCCGCCGCGCCGTTCCACATGGTCCAGATCCAGCGCGACGACACGACTTTTGATGCCTATGTTGTTGGAAAAGAGAATGCTCCTGGAATTGTTGTTTTGCAAGAGTGGTGGGGGGTTGACTATGAGATCAAGAATCATGNTGTCCACATTTCCCAAATTGGGTGA ]
[+] EMBL AU096379 [ GAGAGATGGCCACACCGCAACTGCTGCTACGCCGCGCCTTCTCCTCCTCCTTCCTCTCNNACCCCATTCNGCNGACCCGCCACTCCACCCCGCCCGNTCCTTCGTTCCCCCCCGCGCCGCCATGGCATCCTCCGCCGCGCCGTTCCACATGGTCCAGATCCAGCGCGACGACANGACTTTTGATGCCTA GTTGTTGGAAAAGAGAATGCTCCTGGAATTGTTGTTTTGCAAGAGTGGTGGGGGGTTGACTATGAGATCAAGAATCATGCTGTCCACATTTCCCAAATT GGTGAAGGATACAGAGCTCTCATTCCAGATTTGTATC ]
[+] EMBL AK059992 [ GCTACGCCGCGCCTTCTCCTCCTCCTTCCTCTC CTCCCCATTCCGCCG CCCGCCACTCCACCCCGCCCGCTCCTTCGTTCCCCCCCGCGCCGCCATGGCATCCTCCGCCGCGCCGTTCCACATGGTCCAGATCCAGCGCGACGACACGACTTTTGATGCCTATGTTGTTGGAAAAGAGAATGCTCCTGGAATTGTTGTTTTGCAAGAGTGGTGGGGGGTTGACTATGAGATCAAGAATCATGCTGTCCACATTTCCCAAATT GGTGAAGGATACAGAGCTCTCATTCCAGATTTGTATCGTGGTAAGGTTGCTCTTGATGTAGCGGAAGCTC AGCATC TGATGGAAGGTCTAGAC TGGCCGGGTGC GGTC AAGGATA TTCAGGCTTCAGTTAAATGGCTCAAGGCAAATGGATCACCCAAGGTTGGTGTTACTGGATATTGCATGGGAGG CG CTTTGTCAATTGCAAGTGGAGTTTCAGTCCCAGAGGTTGAT GCTGTTGTG GCTTTCTATGGGACACCACCT TCTGAGCTTGCCGATGCTTCCAAGGCCCAGGCTCCCATCCAGGCTCATTTTGGGGAGCTTGACAGTTTTGTTGGATTTGCAGATGTCA CGGCAGCCA AGTCG CTGGAGGA G AAGCTCAA GTCATCTGGCGTGCCACATG AAGTCCACATCTA CCCTGGCTGC TCGCA TGCTTTTAT GAACACA TCA CCTGAGG CCGTCA AGAGGA GGAAGGAGATGGGTCTGACTGATGAGAACCAGGCAGCA ATTGACCTGGCCTGGTCTCGCTTCTCGACTTGGATGGGTCGTTTCCTTGGATCGGCGTGAGCCAT TTACGCATATATGTTGTCAACCTGTCAGGTTGTATGAATAAAATCATTCAGGCCAGATGCAGAGTAATTAAGTATACCCAAACCAAATAATTGTGCTGTGTT GGACTATGTGAACATGCCATGCTTTGGTTTGCGAATTATCTGTGG TTTTACTGTGC TTTCG A ]
[+] EMBL CF293122 [ CTACGCCGCGCCTTCTCCTCCTCCTTCCTCTC CTCCCCATTCCGCCG CCCGCCACTCCACCCCGCCCGCTCCTTCGTTCCCCCCCGCGCCGCCATGGCATCCTCCGCCGCGCCGTTCCACATGGTCCAGATCCAGCGCGACGACACGACTTTTGATGCCTATGTTGTTGGAAAAGAGAATGCTCCTGGAATTGTTGTTTTGCAAGAGTGGTGGGGGGTTGACTATGAGATCAAGAATCATGCTGTCCACATTTCCCAAATT GGTGAAGGATACAGAGCTCTCATTCCAGATTTGTATCGTGGTAAGGTTGCTCTTGATGTAGCGGAAGCTC AGCATC TGATGGAAGGTCTAGAC TGGCCGGGTGC GGTC AAGGATA TTCAGGCTTCAGTTAAATGGCTCAAGGCAAATGGATCACCCAAGGTTGGTGTTACTGGATATTGCATGGGAGG CG CTTTGTCAATTGCAAGTGGAGTTTCAGTCCCAGAGGTTGAT GCTGTTGTG GCTTTCTATGGGACACCACCT TCTGAGCTTGCCGATGCTTCCAAGGCCCAGGCTCCCAT ]
[+] EMBL AK104379 [ TACGCCGCGCCTTCTCCTCCTCCTTCCTCTC CTCCCCATTCCGCCG CCCGCCACTCCACCCCGCCCGCTCCTTCGTTCCCCCCCGCGCCGCCATGGCATCCTCCGCCGCGCCGTTCCACATGGTCCAGATCCAGCGCGACGACACGACTTTTGATGCCTATGTTGTTGGAAAAGAGAATGCTCCTGGAATTGTTGTTTTGCAAGAGTGGTGGGGGGTTGACTATGAGATCAAGAATCATGCTGTCCACATTTCCCAAATT GGTGAAGGATACAGAGCTCTCATTCCAGATTTGTATCGTGGTAAGGTTGCTCTTGATGTAGCGGAAGCTC AGCATC TGATGGAAGGTCTAGAC TGGCCGGGTGC GGTC AAGGATA TTCAGGCTTCAGTTAAATGGCTCAAGGCAAATGGATCACCCAAGGTTGGTGTTACTGGATATTGCATGGGAGG CG