These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15974#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 19 consensus length = 915 fasta sequence [AAGGGGGGGTGAAAGGAATAAACAAAAGCNGCACGCAAACCTGTGGTAGCAAGTGGGGGGAGTTCTTTGACATATATACCCCTCCTTCCTCTTGGTTCCTTTCCCCCAACTCCATTATTGATTCTTGCAAGGAGGAAGAGCAGCTAGAGGCGAGGCAAGAAAAGAAGTGAAATCTCTCCGTTAGACAGGAAGAGGAAAAGCAAGGGGGAATTGGGGATGGCGTCAAAGAGGATACAGAAGGAGCTCAAGGATCTGCAGAAGGATCCCCCTACATCATGCAGTGCAGGTCCTGTTGGTGAAGACATGTTCCACTGGCAGGCAACGATAATGGGTCCATCTGATAGCCCATATGCTG-GTGGAGTTTTCCTAGTTACCATCCAC-TTCCCTCCTGATTATCCCTTCAAACCACCCAAGGTGGCG-TTTCGCACCAAGGTTTTCCATCCAAACATCAACAGC-AACGGGAGCATTT-GCC--TTGAC-AT-CCTTAA--GG-ACC--AATGGA-G--CCCA-GC-AC-TAA-CCA-TTTCCAAGGTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCTC-TGGTCCCTGAGATCGCCCACATGTACAAGACAGATAGGCA-CAAGTACGAGAACACAGCAAGGACCTGGACTCAGA-GGTACGCCATGTAGCA-CCTCAGATA-TCGATGGACATG-T-CGATGTTGTAACAACATTATCAACGGGTGTGTCTCCCTCTCGCCTTGTGTGGTGTAAGGATCAAAACCGGCTTTGCAGTGCACTCTTGGTGTTGCTCCATTGTGTCACTCACTCATTGCAGTGATTTCGAATAGTATCAAACTGGTGGTTTTTTTCGGTCAGATAATGTTTGCAACTTGCCAACAAAAAAAAAAAAAAAAAAAAAAAATGCATGCCGTTACGTAGCGTATC] [+] EMBL CB097211 [AAGGGGGGGTGAAAGGAATAAACAAAAGCNGCACGCAAACCTGTGGTAGCAAGTGGGGGGAGTTCTTTGACATATATACCCCTCCTTCCTCTTGGTTCCTTTCCCCCAACTCCATTATTGATTCTTGCAAGGAGGAAGAGCAGCTAGAGGCGAGGCAAGAAAAGAAGTGAAATCTCTCCGNNAGACAGGAAGAGGAAAAGCAAGGGGGAATTGGGGATGGCGTCAAAGAGGATACAGAAGGAGCTCAAGGATCTGCAAAAGGATCCCCCTACATCATGCAGTGCAGGTCCTGTTGGTGAAGACATGTTCCACTGGCAGGCAACGATAATGGGTCCATCTGATAGCCCATATGCTG GTGGAGTTTTCCTAGNTACCATCCAC TTCCCTCCTGATTATCCCTTCAAACCACCCAAGGTGGCG TTTCGCACCAAGGTTTTCCATCCAAACAACAACAGC AACGGGAGCATTT GCC TTGAC AT CCTTAA GG ACC AATGGA G CCCA GC AC TAA CCA TTTCCAAGGGGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCTTGATGATCCTCTTGGTCCCTGAGATCNCCCACATGTACAAGACAGATAGGCACCAAGTACGAGAACACAGCAAGGACCTGGACTCAAAGGGTACNCCATGTAGCACCCTCAAATATTCGATGGGCATG TCCGATGNTGTna ] [+] EMBL CF299363 [ gagtagaaaAACTCC TTATTGATTCTTGCAAGGAGGAAGAGCAGCTAGAGGCGAGGCAAGAAAAGAAGTGAAATCTCTCCGTTAGACAGGAAGAGGAAAAGCAAGGGGGAATTGGGGATGGCGTCAAAGAGGATACAGAAGGAGCTCAAGGATCTGCAGAAGGATCCCCCTACATCATGCAGTGCAGGTCCTGTTGGTGAAGACATGTTCCACTGGCAGGCAACGATAATGGGTCCATCTGATAGCCCATATGCTGNGTGGAGTTTTCCTAGTTACCATCCAC TTCCCTCCTGATTATCCCTTCAAACCACCCAAGGTGGCG TTTCGCACCAAGGTTTTCCATCCAAACATCAACAGC AACGGGAGCATTT GCC TTGAC AT CCTTAA GG ACC AATGGA G CCCA GC AC TAA CCA TTTCCAAGGTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCTC TGGTCCCTGAGATCGCCCACATGTACAAGACAGATAGGCA CAAGTACGAGAACACAGCAAGGACCTGGACTCAGA GGTACGCCATGTAGCA CCTCAGATA TCGATGGACATG T CGATGTTGTAACAACATTATCAACGGGTGT ] [+] EMBL AK063826 [ TCCATTATTGATTCTTGCAAGGAGGAAGAGCAGCTAGAGGCGAGGCAAGAAAAGAAGTGAAATCTCTCCGTTAGACAGGAAGAGGAAAAGCAAGGGGGAATTGGGGATGGCGTCAAAGAGGATACAGAAGGAGCTCAAGGATCTGCAGAAGGATCCCCCTACATCATGCAGTGCAGGTCCTGTTGGTGAAGACATGTTCCACTGGCAGGCAACGATAATGGGTCCATCTGATAGCCCATATGCTG GTGGAGTTTTCCTAGTTACCATCCAC TTCCCTCCTGATTATCCCTTCAAACCACCCAAGGTGGCG TTTCGCACCAAGGTTTTCCATCCAAACATCAACAGC AACGGGAGCATTT GCC TTGAC AT CCTTAA GG ACC AATGGA G CCCA GC AC TAA CCA TTTCCAAGGTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCTC TGGTCCCTGAGATCGCCCACATGTACAAGACAGATAGGCA CAAGTACGAGAACACAGCAAGGACCTGGACTCAGA GGTACGCCATGTAGCA CCTCAGATA TCGATGGACATG T CGATGTTGTAACAACATTATCAACGGGTGTGTCTCCCTCTCGCCTTGTGTGGTGTAAGGATCAAAACCGGCTTTGCAGTGCACTCTTGGTGTTGCTCCATTGTGTCACTCACTCATTGCAGTGATTTCGAATAGTATCAAACTGGTGGTTTTTTTCGGTCAGATAATGTTTGCA ] [+] EMBL AK099284 [ ATTCTTGCAAGGAGGAAGAGCAGCTAGAGGCGAGGCAAGAAAAGAAGTGAAATCTCTCCGTTAGACAGGAAGAGGAAAAGCAAGGGGGAATTGGGGATGGCGTCAAAGAGGATACAGAAGGAGCTCAAGGATCTGCAGAAGGATCCCCCTACATCATGCAGTGCAGGTCCTGTTGGTGAAGACATGTTCCACTGGCAGGCAACGATAATGGGTCCATCTGATAGCCCATATGCTG GTGGAGTTTTCCTAGTTACCATCCAC TTCCCTCCTGATTATCCCTTCAAACCACCCAAGGTGGCG TTTCGCACCAAGGTTTTCCATCCAAACATCAACAGC AACGGGAGCATTT GCC TTGAC AT CCTTAA GG ACC AATGGA G CCCA GC AC TAA CCA TTTCCAAGGTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCTC TGGTCCCTGAGATCGCCCACATGTACAAGACAGATAGGCA CAAGTACGAGAACACAGCAAGGACCTGGACTCAGA GGTACGCCATGTAGCA CCTCAGATA TCGATGGACATG T CGATGTTGTAACAACATTATCAACGGGTGTGTCTCCCTCTCGCCTTGTGTGGTGTAAGGATCAAAACCGGCTTTGCAGTGCACTCTTGGTGTTGCTCCATTGTGTCACTCACTCATTGCAGTGATTTCGAATAGTATCAAACTGGTGGTTTTTTTCGGTCAGATAATGTTT ] [+] EMBL C97278 [ ATTCTTGCAAGGAGGAAGAGCAGCTAGAGGCGAGGCAAGAAAAGAAGTGAAATCTCTCCGTTAGACAGGAAGAGGAAAAGCAAGGGGGAATTGGGGATGGCGTCAAAGAGGATACAGAAGGAGCTCAAGGNTCTGCAGAAGGNTCCCCCTACATCATGCAGTGCAGGTCCTGTTGGTGAAGACATGTTCCACTGGCAGGCAACGATAATGGGTCCATCTGATAGCCCATATGCTG GTGGAGTTTTCCTAGTTACCATCCAC TTCCCTCCTGATTATCCCTTCAANCCACCCAAGGTGGCG TTTCGNACCAAGGTTTTCCATCCAANCATCANCAGCAAACGGGAGCATTT GCCCTTTGACAAT CCTTAAAGGG ACCCAAATGGAGG CCCAGGCAAC TAACCCATTTTCCAAGGgtntttg ] [+] EMBL AB074411 [ ccgTGCAAGGAGGAAGAGCAGCTAGAGGCGAGGCAAGAAAAGAAGTGAAATCTCTCCGTTAGACAGGAAGAGGAAAAGCAAGGGGGAATTGGGGATGGCGTCAAAGAGGATACAGAAGGAGCTCAAGGATCTGCAGAAGGATCCCCCTACATCATGCAGTGCAGGTCCTGTTGGTGAAGACATGTTCCACTGGCAGGCAACGATAATGGGTCCATCTGATAGCCCATATGCTG GTGGAGTTTTCCTAGTTACCATCCAC TTCCCTCCTGATTATCCCTTCAAACCACCCAAGGTGGCG TTTCGCACCAAGGTTTTCCATCCAAACATCAACAGC AACGGGAGCATTT GCC TTGAC AT CCTTAA GG ACC AATGGA G CCCA GC AC TAA CCA TTTCCAAGGTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCTC TGGTCCCTGAGATCGCCCACATGTACAAGACAGATAGGCA CAAGTACGAGAACACAGCAAGGACCTGGACTCAGA GGTACGCCATGTAGCA CCTCAGATA TCGATGGACATG T CGATGTTGTAACAACATTATCAACGGGTGTGTCTCCCTCTCGCCTTGTGTGGTGTAAGGATCAAAACCGGCTTTGCAGTGCACTCTTGGTGTTGCTCCATTGTGTCACTCACTCATTGCAGTGATTTCGAATAGTATCAAACTGGTGGTT ] [+] EMBL C28078 [ AAGGAGGAAGAGCAGCTAGAGGCGAGGCAAGAAAAGAAGTGAAATCTCTCCGTTAGACAGGAAGAGGAAAAGCAAGGGGGAATTGGGGATGGCGTCAAAGAGGATACAGAAGGAGCTCAAGGATCTGCAGAAGGATCCCCCTACATCATGCAGTGCAGGTCCTGTTGGTGAAGACATGTTCCACTGGCAGGCAACGATAATGGGTCCATCTGATAGCCCATATGCTG GTGGAGTTTTCCTAGTTACCATCCACTTTCCCTCCTGATTATCCCTTCAAACCACCCAAGGTGGCGTTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGC AACGGGAGCATTT GCC TTGACAATCCCTTAAAGGGNCCC ATTGGN GGCCCCA GC ACTTAA CCA TT ] [+] EMBL CK085206 [ AGGAGGAAGAGCAGCTAGAGGCGAGGCAAGAAAAGAAGTGAAATCTCTCCGTTAGACAGGAAGAGGAAAAGCAAGGGGGAATTGGGGATGGCGTCAAAGAGGATACAGAAGGAGCTCAAGGATCTGCAGAAGGATCCCCCTACATCATGCAGTGCAGGTCCTGTTGGTGAAGACATGTTCCACTGGCAGGCAACGATAATGGGTCCATCTGATAGCCCATATGCTG GTGGAGTTTTCCTAGTTACCATCCAC TTCCCTCCTGATTATCCCTTCAAACCACCCAAGGTGGCG TTTCGCACCAAGGTTTTCCATCCAAACATCAACAGC AACGGGAGCATTT GCC TTGAC AT CCTTAA GG ACC AATGGA G CCCA GC AC TAA CCA TTTCCAAGGTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCTC TGGTCCCTGAGATCGCCCACATGTACAAGACAGATAGGCA CAAGTACGAGAACACAGCAAGGACCTGGACTCAGA GGTACGCCATGTAGCA CCTCAGATA TCGATGGACATG T CGATGTTGTAACAACATTATCAACGGGTGTGTCTCCCTCTCGCCTTGTGTGGTGTAAG ] [+] EMBL C26939 [ AAGAGCAGCTAGAGGCGAGGCAAGAAAAGAAGTGAAATCTCTCCGTTAGACAGGAAGAGGAAAAGCAAGGGGGAATTGGGGATGGCGTCAAAGAGGATACAGAAGGAGCTCAAGGNTCTGCAGAAGGNTCCCCCTACATCATGCAGTGCAGGTCCTGTTGGTGAAGACATGTTCCACTGGCAGGCAACGATAATGGGTCCATCTGATAGCCCATATGCTG