These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15933#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 23 consensus length = 1192 fasta sequence [TCGCCCACCTCTCTCTCTCTCTCTCCCCTGGTCTCTCGCTCTCTTCGCTCGCGGCGGCTTCTCCGCCTCCGCCTCCGCCGCCCTCTCCTCCTCTCGCCTCGCCGCCGGC-GCCGCCAGCCACCGC-GCGGGTCGGGC-GGGCC-GTATCTTCCTTTCTGTTCCGATGGCTTCCGCGAAGGTGGAGAACCGCGGCGGCGGTGG-GTTCGGTTCGAAGAGGTCACGCAACGACGTGTCTGT-AAGGGAGGGGGACTGGACTTGTCCTCAGTGTGGTAATGTCAACTTCAGTTTTAGAAATGTTTGCAACCGCGGAGCCTGTGGTGCACCCCGTCCATCACCGAGTCTAAGCCCAAGAGTGCCACCTCCTCCTGCTGCTGGATATGATCGGCCACATCTTGGATATGATCGGCCACATCTGTTTTATGGTAGTGCTGGCACCCCACCTCCTATTCCTCTTGGATCTGGTAGCTATGGTGCCCCCTATCCACA-TCTTGGCTTGCGGTATGGATA-TGGTCCACCAGTAGGACCTCCTGCTTCATATGGCC-TTTTTTCTTCTTAT-GGTCAACCTGGA-CCAATGGGC-AGTCCGATGGGAGGCATGGGCTATGGCCCTGG-ACCTGAGCTAGGCCGATATGGTTATGGTTTTAGAGGATCTCCAATGCCGGTTTCTAGCCCA-TGGTCTGGTGGAGCATTAGTGGAAAATAATGACAGCTCTGCTTCACGCA-AGCGTCG-TGGAGG-CCCA-GATGGAATGGCTGAGAATGACTGGATCTGCCCAAAGTGTGAGAATGTCAACTTTTCCTTCAGAAACAGTTG-CAATATGAAGAAATGTGGAGCTCCA-AGGCCA-AG-CCCTGGATCTAATGCTACCCCA-TGTCGCAAAGACA-AGGACGCTCCGGAAGGGAGCTGGACCTGCCCGGAGT-GCAACAACCTGAACTACCCT-TT-CCGCACGGCGTGCAATCGGAAAGGCTGC-GGAAGCAGCAGGCCGGCAGCGGCCA-CGGCGAACTAGGACCCTACTAACTTTGCGCCGGCGATTGGGGG-CAGAGAGAGTATTGTTGTATCCTAGCTATATACAAGTTAATTTAAACTGTAAACGGCT-CAAATATATTTTCTT-GTGGCCTGAGATTCGTTGTGCCTGATTTTTAAATTCGCCTTCTGAATTTCCT-TTACGATTTATAGAGCTTTTATATACATTGGATTAAAAAAA] [+] EMBL AU093296 [TCGCCCACCTCTCTCTCTCTCTCTCCCCTGGTCTCTCGCTCTCTTCGCTCGCGGCGGCTTCTCCGCCTCCGCCTCCGCCGCCCTCTCCTCCTCTCGCCTCGCCGCCGGC GCCGCCAGCCACCGC GCGGGTCGGGC GGGCC GTATCTTCCTTTCTGTTCCGATGGCTTCCGCGAAGGTGGAGAACCGCGGCGGCGGTGG GTTCGGTTCGAAGAGGTCACGCAACGACGTGTCTGT AAGGGAGGGGGACTGGACTTGTCCTCAGTGTGGTAATGTCAACTTCAGTTTTAGAAATGTTTGCAACCGCGGA CCTGTGGTGCACCCCGTCCATCACCGAGTCTAAGCCCAAGAGTGCCACCTCCTCCTGCTGCTGGATATGATCGGCCACATCTTGGATATGATCGGNCACATCTGTTTTATGGTAGTGCTGGCACCCCACCTCCTATTCCTCTTGGATCTGGTAGCTATGGTGCCCCCTATCCACA TCTTGGCTTGCGGTATGGATA TGGTCCACCAGTAGGACCTCCTGCTTCATATGGCC TTTTTTCTTCTTATGGGTCAACCTGGA NCAATGGGCAATTCCGATNGGAAGCA ] [+] EMBL AU093844 [ nGCCCACCTNTNTNTCTCTCTNTCCCCTGGTCTCTCGCTCTCTTCGCTCGCGGCGGCTTCTCCGCCTCCNCCTCCGCCGCCCTCTCCTCCTCTNGCCTCGCCGCCGG GCCGCCAGCNACCGC GCGGGTCGGGC GGGCC GTATCTTCCTTTCTGTTCCNATGGCTTCCGCNAAGGTGGAGAACCGCGGCGGCGGTGGNGTTCGGTTCGAAGAGGTCACGCAACGACGTGTCTGTAAAGGAAGGGGGACTGGACTTNTCCTCAGTGTGGTAATGTCAACTTCAGTTTTAGAAATGTTTGCAACCGCGGAGCTTGTGGTGCANCCCGTCCATCACCGAGTCTAAAGCCAAGAGTGCCACCTTCTCCTGCTNCTGGATATGATC ] [+] EMBL AK101803 [ TCGCTCTCTTCGCTCGCGGCGGCTTCTCCGCCTCCGCCTCCGCCGCCCTCTCCTCCTCTCGCCTCGCCGCCGGC GCCGCCAGCCACCGC GCGGGTCGGGC GGGCC GTATCTTCCTTTCTGTTCCGATGGCTTCCGCGAAGGTGGAGAACCGCGGCGGCGGTGG GTTCGGTTCGAAGAGGTCACGCAACGACGTGTCTGT AAGGGAGGGGGACTGGACTTGTCCTCAGTGTGGTAATGTCAACTTCAGTTTTAGAAATGTTTGCAACCGCGGAGCCTGTGGTGCACCCCGTCCATCACCGAGTCTAAGCCCAAGAGTGCCACCTCCTCCTGCTGCTGGATATGATCGGCCACATCTTGGATATGATCGGCCACATCTGTTTTATGGTAGTGCTGGCACCCCACCTCCTATTCCTCTTGGATCTGGTAGCTATGGTGCCCCCTATCCACA TCTTGGCTTGCGGTATGGATA TGGTCCACCAGTAGGACCTCCTGCTTCATATGGCC TTTTTTCTTCTTAT GGTCAACCTGGA CCAATGGGC AGTCCGATGGGAGGCATGGGCTATGGCCCTGG ACCTGAGCTAGGCCGATATGGTTATGGTTTTAGAGGATCTCCAATGCCGGTTTCTAGCCCA TGGTCTGGTGGAGCATTAGTGGAAAATAATGACAGCTCTGCTTCACGCA AGCGTCG TGGAGG CCCA GATGGAATGGCTGAGAATGACTGGATCTGCCCAAAGTGTGAGAATGTCAACTTTTCCTTCAGAAACAGTTG CAATATGAAGAAATGTGGAGCTCCA