CTTTGTCAATTGCAAGTGGAGTTTCAGTCCCAGAGGTTGAT GCTGTTGTG GCTTTCTATGGGACACCACCT TCTGAGCTTGCCGATGCTTCCAAGGCCCAGGCTCCCATCCAGGCTCATTTTGGGGAGCTTGACAGTTTTGTTGGATTTGCAGATGTCA CGGCAGCCA AGTCG CTGGAGGA G AAGCTCAA GTCATCTGGCGTGCCACATG AAGTCCACATCTA CCCTGGCTGC TCGCA TGCTTTTAT GAACACA TCA CCTGAGG CCGTCA AGAGGA GGAAGGAGATGGGTCTGACTGATGAGAACCAGGCAGCA ATTGACCTGGCCTGGTCTCGCTTCTCGACTTGGATGGGTCGTTTCCTTGGATCGGCGTGAGCCAT TTACGCATATATGTTGTCAACCTGTCAGGTTGTATGAATAAAATCATTCAGGCCAGATGCAGAGTAATTAAGTATACCCAAACCAAATAATTGTGCTGTGTT GGACTATGTGAACATGCCATGCTTTGGTTTGCGAATTATCTGTGG TTTTACTGTGC TTTC ]
[+] EMBL OSS12345A [ CTCCTCCTTCCTCTC CTCCCCATTCCGCCG NCCGCCACTCCACCCCGNCCGCTCCTTCGTTCCCCCCCGCGCCGCCATGGCATCCTCCGNCGCGCCGTTCCACATGGTCCAGATCCAGCGCGACGACACGACTTTTGATGCCTATGTTGTTGGAAAAGAGAATGCTCCTGGAATTGTTGTTTTGCAAGAGTGGTGGGGGGTTGACTATGAGATCAAGAATCATGCTGTCCACATTTCCCAAATT GGTGAAGGATACAGAGCTCTCATTNCAGATTTGTATCGTGGTAAGGTTGCTCTTGATGTAGCGGAAG TC AGCATC TGATGGAAGGTCTAGAC TGGCCGNGTGC GGTC AAGGATA TTCAGG TTCANTTAAATGGTTCAAGGAAAATGGATCA CCNAGGTTGGTGGTACT GATAnt ]
[+] EMBL OSS13253A [ TCCTCCTTCCTCTC CTCCCCATTCCGCCG CCCGCCACTCCACCCCGCCCGCTCCTTCGTTCCCCCCCGCGCCGCCATGGCATCCTCCGCCGCGCCGTTCCACATGGTCCAGATCCAGCGCGACGACACGACTTTTGATGCCTATGTTGTTGGAAAAGAGAATGCTCCTGGAATTGTTGTTTTGCAAGAGTGGTGGGGGGTTGACTATGAGATCAAGAATCATGCTGTCCACATTTCCCAAATT GGTGAAGGATACAGAGCTCTCATTCCAGATTTGTATCGTGGTAAGGTTGCTCTTGATGTAGCGGAAG TC AGCATC TGATGGAAGGTCTAGACTTGGCCGGGTGCGGGTC AAGGATA TTCAGGCTTCAGTTAAATGGCTCAAGGCAAATGG TCANCCAAGGTTGGTG TACTGG TATT CATGGGAGG G GTTTTTCAATTGCAAGTGG G TTCAGTC ]
[+] EMBL OSS13552A [ CTTNCTCTC CTCCCCATTCCGCCG CCCGNNACTNCACCCCGCCCGNTCCTTCGTTCCCCCCCGNNNCGNCATGGCATCCTCCGNCGCGCCGTTCCACATGGTCCAGATCCAGCGCGACGACACGACTTTTGATGCCTATGTTGTTGGAAAAGAGAATGCTCCTGGAATTGTTGTTTTGCAAGAGTGGTGGGGGGTTGACTATGAGATCAAGAATCATGCTGTCCACATTTNCCAAATT GGTGAAGGATACAGAGCTCTCATTCCAGATTTGTATCGTGGTAAGGTTGNTCTTGATGTAGC GAAG TC AGCATC TGATGG AGGTCTAGAC TGGCCGGGTG NGTC AAGGATA TTCAGG TTCAGTTAAATGGCTC AGGAAAATGGATCACCC AGGNTGGTGTT CTGGATATTGCATGGGAGG CG TTTTG CNATTGCAAGT ]
[+] EMBL CB681268 [ CTTCCCCTC TTCCCCATTCCGCCG CCCGCGACTCCACCCCGCCCGCTCCTTCGTTCCCCCCCGCGCCGCCATGGAATCCTCCGCCGCGCCGTTCCACATGGTCCAGATCCAGCGCGACGACACGACTTTTGATGCCTATGATGTTGGAAAAGAGAATGCTCCTGGAATTGTTGTTTTGCAAGAGTGGTGGGGGGTTGACTATGAGATCAAAAATCATGCTGTCCACATTTCCCAAATT GGTGAAGGATACAGAGCTCTCATTCCAGATTTGTATCGTGGTAAGGTTGCTCTTGATGTAGCGGAAGCTC AACATC TGATGGAAGGTCTACAC TGGCCGGGTGC GGTC AAGGATA TTCAAGCTTCAGTTAAATGGCTCAAGGCAAATGGATCACCCAAGGGTGGTGTTACTGGATATTGCATGGGAGG CG CTTTGTCAATTGCAAGTGGAGTTTCAGTCCCAGAGGTTGAT GCTGTTGTG GCTTTCTATGGGACACCACCT TCTGAGCTTGCCGATGCTTCCAAGGCCCATGCTCCCATCCAGGCTCATTTTGGGGAGCTTGACAGTTTTGTTGGATTTGCAGATGTCA CGGCAGCCA AGTCA CTGGAGGA G AAGCTCAA GTCATCTGGCGTGCCACATG AAGTCCACATCTA CCCTGGCTGC TCGCA TGCTTTTAT GAACACA TCA CCTGATG CCGTCA AGAGGA TGAAGGAGATGGGTCTGACTGATG ]
