These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15932#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 18 consensus length = 1613 fasta sequence [TTTCTCAAGCGCTAATCTAATCTACTTGGGGCAGTGGTAACAGGGGGAGGCCAACGCGGGGGAAACAGCTGACGCGCTCCGCTCCGTTCCGCTGCCGCCGTTGGCCGGCCGGGCGGTCGCTGTTGCTGACTTGACCAGAGACGAGCAGCAAGGGGGCAGTTGGATTGGATTAGAGGGTGCTTTTATATAGAGGAGCACGAGGAGGAGGAGGAGGAGGGCCATCAAGCATATCCATCTCCGATTCACAGATTCTTTCTGGAGATCCATCATCCAGCGAGAGCGAGAGCGAG-AGGGAGAGGAAGAGGGAAAGCCGCCACCGCCATGTT-GGGGCATCTGG-TTGGGCTGGTGAAGGTGCGGGTGGTGAGGGGCGTCAACCTCGCCGTCCGCGACCTCCGCTCCAGCGACCCCTACGTCATCGTCCGCATGGGCAAGCAGAAGTTGAAGACACGAGTCATAAAAAAGACTACCAATCCGGAGTGGAACGAT-GAACTCACCCTCTCGATTGAAGATCCAGCAGTTCCTGTTAGAC-TGGAAGTGTA-TGACAAAGACACATTCATCGATGATGCAATGGGCAATGCGGAGCTGGACATCCGCCCATTGGTGG-AGGTTGTCAAGATGAAGATTGA-GGGTGTTGCTGACAACACGGTTGTGAAGAAAGTGGTACCCAATAGACAGAACTGCCTAGCTGAAGAGAGCACGATATATATCTCT-GAGGGGAAGGTGAAGCAAGACGTGGTTCTCAGACTAAGGGATGTGGAATGCGGGGAAATTGAGCT-CCAGCTTCAGTGGGTCGACATC-CCAGG-TTCT-AAGGGTGTATGAA--CT-C-TGTA-CTC-TG-CCTATTGCTTA-CAGTCTTGCATAGCTCGCAAGTCCAACTCTAAGTTTATCA-GTGGACAATCA-AATAAGCAACAGC-TTATATTGAT-GAGATTCTTTTACTGTCCTTGAGGAGGCAGATACCTCCCAGTGCCTCCTCAAT-GGCTGTAAAATCATTCTTATGTT-GACACAGCAAGTGTCTCGAAGATCCCCCACTA-GGTGTTT-GGGCAGAGCAAAGTTGTAC-AATATGTCTGCAAAGTATAGTTTGGTGTTA-CCCTGTCTGTAGAAAAATAATCAGT-GG-CAGGGGTTGTAACTATTGAAACTTTGTCTGTCTTTCTTCTTGTACGCCAAAGACCAATGCTATCTGCGATTAATCTTCCTAGCTTTCATGCAAAATTTGATTGTGGATGGTCAGCCAGTTTACATGCAATTTTGCCAAAAAAAATGTCATGTTATGTGGAGAACATGTTAGTGCTATTGGTCTCAGCATTGGAATAACTGCAGTCAAGATACACTACAGGACGACCATTTTACTAGTGGTAAATTTAGAGTTTTGAACTAGGAACATCCGAACAGACGAGTATAAGACAGTATGACACCTAACTACTGCAGACACCCTTCACAATATCAAACCCGGGTCAACACATGAGACGGCAGGACAATAAAATCAGTGGTAATACTTAGAAAGTTACCTTCTGTTTCATACGTATCAAATCATACAAATTTTAAGACTGGCCAAATTGTATAAAAAGTTAGTAAATATCTATAACAAACGGTGGCGCTAATTAGCGCGTTGGGAGCAAAAA] [+] EMBL C28303 [TTTCTCAAGCGCTAATCTAATCTACTTGGGGCAGTGGTAACAGGGGGAGGCCAACGCGGGGGAAACAGCTGACGCGCTCCGCTCCGTTCCGCTGCCGCCGTTGGCCGGCCGGGCGGTCGCTGTTGCTGACTTGACCAGAGACGAGCAGCAAGGGGGCAGTTGGATTGGATTAGAGGGTGCTTTTATATAGAGGAGCACGAGGAGGAGGAGGAGGAGGGCCATCAAGCATATCCATCTCCGATTCACAGATTCTTTCTGGAGATCCATCATCCAGCGAGAGCAAGANCANG AGGGAGAGGAAGAGGGAAAGCCGCCACCGCCATGTTNGGGGCATCTGGTTTGGGCTNGTGAAGGTNCGGGTTGTGAGGGGCGTCAACCTTGCCGTCCGGGACCTCCGTTCCAGCGACC ] [+] EMBL CK085058 [ TCAAGCGCTAATCTAATCTACTTGGGGCAGTGGTAACAGGGGGAGGCCAACGCGGGGGAAACAGCTGACGCGCTCCGCTCCGTTCCGCTGCCGCCGTTGGCCGGCCGGGCGGTCGCTGTTGCTGACTTGACCAGAGACGAGCAGCAAGGGGGCAGTTGGATTGGATTAGAGGGTGCTTTTATATAGAGGAGCACGAGGAGGAGGAGGAGGAGGGCCATCAAGCATATCCATCTCCGATTCACAGATTCTTTCTGGAGATCCATCATCCAGCGAGAGCGAGAGCGAG AGGGAGAGGAAGAGGGAAAGCCGCCACCGCCATGTT GGGGCATCTGG TTGGGCTGGTGAAGGTGCGGGTGGTGAGGGGCGTCAACCTCGCCGTCCGCGACC ] [+] EMBL AK073631 [ AGAGACGAGCAGCAAGGGGGCAGTTGGATTGGATTAGAGGGTGCTTTTATATAGAGGAGCACGAGGAGGAGGAGGAGGAGGGCCATCAAGCATATCCATCTCCGATTCACAGATTCTTTCTGGAGATCCATCATCCAGCGAGAGCGAGAGCGAG AGGGAGAGGAAGAGGGAAAGCCGCCACCGCCATGTT GGGGCATCTGG