AGGCCA AG CCCTGGATCTAATGCTACCCCA TGTCGCAAAGACA AGGACGCTCCGGAAGGGAGCTGGACCTGCCCGGAGT GCAACAACCTGAACTACCCT TT CCGCACGGCGTGCAATCGGAAAGGCTGC GGAAGCAGCAGGCCGGCAGCGGCCA CGGCGAACTAGGACCCTACTAACTTTGCGCCGGCGATTGGGGG CAGATAGAGTATTGTTGTATCCTAGCTATATACAAGTTAATTTAAACTGTAAACGGCT CAAATATATTTTCTT GTGGCCTGAGATTCGTTGTGCCTGATTTTTAAATTCGCCTTCTGAATTTCCT TTACGATTTATAGAGCTTTTATAT ] [+] EMBL AK061330 [ CGCTCTCTTCGCTCGCGGCGGCTTCTCCGCCTCCGCCTCCGCCGCCCTCTCCTCCTCTCGCCTCGCCGCCGGC GCCGCCAGCCACCGC GCGGGTCGGGC GGGCC GTATCTTCCTTTCTGTTCCGATGGCTTCCGCGAAGGTGGAGAACCGCGGCGGCGGTGG GTTCGGTTCGAAGAGGTCACGCAACGACGTGTCTGT AAGGGAGGGGGACTGGACTTGTCCTCAGTGTGGTAATGTCAACTTCAGTTTTAGAAATGTTTGCAACCGCGGAGCCTGTGGTGCACCCCGTCCATCACCGAGTCTAAGCCCAAGAGTGCCACCTCCTCCTGCTGCTGGATATGATCGGCCACATCTTGGATATGATCGGCCACATCTGTTTTATGGTAGTGCTGGCACCCCACCTCCTATTCCTCTTGGATCTGGTAGCTATGGTGCCCCCTATCCACA TCTTGGCTTGCGGTATGGATA TGGTCCACCAGTAGGACCTCCTGCTTCATATGGCCTTTTTTTCTTCTTAT GGTCAACCTGGA CCAATGGGC AGTCCGATGGGAGGCATGGGCTATGGCCCTGG ACCTGAGCTAGGCCGATATGGTTATGGTTTTAGAGGATCTCCAATGCCGGTTTCTAGCCCA TGGTCTGGTGGAGCATTAGTGGAAAATAATGACAGCTCTGCTTCACGCA AGCGTCG TGGAGG CCCA GATGGAATGGCTGAGAATGACTGGATCTGCCCAAAGTGTGAGAATGTCAACTTTTCCTTCAGAAACAGTTG CAATATGAAGAAATGTGGAGCTCCA AGGCCA AG CCCTGGATCTAATGCTACCCCA TGTCGCAAAGACA AGGACGCTCCGGAAGGGAGCTGGACCTGCCCGGAGT GCAACAACCTGAACTACCCT TT CCGCACGGCGTGCAATCGGAAAGGCTGC GGAAGCAGCAGGCCGGCAGCGGCCA CGGCGAACTAGGACCCTACTAACTTTGCGCCGGCGATTGGGGG CAGAGAGAGTATTGTTGTATCCTAGCTATATACAAGTTAATTTAAACTGTAAACGGCT CAAATATATTT ] [+] EMBL CB663419 [ TTCGCTCGCGGCGGCTTCTCCGCCTCCGCCTCCGCCGCCCTCTCCTCCTCTCGCCTCGCCGCCGGC GCCGCCAGCCACCGC GCGGGTCGGGC GGGCC GTATCTTCCTTTCTGTTCCGATGGCTTCCGCGAAGGTGGAGAACCGCGGCGGCGGTGG GTTCGGTTCGAAGAGGTCACGCAACGACGTGTCTGT AAGGGAGGGGGACTGGACTTGTCCTCAGTGTGGTAATGTCAACTTCAGTTTTAGAAATGTTTGCAACCGCGGAGCCTGTGGTGCACCCCGTCCATCACCGAGTCTAAGCCCAAGAGTGCCACCTCCTCCTGCTGCTGGATATGATCGGCCACATCTTGGATATGATCGGCCACATCTGTTTTATGGTAGTGCTGGCACCCCACCTCCTATTCCTCTTGGATCTGGTAGCTATGGTGCCCCCTATCCACA TCTTGGCTTGCGGTATGGATA TGGTCCACCAGTAGGACCTCCTGCTTCATATGGCT TTTTTTCTTCTTAT GGTCAACCTGGA CCAATGGGC AGTCCGATGGGAGGCATGGGCTATG ] [+] EMBL CA753126 [ TCGCTCGCGGCGGCTTCTCCGCCTCCGCCTCCGCCGCCCTCTTCTCCTCTCGCCTCGCCGCCGGC GCCGCCAGCCACCGC GCGGGTCGGGC GGGCC GTATCTTCCTTTCTGTTCCGATGGCTTCTGCGAAGGTGGAGAACCGCGGCGGCGGTGG GTTCGGTTCGAAGAGGTCACGCAACGACGTGTCTGT AAGGGAGGGGGACTGGACTTGTCCTCAGTGTGGTAATGTCAACTTC ] [+] EMBL AU183284 [ CGCTCGCGGAGGCTTCTCCGCCTCCGCCTCCGCCGCCCTCTCCTCCTCTCGCCTCGCCGCCGGCAGCCGCCAGCCACCGCAGCGGGTCGGGCAGGGCCAGTATCTTCCTTTCTGTTCCGATGGCTTCCGCGAAGGTGGAGAACCGCGGCGGCGGTGG GTTCGGTTCGAAGAGGTCACGCAACGACGTGTCTGT AAGGGAGGGGGACTGGACTTGTCCTCAGTGTGGTAATGTCAACTTCAGTTTTAGAAATGTTTGCAACCGCGGAGCCTGTGGTGCACCCCGTCCATCACCGAGTCTAAGCCCAAGAGTGCCACCTCCTCCTGCTGCTGGATATGATCGGCCACATCTTGGATATGATCGGCCACATCTGTTTTATGGTAGTGCTGGCACCCCACCTCCTATTCCTCTTGGATCTGGTAGCTATGGT ] [+] EMBL CB654618 [ CCTCCGCCGCCCTCTCCTCCTCTCGCCTCGCCGCCGGC GCCGCCAGCCACCGC GCGGGTCGGGC GGGCC GTATCTTCCTTTCTGTTCCGATGGCTTCCGCGAAGGTGGAGAACCGCGGCGGCGGTGG GTTCGGTTCGAAGAGGTCACGCAACGACGTGTCTGT AAGGGAGGGGGACTGGACTTGTCCTCAGTGTGGTAATGTCAACTTCAGTTTTAGAAATGTTTGCAACCGCGGAGCCTGTGGTGCACCCCGTCCATCACCGAGTCTAAGCCCAAGAGTGCCACCTCCTCCTGCTGCTGGATATGATCGGCCACATCTTGGATATGATCGGCCACATCTGTTTTATGGTAGTGCTGGCACCCCACCTCCTATTCCTCTTGGATCTGGTAGCTATGGTGCCCCCTATCCACA