[+] EMBL BE230087 [ C CTCCCCATTCCGCCG CCCGCCACTCCACCCCGCCCGCTCCTTCGTTCCCCCCCGCGCCGCCATGGCATCCTCCGCCCCGCCGTTCCACATGGTCCAGATCCAGCGCGACGACACGACTTTTGATGCCTATGTTGTTGGAAAAGAGAATGCTCCTGGAATTGTTGTTTTGCAAGAGTGGTGGGGGGTTGACTATGAGATCAAGAATCATGCTGTCCACATTTCCCAAATT GGTGAAGGATACAGAGCTCTCATTCCAGATTTGTATCGNGGTAAGGTTGCTCTTGATGTAGCGGAAGCTC AGCATCTTGAT ]
[+] EMBL BE230243 [ C CTCCCCATTCCGCCG CCCGCCACTCCACCCCGCCCGCTCCTTCGTTCCCCCCCGCGCCGCCATGGCATCCTCCGCCCCGCCGTTCCACATGGTCCAGATCCAGCGCGACGACACGACTTTTGATGCCTATGTTGTTGGAAAAGAGAATGCTCCTGGAATTGTTGTTTTGCAAGAGTGGTGGGGGGTTGACTATGAGATCAAGAATCATGCTGTCCACATTTCCCAAATT GGTGAAGGATACAGAGCTCTCATTCCAGATTTGTATCGTGGTAAGGTTGCTCTTGATGTAGCGGAAGCTC AGCATC TGATGGAAGGTCTAGAC TGGCCGGGTGC GGTC AAGGATA TTCAGGCTTCAGTTAAATGGCTCAAGGCAAATGGATCACCCAAGGTTGGTG TACTGGATATTGCATGGGAGG CG CTTTGTCAATTGCAAGTGGAG ]
[+] EMBL CF323414 [ CAAATT GGTGAAGGATACAGAGCTCTCATTCCAGATTTGTATCGTGGTAAGGTTGCTCTTGATGTAGCGGAAGCTC AGCATC TGATGGAAGGTCTAGAC TGGCCGGGTGC GGTC AAGGATA TTCAGGCTTCAGTTAAATGGCTCAAGGCAAATGGATCACCCAAGGTTGGTGTTACTGGATATTGCATGGGAGG CG CTTTGTCAATTGCAAGTGGAGTTTCAGTCCCAGAGGTTGAT GCTGTTGTG GCTTTCTATGGGACACCACCT TCTGAGCTTGCCGATGCTTCCAAGGCCCAGGCTCCCATCCAGGCTCATTTTGGGGAGCTTGACAGTTTTGTTGGATTTGCAGATGTCA CGGCAGCCA AGTCG CTGGAGGA G AAGCTCAA GTCATCTGGCGTGCCACATG AAGTCCACATCTA CCCTGGCTGC TCGCA TGCTTTTAT GAACACA TCA CCTGAGG CCGTCA AGAGGA GGAAGGAGATGGGTCTGACTGATGAGAACCAGGCAGCA ATTGACCTGGCCTGGTCTC ]
[+] EMBL BI799133 [ cggt cGTC AA GATA TCA GCTTCAGTTAAATGGCTCAA GCAAATGGATCACCCCAAGTTGTTGTTACTGGATA TCCATGGGAGG CGCCTTTGTCAATCGCAAGTGGAGTTTCAGTCCCAGAGGTTGAT GCTGTTGTG GCTTTCTATGGGACACCACCT TCTGAGCTTGCCGATGCTTCCAAGGCCCAGGCTCCCATCCAGGCTCATTTTGGGGAGCTTGACAGTTTTGTTGGATTTGCAGATGTCA CGGCAGCCA AGTCG CTGGAGGA G AAGCTCAA GTCATCTGGCGTGCCACATG AAGTCCACATCTA CCCTGGCTGC TCGCA TGCTTTTAT GAACACA TCA CCTGAGG CCGTCA AGAGGA GGAAGGAGATGGGTCTGACTGATGAGAACCAGGCAGC ATTGACCTGGCCTGGTCTCGCTTCTCGACTTGGATGGGTCGTTTCCTTGGATCGGCGTGAGCCAT TTACGCATATATGTTGTCAACCTGTCAGGTTGTATGAATAAAATCATTCAGGCCAGATGCAGAGTAATTAAGTATACCC AACC AATAATTGTGCTGTGTT GGACTATGTGAACATGCCATGCTTTGGTTTGCGAATTAaaaaaa ]
[+] EMBL BI798311 [ TGGTAGGCCG CTTTGTCAA TGCAAGTGGAGTTCAAGTCCCAGAGGTTGATGCGCTGTTGTGCGCTTTCTATGGGACACCCCCTGTCTGAGCTTCCCGATGCTTCCAAGGCCCAGGCTCCCATCCAGGCTCATTTTGGGGAGCTTGACAGTTTTGTTGGATTTGCAGATGTCA C GCA CCA A TCG CTGGAGGA G AAGCTCAA GTCATCTGGCGTGCCACATG AAGTCCACATCTACCCCTGGCTGC TCGCA TGCTTTTAT GAACACA TCA CCTGAGG CCGTCA AGAGGA GGAAGGAGATGGGTCTGACTGATGAGAACCAGGCAGCA ATTGACCTGGCCTGGTCTCGCTTCTCGACTTGGATGGGTCGTTTCCTTGGATCGGCGTGA CCAT TTACGCATATATGTTGTCAACCTGTCAGGTTGTATGAATAAAATCATTCA GCCAGAT CAGAGTAATTAAGTATACCC AACC AATAATTGTCCTGT TT GGACTATGTGAACAT CCAT CTTT GTTTCCGAAaaaaaaaa ]