GTGGAGTTTTCCTAGTTACCATCCAC TTCCCTCCTGATTATCCCTTCAAACCACCCAAGGTGGCG TTTCGCACCAAGGTTTTCCATCCAAACATCAACAGC AACGGGAGCATTT GCC TTGAC AT CCTTAAG GG ACC AATGGA G CCCA GA AC TAA CCA TTTCCAAGGTGTTGCTGTCAATCTG TCCCTGCTGACTGATCCGAA CCTGATGA ] [+] EMBL C97188 [ GAGCAGCTAGAGGCGAGGCAAGAAAAGAAGTGAAATCTCTCCGTTAGACAGGAAGAGGAAAAGCAAGGGGGAATTGGGGATGGCGTCAAAGAGGATACAGAAGGAGCTCAAGGATCTGCAGAAGGATCCCCCTACATCATGCAGTGCAGGTCCTGTTGGTGAAGACATGTTCCACTGGCAGGCAACGATAATGGGTCCATCTGATAGCCCATATGCTG GTGGAGTTTTCCTAGTTACCATCCAC TTCCCTNCTGATTATCCCTTCAAACCACCCAAGGTGCCG TTTCG ACCAAGGTTTTCCATCCAAACATCAACAGC AACGGGAGCATTTNCCC TTGAC AT CCTTAA GG ACC AATGGA G CCCA GN AC TAA CCA TTTCCAAGGTGTTGCTGTCAATCTGTT ] [+] EMBL C97006 [ AAATCTCTCCGTTAGACAGGAAGAGGAAAAGCAAGGGGGAATTGGGGATGGCGTCAAAGAGGATACAGAAGGAGCTCAAGGATCTGCAGAAGGATCCCCCTACATCATGCAGTGCAGGTCCTGTTGGTGAAGACATGTTCCACTGGCAGGCAACGATAATGGGTCCATCTGATAGCCCATATGCTG GTGGAGTTTTCCTAGTTACCATCCAC TTCCCTCCTGATTATCCCTTCAAACCACCCAAGGTGGCG TTTCGCACCAAGGTTTTCCATCCAAACATCAACAGC AACGGGAGCATTT GCC TTGAC AT CCTTAA GG ACC AATGGA G CCCA GC AC TAA CCA TTTCCAAGGTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCTC TGGTCCCTGAGATCGCCCACATGTACAAGAC ] [+] EMBL CA999967 [ AGTTACCATCCAC TTCCCTCCTGATTATCCCTTCCATCCACCCAAGGTGGCG TTTCGCACCAAGGTTTTCCATCCAAACATCAACAGC AACGGGAGCATTT GCC TTGAC AT CCTTAA GG ACC AATGGA G CCCA GC AC TAA CCA TTTCCAAGGTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCTC TGGTCCCTGAGATCGCCCACATGTACAAGACAGATAGGCA CAAGTACGAGAACACAGCAAGGACCTGGACTCAGA GGTACGCCATGTAGCA CCTCAGATA TCGATGGACATG T CGATGTTGTAACAACATTATCAACGGGTGTGTCTCCCTCTCGCCTTGTGTGGTGTAAGGATCAAAACCGGCTTTGCAGTGCACTCTTGGTGTTGCTCCATTGTGTCACTCACTCATTGCAGTGATTTCGAATAGTATCAAACTGGTGGTTTTTTTCGGTCAGATAATGTTTGCAACTTGCCAAAAAAAA ] [+] EMBL CA754667 [ AC TTCCCTCCTGATTATCCCTTCAAACCACCCAAGGTGGCG TTTCGCACCAAGGTTTTCCATCCAAACATCAACAGC AACGGGAGCATTT GCC TTGAC AT CCTTAA GG ACC AATGGA G CCCA GC AC TAA CCA TTTCCAAGGTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCTC TGGTCCCTGAGATCGCCCACATGTACAAGACAGATAGGCA CAAGTACGAGAACACAGCAAGGACCTGGACTCAGA GGTACGCCATGTAGCA CCTCAGATA TCGATGGACATG T CGATGTTGTAACAACATTATCAACGGGTGTGTCTCCCTCTCGCCTTGTGTGGTGTAAGGATCAAAACCGGCTTTGCAGTGCACTCTTGGTGTTGCTCCATTGTGTCACTCACTCATTGCAGTGATTTCGAATAGTATCAAACTGGTGGTTTTTTTCGGTCAAAAAAaaaa ] [-] EMBL CF299364 [ AAGGTGGCG TTTCGCACCAAGGTTTTCCATCCAAACATCAACAGC AACGGGAGCATTT GCC TTGAC AT CCTTAA GG ACC AATGGA G CCCA GC AC TAA CCA TTTCCAAGGTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCTC TGGTCCCTGAGATCGCCCACATGTACAAGACAGATAGGCA CAAGTACGAGAACACAGCAAGGACCTGGACTCAGA GGTACGCCATGTAGCA CCTCAGATA TCGATGGACATG T CGATGTTGTAACAACATTATCAACGGGTGTGTCTCCCTCTCGCCTTGTGTGGTGTAAGGATCAAAACCGGCTTTGCAGTGCACTCTTGGTGTTGCTCCATTGTGTCACTCACTCATTGCAGTGATTTCGAATAGTATCAAACTGGTGGTTTTTTTCGGTCAGATAATGTTTGCAACTTGCCAACAAAAAAAAAAAAAAAAAAAAAAAATGCATGCCGTTACGTAGCGTATC] [+] EMBL AU062974 [ C AC TAA CCA TTTCCAAGGTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCTC TGGTCCCTGAGATCGCCCACATGTACAAGACAGATAGGCA CAAGTACGAGAACACAGCAAGGACCTGGACTCAGA GGTACGCCATGTAGCA CCTCAGATA TCGATGGACATG T CGATGTTGTAACAACATTATCAACGGGTGTGTCTCCCTCTCGCCTTGTGTGGTGTAAGGATCAAAACCGGCTTTGCAGTGCACTCTTGGTGTTGCTCCATTGTGTCACTCACTCATTGCAGTGATTTCGAATAGTATCAAACTGGTGGTTTTTTTCGGTCAGATAATGTTTGCAACTTGCCAACAA ] [+] EMBL