TCTTGGCTTGCGGTATGGATA TGGTCCACCAGTAGGACCTCCTGCTTCATATGGCC TTTTTTCTTCTTAT GGTCAACCTGGA CCAATGGGC AGTCCGATGGGAGGCATGGGCTATGGCCCTGG ACCTGAGCTAGGCCGATATGGTTATGGTTTTAGAGGATCTCCAATGCCGGTTTCTAGCCCA TGGTCTGGTGGAGCATTAGTGGAAAATAATGACAGCTCTGCTTCACGCA AGCGTCG TGGAGG CCCA GATGGAATGGCTGAGAATGACTGGATCTGCCCAAAGTGTGAGAATGTCAACTTTTCCTTCAGAAACAGTTG CAATATGAAGAAATGTGGAGCTCCA AGGCCA AG CCCTGGATCTAATGC ] [+] EMBL C97606 [ CGTCCATCA CGGGTTTAAGCCCAAGA TGCCACTTCTTCCTGCTGCTGGATATGATCGGCCACATCTNGGATATGATCGNCCACATCTGTTTTATGGTAGTGCTGGCACCCAACTTCCTATTCCTCTTGGATCTGGTAGCTATGGTGCCCCCTATCCACA TCTTGGCTTGCGGTATGGATA TGGTCCACCAGTAGGACCTCCTGCTTCATATGGCC TTTTTTCTTCTTAT GGTCAACCTGGA CCAATGGGC AGTCCGATGGGAGGCATGGGCTATGGCCCTGG ACCTGAGCTAGGCCGATATGGTTATGGTTTTAGAGGATCTCCAATGCCGGTTTCTAGCCCA TGGTCTGGTGGAGCATTAGTGGAAAATAATGACAGCTCTGCTTCACGCA AGCGTCG TGGAGG CCCA GATGGAATGGCTGAGAATGACTGGATCTGCCCAAAGTGTGAGAATGTCAACTTTTCCTTCAGAAACAGTTG CAATATGAAGAAATGTGGAGCTCCA AGGCCA AG CCCTGGATCTAATGCTACCCCA TGTCGCAAAGACA AGGACGCTCCGGAAGGGAGCTGGACCTGCCCGGAGT GCAACAACCTGAACTACCCT TT CC CACGGCGTGCAATCGGAAAGGCTGC GGAAGCAGCAGGCCGGCAGCGGCCA CGGCGAACTAGGACCCTACTAACTTTGCGCCGGCGATTGGGGG CAGAGAGAGTATTGTTGTATCCTAGCTATATACAAGTTAATTTAAACTGTAAACGGCT CAAATATATTTTCTT GTGGCCTGAGATTCGTTGTGCCTGATTTTTAAATTCGCCTTCTGAATTTCCT TTAaaaaaa ] [-] EMBL CB662513 [ GCCACCTCCTCCTGCTGCTGGATATGATCGGCCACATCTTGGATATGATCGGCCACATCTGTTTTATGGTAGTGCTGGCACCCCACCTCCTATTCCTCTTGGATCTGGTAGCTATGGTGCCCCCTATCCACA TCTTGGCTTGCGGTATGGATA TGGTCCACCAGTAGGACCTCCTGCTTCATATGGCC TTTTTTCTTCTTAT GGTCAACCTGGA CCAATGGGC AGTCCGATGGGAGGCATGGGCTATGGCCCTGG ACCTGAGCTAGGCCGATATGGTTATGGTTTTAGAGGATCTCCAATGCCGGTTTCTAGCCCA TGGTCTGGTGGAGCATTAGTGGAAAATAATGACAGCTCTGCTTCACGCA AGCGTCG TGGAGG CCCA GATGGAATGGCTGAGAATGACTGGATCTGCCCAAAGTGTGAGAATGTCAACTTTTCCTTCAGAAACAGTTG CAATATGAAGAAATGTGGAGCTCCA AGGCCA AG CCCTGGATCTAATGCTACCCCA TGTCGCAAAGACA AGGACGCTCCGGAAGGGAGCTGGACCTGCCCGGAGT GCAACAACCTGAACTACCCT TT CCGCACGGCGTGCAATCGGAAAGGCTGC GGAAGCAGCAGGCCGGCAGCGGCCA CGGCGAACTAGGACCCTACTAACTTTGCGCCGGCGATTGGGGG CAGAGAGAGTATTGTTGTATCCTAGCTATATACAAGTTAATTTAAACTGTAAACGGCT CAAATATATTTTCTT GTGGCCTGAGATTCGTTGTGCCTGATTTTTAAATTCGCCTTCTGAATTTCCTGGTACGATTTATAGAGCTTTTATATACATTGGAct ] [-] EMBL CB664743 [ GCCACCTCCTCCTGCTGCTGGATATGATCGGCCACATCTTGGATATGATCGGCCACATCTGTTTTATGGTAGTGCTGGCACCCCACCTCCTATTCCTCTTGGATCTGGTAGCTATGGTGCCCCCTATCCACA TCTTGGCTTGCGGTATGGATA TGGTCCACCAGTAGGACCTCCTGCTTCATATGGCC TTTTTTCTTCTTAT GGTCAACCTGGA CCAATGGGC AGTCCGATGGGAGGCATGGGCTATGGCCCTGG ACCTGAGCTAGGCCGATATGGTTATGGTTTTAGAGGATCTCCAATGCCGGTTTCTAGCCCA TGGTCTGGTGGAGCATTAGTGGAAAATAATGACAGCTCTGCTTCACGCA AGCGTCG TGGAGG CCCA GATGGAATGGCTGAGAATGACTGGATCTGCCCAAAGTGTGAGAATGTCAACTTTTCCTTCAGAAACAGTTG CAATATGAAGAAATGTGGAGCTCCA AGGCCA AG CCCTGGATTTAATGCTACCCCA TGTCGCAAAGACA AGGACGCTCCGGAAGGGAGCTGGACCTGCCCGGAGT GCAACAACCTGAACTACCCT TT CCGCACGGCGTGCAATCGGAAAGGCTGC GGAAGCAGCAGGCCGGCAGCGGCCA CGGCGAACTAGGACCCTACTAACTTTGCGCCGGCGATTGGGGG CAGAGAGAGTATTGTTGTATCCTAGCTATATACAAGTTAATTTAAACTGTAAACGGCT CAAATATATTTTCTT GTGGCCTGAGATTCGTTGTGCCTGATTTTTAAATTCGCCTTCTGAATTTCCT TTACGATTTATAGAGCTTTTATATA ] [-] EMBL CB654619 [ ATCGGCCACATCTTGGATATGATCGGCCACATCTGTTTTATGGTAGTGCTGGCACCCCACCTCCTATTCCTCTTGGATCTGGTAGCTATGGTGCCCCCTATCCACA TCTTGGCTTGCGGTATGGATA TGGTCCACCAGTAGGACCTCCTGCTTCATATGGCC TTTTTTCTTCTTAT GGTCAACCTGGA CCAATGGGC