[+] EMBL BI795597 [ CCAGA GTTGAT CT TTGTG GCTTTCTATGGGACACCACCT TCTGAGCTTGCCGATGCTTCCAAGGCCCAGGCTCCCATCCAGGCTCATTTTGGGGAGCTTGACAGTTTTGTTGGATTTGCAGATGTCACCGGCAGCCACAGTCGCCTGGAGGACGAAAGCTCAAAGGTCATCTGGCGTGCCACATGAAAGTCCACATCTACCCCTGGCTGCTTCGCACTTGCTTTTATGGAACACACTCACCCCCTGAGGCCCGTCACAGAGGAGGGAAGGAGATGGGTCTGACTGATGAGAACCAGGCAGCACATTGACCTGGCCTGGTCTCGCTTCTCGACTTGGATGGGTCGTTTCCTTGGATCGGCGTGAGCCAT TTACGCATATATGTTGTCAACCTGTCAGGTTGTATGAATAAAATCATTCAGGCCAGATGCAGAGTAATTAAGTATACCCCAACC AATAATTGTGCTGTGTT GGACTATGTGAACATGCCATGCTTTGGTTTGCGAATTATCTGTGG TTTTACTGTGC TTTCG AGATTGCAAAAAAAAAA ]
[+] EMBL OSS12604A [ CATCTGGCGTGCCACATG AAGTCCACATCTA CCCTGGCTGC TCGCA TGCTTTTAT GAACACA TCA CCTGAGG CCGTCA AGAGGA GGAAGGAGATGGGTCTGACTGATGAGAACCAGGCAGCA ATTGACCTGGCCTGGTCTCGCTTCTCGACTTGGATGGGTCGTTTCCTTGGATCGGCGTGAG CATNTTACGCATATATGTTGTCAACCTGTCAGGTTGTATGAATAAAATCATTCAGGCCAGATGCAGAGTAATTAAGTATACCCAAACCAAATAATTGTGCTGTGTTGGGACTATGTGAACATGCCATGCTTTGGTTTTCGGATTATCTGTGGGTTTTTACTGTGCTTTTCGNGGATTTCATAAAAAAAAaa]
consensusID : consensus_15912#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 697 fasta sequence
[TGTCCNCATTTCCCAAATTGGTGAAGGATACAGAGCTCTCATTCCAGATTTGTATCGTGGTAA-GTTGCTCTTGATGTANCGGAAGCTCAGCATCTGATGGAAGGTCTAGACTGGCCGGGTGCGGTCAAGGATATTCAGGCTTCAGTTAAATGGCTCAAGG-CAAATGGATCACCCAAGGTTGGTGTTACTGGATATTGCATGGGAGGCGCTTTGTCAATTGCAAGTGGAGTTTCAGTCCCAGAGGTTGATGCTGTTGTGGC-TTTCTATGGGACACCACCTTCTGAGCTTGCCGATGCTTC-CAAGGCCCAGGCTCCCATCCAGGCTCATTTTGGGGAGCTTGACAGTTTTGTTGGATTTGCAGATGTCACGGCAGCCAAGTCGCTGGAGGAGAAGCTCAAGTCATCTGGCGTGCCACATGAAGTCCACATCTACCCTGGCTGCTCGCATGCTTTTATGAACACATCACCTGAGGCCGTCAAGAGGAGGAAGGAGATGGGTCTGACTGATGAGAACCAGGCAGCAATTGACCTGGCCTGGTCTCGCTTCTCGACTTGGATGGGTCGTTTCCTTGGATCGGCGTGAGCCATTTACGCATATATGTTGTCAACCTGTCAGGTTGTATGAATAAAATCATTCAGGCCAGATG-CAGAGTAATTAAGTATACCCAAACCAAATAATTGTGCTGAAAAAAAAAAAA]
[+] EMBL AU096244 [TGTCCNCATTTCCCAAATTGGTGAAGGATACAGAGCTCTCATTCCAGATTTGTATCGTGGTAA GTTGCTCTTGATGTANCGGAAGCTCAGCATCTGATGGAAGGTCTAGACTGGCCGGGTGCGGTCAAGGATATTCAGGCTTCAGTTAAATGGCTCAAGG CAAATGGATCACCCAAGGTTGGTGTTACTGGATATTGCATGGGAGGCGCTTTGTCAATTGCAAGTGGAGTTTCAGTCCCAGAGGTTGATGCTGTTGTGGC TTTCTATGGGACACCACCTTCTGAGCTTGCCGATGCTTC CAAGGCCCAGGCTCCCATCCAGGCTCATTTTGGGGAGCTTGACAGTTTTGTTGGATTTGCAGATGTCACGGCAGCCAAGTCGCTGGAGGAGAAGCTCAAGTCATCTGGCGTGCCACATGAAGTCCACATCTACCCTGGCTGCTCGCATGCTTTTATGAACACATCACCTGAGGCCGTCAAGAGGAGGAAGGAGATGGGTCTGACTGATGAGAACCAGGCAGCAATTGACCTGGCCTGGTCTCGCTTCTCGACTTGGATGGGTCGTTTCCTTGGATCGGCGTGAGCCATTTACGCATATATGTTGTCAACCTGTCAGGTTGTATGAATAAAATCATTCAGGCCAGATG CAGAGTAATTAAGTATACCCAAACCAAATAATTGTGCTGAAAAAAAAAAAA]