TTGGGCTGGTGAAGGTGCGGGTGGTGAGGGGCGTCAACCTCGCCGTCCGCGACCTCCGCTCCAGCGACCCCTACGTCATCGTCCGCATGGGCAAGCAGAAGTTGAAGACACGAGTCATAAAAAAGACTACCAATCCGGAGTGGAACGAT GAACTCACCCTCTCGATTGAAGATCCAGCAGTTCCTGTTAGAC TGGAAGTGTA TGACAAAGACACATTCATCGATGATGCAATGGGCAATGCGGAGCTGGACATCCGCCCATTGGTGG AGGTTGTCAAGATGAAGATTGA GGGTGTTGCTGACAACACGGTTGTGAAGAAAGTGGTACCCAATAGACAGAACTGCCTAGCTGAAGAGAGCACGATATATATCTCT GAGGGGAAGGTGAAGCAAGACGTGGTTCTCAGACTAAGGGATGTGGAATGCGGGGAAATTGAGCT CCAGCTTCAGTGGGTCGACATC CCAGG TTCT AAGGGTGTATGAA CT C TGTA CTC TG CCTATTGCTTA CAGTCTTGCATAGCTCGCAAGTCCAACTCTAAGTTTATCA GTGGACAATCA AATAAGCAACAGC TTATATTGAT GAGATTCTTTTACTGTCCTTGAGGAGGCAGATACCTCCCAGTGCCTCCTCAAT GGCTGTAAAATCATTCTTATGTT GACACAGCAAGTGTCTCGAAGATCCCCCACTA GGTGTTT GGGCAGAGCAAAGTTGTAC AATATGTCTGCAAAGTATAGTTTGGTGTTA CCCTGTCTGTAGAAAAATAATCAGT GG CAGGGGTTGTAACTATTGAAACTTTGTCTGTCTTTCTTCTTGTACGCCAAAGACCAATGCTATCTGCG ] [+] EMBL AK104165 [ CAAGCATATCCATCTCCGATTCACAGATTCTTTCTGGAGATCCATCATCCAGCGAGAGCGAGAGCGAG AGGGAGAGGAAGAGGGAAAGCCGCCACCGCCATGTT GGGGCATCTGG TTGGGCTGGTGAAGGTGCGGGTGGTGAGGGGCGTCAACCTCGCCGTCCGCGACCTCCGCTCCAGCGACCCCTACGTCATCGTCCGCATGGGCAAGCAGAAGTTGAAGACACGAGTCATAAAAAAGACTACCAATCCGGAGTGGAACGAT GAACTCACCCTCTCGATTGAAGATCCAGCAGTTCCTGTTAGAC TGGAAGTGTA TGACAAAGACACATTCATCGATGATGCAATGGGCAATGCGGAGCTGGACATCCGCCCATTGGTGG AGGTTGTCAAGATGAAGATTGA GGGTGTTGCTGACAACACGGTTGTGAAGAAAGTGGTACCCAATAGACAGAACTGCCTAGCTGAAGAGAGCACGATATATATCTCT GAGGGGAAGGTGAAGCAAGACGTGGTTCTCAGACTAAGGGATGTGGAATGCGGGGAAATTGAGCT CCAGCTTCAGTGGGTCGACATC CCAGG TTCT AAGGGTGTATGAA CT C TGTA CTC TG CCTATTGCTTA CAGTCTTGCATAGCTCGCAAGTCCAACTCTAAGTTTATCA GTGGACAATCA AATAAGCAACAGC TTATATTGAT GAGATTCTTTTACTGTCCTTGAGGAGGCAGATACCTCCCAGTGCCTCCTCAAT GGCTGTAAAATCATTCTTATGTT GACACAGCAAGTGTCTCGAAGATCCCCCACTA GGTGTTT GGGCAGAGCAAAGTTGTAC AATATGTCTGCAAAGTATAGTTTGGTGTTA CCCTGTCTGTAGAAAAATAATCAGT GG CAGGGGTTGTAACTATTGAAACTTTGTCTGTCTTTCTTCTTGTACGCCAAAGACCAATGCT ] [+] EMBL CF320177 [ CCATCTCCGATTCACAGATTCTTTCTGGAGATCCATCATCCAGCGAGAGCGAGAGCGAG AGGGAGAGGAAGAGGGAAAGCCGCCACCGCCATGTT GGGGCATCTGG TTGGGCTGGTGAAGGTGCGGGTGGTGAGGGGCGTCAACCTCGCCGTCCGCGACCTCCGCTCCAGCGACCCCTACGTCATCGTCCGCATGGGCAAGCAGAAGTTGAAGACACGAGTCATAAAAAAGACTACCAATCCGGAGTGGAACGAT GAACTCACCCTCTCGATTGAAGATCCAGCAGTTCCTGTTAGAC TGGAAGTGTA TGACAAAGACACATTCATCGATGATGCAATGGGCAATGCGGAGCTGGACATCCGCCCATTGGTGGNAGGTTGTCAAGATGAAGATTGAGGGGTGTTGCTGACAACACGGTTGTGAAGAAAGTGGTACCCAATAGACAGAACTGCCTAGCTGAAGAGAGCACGATATATATCTCTNGAGGGGAAGGTGAAGCAAGACGTGGTTCTCAGACT AGGGATGTGGAATGCGGGGAAATTGAGCT CCAGCTTCAGTGGGTCGACATC CCAGG TTCTAAAGGGTGTATGAA CT C TGTA CTC TG CCTATTGCTTA CAGTCTTGCATAGCTCGCAAGTCCAACTCTAAGTTTATCA GTGGACAATCA AAT ] [+] EMBL CA755521 [ ACAGATTCTTTCTGGAGATCCATCATCCAGCGAGAGCGAGAGCGAG AGGGAGAGGAAGAGGGAAAGCCGCCACCGCCATGTT GGGGCATCTGG TTGGGCTGGTGAAGGTGCGGGTGGTGAGGGGCGTCAACCTCGCCGTCCGCGACCTCCGCTCCAGCGACCCCTACGTCATCGTCCGCATGGGCAAGCAGAAGTTGAAGACACGAGTCATAAAAAAGACTACCAATCCGGAGTGGAACGAT GAACTCAGCCTCTCGATTGAAGATCCAGCAGTTCCTGTTAGAC