AGTCCGATGGGAGGCATGGGCTATGGCCCTGG ACCTGAGCTAGGCCGATATGGTTATGGTTTTAGAGGATCTCCAATGCCGGTTTCTAGCCCA TGGTCTGGTGGAGCATTAGTGGAAAATAATGACAGCTCTGCTTCACGCA AGCGTCG TGGAGG CCCA GATGGAATGGCTGAGAATGACTGGATCTGCCCAAAGTGTGAGAATGTCAACTTTTCCTTCAGAAACAGTTG CAATATGAAGAAATGTGGAGCTCCA AGGCCA AG CCCTGGATCTAATGCTACCCCA TGTCGCAAAGACA AGGACGCTCCGGAAGGGAGCTGGACCTGCCCGGAGT GCAACAACCTGAACTACCCT TT CCGCACGGCGTGCAATCGGAAAGGCTGC GGAAGCAGCAGGCCGGCAGCGGCCA CGGCGAACTAGGACCCTACTAACTTTGCGCCGGCGATTGGGGG CAGAGAGAGTATTGTTGTATCCTAGCTATATACAAGTTAATTTAAACTGTAAACGGCT CAA ] [-] EMBL CB662514 [ GCCACATCTTGGATATGATCGGCCACATCTGTTTTATGGTAGTGCTGGCACCCCACCTCCTATTCCTCTTGGATCTGGTAGCTATGGTGCCCCCTATCCACA TCTTGGCTTGCGGTATGGATA TGGTCCACCAGTAGGACCTCCTGCTTCATATGGCC TTTTTTCTTCTTAT GGTCAACCTGGA CCAATGGGC AGTCCGATGGGAGGCATGGGCTATGGCCCTGG ACCTGAGCTAGGCCGATATGGTTATGGTTTTAGAGGATCTCCAATGCCGGTTTCTAGCCCA TGGTCTGGTGGAGCATTAGTGGAAAATAATGACAGCTCTGCTTCACGCA AGCGTCG TGGAGG CCCA GATGGAATGGCTGAGAATGACTGGATCTGCCCAAAGTGTGAGAATGTCAACTTTTCCTTCAGAAACAGTTG CAATATGAAGAAATGTGGAGCTCCA AGGCCA AG CCCTGGATCTAATGCTACCCCA TGTCGCAAAGACA AGGACGCTCCGGAAGGGAGCTGGACCTGCCCGGAGT GCAACAACCTGAACTACCCT TT CCGCACGGCGTGCAATCGGAAAGGCTGC GGAAGCAGCAGGCCGGCAGCGGCCA CGGCGAACTAGGACCCTACTAACTTTGCGCCGGCGATTGGGGG CAGAGAGAGTATTGTTGTATCCTAGCTATATACAAGTTAATTTAAACTGTAAACGGCT CAAATATATTTTCTT GTGGCCTGAGATTCGTTGTGCCTGATTTTTAAATTCGCCTTCTGAATTTCAT GTACGATTTATAGAGCTTTTATATACATTGG ] [+] EMBL AU093845 [ CCTTTCCAAANTTTTGGCTTGCGGTATGGATANTGGTCCACCANTAGGACTTCCTGCTTCATATGGCC TTTTTTCTTCTTAT GGTCAACCTGGACCCAATGGGC AGTCCGATGGGAGGCATGGGCTATGGCCCTGG ACCTGAGCTAGGCCGATATGGTTATGGTTTTAGAGGATCTCCAATGCCGGTTTCTAGCCCA TGGTCTGGTGGAGCATTAGTGGAAAATAATGACAGCTCTGCTTCACGCA AGCGTCG TGGAGG CCCA GATGGAATGGCTGAGAATGACTGGATCTGCCCAAAGTGTGAGAATGTCAACTTTTCCTTCAGAAACAGTTG CAATATGAAGAAATGTGGAGCTCCA AGGCCA AG CCCTGGATCTAATGCTACCCCA TGTCGCAAAGACA AGGACGCTCCGGAAGGGAGCTGGACCTGCCCGGAGT GCAACAACCTGAACTACCCT TTNCCGCACGGCGTGCAATCGGAAAGGCTGC GGAAGCAGCAGGCCGGCAGCGGCCA CGGCGAACTAGGACCCTACTAACTTTGCGCCGGCGATTGGGGG CAGAGAGAGTATTGTTGTATCCTAGCTATATACAAGTTAATTTAAACTGTAAACGGCT CAAATATATTTTCTT GTGGCCTGAGATTCGTTGTGCCTGATTTTTAAATTCGCCTTCTGAATTTCCT TTACGAaaaaa ] [+] EMBL BI798584 [ CCTTGGCACCTGAGCTAGCCCGATATGGTTAT GTTTTAGAGGATCTCCAATGCCGGTTTCTAGCCCACTGGTCTGGTGGAGCATTAGTGGAAAATAATGACAGCTCTGCTTCACGCA AGCGTCG TGGAGG CCCA GATGGAATGGCTGAGAATGACTGGATCTGCCCCAAGTGTGAGAATGTCAACTTTTCCTTCAGAAACAGTTG CAATATGAAGAAATGTGGAGCTCCA AGGCCA AG CCCTGGATCTAATGCTACCCCA TGTCGCAAAGACA AGGACGCTCCGGAAGGGAGCTGGACCTGCCCGGAGT GCAACAACCTGAACTACCCT TT CCGCACGGCGTGCAATCGGAAAGGCTGC GGAAGCAGCAGGCCGGCAGCGGCCA CGGCGAACTAGGACCCTACTAACTTTGCGCCGGCGATTGGGGG CAGAGAGAGTATTGTTGTATCCTAGCTATATACAAGTTAATTTAAACTGTAAACGGCT CAAATATATTTTCTT GTGGCCTGAaaaaaaaaa ] [+] EMBL BQ908947 [ CCCATGCCGGTTTCTAGCCCACTGGTCTGGTGGAGCATTAGTGGAAAATAATGACAGCTCTGCTTCACGCACAGCGTCG TGGAGG CCCACGATGGAATGGCTGAGAATGACTGGATCTGCCCCAAGTGTGAGAATGTCAACTTTTCCTTCAGAAACNGTTGCCAATATGAAGAAATGTGGAGCTCCA AGGCCANAGCCCCTGGATCTAATGCTACCCCA TGTCGCNAAGACACAGGACGCTCCGGAAGGGAGCTGGACCTGCCCGGAGT GCAACAACCTGAACTACCCT TT CCGCACGGCGTGCAATCGGAAAGGCTGC GGAAGCAGCAGGCCGGCAGCGGCCACCGGCGAACTAGGACCCTACTAACTTTGCG CGGCGATTGGGGC CAGAGAGAGTATTGTTGTATCCTAGCTATATACAAGTTAATTTAAACTGTAAACGGCT CAAATATATTTTCTTCGTGGCCTGAaaaaaaaaa ] [+] EMBL BI808352 [ ACAGCTCTGCTTCACGCACAGCGTCGCTGGAGGCCCCA