[+] EMBL AU162926 [ CCCAAATTGGTGAAGGATACAGAGCTCTCATNCCAGATTTGTATCGTGGTAAGGTTGCTCTTGATGTANCGGAAGCTCAGCATCTGATGGAAGGTCTAGACTGGCCGGGTGCGGTCAAGGATATTCAGGCTTCAGTTAAATGGCTCAAGGCCAAATGGATCACCCAAGGTTGGTGTTACTGGATATTGCATGGGAGGCGCTTTGTCAATTGCAAGTGGAGTTTCAGTCCCAGAGGTTGATGCTGTTGTGGC TTTCTATGGGACACCACCTTCTGAGCTTGCCGATGCTTC CAAGGCCCAGGCTCCCATCCAGGCTCATTTTGGGGAGCTTGACAGTTTTGTTGGATTTGCAGATGTCACGGCAGCCAAGTCGCTGGAGGAGAAGCTCAAGTCATCTGGCGTGCCACATGAAGTCCACATCTACCCTGGCTGCTCGCATGCTTTTATGAACACATCACCTGAGGCCGTCAAGAGGAGGAAGGAGATGGGTCTGACTGATGAGAACCAGGCAGCAATTGACCTGGCCTGGTCTCGCTTCTCGACTTGGATGGGTCGTTTCCTTGGATCGGCGTGAGCCATTTANGCATATATGTTGTCAACCTGTCAGGTTGTATGAATAAAATCATTCAGGCCAGATG CAGAGTAATTAAGTATACCCAAACCAAATAATTGTGCTGAAAAAAAAAAAA]
[+] EMBL AU096380 [ TATTCAGGCTTCAGTTAAATGGCTCAAGG CAAATGGATCACCCAAGGTTGGTGTTACTGGATATTGCATGGGAGGCGCTTTGTCAATTGCAAGTGGAGTTTCAGTCCCAGAGGTTGATGCTGTTGTGGC TTTCTATGGGACACCACCTTCTGAGCTTGCCGATGCTTC CAAGGCCCAGGCTCCCATCCAGGCTCATTTTGGGGAGCTTGACAGTTTTGTTGGATTTGCAGATGTCACGGCAGCCAAGTCGCTGGAGGAGAAGCTCAAGTCATCTGGCGTGCCACATGAAGTCCACATCTACCCTGGCTGCTCGCATGCTTTTATGAACACATCACCTGAGGCCGTCAAGAGGAGGAAGGAGATGGGTCTGACTGATGAGAACCAGGCAGCAATTGACCTGGCCTGGTCTCGCTTCTCGACTTGGATGGGTCGTTTCCTTGGATCGGCGTGAGCCATTTACGCATATATGTTGTCAACCTGTCAGGTTGTATGAATAAAATCATTCAGGCCAGATG CAGAGTAATTAAGTATACCCAAACCAAATAATTGTGCTGAAAAAAAAAAAA]
[+] EMBL BI805812 [ TGAT CTGTTGTGGCTTTTCTATGGGACACCACCTTCTGAGC TGCCGATGCTTCGCAAGGCCCAGGCTCCCATCCAGGCTCATTTTGGGGAGCTTGACA TTTT TTGGATTTGCAGATGTCACGGCAGCCAAGTCGCTGGAGGAGAAGCTCAAGTCATCTGGCGTGCCACATGAAGTCCACATCTA CCTGGCTGCTCGCATGCTTTTATGAACACATCACCTGA GCCGTCAAGAGGAGGAAGGAGATGGGTCTGACTGATGAGAACCAGGCAGCAATTGACCTGGCCTGGTCTCGCTTCTCGACTTGGATGGGTCGTTTCCTTGGATCGGCGTGAGCCATTTACGCATATATGTTGTCAACCTGTCA GTTGTATGAATAAAATCATTCAGGCCAGATGCCAGAGTAATTAAGTATACCC AACCA ]
consensusID : consensus_15912#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 479 fasta sequence
[CACCACCTTCTGAGCTTCCGATGCTTCCAAGGCCCAGGCTCCCATCAGGCTCATTTTGGGGAGCTTGACACGTTTTGTTGGATTTGCAGATGTCACGGCAGCCAA-TCGCTGGAGGAGAAGCTCAAGTCATCTGGCGTGCCACATGAAGTCCACATCTACCCTGGCTGCTCGCATGCTTTTATGAACACATCACCTGAGGCCGTCAAGAGGAGGAAGGAGATGGGTCTGACTGATGAGAACCAGGCAGCAATTGACCTGGCCTGGTCTCGCTTCTCGACTTGGATGGGTCGTTTCCTTGGATCGGCGTGAGCCATTTACGCATATATGTTGTCAACCTGTCAGGTTGTATGAATAAAATCATTCAGGCCAGATGCAGAGTAATTAAGTATACCCAAACCAAATAATTGTGCTGTGTTGGACTATGTGAACATGCCATGCTTTGGTTTGCGAATTTAAAAAAAAAAACTGTCATGCCGTTA]
[+] EMBL BI808521 [CACCACCTTCTGAGCTTCCGATGCTTCCAAGGCCCAGGCTCCCATCAGGCTCATTTTGGGGAGCTTGACACGTTTTGTTGGATTTGCAGATGTCACGGCAGCCAA TCGCTGGAGGAGAAGCTCAAGTCATCTGGCGTGCCACATGAAGTCCACATCTACCCTGGCTGCTCGCATGCTTTTATGAACACATCACCTGAGGCCGTCAAGAGGAGGAAGGAGATGGGTCTGACTGATGAGAACCAGGCAGCAATTGACCTGGCCTGGTCTCGCTTCTCGACTTGGATGGGTCGTTTCCTTGGATCGGCGTGAGCCATTTACGCATATATGTTGTCAACCTGTCAGGTTGTATGAATAAAATCATTCAGGCCAGATGCAGAGTAATTAAGTATACCCAAACCAAATAATTGTGCTGTGTTGGACTATGTGAACATGCCATGCTTTGGTTTGCGAATTTAAAAAAAAAA ]