TGGAAGTGTA TGACAAAGACACATTCATCGATGATGCAATGGGCAATGCGGAGCTGGACATCCGCCCATTGGTGG AGGTTGTCAAGATGAAGATTGA GGGTGTTGCTGACAACACGGTTGTGAAGAAAGTGGTACCCAATAGACAGAACTGCCTAGCTGAAGAGAGCACGATATATATCTCT GAGGGGAAGGTGAAGCAAGACGTGGTTCTCAGACTAAGGGATGTGGAATGCGGGGAAATTGAGCT CCAGCTTCAGTGGGTCGACATC CCAGGNNTCT AGGGTGTATGAA CT C TGTA CTC TG CCTATTGCTTA CAG ] [+] EMBL AU063869 [ AGATTCTTTCTGGAGATCCATCATCCAGCGAGAG GNGAGCNNGNAGGGAGAGGAAGAGGGAAAGCCGCCACCGCCATGTT GGGGCATCTGG TTGGGCTGGTGAAGGTGCGGGTGGTGAGGGGCGTCAACCTCGCCGTCCGCGACCTCCGCTCCAGCGACCCCTACGTCATCGTCCGCATGGGCAAGCAGAAGTTGAAGACACGAGTCATAAAAAAGACTACCAATCCGGAGTGGAACGGT GAACTCACCCTCTCGATTGAAGATCCAGCAGTTCCTGTTAGAC TGGAAGTGTA TGACAAAGACACATTCATCGATGATGCAATGG ] [+] EMBL AU063887 [ AGATTCTTTCTGGAGATCCATCATCCAGCGAGAG GAGAGCGNG AGGGAGAGGAAGAGGGAAAGCCGCCACCGCCATGTT GGGGCATCTGG TTGGGCTGGTGAAGGTGCGGGTGGTGAGGGGCGTCAACCTCGCCGTCCGCGACCTCCGCTCCAGCGACCCCTACGTCATCGTCCGCATGGGCAAGCAGAAGTTGAAGACACGAGTCATAAAAAAGACTACCAATCCGGAGTGG ACGGT GAACTCACCCTCTCGATTGAAGATCCAGCAGTTCCTGTTAGACTTGGAAGTGTATTGACAAAGACACATTCATCG ] [+] EMBL AU032213 [ TGGAACGNTNGAACTCACCCTCTCGATTGAAGATCCAGCAGTTCCTGTTAGAC TGGAAGTGTA TGACAAAGACACATTCATCGATGATGCAATNGGCAATGCGGAG TGGACATCCGCCCATTGGTGG AGGTTGTCAAGATGAAGATTGA GGGTGTTGCTGACAACACGGTTGTGAAGAAAGTGGTACCCAATAGACAGAACTGCCTAGCTGAAGAGAGCACGATATATATCTCT GAGGGGAAGGTGAAGCAAGACGTGGTTCTCAGACTAAGGGATGTGGAATGCGGGGAAATTGAGCT CCAGCTTCAGTGGGTCGACATC CCAGG TTCT AAGGGTGTATGAA CT CTTGTA CTC TG CCTATTGCTTA CAGTCTTGCATAGCTCGAAAGTNCCACTCTAAG TTATCA GTGG CCATC AATAAGC ACAG TTATATTGAT GGGA TCTTTa ] [+] EMBL AU092866 [ tcCCTGTTAGAC TGGAAGTGTA TNACAAAGACACATTCATCGATGATNCAATGGGCAATGCGGAGCTGGACATCCGCCCATTGGTGG AGGTTGTCAAGATGAAGATTGA GGGTGTTGCTGACAACACGGTTGTGAAGAAAGTGGTACCCAATAGACAGAACTNCCTAGCTGAAGAGAGCACGATATATATCTCT GAGGGGAAGGTGAAGCAAGACGTGGTTCTCAGACTAAGGGATGTGGAATGCGGGGAAATTGAGCTCCCAGCTTCAGTGGGTCGACATC CCAGG TTCT AAGGGTGTATGAA CT C TGTA CTC TG CCTATTGCTTA CAGTCTTGCATAGCTCGCAAGTCCAACTCTAAGTTTATCA GTGGACAATCA AATAAGCAACAGC TTATATTGAT GAGATTCTTTTACTGTCCTTGAGGAGGCAGATACCTCCCAGTGCCTCCTCAAT GGCTGTAAAATCATTCTTATGTT GACACAGCAAGTGTCTCGAAGATCCCCCACTA GGTGTTT GGGCAGAGCAAAGTTGTAC AATATGTCTGCAAAGTATAGTTTGGTGTTA CCCTGTCTGTAGAAAAATAATCAGT GG CAGGGGTTGTAACTATTGAAACTTTGTCTGTCTTTCTTCTTGTACGCCAAAGACCAATGCTATCTGCGATTAAaaa ] [+] EMBL AU031549 [ ATGATGCAATGGGCAATGCGGA CTGGACATCCGCCCATTGGTGG AGGTTGTCAAGATGAAGATTGA GGGTGTTGCTGACAACACGGTTGTGAAGAAAGTGGTACCCAATAGACAGAACTGCCTAGCTGAAGAGAGCACGATATATATCTCT GAGGGGAAGGTGAAGCAAGACGTGGTTCTCAGACTAAGGGATGTGGAATGCGGGGAAATTGAGCT CCAGCTTCAGTGGGTCGACATC CCAGG TTCT AAGGGTGTATGAA CT C TGTA CTC TG CCTATTGCTTA CAGTCTTGCATAGCTCGCAAGTCCAACTCTAAGTTTATCA GTGGACAATCA AATAAGCAACAGC TTATATTGATGGAGATTCTTTTACTGTCCTTGAGGAGGCAGATACCTCCCAGTGCCTCCTCAATGGGCTGTAAAATCATTCTTATGTTGGACACAGCAAGTGTCTCGAAGATCCCCCACTA GGTGTTTGGGGCAGAGCAAAGTTGTACAAATATGTCTGCAAAGTATAGTTTGGTGTTA CCCTGTCTGTAGAAAAATAATCAGTGGG CAGGGGTTGTAACTATTGANAC ] [-] EMBL CF320178 [ AGGGGAAGGTGAAGCAAGACGTGGTTCTCAGACTAAGGGATGTGGAATGCGGGGAAATTGAGCT CCAGCTTCAGTGGGTCGACATCNCCAGG TTCT AAGGGTGTATGAA CT C TGTA CTC TG CCTATTGCTTA CAGTCTTGCATAGCTCGCAAGTCCAACTCTAAGTTTATCA GTGGACAATCA AATAAGCAACAGCNTTATATTGAT GAGATTCTTTTACTGTCCTTGAGGAGGCAGATACCTCCCAGTGCCTCCTCAAT GGCTGTAAAATCATTCTTATGTT GACACAGCAAGTGTCTCGAAGATCCCCCACTA GGTGTTT GGGCAGAGCAAAGTTGTAC AATATGTCTGCAAAGTATAGTTTGGTGTTA CCCTGTCTGTAGAAAAATAATCAGT GG CAGGGGTTGTAACTATTGAAACTTTGTCTGTCTTTCTTTTTGTACGCCAAAGACCAATGCTATCTGCGATTAATCTTCCTAGCTTTCATGCAAAATTTGATTGTGGATGGTCAGCCAGTTTACATGCAACTTTGCCAAAAAAA ] [+] EMBL AA752017 [ acgagGAAGCAAGAC TGGTTCTCAGACTAAGGGATGTGGAATGCGGGGAAATTGAGCT CCAGCTTCAGTGGGTCGACATC CCANG TTCT AAGGGTGTATGAA CT C TGTA CTC TG CCTATTGCTTA CAGTCTTGCATAGCTCGCAAGTCCAACTCTAAGTTTATCA GTGGACAATCA AATAANCAACAGC TTATATTGAT GANATTCTTTTACTGTCCTTGANGANGCAGATACCTCCCAGTGCCTCCTCAAT GGCTGTAAAATCATTCTTATGTT GACACAGCAAGTGTCTCNAAAAT CCCCACTA AGTGTTT GGGCAGAACAAAGTTGTAC AATATGTCTGCAAAGTATANTTTGGTGTTA CCCTGTCTGTAAAAAAATAATCAGT GG CANGGGTTG ] [+] EMBL AU184723 [ TTCAGTGGGTCGACATC CCAGG TTCT AAGGGTGTATGAA CT C TGTA CTC TG CCTATTGCTTA CAGTCTTGCATAGCTCGCAAGTCCAACTNTAAGTTTATCA GTGGACAATCA AATAAGCAACAGC TTATATTGAT GAGATTCTTTTACTGTCCTTGAGGAGGCAGATACCTCCCAGTGCCTCCTCAAT GGCTGTAAAATCATTCTTATGTT GACACAGCAAGTGTCTCGAAGATCCCCCACTA GGTGTTT GGGCAGAGCAAAGTTGTAC AATATGTCTGCAAAGTATAGTTTGGTGTTA CCCTGTCTGTAGAAAAATAATCAGT GG CAGGGGTTGTAACTATTGAAACTTTGTCTGTCTTTCTTCTTGTACGCCAAAGACCAATGCTATCTGCGATTAATCTTCCTAGCTTTCATGCAAAAaa ] [+] EMBL AU101583 [ AAGGGTGTATGAA CT C TGTA CTC TN CCTATTGCTTA CAGTCTTGCATAGCTCGCAAGTCCAACTCTAAGTTTATCA GTGGACAATCA ANTAAGCAACAGC TTATATTGAT GAGATTCTTTTACTGTCCTTGAGGAGGCAGATNCCTCCCAGTGCCTCCTCAAT GGCTGTAAAATCATTCTTATGTT GACACAGCAAGTGTCTCGAAGATCCCCCACTA GGTGTTT GGGCAGAGCAAAGTTGTAC AATATGTCTGCAAAGTATAGTTTGGTGTTA CCCTGTCTGTAGAAAAATAATCAGT GG CAGGGGTTGTAACTATTGAAACTTTGTCTGTCTTTCTTCTTGTACGCCAAAGACCAATGCTATCTGCGATTAATCTTCCTAGCTTTCATGCAAAATTTGATTGTGGATGGTCAGCCAGTTTACATGCAATTTTGCCAAAAAA ] [+] EMBL BQ906164 [ tgGTATGAAACCTCC TGTATCTCGTGCCCTATTGCTTACCAGTCTTGCATAGCTCGCAAGTCCAACTCTAAGTTTACCACGTGGACAATCAGAATAAGCAACAGC TTATATTGAT GAGATTCTTTTACTGTCCTTGAGGAGGCAGATACCTCCCAGTGCCTCCTCAAT GGCTGTAAAATCATTCTTATGTT GACACAGCAAGTGTCTCGAAGATCCCCCGCTACGGTGTTT GGGCAGAGCAAAGTTGTAC AATATGTCTGCAAAGTATAGTTTGGTGTTACCCCTGTCTGTAGAAAAATAATCAGT GGCCAGGGGTTGTAACTATTGAAACTTTGTCTGTCTTTCTTCTTGTACGCC AAGACC ATGCTATCTGCGATTAATCTTCCTAaaaaaaaaa ] [+] EMBL AU164537 [ TTACTGTCCTTGAGGAGGCAGATACCTCCCAGTGCCTCCTCAAT GGCTGTAAAATCATTCTTATGTT GACACAGCAAGTGTCTCGAAGATCCCCCACTA GGTGTTT GGGCAGAGCAAAGTTGTAC AATATGTCTGCAAAGTATAGTTTGGTGTTA CCCTGTCTGTAGAAAAATAATCAGT GG CAGGGGTTGTAACTATTGAAACTTTGTCTGTCTTTCTTCTTGTACGCCAAAGACCAATGCTATCTGCGATTAATCTTCCTAaaaaa ] [+] EMBL AU182292 [ TATCTGCGATTAATCTTCCTAGCTTTCATGCAAAATTTGATTGTGGATGGTCAGCCAGTTTACATGCAATTTTGCCAGCAATCATGTCATGTTATGTGGAGAACATGTTAGTGCTATTGGTCTCAGCATTGGAATAACTGCAGTCAAGATACACTACAGGACGACCATTTTACTAGTGGTAAATTTAGAGTTTTGAACTAGGAACATCCGAACAGACGAGTATAAGACAGTATGACACCTAACTACTGCAGACACCCTTCACAATATCAAACCCGGGTCAACACATGAGACGGCAGGACAATAAAATCAGTGGTAATACTTAGAAAGTTACCTTCTGTTTCATACGTATCAAATCATACAAATTTTAAGACTGGCCAAATTGTATAAAAAGTTAGTAAATATCTATAACAAACGGTGGCGCTAATTAGCGCGTTGGGAGCAAAAA] consensusID : consensus_15932#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 532 fasta sequence [GCGCTAATCTAATCTACTTGGGGCAGTGGTAACAGGGGGAGGCCAACGCGGGGGAAACAGCTGACGCGCTCCGCTCCGTTCCGCTGCCGCCGTTGGCCGGCCGGGCGGTCGCTGTTGCTGACTTGACCAGAGA-CGAGCAGCAAGGGGGCAGTTGGATTGGA-TTAGAGGGTGCTTTTATATAGAGGAGCACGAGGAGGAGGAGGAGGAGGAGGGCCATCAAGCATATCCATCTCCGATTCACAGATTCTTTCTGGAGATCCATCATCCAGCGAGAGCGAGAGCGAGAGGGAGAGGGAGAGGGAAAGCCGCCACCGCCATGTTGGGGCATCTGGTTGGGCTGGTGAAGGTGCGGGTGGTGAGGGGCGTCAACCTCGCCGTCCGCGACCTCCGCTCCAGCGACCCCTACGTCATCGTCCGCATGGGCAAGCAGAAGTTGAAGACACGAGTCATAAAAAAGACTACCAATCCGGAGTGGAACGATGAACTCACCCTCTCGATTGAAGATCCAGCAGTTCCTGTAACAAGCTATTCC] [-] EMBL CB965646 [GCGCTAATCTGATCTACTTGGGCCAGTGGTTACAGGGGGAGTCCTACGCGGGGGAAACAGCTGACGCGCTCCGCTCCGTTCCGCTGCCGCCGTTGGCCGGCCGGTCGGTCGCTGTTGCTGACTTGACCAGAGA CGAGCAGCAAGGGGGCAGTTGGATTGGA TTAGAGGGTGCTTTTATATAGAGGAGCACGAGGAGGAGGAGGAGGAGGAGGGCCATCAAGCATATCCATCTCCGATTCACAGATTCTTTCTGGAGATCCATCATCCAGCGAGAGCGAGAGCGAGAGGGAGAGGGAGAGGGAAAGCCGCCACCGCCATGTTGGGGCATCTGGTTGGGCTGGTGAAGGTGCGGGTGGTGAGGGGCGTCAACCTCGCCGTCCGCGACCTCCGCTCCAGCGACCCCTACGTCATCGTCCGCATGGGCAAGCAGAAGTTGAAGACACGAGTCATAAAAAAGACTACCAATCCGGAGTGGAACGATGAACTCACCCTCTCGATTGAAGATCCAGCAGTTCCTGTAACAAGCTA ] [-] EMBL BU673546 [ CGCGAATCTAATCTACTTGGGGCAGTGGTAACAGGGGGAGGCCAACGCGGGGGAAACAGCTGACGCGCTCCGCTCCGTTCCGCTGCCGCCGTTGGCCGGCCGGGCGGTCGCTGTTGCTGACTTGACCAGAGA CGAGCAGCAAGGGGGCAGTTGGATTGGA TTAGAGGGTGCTTTTATATAGAGGAGCACGAGGAGGAGGAGGAGGAGGAGGGCCATCAAGCATATCCATCTCCGATTCACAGATTCTTTCTGGAGATCCATCATCCAGCGAGAGCGAGAGCGAGAGGGAGAGGGAGAGGGAAAGCCGCCACCGCCATGTTGGGGCATCTGGTTGGGCTGGTGAAGGTGCGGGTGGTGAGGGGCGTCAACCTCGCCGTCCGCGACCTCCGCTCCAGCGACCCCTACGTCATCGTCCGCATGGGCAAGCAGAAGTTGAAGACACGAGTCATAAAAAAGACTACCAATCCGGAGTGGAACGATGAACTCACCCTCTCGATTGAAGATCCAGCAGTTCCTATAGC AGCTATTCC] [-] EMBL CB964974 [ CGCTAATCTAATCTACTTGGGGCAGTGGTAACAGGGGGAGGCCAACGCGGGGGAAACAGCTGACGCGCTCCGCTCCGTTCCGCTGCCGCCGTTGGCCGGCCGGGCGGTCGCTGTTGCTGACTTGACCAGAGA CGAGCAGCAAGGGGGCAGTTGGATTGGA TTAGAGGGTGCTTTTATATAGAGGAGCACGAGGAGGAGGAGGAGGAGGAGGGCCATCAAGCATATCCATCTCCGATTCACAGATTCTTTCTGGAGATCCATCATCCAGCGAGAGCGAGAGCGAGAGGGAGAGGGAGAGGGAAAGCCGCCACCGCCATGTTGGGGCATCTGGTTGGGCTGGTGAAGGTGCGGGTGGTGAGGGGCGTCAACCTCGCCGTCCGCGACCTCCGCTCCAGCGACCCCTACGTCATCGTCCGCATGGGCAAGCAGAAGTTGAAGACACGAGTCATAAAAAAGACTACCAATCCGGAGTGGAACGATGAACTCACCCTCTCGATTGAAGATCCAGCAGTTCCTG ] [-] EMBL CB966692 [ CGCTAATCTAATCTACTTGGGGCAGTGGTAACAGGGGGAGGCCAACGCGGGGGAAACAGCTGACGCGCTCCGCTCCGTTCCGCTGCCGCCGTTGGCCGGCCGGGCGGTCGCTGTTGCTGACTTGACCAGAGA CGAGCAGCAAGGGGGCAGTTGGATTGGA