GATGGAATGGCTGAGAATGACTGGATCTGCCCCAAGTGTGAGAATGTCCACTTTTCCTTCAGAAACCGTTG CCATATGAAGAAATGTGGAGCTCCACAGGCCACAGCCCCTGGATCTAATGCTACCCCACTGTCGCCAAGACACAGGACGCTCCGGAAGGGAGCTGGACCTGCCCGGAGT GCAACAACCTGAACTACCCT TT CCGCACGGCGTGCAATCGGAAAGGCTGC GGAAGCAGCAGGCCGGCAGCGGCCACCGGCGAACTAGGACCCTACTAACTTTGCGCCGGCGATTGGGGGCCAGAGAGAGTATTGTTGTATCCTAGCTATATACCAGTTAATTTAAACTGTAAACGGCTCCAAATATATTTTCTT GTGGCCTGAaaaaaaaaa ] [+] EMBL AY072931 [ CTGCTTCACGCA AGCGTCG TGGAGG CCCA GATGGAATGGCTGAGAATGACTGGATCTGCCCAAAGTGTGAGAATGTCAACTTTTCCTTCAGAAACAGTTG CAATATGAAGAAATGTGGAGCTCCA AGGCCA AG CCCTGGATCTAATGCTACCCCA TGTCGCAAAGACA AGGACGCTCCGGAAGGGAGCTGGACCTGCCCGGAGT GCAACAACCTGAACTACCCT TT CCGCACGGCGTGCAATCGGAAAGGCTGC GGAAGCAGCAGGCCGGCAGCGGCCA CGGCGAACTAGGACCCTACTAACTTTGCGCCGGCGATTGGGGG CAGAGAGAGTATTGTTGTATCCTAGCTATATACAAGTTAATTTAAACTGTAAACGGCT CAAATATATTTTCTT GTGGCCTGAGATTCGTTGTGCCTGATTTTTAAATTCGCCTTCTGAATTTCCT TTACGATTTATAGAGCTTTTATATACATTGGATTAAAAAAA] [+] EMBL AU031146 [ GCA AGCGTCG TGGAGG CCCA GATGGAATGGCTGAGAATGACTGGATCTNCCCAAAGTGTGAGAATGTCAACTTTTCCTTCAGAAACAGTTG CAATNTGAAGAAATGTGGAGCTCCA AGGCCA AG CCCTGGATCTAATGCTACCCCA TGTCGCAAAGACA AGGACGCTCCGGAAGGGAGCTGGACCTGCCCGGAGT GCAACAACCTGAACTACCCT TT CCGCACGGCGTGCAATCGGAAAGGCTGC GGAAGCAGCAGGCCGGCAGCGGCCA CGGCGAACTAGGACCCTACTAACTTTGCGCCGGCGATTGGGGG CAGAGAGAGTATTGTTGTATCCTAGCTATATACAAGTTAATTTAAACTGTAAACGGCT CAAATATATTTTCTT GTGGCCTGAGATTCGTTGTGCCTGATTTTTAAATTCGCCTTCTGAATTTCCT TTAaaaa ] [+] EMBL AU172344 [ cnATATGAAGAAATGTGGAGCTCCA AGGCCA AG CCCTGGATNTAATGCTACCCCA TGTCGCAAAGNCA AGGACGCTCCGGAAGGGAGCTGGACCTGCCCGGAGT GCAACAACCTGAANTACCCT TT CCGCCCGGCGTGCAATCGGAAAGGCTGC GGAAGCAGCAGGCCGGCATCGGCCA CGGCGAACTAGGACCCTACTAACTTTGCGCCGGCGATTGGGGG CANAGAGAGTATTGTTGTATCCTAGCTATATACAAGTTAATTTAAACTGTNATCGGCT CAAATATATTTTCTT GTGGCCTGAGATTCGTTGTGCCTGATTTTTAAATTCGCCTTNTGAATTTCCT TTAaaaaaa ] [-] EMBL BU673410 [ A AG CCCTGGATCTAATGCTACCCCA TCTCGCAAAGACA AGGACGCTCCGGAAGGGAGCTGGACCTGCCCGGAGT GCAACAACCTGAACTACCCT TT CCGCACGGCGTGCAATCGGAAAGGCTGC GGAAGCAGCAGGCCGGCAGCGGCCA CGGCGAACTAGGACCCTACTAACTTTGCGCCGGCGATTGGGGG CAGAGAGAGTATTGTTGTATCCTAGCTATATACAAGTTAATTTAAACTGTAAACGGCT CAAATATATTTTCTT GTGGCCTGAGATTCGTTGTGC ] [+] EMBL BI807330 [ ACGCTCCGGAAGGGAGCTGGACCTGCCCGGAGTGGCAACAACCTGAACTACCCTNTT CCGCACGGCGTGCAATCGGAAAGGCTGCNGGAAGCAGCAGGCCGGCAGCGGCCA CGGCGAACTAGGACCCTACTAACTTTGCGCCGGCGNTTGGGGG CAGAGAGAGTATTGTTGTATCCTAGCTATANACAAGTTAATTT AACTGT ACGGCT CAAATATATTTTCTT GTGGCCTGAGATTCGTTGTGCCT ] [+] EMBL CB635628 [ CCCT TT CCTCACGGCGTGCAATCGGAAAGGCTGC GGAAGCAGCAGGCCGGCAGCGGCCA CGGCGAACTAGGACCCTACTAACTTTGCGCCGGCGATTGGGGG CAGAGAGAGTATTGTTGTATCCTAGCTATATACAAGTTAATTTAAACTGTAAACGGCT CAAATATATTTTCTT GTGGCCTGAGATTCGTTGTGCCTGATTTTTAAATTCGCCTTCTGAATTTCCT TTACGATTTATAGAGCTTTTATATACATTGGAT ] consensusID : consensus_15933#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 506 fasta sequence [TTTCTAGCCCATGGTCTGGTGGAGCATTAGTGGAAAATAATGACAGCTCTGCTTCACGCAAGCGTCGTGGAGGCCCAGATGGAATGGCTGAGAATGACTGGATCTGCCCAAAGTGTGAGAATGTCAACTTTTCCTTCAGAAACAGTTGCAATATGAAGAAATGTGGAGCTCCAAGGCCAAGCCCTGGATCTAATGCTACCCCATGTCGCAAAGACAAGGACGCTCCGGAAGGGAGCTGGACCTGCCCGGAGTGCAACAACCTGAACTACCCTTTCCGCACGGCGTGCAATCGGAAAGGCTGCGGAAGCAGCAGGCCGGCAGCGGCCACGGCGAACTAGGACCCTACTAACTTTGCGCCGGCGATTGGGGGCAGAGAGAGTATTGTTGTATCCTAGCTATATACAAGTTAATTTNNNCTGTAAACGGCTCAAATATATTTTCTTGTGGCCTGNNNTTCGTTGTGCCTGANNNNNANNNNNNCNTCTNNNNNNCCTTTAAAAANNNNN] [+] EMBL