[-] EMBL CF293123 [ AGCTTGACA GTTTTGTTGGATTTGCAGATGTCACGGCAGCCAAGTCGCTGGAGGAGAAGCTCAAGTCATCTGGCGTGCCACATGAAGTCCACATCTACCCTGGCTGCTCGCATGCTTTTATGAACACATCACCTGGGGCCGTCAAGAGGAGGAAGGAGATGGGTTTGACTGATGAGAACCAGGCAGCAATTGACCTGGCCTGGTCTCGCTTCTCGACTTGGATGGGTCGTTTCCTTGGATCGGCGTGAGCCATTTACGCATATATGTTGTCAACCTGTCAGGTTGTATGAATAAAATCATTCAGGCCAGATGCAGAGTAATTAAGTATACCCAAACCAAATAATTGTGCTGTGTTGGACTATGTGAACAAGCCATGCTTTGGTTTGCGAAAAAAAAAAAAAACACTGTCATGCCGTTA]
consensusID : consensus_15912#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 386 fasta sequence
[ANTCGCTGGAGGAGAAGCTCAAGTCATNTGGCGTGCCACATGAAGTCCNCATCTACCCTGGCTGCTCGCATGCTTTTATGAACACATCNCCTGAGGCCGTCAAGAGGAGGAAGGAGATGGGTCTGNCTGATGAGAACCAGGCAGCAATTGACCTGGCCTGGTCTCGCTTCTCGACTTGGATGGGTCGTTTCCTTGGATCGGCGTGAGCCATTTACGCATATATGTTGTCAACCTGTCAGGTTGTATGAATAAAATCATTCAGGCCAGATGCAGAGTAATTAAGTATACCCAAACCAAATAATTGTGCTGTGTTGGACTATGTGAACATGCCATGCTTTGGTTTGCGAATTATCTGTGGTTTTACTGTGCAAAAAAAAAAAAAAAAA]
[+] EMBL AU096172 [ANTCGCTGGAGGAGAAGCTCAAGTCATNTGGCGTGCCACATGAAGTCCNCATCTACCCTGGCTGCTCGCATGCTTTTATGAACACATCNCCTGAGGCCGTCAAGAGGAGGAAGGAGATGGGTCTGNCTGATGAGAACCAGGCAGCAATTGACCTGGCCTGGTCTCGCTTCTCGACTTGGATGGGTCGTTTCCTTGGATCGGCGTGAGCCATTTACGCATATATGTTGTCAACCTGTCAGGTTGTATGAATAAAATCATTCAGGCCAGATGCAGAGTAATTAAGTATACCCAAACCAAATAATTGTGCTGTGTTGGACTATGTGAACATGCCATGCTTTGGTTTGCGAATTATCTGTGGTTTTACTGTGCAAAAAAAAAAAAAAAAA]
[+] EMBL AU197930 [ CAGCAATTGACCTGGCCTGGTCTCGCTTNTCGACTTGGATGGGTCGTTTCCTTGGATCGGCGTGAGCCATTTACGCATATATGTTGTCAACCTGTCAGGTTGTATGAATAAAATCATTCAGGCCAGATGCAGAGTAATTAAGTATACCCAAACCAAATAATTGTGCTGTGTTGGACTATGTGAACATGCCATGCTTTGGTTTGCGAATTATCTGTGGTTTTACTGTGCAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15912#2 ------------------------------------------------------------
consensus_15912#3 ------------------------------------------------------------
consensus_15912#0 CTGCTGCTTGGGATTTGATTAGTTGTGTTGAGAGATGGCCACACCGCAACTGCTGCTACG 60
consensus_15912#1 ------------------------------------------------------------
consensus_15912#2 ------------------------------------------------------------
consensus_15912#3 ------------------------------------------------------------
consensus_15912#0 CCGCGCCTTCTCCTCCTCCTTCCTCTCCTCCCCATTCCGCCGCCCGCCACTCCACCCCGC 120
consensus_15912#1 ------------------------------------------------------------
consensus_15912#2 ------------------------------------------------------------
consensus_15912#3 ------------------------------------------------------------
consensus_15912#0 CCGCTCCTTCGTTCCCCCCCGCGCCGCCATGGCATCCTCCGCCGCGCCGTTCCACATGGT 180