TTAGAGGGTGCTTTTATATAGAGGAGCACGAGGAGGAGGAGGAGGAGGAGGGCCATCAAGCATATCCATCTCCGATTCACAGATTCTTTCTGGAGATCCATCATCCAGCGAGAGCGAGAGCGAGAGGGAGAGGGAGAGGGAAAGCCGCCACCGCCATGTTGGGGCATCTGGTTGGGCTGGTGAAGGTGCGGGTGGTGAGGGGCGTCAACCTCGCCGTCCGCGACCTCCGCTCCAGCGACCCCTACGTCATCGTCCGCATGGGCAAGCAGAAGTTGAAGACACGAGTCATAAAAAAGACTACCTATCCGGAGTGGAACGATGAACTCACCCTCTCGATTGAAGATCCAGCAGTT ] [-] EMBL CB967347 [ CGCTAATCTAATCTACTTGGGGCAGTGGTAACAGGGGGAGTCCAACGCGGGGGAAACAGCTGACGCGCTCCGCTCCGTTCCGCTGCCGCCGTTGGCCGGCCGGGCGGTCGCTGTTGCTGACTTGACCAGAGA CGAGCAGCAAGGGGGCAGTTGGATTGGA TTAGAGGGTGCTTTTATATAGAGGAGCACGAGGAGGAGGAGGAGGAGGAGGGCCATCAAGCATATCCATCTCCGATTCACAGATTCTTTCTGGAGATCCATCATCCAGCGAGAGCGAGAGCGAGAGGGAGAGGGAGAGGGAAAGCCGCCACCGCCATGTTGGGGCATCTGGTTGGGCTGGTGAAGGTGCGGGTGGTGAGGGGCGTCAACCTCGCCGTCCGCGACCTCCGCTCCAGCGACCCCTACGTCATCGTCCGCATGGGCAAGCAGAAGTTGAAGACACGAGTCATAAAAAAGACTACCAATCCGGAGTGGAACGATGAACTCACCCTCTCGATTGAAGATCCAGCAGTT ] [-] EMBL CB965781 [ CGCTAATCTAATCTACTTGGGGCAGTGGTAACAGGGGGAGGCCAACGCGGGGGAAACAGCTGACGCGCTCCGCTCCGTTCCGCTGCCGCCGTTGGCCGGCCGGCCGGTCGCTGTTGCTGACTTGACCAGAGA CGAGCAGCAAGGGGGCAGTTGGATTGGA TTAGAGGGTGCTTTTATATAGAGGAGCACGAGGAGGAGGAGGAGGAGGAGGGCCATCAAGCATATCCATCTCCGATTCACAGATTCTTTCTGGAGATCCATCATCCAGCGAGAGCGAGAGCGAGAGGGAGAGGGAGAGGGAAAGCCGCCACCGCCATGTTGGGGCATCTGGTTGGGCTGGTGAAGGTGCGGGTGGTGAGGGGCGTCAACCTCGCCGTCCGCGACCTCCGCTCCAGCGACCCCTACGTCATCGTCCGCATGGGCAAGCAGAAGTTGAAGACACGAGTCATAAAAAAGACTACCAATCCGGAGTGGAACGATGAACTCACCCTCTCGATTGAAGATCCAGCAGT ] [+] EMBL D42880 [ GGGAGGCCAACGCGGGGGAAACAGCTGACGCGCTCCGCTCCGTTCCGCTGCCGCCGTTGGCCGTCCGGGCGGTCGNTGTTGCTGACTTGACCAGAGATGGTGCTGCAAGGGGGCAGTTGGATTGGATTTAGAGGGTGCTTTTATATAGAGG ] consensusID : consensus_15932#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 197 fasta sequence [CTGTAGAAAAATAATCAGTGGCAGGGGTTGTAACTATTGAAACTTTGTCTGTCTTTCTTCTTGTACGCCAAAGACCAATGCTATCTGCGATTAATCTTCCTAGCTTTCATGCAAAATTTGATTGTGGATGGTCAGCCAGTTTACATGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CF331629 [CTGTAGAAAAATAATCAGTGGCAGGGGTTGTAACTATTGAAACTTTGTCTGTCTTTCTTCTTGTACGCCAAAGACCAATGCTATCTGCGATTAATCTTCCTAGCTTTCATGCAAAATTTGATTGTGGATGGTCAGCCAGTTTACATGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15932#0 TTTCTCAAGCGCTAATCTAATCTACTTGGGGCAGTGGTAACAGGGGGAGGCCAACGCGGG 60 consensus_15932#1 --------GCGCTAATCTAATCTACTTGGGGCAGTGGTAACAGGGGGAGGCCAACGCGGG 52 consensus_15932#2 -----------------------CTGTAGAAAAATAATCAGTGGCAGGGGTTGTAACTAT 37 * * * * * * ** * ** * consensus_15932#0 GGAAACAGCTGACGCGCTCCGCTCCGTTCCGCTGCCGCCGTTGGCCGGCCGGGCGGTCGC 120 consensus_15932#1 GGAAACAGCTGACGCGCTCCGCTCCGTTCCGCTGCCGCCGTTGGCCGGCCGGGCGGTCGC 112 consensus_15932#2 TGAAACT-TTGTCTGTCTTTCTTCTTGTACGCCAAAGACCAATGCTATCTG--CGATTAA 94 ***** ** * ** ** * *** * * ** * * ** * consensus_15932#0 TGTTGCTGACTT--GACCAGAGACGAGCAGCAAGGGGGCAGTTGGATTGGATTAGAGGGT 178 consensus_15932#1 TGTTGCTGACTT--GACCAGAGACGAGCAGCAAGGGGGCAGTTGGATTGGATTAGAGGGT 170 consensus_15932#2 TCTTCCTAGCTTTCATGCAAAATTTGATTGTGGATGGTCAGCCAGTTTACATGCAAAAAA 154 * ** ** *** ** * * ** *** * ** ** * consensus_15932#0 GCTTTTATATAGAGGAGCACGAGGAGGAGGAGGAGGAGG---GCCATCAAGCATATCCAT 235 