These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1600#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1825 fasta sequence [TCTCCGTGCCGCCACTTCCCGACCGCCGCCGCCGCCGCCCACGAGAACGAGCGGCCGCCGCAACCCGCGGTCCCCTTGCTTCCTACTCCCTTCCCCTGCTCTTCCTTGCTTGTTTCCACGTGGTCGTCTAATGGGCAAGCGGCTCGCCGGCGCCGAGAAAGAGGTGCTCGTTGAGATCGTCAGGTTCACCCAGAAGAACGGGCTCAAGGGCGCCGAGGGGGGATGGAAGGATTTCTTGGCTCGGAACGACAAGAAGTTCGGAGCTTCCGTGAGTGACCCCAAGAAGCGGTCCAAGGATGTGCTGCTTGCTTTCCTGCTAACCTTCTCCAAAGATTTCCAGAAGTACTTCGGAAAATTGATAAGGCGTCTGAACGAACGAAGTGCTTTTGAGCAGTTCCTGAAGGAATTTCCTGACAAGATTTCTCCTCAGCTGAAGCTTGTTCAACTGACAGCAGAACACCCGGAGTACAGGAAAAATTATAATTTCCCATCTTACAAAGAGGGATGGAAAGTGCTGCGTGAAGGCAAAATTACCAATTTTATGAAGTCAACTATGTTGGCAATTGACTGTGAGATGGTCCTTTGCCATGATGGTACGGAAGCCTTGGTCCGAGTATGTGTTGTCAACAGCAATCTAGAGGTGAAGTTAGATGAACTTGTAAACCCCTTAAAAGCTGTTGCAGACTATAGGACAAGCATTACTGGTTTGTCTAAGAAGGATTTAAAAGGAGTCACATGCTCATTAGTTGATGTTCAGAAATCGTTGAAGAAGCTCTTGTCCAAAGGAAAGATCTTGATTGGTCATAGCCTATCAAAAGATTTACATGCTCTTAAGTTTGACTACTCTCGGGTTATTGATACAGCATACATCTTTAAGTATGCAAATTTGCCTACTACTGCATCAGCCTCTTTAAACAGCCTGTGCAAGTCTGTTTTGGGCTATGCTGTTCGAGAAGAAGGGGAGCCACATAACTGCTTGAAGGATGCAGAAGCTGCGATGAATCTAGTTCTCGCCAAGCTTAAGCATGGATTTAATGATCCCATTGAAATTGCAAGAGATAGTGTACCTGAATCTGATATGATGAAGTTGCTTGCTCACAAAATTCCAGTCTACCTGCCTTGTCAGGAGCTGCTCAAATTATTTTCTGGAAATCCCAGTATTGATGAGAAGATTGATTCAAGGGTTCGGGGTGATTATTATTCTACATGTATTTCATTTGGAGACAGAGATGAGGTAGAGAAGGCATTTGATGAACTGGATGGCCAAGAGGCCAAGGACTCTAGCGGGCGACTTCAAAAAAATGTGCTGCTGAAACGCGACAATGGGGATGTGGCAAGCTTCTATGTACGAAAGATGGCGTATGGCGCTCAACTAAACAAGTCAGAACTTTCAAACAAGAGACCGCCACCTACCGAGCATGTAGAACCAACAAAAGAAGATAATGATGGGGATAAGCAAAAAAAGCGAAAAACTGGTAAAAAGCATGAGAAGAAGAAAGCAAAGATATCAGTGGCTGAATGAAGATCTTTGGAGGGATGATTTTGAGATGCAGAGAGATTGGATGAATGAAGCTGGAGAAGGATGTTGAGACCATTCGGCTAGGAGCAGTTTTGATCTCACCATGAGTCATGAGAGGAACAATTTTGATCTCTAGACGCTCTTCTTGTTCAGCGGTTTGTGCGCTTTAGATTGCTAGGCATTAACTGTAGAAAGTTGTTAGGGCTCATTTTATTCCTCCATTTTATCGACTGTTGATCACGAGTATTAGAGAGGGTCCAGGAGGATATTCTTAACGTAAATTCACTGCAAACTCTTTGAAATGTG] [+] EMBL AK069859 [TCTCCGTGCCGCCACTTCCCGACCGCCGCCGCCGCCGCCCACGAGAACGAGCGGCCGCCGCAACCCGCGGTCCCCTTGCTTCCTACTCCCTTCCCCTGCTCTTCCTTGCTTGTTTCCACGTGGTCGTCTAATGGGCAAGCGGCTCGCCGGCGCCGAGAAAGAGGTGCTCGTTGAGATCGTCAGGTTCACCCAGAAGAACGGGCTCAAGGGCGCCGAGGGGGGATGGAAGGATTTCTTGGCTCGGAACGACAAGAAGTTCGGAGCTTCCGTGAGTGACCCCAAGAAGCGGTCCAAGGATGTGCTGCTTGCTTTCCTGCTAACCTTCTCCAAAGATTTCCAGAAGTACTTCGGAAAATTGATAAGGCGTCTGAACGAACGAAGTGCTTTTGAGCAGTTCCTGAAGGAATTTCCTGACAAGATTTCTCCTCAGCTGAAGCTTGTTCAACTGACAGCAGAACACCCGGAGTACAGGAAAAATTATAATTTCCCATCTTACAAAGAGGGATGGAAAGTGCTGCGTGAAGGCAAAATTACCAATTTTATGAAGTCAACTATGTTGGCAATTGACTGTGAGATGGTCCTTTGCCATGATGGTACGGAAGCCTTGGTCCGAGTATGTGTTGTCAACAGCAATCTAGAGGTGAAGTTAGATGAACTTGTAAACCCCTTAAAAGCTGTTGCAGACTATAGGACAAGCATTACTGGTTTGTCTAAGAAGGATTTAAAAGGAGTCACATGCTCATTAGTTGATGTTCAGAAATCGTTGAAGAAGCTCTTGTCCAAAGGAAAGATCTTGATTGGTCATAGCCTATCAAAAGATTTACATGCTCTTAAGTTTGACTACTCTCGGGTTATTGATACAGCATACATCTTTAAGTATGCAAATTTGCCTACTACTGCATCAGCCTCTTTAAACAGCCTGTGCAAGTCTGTTTTGGGCTATGCTGTTCGAGAAGAAGGGGAGCCACATAACTGCTTGAAGGATGCAGAAGCTGCGATGAATCTAGTTCTCGCCAAGCTTAAGCATGGATTTAATGATCCCATTGAAATTGCAAGAGATAGTGTACCTGAATCTGATATGATGAAGTTGCTTGCTCACAAAATTCCAGTCTACCTGCCTTGTCAGGAGCTGCTCAAATTATTTTCTGGAAATCCCAGTATTGATGAGAAGATTGATTCAAGGGTTCGGGGTGATTATTATTCTACATGTATTTCATTTGGAGACAGAGATGAGGTAGAGAAGGCATTTGATGAACTGGATGGCCAAGAGGCCAAGGACTCTAGCGGGCGACTTCAAAAAAATGTGCTGCTGAAACGCGACAATGGGGATGTGGCAAGCTTCTATGTACGAAAGATGGCGTATGGCGCTCAACTAAACAAGTCAGAACTTTCAAACAAGAGACCGCCACCTACCGAGCATGTAGAACCAACAAAAGAAGATAATGATGGGGATAAGCAAAAAAAGCGAAAAACTGGTAAAAAGCATGAGAAGAAGAAAGCAAAGATATCAGTGGCTGAATGAAGATCTTTGGAGGGATGATTTTGAGATGCAGAGAGATTGGATGAATGAAGCTGGAGAAGGATGTTGAGACCATTCGGCTAGGAGCAGTTTTGATCTCACCATGAGTCATGAGAGGAACAATTTTGATCTCTAGACGCTCTTCTTGTTCAGCGGTTTGTGCGCTTTAGATTGCTAGGCATTAACTGTAGAAAGTTGTTAGGGCTCATTTTATTCCTCCATTTTATCGACTGTTGATCACGAGTATTAGAGAGGGTCCAGGAGGATATTCTTAACGTAAATTCACTGCAAACTCTTTGAAATGTG] consensusID : consensus_1600#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 578 fasta sequence [CCCTTAAAAGCTGTTGCAGACTATAGGACAAGCATTACTGGTTTGTCTAAGAAGGATTTAAAAGGAGTCACATGCTCATTAGTTGATGTTCAGGTATGCTTCTACAAATTCTTTATGTATTTGGTTTGATTTAATTTTGCTAAAGTTATATTGTTCCTTTCCTTCCCTAGAAATCGTTGATTAAGCTCTTGTCCAAAGGAAAGATCTTGATTGGTCATAGCCTATCAAAAGATTTACATGGTAATCTGTGATTAATGCGGTCCAATCTATTTGATATAGTCATTCTATGCATCCATCATGTTTATTGGCAGGCTTTATTTTGTTACTCAGTATGTAACTCAGCTTTTATCATTTTTTTGATTCGTTTGCAGCTCTTAAGTTTGACTACTCTCGGGTTATTGATACAGCATACATCTTTAAGTATGCAAATTTGCCTACTACTGCATCAGCCTCTTTAAACAGCCTGTGCAAGTCTGTTTTGGGCTATGCTGTTCGAGAAGAATGGGAGCCACATAACTGCTTGAAGGATGCAGAAGCTGCGATGAATCTAGTTCTCGCCAAGCTTAAGCATGGATTTA] [+] EMBL CF305904 [CCCTTAAAAGCTGTTGCAGACTATAGGACAAGCATTACTGGTTTGTCTAAGAAGGATTTAAAAGGAGTCACATGCTCATTAGTTGATGTTCAGGTATGCTTCTACAAATTCTTTATGTATTTGGTTTGATTTAATTTTGCTAAAGTTATATTGTTCCTTTCCTTCCCTAGAAATCGTTGATTAAGCTCTTGTCCAAAGGAAAGATCTTGATTGGTCATAGCCTATCAAAAGATTTACATGGTAATCTGTGATTAATGCGGTCCAATCTATTTGATATAGTCATTCTATGCATCCATCATGTTTATTGGCAGGCTTTATTTTGTTACTCAGTATGTAACTCAGCTTTTATCATTTTTTTGATTCGTTTGCAGCTCTTAAGTTTGACTACTCTCGGGTTATTGATACAGCATACATCTTTAAGTATGCAAATTTGCCTACTACTGCATCAGCCTCTTTAAACAGCCTGTGCAAGTCTGTTTTGGGCTATGCTGTTCGAGAAGAATGGGAGCCACATAACTGCTTGAAGGATGCAGAAGCTGCGATGAATCTAGTTCTCGCCAAGCTTAAGCATGGATTTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1600#0 TCTCCGTGCCGCCACTTCCCGACCGCCGCCGCCGCCGCCCACGAGAACGAGCGGCCGCCG 60 consensus_1600#1 ------------------------------------------------------------ consensus_1600#0 CAACCCGCGGTCCCCTTGCTTCCTACTCCCTTCCCCTGCTCTTCCTTGCTTGTTTCCACG 120 consensus_1600#1 ------------------------------------------------------------ consensus_1600#0 TGGTCGTCTAATGGGCAAGCGGCTCGCCGGCGCCGAGAAAGAGGTGCTCGTTGAGATCGT 180 consensus_1600#1 ------------------------------------------------------------ consensus_1600#0 CAGGTTCACCCAGAAGAACGGGCTCAAGGGCGCCGAGGGGGGATGGAAGGATTTCTTGGC 240 consensus_1600#1 ------------------------------------------------------------ consensus_1600#0 TCGGAACGACAAGAAGTTCGGAGCTTCCGTGAGTGACCCCAAGAAGCGGTCCAAGGATGT 300 consensus_1600#1 ------------------------------------------------------------ consensus_1600#0 GCTGCTTGCTTTCCTGCTAACCTTCTCCAAAGATTTCCAGAAGTACTTCGGAAAATTGAT 360 consensus_1600#1 ------------------------------------------------------------ consensus_1600#0 AAGGCGTCTGAACGAACGAAGTGCTTTTGAGCAGTTCCTGAAGGAATTTCCTGACAAGAT 420 consensus_1600#1 ------------------------------------------------------------ consensus_1600#0 TTCTCCTCAGCTGAAGCTTGTTCAACTGACAGCAGAACACCCGGAGTACAGGAAAAATTA 480 consensus_1600#1 -------------------------CCCTTAAAAGCTGTTGCAGACTATAGGACAAGCAT 35 * * ** * ** ** **** ** consensus_1600#0 TAATTTCCCATCTTACAAAGAGGGATGGAAAGTGCTGCGTGAA--GGCAAAATTACCAAT 538 consensus_1600#1 TACTGGTTTGTCTAAGAAGGATTTAAAAGGAGTCACATGCTCATTAGTTGATGTTCAGGT 95 ** * *** * ** ** * *** * * * * * * * consensus_1600#0 TTTATGAAGTCAACTATGTTGGCAATTGACTGTGAGATGGTCCTTTGCCATGATGGTACG 598 consensus_1600#1 ATGCTTCTACAAATTCTTTATGTATTTGGTT-TGATTTAAT--TTTGCTAAAGTTATATT 152 * * ** * * * * * *** * *** * * ***** * * ** consensus_1600#0 GAAGCCTTGGT--CCGAGTATGTGTTG--TCAACAGCAATCTAGAGGTGAAGTTAGATGA 654 consensus_1600#1 GTTCCTTTCCTTCCCTAGAAATCGTTGATTAAGCTCTTGTCCAAAGGAAAGATCTTGATT 212 * * ** * ** ** * **** * * * ** * *** * * consensus_1600#0 ACTTGTAAACCCCTTAAAAGCTGTTGCAGACTATAGGACAAGCATTACTGGTTTGTCTAA 714 consensus_1600#1 GGTCATAG-CCTATCAAAAGAT-TTACATGGTAATCTGTGATTAATGCGGTCCAATCTAT 270 * ** ** * ***** * ** ** ** * * * * * **** consensus_1600#0 GAAGGATTTAAAAGGAGTCACATGCTCATTA-GTTGATGTTCAGAAATCGTTGAAGAAGC 773 consensus_1600#1 TTGATAT---AGTCATTCTATGCATCCATCATGTTTATTGGCAGGCTTTATT-------T 320 ** * * *** * *** ** *** * ** consensus_1600#0 TCTTGTCCAAAGGAAAGATCTTGATTGGTCATAGCCTATCAAAAGATTTACATGCTCTTA 833 consensus_1600#1 TGTTACTCAGTATGTAACTCAGCTTTTATCAT--TTTTTTGATTCGTTTGCA-GCTCTTA 377 * ** ** * ** ** **** * * * *** ** ******* consensus_1600#0 AGTTTGACTACTCTCGGGTTATTGATACAGCATACATCTTTAAGTATGCAAATTTGCCTA 893 consensus_1600#1 AGTTTGACTACTCTCGGGTTATTGATACAGCATACATCTTTAAGTATGCAAATTTGCCTA 437 ************************************************************ consensus_1600#0 CTACTGCATCAGCCTCTTTAAACAGCCTGTGCAAGTCTGTTTTGGGCTATGCTGTTCGAG 