consensus_15912#1 ------------------------------------------------------------
consensus_15912#2 ------------------------------------------------------------
consensus_15912#3 ------------------------------------------------------------
consensus_15912#0 CCAGATCCAGCGCGACGACACGACTTTTGATGCCTATGTTGTTGGAAAAGAGAATGCTCC 240
consensus_15912#1 ------------------------------------------------------------
consensus_15912#2 ------------------------------------------------------------
consensus_15912#3 ------------------------------------------------------------
consensus_15912#0 TGGAATTGTTGTTTTGCAAGAGTGGTGGGGGGTTGACTATGAGATCAAGAATCATGCTGT 300
consensus_15912#1 ---------------------------------------------------------TGT 3
consensus_15912#2 ------------------------------------------------------------
consensus_15912#3 ------------------------------------------------------------
consensus_15912#0 CCACATTTCCCAAATTGGTGAAGGATACAGAGCTCTCATTCCAGATTTGTATCGTGGTAA 360
consensus_15912#1 CCNCATTTCCCAAATTGGTGAAGGATACAGAGCTCTCATTCCAGATTTGTATCGTGGTAA 63
consensus_15912#2 ------------------------------------------------------------
consensus_15912#3 ------------------------------------------------------------
consensus_15912#0 GGTTGCTCTTGATGTAGCGGAAGCTCAGCATCTGATGGAAGGTCTAGACTGGCCGGGTGC 420
consensus_15912#1 G-TTGCTCTTGATGTANCGGAAGCTCAGCATCTGATGGAAGGTCTAGACTGGCCGGGTGC 122
consensus_15912#2 ------------------------------------------------------------
consensus_15912#3 ------------------------------------------------------------
consensus_15912#0 GGTCAAGGATATTCAGGCTTCAGTTAAATGGCTCAAGGCAAATGGATCACCCAAGGTTGG 480
consensus_15912#1 GGTCAAGGATATTCAGGCTTCAGTTAAATGGCTCAAGGCAAATGGATCACCCAAGGTTGG 182
consensus_15912#2 ------------------------------------------------------------
consensus_15912#3 ------------------------------------------------------------
consensus_15912#0 TGTTACTGGATATTGCATGGGAGGCGCTTTGTCAATTGCAAGTGGAGTTTCAGTCCCAGA 540
consensus_15912#1 TGTTACTGGATATTGCATGGGAGGCGCTTTGTCAATTGCAAGTGGAGTTTCAGTCCCAGA 242
consensus_15912#2 -----------------------------CACCACCTTCTGAGCTT-CCGATGCTTCCAA 30
consensus_15912#3 ------------------------------------------------------------
consensus_15912#0 GGTTGATGCTGTTGTGGCTTTCTATGGGACACCACCTTCTGAGCTTGCCGATGCTTCCAA 600
consensus_15912#1 GGTTGATGCTGTTGTGGCTTTCTATGGGACACCACCTTCTGAGCTTGCCGATGCTTCCAA 302
consensus_15912#2 GGCCCAGGCTCCCATCAGGCTCATTTTGGGGAGCTTGACACGTTTTGTTGGATTTGCAGA 90
consensus_15912#3 ------------------------------------------------------------
consensus_15912#0 GGCCCAGGCTCCCATCCAGGCTCATTTTGGGGAGCTTGACAGTTTTGTTGGATTTGCAGA 660