consensus_15932#1 GCTTTTATATAGAGGAGCACGAGGAGGAGGAGGAGGAGGAGGGCCATCAAGCATATCCAT 230 consensus_15932#2 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA----------------- 197 * * * * * * * * * * * * consensus_15932#0 CTCCGATTCACAGATTCTTTCTGGAGATCCATCATCCAGCGAGAGCGAGAGCGAGAGGGA 295 consensus_15932#1 CTCCGATTCACAGATTCTTTCTGGAGATCCATCATCCAGCGAGAGCGAGAGCGAGAGGGA 290 consensus_15932#2 ------------------------------------------------------------ consensus_15932#0 GAGGAAGAGGGAAAGCCGCCACCGCCATGTTGGGGCATCTGGTTGGGCTGGTGAAGGTGC 355 consensus_15932#1 GAGGGAGAGGGAAAGCCGCCACCGCCATGTTGGGGCATCTGGTTGGGCTGGTGAAGGTGC 350 consensus_15932#2 ------------------------------------------------------------ consensus_15932#0 GGGTGGTGAGGGGCGTCAACCTCGCCGTCCGCGACCTCCGCTCCAGCGACCCCTACGTCA 415 consensus_15932#1 GGGTGGTGAGGGGCGTCAACCTCGCCGTCCGCGACCTCCGCTCCAGCGACCCCTACGTCA 410 consensus_15932#2 ------------------------------------------------------------ consensus_15932#0 TCGTCCGCATGGGCAAGCAGAAGTTGAAGACACGAGTCATAAAAAAGACTACCAATCCGG 475 consensus_15932#1 TCGTCCGCATGGGCAAGCAGAAGTTGAAGACACGAGTCATAAAAAAGACTACCAATCCGG 470 consensus_15932#2 ------------------------------------------------------------ consensus_15932#0 AGTGGAACGATGAACTCACCCTCTCGATTGAAGATCCAGCAGTTCCTGTTAGACTGGAAG 535 consensus_15932#1 AGTGGAACGATGAACTCACCCTCTCGATTGAAGATCCAGCAGTTCCTGT--AACAAGCTA 528 consensus_15932#2 ------------------------------------------------------------ consensus_15932#0 TGTATGACAAAGACACATTCATCGATGATGCAATGGGCAATGCGGAGCTGGACATCCGCC 595 consensus_15932#1 TTCC-------------------------------------------------------- 532 consensus_15932#2 ------------------------------------------------------------ consensus_15932#0 CATTGGTGGAGGTTGTCAAGATGAAGATTGAGGGTGTTGCTGACAACACGGTTGTGAAGA 655 consensus_15932#1 ------------------------------------------------------------ consensus_15932#2 ------------------------------------------------------------ consensus_15932#0 AAGTGGTACCCAATAGACAGAACTGCCTAGCTGAAGAGAGCACGATATATATCTCTGAGG 715 consensus_15932#1 ------------------------------------------------------------ consensus_15932#2 ------------------------------------------------------------ consensus_15932#0 GGAAGGTGAAGCAAGACGTGGTTCTCAGACTAAGGGATGTGGAATGCGGGGAAATTGAGC 775 consensus_15932#1 ------------------------------------------------------------ consensus_15932#2 ------------------------------------------------------------ consensus_15932#0 TCCAGCTTCAGTGGGTCGACATCCCAGGTTCTAAGGGTGTATGAACTCTGTACTCTGCCT 835 consensus_15932#1 ------------------------------------------------------------ consensus_15932#2 ------------------------------------------------------------ consensus_15932#0 ATTGCTTACAGTCTTGCATAGCTCGCAAGTCCAACTCTAAGTTTATCAGTGGACAATCAA 895 consensus_15932#1 ------------------------------------------------------------ consensus_15932#2 ------------------------------------------------------------ consensus_15932#0 