AU063027 [ C AC TAA CCA TTTCCAAGGTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCTC TGGTCCCTGAGATCGCCCACATGTACAAGACAGATAGGCA CAAGTACGAGAACACAGCAAGGACCTGGACTCAGA GGTACGCCATGTAGCA CCTCAGATA TCGATGGACATG T CGATGTTGTAACAACATTATCAACGGGTGTGTCTCCCTCTCGCCTTGTGTGGTGTAAGGATCAAAACCGGCTTTGCAGTGCACTCTTGGTGTTGCTCCATTGTGTCACTCACTCATTGCAGTGATTTCGAATAGTATCAAACTGGTGGTTTTTTTCGGTCAGATAATGTTTGCAACTTGCCAAC ] [+] EMBL BI798985 [ GAACCCTGATGATCCTC TGGTCCCTGAGATCGCCCACATGTACAAGACAGATAGGCA CAAGTACGAGAACACAGCAAGGACCTGGACTCAGA GGTACGCCATGTAGCA CCTCAGATA TCGATGGACATGCT CGATGTTGTAACAACATTATCAACGGGTGTGTCTCCCTCTCGCCTTGTGTGGTGTAAGGATCAAAACCGGCTTTGCAGTGCACTCTTGGTGTTGCTCCATTGTGTCACTCACTCATTCCAGTGATTTCGAATAGTATCAAACTGGTGGTTTTTTTCGGTCAAAAAAaaaa ] [+] EMBL CF337249 [ ATGATCCTC TGGTCCCTGAGATCGCCCACATGTACAAGACAGATAGGCA CAAGTACGAGAACACAGCAAGGACCTGGACTCAGA GGTACGCCATGTAGCA CCTCAGATA TCGATGGACATG T CGATGTTGTAACAACATTATCAACGGGTGTGTCTCCCTCTCGCCTTGTGTGGTGTAAGGATCAAAACCGGCTTTGCAGTGCACTCTTGGTGTTGCTCCATTGTGTCACTCACTCATTGCAGTGATTTCGAATAGTATCAAACTGGTGGTTTTTTTCGGTCAGATAATGTTTGC ] [+] EMBL AU092701 [ GGTCCCTGAGATCGCCCACATGTACAAGACAGATAGNCA CAAGTACGAGAACNCAGCAAGGNCCTGGACTCAGA GGTACGCCATGTAGCA CCTCAGATN TCGATGGNCATG T CGATGTTGTAACAACATTATCAACGGGTGTGTCTCCCTCTCGCCTTGTGTGGTGTAAGGATCAAAACCGGCTTTGCAGTGCACTCTTGGTGTTGCTCCATTGTGTCACTCACTCATTGCAGTGATTTCGAATAGTATCAAACTGGTGGTTTTTTTCGGTCAAAAAAa ] consensusID : consensus_15974#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 605 fasta sequence [CCCCTTANAATCATGCAGTGCAGGTCCTGTTGGTGAAGAATGTTCCACTGGCAGGCAACGATAATGGGTCCATCTGATAGCCCATATGCTGGTGGAGTTTTCCTAGTTACCATCCACTTCCTCCTNATTATCCCTTNAAACCACCCAAGGTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATNAACAGCAACGGGAGCATTTGCCTTGACATCCTTAAGGACCAATGGAGCCCAGCANTAACCATTTCCAAGGTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCTCTGGTCCCTGAGATCGCCCACATGTACAAGACAGATAGGCACAAGTACGAGAACACAGCAAGGACCTGGACTCAGAGGTACGCCATGTAGCACCTCAGATATCGATGGACATGTCGATGTTGTAACAACATTATCAACGGGTGTGTCTCCCTCTCGCCTTGTGTGGTGTAAGGATCAAAACCGGCTTTGCAGTGCACTCTTGGTGTTGCTCCATTGTGTCANTNACNNNNNNAAGTGATTTCGAATAGTATCAAACTGGTGGTTTTTTTCGGTCAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL C97020 [CCCCTTANAATCATGCAGTGCAGGTCCTGTTGGTGAAGAATGTTCCACTGGCAGGCAACGATAATGGGTCCATCTGATAGCCCATATGCTGGTGGAGTTTTCCTAGTTACCATCCACTTCCTCCTNATTATCCCTTNAAACCACCCAAGGTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATNAACAGCAACGGGAGCATTTGCCTTGACATCCTTAAGGACCAATGGAGCCCAGCANTAACCATTTCCAAGGTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCTCTGGTCCCTGAGATCGCCCACATGTACAAGACAGATAGGCACAAGTACGAGAACACAGCAAGGACCTGGACTCAGAGGTACGCCATGTAGCACCTCAGATATCGATGGACATGTCGATGTTGTAACAACATTATCAACGGGTGTGTCTCCCTCTCGCCTTGTGTGGTGTAAGGATCAAAACCGGCTTTGCAGTGCACTCTTGGTGTTGCTCCATTGTGTCANTNACNNNNNNAAGTGATTTCGAATAGTATCAAACTGGTGGTTTTTTTCGGTCAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_15974#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 552 fasta sequence [AATGGAGCCCAGCACTAACCATTTCCAAGGTNTTCCTTTCATCGCGTTAACGCTAGTTGTNTCCTTTTGCGAGGCGGTTGCTTGGTCTCTCGCAGTTGGGCTGACGAATCCCGCTTTACATGTGCTCTCTGCTTGCTTTCAGGTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCTCTGGTCCCTGAGATCGCCCACATGTATCANAGACAGATAGGCACAAGTACGAGAACACAGCAAGGACCTGGACTCAGAGGTACGCCATGTAGCACCTCAGATATCGATGGACATGTCGATGTTGTAACAACATTATCAACGGGTGTGTCTCCCTCTCGCCTTGTGTGGTGTAAGGATCAAAACCGGCTTTGCAGTGCACTCTTGGTGTTGCTCCATTGTGTCACTCACTCAGTTGCAGTGATTTCGAATAGTATCAAACTGGTGGTTTTTTTCGGTCAGATAATGTTTGCAACTTGCCACAAGTCAGTGCTTCCAATGCAGTGGTTCCTTGCAATCTTGGCCCTCCAAGATGCAAATAA] [+] EMBL