CF195905 [TTTCTAGCCCATGGTCTGGTGGAGCATTAGTGGAAAATAATGACAGCTCTGCTTCACGCAAGCGTCGTGGAGGCCCAGATGGAATGGCTGAGAATGACTGGATCTGCCCAAAGTGTGAGAATGTCAACTTTTCCTTCAGAAACAGTTGCAATATGAAGAAATGTGGAGCTCCAAGGCCAAGCCCTGGATCTAATGCTACCCCATGTCGCAAAGACAAGGACGCTCCGGAAGGGAGCTGGACCTGCCCGGAGTGCAACAACCTGAACTACCCTTTCCGCACGGCGTGCAATCGGAAAGGCTGCGGAAGCAGCAGGCCGGCAGCGGCCACGGCGAACTAGGACCCTACTAACTTTGCGCCGGCGATTGGGGGCAGAGAGAGTATTGTTGTATCCTAGCTATATACAAGTTAATTTNNNCTGTAAACGGCTCAAATATATTTTCTTGTGGCCTGNNNTTCGTTGTGCCTGANNNNNANNNNNNCNTCTNNNNNNCCTTTAAAAANNNNN] consensusID : consensus_15933#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 457 fasta sequence [TCACAGCAAGCGTCGTGGAGCCCCCGATTGGAATGCTGAGATATGACGTGGATCTGGCCCCAAGTGTGAGAATGCTCAACTTTTCCTTCAGAAACAGTGGCAAATATGAAGAAATGTGGAGCTCCAAGGCACAAGCCCTGGATCTAATGCTACACACCATGTCGCAAAGACAAGGACGCTCCGGAAGGGAGCTGGACACTGCCCGGAGTGCAACAACCTGAACTACCCTTTCCGCACGGCGTGCACATCGGAAAGGCTGCGGAAGCAGCAGGCCAGGCAGCGGCACACGGCGAACTAGGACCCTACTAACTTTGCGCCGGCAGATTGGGGGCAGAGAGAGTATTGTTGTATCCTAGCTATATACCAGTTAATTTAAACTGTAAACAGGCTCAAATATATTTTCTTGTGGCCTGAGATTCGTTGTGCCTGATTTTTAAATTCGCCCTTAAAAAAAAAA] [+] EMBL BI807921 [TCACAGCAAGCGTCGTGGAGCCCCCGATTGGAATGCTGAGATATGACGTGGATCTGGCCCCAAGTGTGAGAATGCTCAACTTTTCCTTCAGAAACAGTGGCAAATATGAAGAAATGTGGAGCTCCAAGGCACAAGCCCTGGATCTAATGCTACACACCATGTCGCAAAGACAAGGACGCTCCGGAAGGGAGCTGGACACTGCCCGGAGTGCAACAACCTGAACTACCCTTTCCGCACGGCGTGCACATCGGAAAGGCTGCGGAAGCAGCAGGCCAGGCAGCGGCACACGGCGAACTAGGACCCTACTAACTTTGCGCCGGCAGATTGGGGGCAGAGAGAGTATTGTTGTATCCTAGCTATATACCAGTTAATTTAAACTGTAAACAGGCTCAAATATATTTTCTTGTGGCCTGAGATTCGTTGTGCCTGATTTTTAAATTCGCCCTTAAAAAAAAAA] consensusID : consensus_15933#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 421 fasta sequence [CCAGAAACCGTTNCCCATATGGAAGAAATGTGGAGCTCCCAGGCCCAGCCCCTGGATCTAATGCTACCCCCTGTCGCCNAAGTACCAGGACGCTCCGGAAGGGAGCTGGACCTGCCCGGAGTGGCAACCACCTGAACTACCCNTTCCAGCACCGGCGTCCATCGGAAAGGCTGCGGAAGCCCACGGCCGGCAACGGCCCCGGCGAACTAGGACCCTACTAACTTTGCGNCCGGCGATTGGGGCCCGAGAGATTATTGTTGTATCCTAGCTATATACCAGTTAATCTTATAACCNTGTACGGCTCCAATATATTTTCTTTGGCCCTGAGATTCCTTGTGCCTGATTTTTAAATTCCCTTCTGAATTCCNTTACGATTTATAGACTTTTATATACCTTGGATTAATCCCCTCTTGTTCCCTGG] [+] EMBL BM421519 [CCAGAAACCGTTNCCCATATGGAAGAAATGTGGAGCTCCCAGGCCCAGCCCCTGGATCTAATGCTACCCCCTGTCGCCNAAGTACCAGGACGCTCCGGAAGGGAGCTGGACCTGCCCGGAGTGGCAACCACCTGAACTACCCNTTCCAGCACCGGCGTCCATCGGAAAGGCTGCGGAAGCCCACGGCCGGCAACGGCCCCGGCGAACTAGGACCCTACTAACTTTGCGNCCGGCGATTGGGGCCCGAGAGATTATTGTTGTATCCTAGCTATATACCAGTTAATCTTATAACCNTGTACGGCTCCAATATATTTTCTTTGGCCCTGAGATTCCTTGTGCCTGATTTTTAAATTCCCTTCTGAATTCCNTTACGATTTATAGACTTTTATATACCTTGGATTAATCCCCTCTTGTTCCCTGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15933#1 ------------------------------------------------------------ consensus_15933#2 ------------------------------------------------------------ consensus_15933#0 TCGCCCACCTCTCTCTCTCTCTCTCCCCTGGTCTCTCGCTCTCTTCGCTCGCGGCGGCTT 60 consensus_15933#3 ------------------------------------------------------------ consensus_15933#1 ------------------------------------------------------------ consensus_15933#2 ------------------------------------------------------------ consensus_15933#0 CTCCGCCTCCGCCTCCGCCGCCCTCTCCTCCTCTCGCCTCGCCGCCGGCGCCGCCAGCCA 120 consensus_15933#3 ------------------------------------------------------------ consensus_15933#1 ------------------------------------------------------------ consensus_15933#2 ------------------------------------------------------------ consensus_15933#0 CCGCGCGGGTCGGGCGGGCCGTATCTTCCTTTCTGTTCCGATGGCTTCCGCGAAGGTGGA 180 consensus_15933#3 ------------------------------------------------------------ consensus_15933#1 ------------------------------------------------------------ consensus_15933#2 ------------------------------------------------------------ consensus_15933#0 GAACCGCGGCGGCGGTGGGTTCGGTTCGAAGAGGTCACGCAACGACGTGTCTGTAAGGGA 240 consensus_15933#3 ------------------------------------------------------------ consensus_15933#1 ------------------------------------------------------------ consensus_15933#2 ------------------------------------------------------------ consensus_15933#0 GGGGGACTGGACTTGTCCTCAGTGTGGTAATGTCAACTTCAGTTTTAGAAATGTTTGCAA 300 consensus_15933#3 ------------------------------------------------------------ consensus_15933#1 ------------------------------------------------------------ consensus_15933#2 ------------------------------------------------------------ consensus_15933#0 CCGCGGAGCCTGTGGTGCACCCCGTCCATCACCGAGTCTAAGCCCAAGAGTGCCACCTCC 360 consensus_15933#3 ------------------------------------------------------------ consensus_15933#1 ------------------------------------------------------------ consensus_15933#2 ------------------------------------------------------------ consensus_15933#0 TCCTGCTGCTGGATATGATCGGCCACATCTTGGATATGATCGGCCACATCTGTTTTATGG 420 consensus_15933#3 ------------------------------------------------------------ consensus_15933#1 ------------------------------------------------------------ consensus_15933#2 ------------------------------------------------------------ consensus_15933#0 TAGTGCTGGCACCCCACCTCCTATTCCTCTTGGATCTGGTAGCTATGGTGCCCCCTATCC 480 consensus_15933#3 ------------------------------------------------------------ consensus_15933#1 ------------------------------------------------------------ consensus_15933#2 ------------------------------------------------------------ consensus_15933#0 ACATCTTGGCTTGCGGTATGGATATGGTCCACCAGTAGGACCTCCTGCTTCATATGGCCT 540 consensus_15933#3 ------------------------------------------------------------ consensus_15933#1 ------------------------------------------------------------ consensus_15933#2 ------------------------------------------------------------ consensus_15933#0 TTTTTCTTCTTATGGTCAACCTGGACCAATGGGCAGTCCGATGGGAGGCATGGGCTATGG 600 consensus_15933#3 ------------------------------------------------------------ consensus_15933#1 --------------------------------------------------------TTTC 4 consensus_15933#2 ------------------------------------------------------------ consensus_15933#0 CCCTGGACCTGAGCTAGGCCGATATGGTTATGGTTTTAGAGGATCTCCAATGCCGGTTTC 660 consensus_15933#3 ------------------------------------------------------------ consensus_15933#1 TAGCCCATGGTCTGGTGGAGCATTAGTGGAAAATAATGACAGCTCTGCTTCAC-GCAAGC 63 consensus_15933#2 -------------------------------------------------TCACAGCAAGC 11 consensus_15933#0 TAGCCCATGGTCTGGTGGAGCATTAGTGGAAAATAATGACAGCTCTGCTTCAC-GCAAGC 719 consensus_15933#3 ------------------------------------------------------------ consensus_15933#1 GTCGTGGAGGCCCAGATGGAATGGCTGAGA-ATGAC-TGGATCTG-CCCAAAGTGTGAGA 120 consensus_15933#2 GTCGTGGAGCCCCCGATTGGAATGCTGAGATATGACGTGGATCTGGCCCCAAGTGTGAGA 71 consensus_15933#0 GTCGTGGAGGCCCAGATGGAATGGCTGAGA-ATGAC-TGGATCTG-CCCAAAGTGTGAGA 776 consensus_15933#3 ------------------------------------------------------------ consensus_15933#1 ATG-TCAACTTTTCCTTCAGAAACAGTTGCAA-TATG-AAGAAATGTGGAGCTCCAAGGC 177 consensus_15933#2 ATGCTCAACTTTTCCTTCAGAAACAGTGGCAAATATG-AAGAAATGTGGAGCTCCAAGGC 130 consensus_15933#0 ATG-TCAACTTTTCCTTCAGAAACAGTTGCAA-TATG-AAGAAATGTGGAGCTCCAAGGC 833 consensus_15933#3 ----------------CCAGAAACCGTTNCCCATATGGAAGAAATGTGGAGCTCCCAGGC 44 ******* ** * **** ***************** **** consensus_15933#1 -CAAGCCCTGGATCTAATGCTACCC--CATGTCGCAAAGACAAGGACGCTCCGGAAGGGA 234 consensus_15933#2 ACAAGCCCTGGATCTAATGCTACACACCATGTCGCAAAGACAAGGACGCTCCGGAAGGGA 190 consensus_15933#0 -CAAGCCCTGGATCTAATGCTACCC--CATGTCGCAAAGACAAGGACGCTCCGGAAGGGA 890 consensus_15933#3 CCAGCCCCTGGATCTAATGCTACCCCCTGTCGCCNAAGTACCAGGACGCTCCGGAAGGGA 104 ** ****************** * * * ** ** ****************** consensus_15933#1 GCTGGAC-CTGCCCGGAGTG-CAACAACCTGAACTACCCTTTCC-GCAC-GGCGTGCA-A 289 consensus_15933#2 GCTGGACACTGCCCGGAGTG-CAACAACCTGAACTACCCTTTCC-GCAC-GGCGTGCACA 247 consensus_15933#0 GCTGGAC-CTGCCCGGAGTG-CAACAACCTGAACTACCCTTTCC-GCAC-GGCGTGCA-A 945 consensus_15933#3 GCTGGAC-CTGCCCGGAGTGGCAACCACCTGAACTACCCNTTCCAGCACCGGCGTCCA-- 161 ******* ************ **** ************* **** **** ***** ** consensus_15933#1 TCGGAAAGGCTGCGGAAGCAGCAGGCC-GGCAGCGGC-CACGGCGAACTAGGACCCTACT 347 consensus_15933#2 TCGGAAAGGCTGCGGAAGCAGCAGGCCAGGCAGCGGCACACGGCGAACTAGGACCCTACT 307 consensus_15933#0 TCGGAAAGGCTGCGGAAGCAGCAGGCC-GGCAGCGGC-CACGGCGAACTAGGACCCTACT 1003 consensus_15933#3 TCGGAAAGGCTGCGGAAGCCCACGGCC-GGCAACGGC-CCCGGCGAACTAGGACCCTACT 219 ******************* **** **** **** * ******************** consensus_15933#1 AACTTTGCGCCGGC-GATTGGGGGCAGAGAGAGTATTGTTGTATCCTAGCTATATACAAG 406 consensus_15933#2 AACTTTGCGCCGGCAGATTGGGGGCAGAGAGAGTATTGTTGTATCCTAGCTATATACCAG 367 consensus_15933#0 AACTTTGCGCCGGC-GATTGGGGGCAGAGAGAGTATTGTTGTATCCTAGCTATATACAAG 1062 consensus_15933#3 AACTTTGCGNCCGGCGATTGGGGCCCGAGAGATTATTGTTGTATCCTAGCTATATACCAG 279 ********* * * ******** * ****** ************************ ** consensus_15933#1 TTAATTTNN--NCTGTAAAC-GGCTCAAATATATTTTCTTGTGGCCTGNNNTTCGTTGTG 463 consensus_15933#2 TTAATTTAA--ACTGTAAACAGGCTCAAATATATTTTCTTGTGGCCTGAGATTCGTTGTG 425 consensus_15933#0 TTAATTTAA--ACTGTAAAC-GGCTCAAATATATTTTCTTGTGGCCTGAGATTCGTTGTG 1119 consensus_15933#3 TTAATCTTATAACCNTGTAC-GGCTCCAATATATTTTCTTTGGCCCTGAGATTCCTTGTG 338 ***** * * * ** ***** ************* * **** *** ***** consensus_15933#1 CCTGANNNNNANNNNNNCNTCTNNNNNNCCTTTAAAAANNNNN----------------- 506 consensus_15933#2 CCTGATTTTTAAATTCGCCCTTAAAAAA-----AAAA----------------------- 457 consensus_15933#0 CCTGATTTTTAAATTCGCCTTCTGAATTTCCTTTACGATTTATAGAGCTTTTATATACAT 1179 consensus_15933#3 CCTGATTTTTAAATTCCCTTCTGAATTCCNTTACGATTTATAGACTTTTATATACCTTGG 398 ***** * * consensus_15933#1 ----------------------- consensus_15933#2 ----------------------- consensus_15933#0 TGGATTAAAAAAA---------- 1192 consensus_15933#3 ATTAATCCCCTCTTGTTCCCTGG 421 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||