ATAAGCAACAGCTTATATTGATGAGATTCTTTTACTGTCCTTGAGGAGGCAGATACCTCC 955 consensus_15932#1 ------------------------------------------------------------ consensus_15932#2 ------------------------------------------------------------ consensus_15932#0 CAGTGCCTCCTCAATGGCTGTAAAATCATTCTTATGTTGACACAGCAAGTGTCTCGAAGA 1015 consensus_15932#1 ------------------------------------------------------------ consensus_15932#2 ------------------------------------------------------------ consensus_15932#0 TCCCCCACTAGGTGTTTGGGCAGAGCAAAGTTGTACAATATGTCTGCAAAGTATAGTTTG 1075 consensus_15932#1 ------------------------------------------------------------ consensus_15932#2 ------------------------------------------------------------ consensus_15932#0 GTGTTACCCTGTCTGTAGAAAAATAATCAGTGGCAGGGGTTGTAACTATTGAAACTTTGT 1135 consensus_15932#1 ------------------------------------------------------------ consensus_15932#2 ------------------------------------------------------------ consensus_15932#0 CTGTCTTTCTTCTTGTACGCCAAAGACCAATGCTATCTGCGATTAATCTTCCTAGCTTTC 1195 consensus_15932#1 ------------------------------------------------------------ consensus_15932#2 ------------------------------------------------------------ consensus_15932#0 ATGCAAAATTTGATTGTGGATGGTCAGCCAGTTTACATGCAATTTTGCCAAAAAAAATGT 1255 consensus_15932#1 ------------------------------------------------------------ consensus_15932#2 ------------------------------------------------------------ consensus_15932#0 CATGTTATGTGGAGAACATGTTAGTGCTATTGGTCTCAGCATTGGAATAACTGCAGTCAA 1315 consensus_15932#1 ------------------------------------------------------------ consensus_15932#2 ------------------------------------------------------------ consensus_15932#0 GATACACTACAGGACGACCATTTTACTAGTGGTAAATTTAGAGTTTTGAACTAGGAACAT 1375 consensus_15932#1 ------------------------------------------------------------ consensus_15932#2 ------------------------------------------------------------ consensus_15932#0 CCGAACAGACGAGTATAAGACAGTATGACACCTAACTACTGCAGACACCCTTCACAATAT 1435 consensus_15932#1 ------------------------------------------------------------ consensus_15932#2 ------------------------------------------------------------ consensus_15932#0 CAAACCCGGGTCAACACATGAGACGGCAGGACAATAAAATCAGTGGTAATACTTAGAAAG 1495 consensus_15932#1 ------------------------------------------------------------ consensus_15932#2 ------------------------------------------------------------ consensus_15932#0 TTACCTTCTGTTTCATACGTATCAAATCATACAAATTTTAAGACTGGCCAAATTGTATAA 1555 consensus_15932#1 ------------------------------------------------------------ consensus_15932#2 ------------------------------------------------------------ consensus_15932#0 AAAGTTAGTAAATATCTATAACAAACGGTGGCGCTAATTAGCGCGTTGGGAGCAAAAA 1613 consensus_15932#1 ---------------------------------------------------------- consensus_15932#2 ---------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||