BQ908007 [AATGGAGCCCAGCACTAACCATTTCCAAGGTNTTCCTTTCATCGCGTTAACGCTAGTTGTNTCCTTTTGCGAGGCGGTTGCTTGGTCTCTCGCAGTTGGGCTGACGAATCCCGCTTTACATGTGCTCTCTGCTTGCTTTCAGGTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCTCTGGTCCCTGAGATCGCCCACATGTATCANAGACAGATAGGCACAAGTACGAGAACACAGCAAGGACCTGGACTCAGAGGTACGCCATGTAGCACCTCAGATATCGATGGACATGTCGATGTTGTAACAACATTATCAACGGGTGTGTCTCCCTCTCGCCTTGTGTGGTGTAAGGATCAAAACCGGCTTTGCAGTGCACTCTTGGTGTTGCTCCATTGTGTCACTCACTCAGTTGCAGTGATTTCGAATAGTATCAAACTGGTGGTTTTTTTCGGTCAGATAATGTTTGCAACTTGCCACAAGTCAGTGCTTCCAATGCAGTGGTTCCTTGCAATCTTGGCCCTCCAAGATGCAAATAA] consensusID : consensus_15974#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 525 fasta sequence [ATGCAGTGCAGGTCCTGTTGGTGAAGACATGTCCTACTGGCAGGCAACGATAATGGGTCCATCTGATAGCCCATATGCTGGTGGAGTTTTCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAGGTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGCATTTGCCTTGACATCCTTAAGGACCAATGGAGCCCAGCACTAACCATTTCCAAGGTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCTCTGGTCCCTGAGATCGCCCACATGTACAAGACAGATAGGCACAAGTACGAGAACACAGCAAGGACCTGGACTCAGAGGTACGCCATGTAGCACCTCAGATATCGATGGACATGTCGATGTTGTAACAACATTATCAACGGGTGTGTCTCCCTCTCGCCTTGTGTGGTGTAAGGATCAAAACCGGCTTTGCAGTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CB000215 [ATGCAGTGCAGGTCCTGTTGGTGAAGACATGTCCTACTGGCAGGCAACGATAATGGGTCCATCTGATAGCCCATATGCTGGTGGAGTTTTCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAGGTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGCATTTGCCTTGACATCCTTAAGGACCAATGGAGCCCAGCACTAACCATTTCCAAGGTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCTCTGGTCCCTGAGATCGCCCACATGTACAAGACAGATAGGCACAAGTACGAGAACACAGCAAGGACCTGGACTCAGAGGTACGCCATGTAGCACCTCAGATATCGATGGACATGTCGATGTTGTAACAACATTATCAACGGGTGTGTCTCCCTCTCGCCTTGTGTGGTGTAAGGATCAAAACCGGCTTTGCAGTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_15974#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 482 fasta sequence [TTTCCATCCAAACATCAACAGCAACGGGAGCATTTGCCTTGACATCCTTAAGGACCAATGGAGCCCAGCACTAACCATTTCCAAGGTNTTGCTGTCAATCTGTTCCCTGCTGACTGAT-CCGAACCCTGATGATCCTCTGGTCCCTGAGATCGCCCACATGTACAAGACAGATAGGCACAAGTACGAGAACACAGCAAGGACCTGGACTCAGAGGTACNCCATGTAGCACCTCAGATATCGATGGACATGTCGATGTTGTAACAACATTATCAACGGGTGTGTCTCCCTCTCGCCTTGTGTGGTGTAAGGATCAAAACCGGCTTTGCAGTGCACTCTTGGTGTTGCTCCATTGTGTCACTCACTCATTGCAGTGATTTCGAATAGTATCAAACTGGTGGTTTTTTTCGGTCAGATAATGTTTGCAACTTGCCAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATCA] [+] EMBL C97007 [TTTCCATCCAAACATCAACAGCAACGGGAGCATTTGCCTTGACATCCTTAAGGACCAATGGAGCCCAGCACTAACCATTTCCAAGGTNTTGCTGTCAATCTGTTCCCTGCTGACTGAT CCGAACCCTGATGATCCTCTGGTCCCTGAGATCGCCCACATGTACAAGACAGATAGGCACAAGTACGAGAACACAGCAAGGACCTGGACTCAGAGGTACNCCATNTAGCACCTCAGATATCGATGGACATGTCGATGTTGTAACAACATTATCAACGGGTGTGTCTCCCTCTCGCCTTGTGTGGTGTAAGGATCAAAACCGGCTTTGCAGTGCACTCTTGGTGTTGCTCCATTGTGTCACTCACTCATTGCAGTGATTTCGAATAGTATCAAACTGGTGGTTTTTTTCGGTCAGATAATGTTTGCAACTTGCCAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA ] [+] EMBL C97279 [ GCTGANTGATCCCGAACCCTGATGACCCTCTGGTCCCTGAGATCGCCCACATGTACAAGACAGATAGGCACAAGTACGAGAACACAGCAAGGACCTGGACTCAGAGGTACGCCATGTAGCACCTCAGATATCGATGGACATGTCGATGTTGTAACAACATTATCAACGGGTGTGTCTCCCTCTCGCCTTGTGTGGTGTAAGGATCAAAACCGGCTTTGCAGTGCACTCTTGGTGTTGCTCCATTGTGTCACTCACTCATTGCAGTGATTTCGAATAGTATCAAACTGGTGGTTTTTTTCGGTCAGATAATGTTTGCAACTTGCCAACAAAAAAAAAAAAAAAAAAAAAAAAAAAA ] [-] EMBL CF317797 [ aGACCCCTGATGATCCTTTGGTCCCTGAGATCGCCCACATGTCCAAGACAGATAGGCCCAAGTACGAGAACCCAGCAAGGACCTGGATTCAAAGGTACCCCATGTAGCCCCTCAGATATCGATGGACATGTCGATGTTGTAACAACATTATCAACGGGTGTGTTTCCCTTTCCCCTTGTGTGGTGTAAGGATCAAAACCGGCTTTGCAGTGCACTTTTGGTGTTGCTCCATTGTGTCACTCACTCATTGCAGGGATTTCGAATAGTATCAAACTGGTGGTTTTTTTCGGTCAGATAATGTTTGCAACTTGCCACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAcactgtca] consensusID : consensus_15974#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 441 fasta sequence [TTAAGGACCAATGGAGCCCAGCACTAACCATTTCCAAGGTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCTCTGGTCCCTGAGATCGCCCACATGTACAAGACAGATAGGCACAAGTACGAGAACACAGCAAGGACCTGGACTCAGAGGTACGCCATGTAGCACCTCAGATATCGATGGACATGTCGATGTTGTAACAACATTATCAACGGGTGTGTCTCCCTCTCGCCTTGTGTGGTGTAAGGATCAAACCGGCTTTGCAGTGCACTCTTGGTGTTGCTCCATTGTGTCACTCACTCATTGCAGTGATTTCGAATAGTATCAACTGGTGGTTTTTTTCGGTCAGATAATGTTTCAACTTGCCACAAGTCAGTGCTTCCAATCCAGTGGTTCCTTGAATCTTGCCCTCCAGATGCAAAAAAAA] [+] EMBL BM037821 [TTAAGGACCAATGGAGCCCAGCACTAACCATTTCCAAGGTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCTCTGGTCCCTGAGATCGCCCACATGTACAAGACAGATAGGCACAAGTACGAGAACACAGCAAGGACCTGGACTCAGAGGTACGCCATGTAGCACCTCAGATATCGATGGACATGTCGATGTTGTAACAACATTATCAACGGGTGTGTCTCCCTCTCGCCTTGTGTGGTGTAAGGATCAAACCGGCTTTGCAGTGCACTCTTGGTGTTGCTCCATTGTGTCACTCACTCATTGCAGTGATTTCGAATAGTATCAACTGGTGGTTTTTTTCGGTCAGATAATGTTTCAACTTGCCACAAGTCAGTGCTTCCAATCCAGTGGTTCCTTGAATCTTGCCCTCCAGATGCAAAAAAAA] [+] EMBL BI799763 [ GAACCCTGATGATCCTCTGGTCCCTGAGATCGCCCACATGTACAAGACAGATAGGCACAAGTACGAGAACACAGCAAGGACCTGGACTCAGAGGTACGCCATGTAGCACCTCAGATATCGATGGACATGTCGATGTTGTAACAACATTATCAACGGGTGTGTCTCCCTCTCGCCTTGTGTGGTGTAAGGATCAAACCGGCTTTGCAGTGCACTCTTGGTGTTGCTCCCTTGTGTCACTCACTCATTGCAGTGATTTCGAATAGTATCAACTGGTGGTTTTTTTCGGTCAAAAAAaaaa ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15974#1 ------------------------------------------------------------ consensus_15974#3 ------------------------------------------------------------ consensus_15974#0 AAGGGGGGGTGAAAGGAATAAACAAAAGCNGCACGCAAACCTGTGGTAGCAAGTGGGGGG 60 consensus_15974#4 ------------------------------------------------------------ consensus_15974#2 ------------------------------------------------------------ consensus_15974#5 ------------------------------------------------------------ consensus_15974#1 ------------------------------------------------------------ consensus_15974#3 ------------------------------------------------------------ consensus_15974#0 AGTTCTTTGACATATATACCCCTCCTTCCTCTTGGTTCCTTTCCCCCAACTCCATTATTG 120 consensus_15974#4 ------------------------------------------------------------ consensus_15974#2 ------------------------------------------------------------ consensus_15974#5 ------------------------------------------------------------ consensus_15974#1 ------------------------------------------------------------ consensus_15974#3 ------------------------------------------------------------ consensus_15974#0 ATTCTTGCAAGGAGGAAGAGCAGCTAGAGGCGAGGCAAGAAAAGAAGTGAAATCTCTCCG 180 consensus_15974#4 ------------------------------------------------------------ consensus_15974#2 ------------------------------------------------------------ consensus_15974#5 ------------------------------------------------------------ consensus_15974#1 ------------------------------------------------------------ consensus_15974#3 ------------------------------------------------------------ consensus_15974#0 TTAGACAGGAAGAGGAAAAGCAAGGGGGAATTGGGGATGGCGTCAAAGAGGATACAGAAG 240 consensus_15974#4 ------------------------------------------------------------ consensus_15974#2 ------------------------------------------------------------ consensus_15974#5 ------------------------------------------------------------ consensus_15974#1 -----------------------CCCCTTANAATCATGCAGTGCAGGTCCTGTTGGTGAA 37 consensus_15974#3 -----------------------------------ATGCAGTGCAGGTCCTGTTGGTGAA 25 consensus_15974#0 GAGCTCAAGGATCTGCAGAAGGATCCCCCTACATCATGCAGTGCAGGTCCTGTTGGTGAA 300 consensus_15974#4 ------------------------------------------------------------ consensus_15974#2 ------------------------------------------------------------ consensus_15974#5 ------------------------------------------------------------ consensus_15974#1 GA-ATGTTCCACTGGCAGGCAACGATAATGGGTCCATCTGATAGCCCATATGCTGGTGGA 96 consensus_15974#3 GACATGTCCTACTGGCAGGCAACGATAATGGGTCCATCTGATAGCCCATATGCTGGTGGA 85 consensus_15974#0 GACATGTTCCACTGGCAGGCAACGATAATGGGTCCATCTGATAGCCCATATGCTGGTGGA 360 consensus_15974#4 ------------------------------------------------------------ consensus_15974#2 ------------------------------------------------------------ consensus_15974#5 ------------------------------------------------------------ consensus_15974#1 GTTTTCCTAGTTACCATCCACTTCC-TCCTNATTATCCCTTNAAACCACCCAAGGTGGCG 155 consensus_15974#3 GTTTTCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAGGTGGCG 145 consensus_15974#0 GTTTTCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAGGTGGCG 420 consensus_15974#4 ------------------------------------------------------------ consensus_15974#2 --------------AATGGAGCCCAGCACTAACCATTTCCAAGGTNTTCCTTTCATCGCG 46 consensus_15974#5 ------------------------------------------------------------ consensus_15974#1 TTTCGCACCAAGGTTTTCCATCCAAACATNAACAGCAACGGGAGCATTTGCCTTGACATC 215 consensus_15974#3 TTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGCATTTGCCTTGACATC 205 consensus_15974#0 TTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGCATTTGCCTTGACATC 480 consensus_15974#4 --------------TTTCCATCCAAACATCAACAGCAACGGGAGCATTTGCCTTGACATC 46 consensus_15974#2 TTA-ACGCTAGTTGTNTCCTTTTGCG---AGGCGGTTGCTTGGTCTCTCGCAGTTGGGCT 102 consensus_15974#5 -----------------------------------------------------TTAAG-- 5 * consensus_15974#1 CTTAAGGACCAATGGAGCCCAGCANTAACCAT-TTCCAAGGTGTTGCTGTCAATCTGTTC 274 consensus_15974#3 CTTAAGGACCAATGGAGCCCAGCACTAACCAT-TTCCAAGGTGTTGCTGTCAATCTGTTC 264 consensus_15974#0 CTTAAGGACCAATGGAGCCCAGCACTAACCAT-TTCCAAGGTGTTGCTGTCAATCTGTTC 539 consensus_15974#4 CTTAAGGACCAATGGAGCCCAGCACTAACCAT-TTCCAAGGTNTTGCTGTCAATCTGTTC 105 consensus_15974#2 GACGAATCCCGCTTTACATGTGCTCTCTGCTTGCTTTCAGGTGTTGCTGTCAATCTGTTC 162 consensus_15974#5 GACCAATGGAGCCCAGCACTAACCATTT-------CCAAGGTGTTGCTGTCAATCTGTTC 58 * * * **** ***************** consensus_15974#1 CCTGCTGACTGATCCGAACCCTGATGATCCTCTGGTCCCTGAGATCGCCCACATGTAC-- 332 consensus_15974#3 CCTGCTGACTGATCCGAACCCTGATGATCCTCTGGTCCCTGAGATCGCCCACATGTAC-- 322 consensus_15974#0 CCTGCTGACTGATCCGAACCCTGATGATCCTCTGGTCCCTGAGATCGCCCACATGTAC-- 597 consensus_15974#4 