consensus_15912#1 GGCCCAGGCTCCCATCCAGGCTCATTTTGGGGAGCTTGACAGTTTTGTTGGATTTGCAGA 362
consensus_15912#2 TGTCACGGCAGCCAA-TCGCTGGAGGAGAAGCTCAAGTCATCTGGCGTGCCACATGAAGT 149
consensus_15912#3 -------------AN-TCGCTGGAGGAGAAGCTCAAGTCATNTGGCGTGCCACATGAAGT 46
consensus_15912#0 TGTCACGGCAGCCAAGTCGCTGGAGGAGAAGCTCAAGTCATCTGGCGTGCCACATGAAGT 720
consensus_15912#1 TGTCACGGCAGCCAAGTCGCTGGAGGAGAAGCTCAAGTCATCTGGCGTGCCACATGAAGT 422
* ************************* ******************
consensus_15912#2 CCACATCTACCCTGGCTGCTCGCATGCTTTTATGAACACATCACCTGAGGCCGTCAAGAG 209
consensus_15912#3 CCNCATCTACCCTGGCTGCTCGCATGCTTTTATGAACACATCNCCTGAGGCCGTCAAGAG 106
consensus_15912#0 CCACATCTACCCTGGCTGCTCGCATGCTTTTATGAACACATCACCTGAGGCCGTCAAGAG 780
consensus_15912#1 CCACATCTACCCTGGCTGCTCGCATGCTTTTATGAACACATCACCTGAGGCCGTCAAGAG 482
** *************************************** *****************
consensus_15912#2 GAGGAAGGAGATGGGTCTGACTGATGAGAACCAGGCAGCAATTGACCTGGCCTGGTCTCG 269
consensus_15912#3 GAGGAAGGAGATGGGTCTGNCTGATGAGAACCAGGCAGCAATTGACCTGGCCTGGTCTCG 166
consensus_15912#0 GAGGAAGGAGATGGGTCTGACTGATGAGAACCAGGCAGCAATTGACCTGGCCTGGTCTCG 840
consensus_15912#1 GAGGAAGGAGATGGGTCTGACTGATGAGAACCAGGCAGCAATTGACCTGGCCTGGTCTCG 542
******************* ****************************************
consensus_15912#2 CTTCTCGACTTGGATGGGTCGTTTCCTTGGATCGGCGTGAGCCATTTACGCATATATGTT 329
consensus_15912#3 CTTCTCGACTTGGATGGGTCGTTTCCTTGGATCGGCGTGAGCCATTTACGCATATATGTT 226
consensus_15912#0 CTTCTCGACTTGGATGGGTCGTTTCCTTGGATCGGCGTGAGCCATTTACGCATATATGTT 900
consensus_15912#1 CTTCTCGACTTGGATGGGTCGTTTCCTTGGATCGGCGTGAGCCATTTACGCATATATGTT 602
************************************************************
consensus_15912#2 GTCAACCTGTCAGGTTGTATGAATAAAATCATTCAGGCCAGATGCAGAGTAATTAAGTAT 389
consensus_15912#3 GTCAACCTGTCAGGTTGTATGAATAAAATCATTCAGGCCAGATGCAGAGTAATTAAGTAT 286
consensus_15912#0 GTCAACCTGTCAGGTTGTATGAATAAAATCATTCAGGCCAGATGCAGAGTAATTAAGTAT 960
consensus_15912#1 GTCAACCTGTCAGGTTGTATGAATAAAATCATTCAGGCCAGATGCAGAGTAATTAAGTAT 662
************************************************************
consensus_15912#2 ACCCAAACCAAATAATTGTGCTGTGTTGGACTATGTGAACATGCCATGCTTTGGTTTGCG 449
consensus_15912#3 ACCCAAACCAAATAATTGTGCTGTGTTGGACTATGTGAACATGCCATGCTTTGGTTTGCG 346
consensus_15912#0 ACCCAAACCAAATAATTGTGCTGTGTTGGACTATGTGAACATGCCATGCTTTGGTTTGCG 1020
consensus_15912#1 ACCCAAACCAAATAATTGTGCTGAAAAAAAAAAAA------------------------- 697
*********************** * *
consensus_15912#2 AATTTAAAAAAAAAAACTGTCATGCCGTTA----------------- 479
consensus_15912#3 AATT--ATCTGTGGTTTTACTGTGCAAAAAAAAAAAAAAAAA----- 386
consensus_15912#0 AATTATCTGTGGTTTTACTGTGCTTTCGAGATTGCATAAAAAAAATG 1067
consensus_15912#1 -----------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||