953 consensus_1600#1 CTACTGCATCAGCCTCTTTAAACAGCCTGTGCAAGTCTGTTTTGGGCTATGCTGTTCGAG 497 ************************************************************ consensus_1600#0 AAGAAGGGGAGCCACATAACTGCTTGAAGGATGCAGAAGCTGCGATGAATCTAGTTCTCG 1013 consensus_1600#1 AAGAATGGGAGCCACATAACTGCTTGAAGGATGCAGAAGCTGCGATGAATCTAGTTCTCG 557 ***** ****************************************************** consensus_1600#0 CCAAGCTTAAGCATGGATTTAATGATCCCATTGAAATTGCAAGAGATAGTGTACCTGAAT 1073 consensus_1600#1 CCAAGCTTAAGCATGGATTTA--------------------------------------- 578 ********************* consensus_1600#0 CTGATATGATGAAGTTGCTTGCTCACAAAATTCCAGTCTACCTGCCTTGTCAGGAGCTGC 1133 consensus_1600#1 ------------------------------------------------------------ consensus_1600#0 TCAAATTATTTTCTGGAAATCCCAGTATTGATGAGAAGATTGATTCAAGGGTTCGGGGTG 1193 consensus_1600#1 ------------------------------------------------------------ consensus_1600#0 ATTATTATTCTACATGTATTTCATTTGGAGACAGAGATGAGGTAGAGAAGGCATTTGATG 1253 consensus_1600#1 ------------------------------------------------------------ consensus_1600#0 AACTGGATGGCCAAGAGGCCAAGGACTCTAGCGGGCGACTTCAAAAAAATGTGCTGCTGA 1313 consensus_1600#1 ------------------------------------------------------------ consensus_1600#0 AACGCGACAATGGGGATGTGGCAAGCTTCTATGTACGAAAGATGGCGTATGGCGCTCAAC 1373 consensus_1600#1 ------------------------------------------------------------ consensus_1600#0 TAAACAAGTCAGAACTTTCAAACAAGAGACCGCCACCTACCGAGCATGTAGAACCAACAA 1433 consensus_1600#1 ------------------------------------------------------------ consensus_1600#0 AAGAAGATAATGATGGGGATAAGCAAAAAAAGCGAAAAACTGGTAAAAAGCATGAGAAGA 1493 consensus_1600#1 ------------------------------------------------------------ consensus_1600#0 AGAAAGCAAAGATATCAGTGGCTGAATGAAGATCTTTGGAGGGATGATTTTGAGATGCAG 1553 consensus_1600#1 ------------------------------------------------------------ consensus_1600#0 AGAGATTGGATGAATGAAGCTGGAGAAGGATGTTGAGACCATTCGGCTAGGAGCAGTTTT 1613 consensus_1600#1 ------------------------------------------------------------ consensus_1600#0 GATCTCACCATGAGTCATGAGAGGAACAATTTTGATCTCTAGACGCTCTTCTTGTTCAGC 1673 consensus_1600#1 ------------------------------------------------------------ consensus_1600#0 GGTTTGTGCGCTTTAGATTGCTAGGCATTAACTGTAGAAAGTTGTTAGGGCTCATTTTAT 1733 consensus_1600#1 ------------------------------------------------------------ consensus_1600#0 TCCTCCATTTTATCGACTGTTGATCACGAGTATTAGAGAGGGTCCAGGAGGATATTCTTA 1793 consensus_1600#1 ------------------------------------------------------------ consensus_1600#0 ACGTAAATTCACTGCAAACTCTTTGAAATGTG 1825 consensus_1600#1 -------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||