CCTGCTGACTGATCCGAACCCTGATGATCCTCTGGTCCCTGAGATCGCCCACATGTAC-- 163 consensus_15974#2 CCTGCTGACTGATCCGAACCCTGATGATCCTCTGGTCCCTGAGATCGCCCACATGTATCA 222 consensus_15974#5 CCTGCTGACTGATCCGAACCCTGATGATCCTCTGGTCCCTGAGATCGCCCACATGTAC-- 116 ********************************************************* consensus_15974#1 AAGACAGATAGGCACAAGTACGAGAACACAGCAAGGACCTGGACTCAGAGGTACGCCATG 392 consensus_15974#3 AAGACAGATAGGCACAAGTACGAGAACACAGCAAGGACCTGGACTCAGAGGTACGCCATG 382 consensus_15974#0 AAGACAGATAGGCACAAGTACGAGAACACAGCAAGGACCTGGACTCAGAGGTACGCCATG 657 consensus_15974#4 AAGACAGATAGGCACAAGTACGAGAACACAGCAAGGACCTGGACTCAGAGGTACNCCATG 223 consensus_15974#2 NAGACAGATAGGCACAAGTACGAGAACACAGCAAGGACCTGGACTCAGAGGTACGCCATG 282 consensus_15974#5 AAGACAGATAGGCACAAGTACGAGAACACAGCAAGGACCTGGACTCAGAGGTACGCCATG 176 ***************************************************** ***** consensus_15974#1 TAGCACCTCAGATATCGATGGACATGTCGATGTTGTAACAACATTATCAACGGGTGTGTC 452 consensus_15974#3 TAGCACCTCAGATATCGATGGACATGTCGATGTTGTAACAACATTATCAACGGGTGTGTC 442 consensus_15974#0 TAGCACCTCAGATATCGATGGACATGTCGATGTTGTAACAACATTATCAACGGGTGTGTC 717 consensus_15974#4 TAGCACCTCAGATATCGATGGACATGTCGATGTTGTAACAACATTATCAACGGGTGTGTC 283 consensus_15974#2 TAGCACCTCAGATATCGATGGACATGTCGATGTTGTAACAACATTATCAACGGGTGTGTC 342 consensus_15974#5 TAGCACCTCAGATATCGATGGACATGTCGATGTTGTAACAACATTATCAACGGGTGTGTC 236 ************************************************************ consensus_15974#1 TCCCTCTCGCCTTGTGTGGTGTAAGGATCAAAACCGGCTTTGCAGTGCACTCTTGGTGTT 512 consensus_15974#3 TCCCTCTCGCCTTGTGTGGTGTAAGGATCAAAACCGGCTTTGCAGTGCA-----AAAAAA 497 consensus_15974#0 TCCCTCTCGCCTTGTGTGGTGTAAGGATCAAAACCGGCTTTGCAGTGCACTCTTGGTGTT 777 consensus_15974#4 TCCCTCTCGCCTTGTGTGGTGTAAGGATCAAAACCGGCTTTGCAGTGCACTCTTGGTGTT 343 consensus_15974#2 TCCCTCTCGCCTTGTGTGGTGTAAGGATCAAAACCGGCTTTGCAGTGCACTCTTGGTGTT 402 consensus_15974#5 TCCCTCTCGCCTTGTGTGGTGTAAGGATCAAA-CCGGCTTTGCAGTGCACTCTTGGTGTT 295 ******************************** **************** consensus_15974#1 GCTCCATTGTGTCANTNACNNN-NNNAAGTGATTTCGAATAGTATCAAACTGGTGGTTTT 571 consensus_15974#3 AAAAAAAAAAAAAAAAAAAAAA-AAAAAA------------------------------- 525 consensus_15974#0 GCTCCATTGTGTCACTCACTCA-TTGCAGTGATTTCGAATAGTATCAAACTGGTGGTTTT 836 consensus_15974#4 GCTCCATTGTGTCACTCACTCA-TTGCAGTGATTTCGAATAGTATCAAACTGGTGGTTTT 402 consensus_15974#2 GCTCCATTGTGTCACTCACTCAGTTGCAGTGATTTCGAATAGTATCAAACTGGTGGTTTT 462 consensus_15974#5 GCTCCATTGTGTCACTCACTCA-TTGCAGTGATTTCGAATAGTATCAA-CTGGTGGTTTT 353 * * * * consensus_15974#1 TTTCGGTCAAAAAAAAAAAAAAAAAAAAAAAAAA-------------------------- 605 consensus_15974#3 ------------------------------------------------------------ consensus_15974#0 TTTCGGTCAGATAATGTTTGCAACTTGCCAACAAAAAAAAAAAAAAAAAAAAAAAATGCA 896 consensus_15974#4 TTTCGGTCAGATAATGTTTGCAACTTGCCAACAAAAAAAAAAAAAAAAAAAAAAAAAAAA 462 consensus_15974#2 TTTCGGTCAGATAATGTTTGCAACTTGCCACAAGTCAGTGCTTCCAATGCAGTGGTTCCT 522 consensus_15974#5 TTTCGGTCAGATAATGTTT-CAACTTGCCACAAGTCAGTGCTTCCAATCCAGTGGTTCCT 412 consensus_15974#1 -------------------------------- consensus_15974#3 -------------------------------- consensus_15974#0 TGCCGTTACGTAGCGTATC------------- 915 consensus_15974#4 AAAAAAAAAAAAAAAAATCA------------ 482 consensus_15974#2 TGCAATCTTGGCCCTCCAAGATGCAAATAA-- 552 consensus_15974#5 TG-AATCTTG-CCCTCCA-GATGCAAAAAAAA 441 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||